Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66673.t1 | XP_013455748.1 | 97.5 | 360 | 9 | 0 | 1 | 360 | 1 | 360 | 4.00E-197 | 697.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66673.t1 | Q54NS9 | 32.5 | 375 | 217 | 9 | 3 | 346 | 27 | 396 | 6.7e-44 | 179.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66673.t1 | A0A072UJ51 | 97.5 | 360 | 9 | 0 | 1 | 360 | 1 | 360 | 2.9e-197 | 697.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052533 | MS.gene66673 | 0.838879 | 2.21E-57 | -1.69E-46 |
| MS.gene055150 | MS.gene66673 | 0.851953 | 6.34E-61 | -1.69E-46 |
| MS.gene057102 | MS.gene66673 | 0.804439 | 2.16E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene66673 | 0.807399 | 5.15E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene66673 | 0.826888 | 2.12E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene66673 | -0.818317 | 2.09E-52 | -1.69E-46 |
| MS.gene06023 | MS.gene66673 | 0.803655 | 3.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66673.t1 | MTR_4g051622 | 97.500 | 360 | 9 | 0 | 1 | 360 | 1 | 360 | 0.0 | 717 |
| MS.gene66673.t1 | MTR_4g051645 | 67.135 | 356 | 115 | 2 | 3 | 357 | 6 | 360 | 1.70e-180 | 504 |
| MS.gene66673.t1 | MTR_2g061440 | 55.000 | 80 | 36 | 0 | 138 | 217 | 193 | 272 | 8.75e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66673.t1 | AT5G22140 | 64.972 | 354 | 123 | 1 | 4 | 357 | 12 | 364 | 3.53e-170 | 479 |
| MS.gene66673.t1 | AT3G44190 | 62.994 | 354 | 130 | 1 | 4 | 357 | 12 | 364 | 1.19e-168 | 475 |
| MS.gene66673.t1 | AT3G44190 | 63.344 | 311 | 113 | 1 | 47 | 357 | 1 | 310 | 2.01e-146 | 416 |
| MS.gene66673.t1 | AT5G22140 | 64.309 | 311 | 110 | 1 | 47 | 357 | 1 | 310 | 5.18e-146 | 415 |
Find 67 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAATAGTTTCAGATTCT+TGG | 0.196415 | 4.3:-48467686 | None:intergenic |
| AATGTCTTTCTTGAAGCTTT+TGG | 0.265463 | 4.3:-48466985 | None:intergenic |
| ACTCCTTCACAAATGAAAAT+AGG | 0.292255 | 4.3:+48467064 | MS.gene66673:CDS |
| CTTCAAGAAAGACATTAAAA+TGG | 0.321115 | 4.3:+48466992 | MS.gene66673:CDS |
| ACAATTGTTGGAAGACTTCC+TGG | 0.349182 | 4.3:+48467814 | MS.gene66673:CDS |
| TTCAGATTCAGTTATGTTGA+TGG | 0.355713 | 4.3:-48466345 | None:intergenic |
| GGAGCGAAAGAACGTAAATT+AGG | 0.359944 | 4.3:+48467715 | MS.gene66673:CDS |
| TCAAGATTGCTAGAATATAT+TGG | 0.361205 | 4.3:+48466961 | MS.gene66673:CDS |
| CCAAGTGAAACAATAGATAT+TGG | 0.377879 | 4.3:-48467757 | None:intergenic |
| TTTCCTTTCATGACAATTGT+TGG | 0.378561 | 4.3:+48467802 | MS.gene66673:CDS |
| GGGAAAACAAGAAAGGGATT+AGG | 0.385570 | 4.3:+48467865 | MS.gene66673:CDS |
| GAAAAGAAAGTTGTGATTAT+AGG | 0.392457 | 4.3:+48465381 | MS.gene66673:CDS |
| ATTGCTTACCTCCTTTGTAT+TGG | 0.393585 | 4.3:-48466466 | None:intergenic |
| GATTATCTTGTTATCGCAAC+TGG | 0.394119 | 4.3:+48466401 | MS.gene66673:CDS |
| GGAAAACAAGAAAGGGATTA+GGG | 0.398328 | 4.3:+48467866 | MS.gene66673:CDS |
| ATTATAGGAGGTGGTGTTGC+TGG | 0.401428 | 4.3:+48465396 | MS.gene66673:CDS |
| TATTGGTGGTTGTGCCTTGT+AGG | 0.413298 | 4.3:-48467740 | None:intergenic |
| CTCTCAAGTATTCATCAACT+TGG | 0.419612 | 4.3:-48467215 | None:intergenic |
| AGTCAGGAGATTTGTTTGTT+GGG | 0.428035 | 4.3:+48467845 | MS.gene66673:CDS |
| TATCTATTGTTTCACTTGGA+AGG | 0.431104 | 4.3:+48467761 | MS.gene66673:CDS |
| TTTCGCTATTGGAGACATTA+CGG | 0.432085 | 4.3:+48467257 | MS.gene66673:CDS |
| AAGTCAGGAGATTTGTTTGT+TGG | 0.437062 | 4.3:+48467844 | MS.gene66673:CDS |
| GTTTGTTGGGAAAACAAGAA+AGG | 0.452444 | 4.3:+48467858 | MS.gene66673:CDS |
| ATTGTTGGTGGAGGTCCAAC+TGG | 0.452939 | 4.3:+48466871 | MS.gene66673:CDS |
| AATCTGAAACTATTGATAGA+AGG | 0.453316 | 4.3:+48467691 | MS.gene66673:CDS |
| TTTGTTGGGAAAACAAGAAA+GGG | 0.460435 | 4.3:+48467859 | MS.gene66673:CDS |
| CTTCCTGGTATGATCAAGTC+AGG | 0.460740 | 4.3:+48467829 | MS.gene66673:CDS |
| CCAATATCTATTGTTTCACT+TGG | 0.467044 | 4.3:+48467757 | MS.gene66673:CDS |
| TGCGATAACAAGATAATCAT+AGG | 0.469385 | 4.3:-48466396 | None:intergenic |
| CATAGAGAATATTTCACAAA+AGG | 0.477184 | 4.3:+48466302 | MS.gene66673:CDS |
| CATTAAAATGGCTTCAATCA+AGG | 0.485208 | 4.3:+48467004 | MS.gene66673:CDS |
| AGGACTTATCAAACTTCGGT+TGG | 0.486951 | 4.3:+48467084 | MS.gene66673:CDS |
| AAAGTGACTATAGTGCATAA+AGG | 0.487929 | 4.3:+48466937 | MS.gene66673:CDS |
| CCTAGCCATGCTGTGGAAAG+TGG | 0.493960 | 4.3:-48467150 | None:intergenic |
| AAAGATGATTTGGATGGTCA+TGG | 0.509883 | 4.3:+48467186 | MS.gene66673:CDS |
| GATGAATACTTGAGAGTGAA+GGG | 0.516573 | 4.3:+48467222 | MS.gene66673:CDS |
| GATCACTGTCCTTTCTGCGA+AGG | 0.531450 | 4.3:-48466276 | None:intergenic |
| GTTTCACTTGGAAGGAAACA+TGG | 0.536683 | 4.3:+48467769 | MS.gene66673:CDS |
| TCTGAAGTCTTCACTGCTGA+TGG | 0.538947 | 4.3:+48466362 | MS.gene66673:CDS |
| CTTCCAACAATTGTCATGAA+AGG | 0.545832 | 4.3:-48467805 | None:intergenic |
| TGATGAATACTTGAGAGTGA+AGG | 0.546458 | 4.3:+48467221 | MS.gene66673:CDS |
| ACTGTCCTTTCTGCGAAGGA+TGG | 0.552774 | 4.3:-48466272 | None:intergenic |
| AAATAGGACTTATCAAACTT+CGG | 0.554684 | 4.3:+48467080 | MS.gene66673:CDS |
| TGGAGCCATCCTTCGCAGAA+AGG | 0.564663 | 4.3:+48466267 | MS.gene66673:CDS |
| GGCAAGTTTGAGAGCAATGG+TGG | 0.564940 | 4.3:+48466247 | MS.gene66673:CDS |
| AAAGTTGTGATTATAGGAGG+TGG | 0.565821 | 4.3:+48465387 | MS.gene66673:CDS |
| AGTGAAACAATAGATATTGG+TGG | 0.570389 | 4.3:-48467754 | None:intergenic |
| ATGGGCAAGTTTGAGAGCAA+TGG | 0.572076 | 4.3:+48466244 | MS.gene66673:CDS |
| TCTCCTGACTTGATCATACC+AGG | 0.577444 | 4.3:-48467832 | None:intergenic |
| AAGAAAGTTGTGATTATAGG+AGG | 0.578925 | 4.3:+48465384 | MS.gene66673:CDS |
| ATTGCTCTCAAACTTGCCCA+TGG | 0.588281 | 4.3:-48466242 | None:intergenic |
| CCACTTTCCACAGCATGGCT+AGG | 0.590873 | 4.3:+48467150 | MS.gene66673:CDS |
| GCTGCTAGCTCAACACCAGT+TGG | 0.599083 | 4.3:-48466886 | None:intergenic |
| AATACTTGAGAGTGAAGGGA+AGG | 0.600149 | 4.3:+48467226 | MS.gene66673:CDS |
| CTGAAACTATTGATAGAAGG+AGG | 0.602874 | 4.3:+48467694 | MS.gene66673:CDS |
| GAAAGACTTGACCAATACAA+AGG | 0.625608 | 4.3:+48466455 | MS.gene66673:CDS |
| AAGATGATTTGGATGGTCAT+GGG | 0.626015 | 4.3:+48467187 | MS.gene66673:CDS |
| AGTTTCACCTAGCCATGCTG+TGG | 0.627017 | 4.3:-48467157 | None:intergenic |
| GATAATCATAGGTGATCTGA+CGG | 0.632076 | 4.3:-48466385 | None:intergenic |
| GGAAACCACTTTCCACAGCA+TGG | 0.632481 | 4.3:+48467145 | MS.gene66673:CDS |
| ACGTAAATTAGGTACCTACA+AGG | 0.632721 | 4.3:+48467726 | MS.gene66673:CDS |
| TGAGCTAGCAGCAGAGATTG+CGG | 0.644801 | 4.3:+48466897 | MS.gene66673:CDS |
| TGATGGCACTTGATATAACA+AGG | 0.655923 | 4.3:-48466328 | None:intergenic |
| AGACTTGACCAATACAAAGG+AGG | 0.681103 | 4.3:+48466458 | MS.gene66673:CDS |
| ATGATTTGGATGGTCATGGG+AGG | 0.683773 | 4.3:+48467190 | MS.gene66673:CDS |
| AAACAAGGAGTGTATGCACA+AGG | 0.686146 | 4.3:+48467646 | MS.gene66673:CDS |
| ATGTTACAGGAAATCAAACA+AGG | 0.698106 | 4.3:+48467631 | MS.gene66673:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGAAATATATGTTAC+AGG | + | chr4.3:48467618-48467637 | MS.gene66673:intron | 15.0% |
| !! | GTAATTAAAATAATATCGAT+TGG | + | chr4.3:48465595-48465614 | MS.gene66673:intron | 15.0% |
| !!! | CTTTTATTTAAAACCTTATA+TGG | + | chr4.3:48466149-48466168 | MS.gene66673:intron | 15.0% |
| !!! | TGTGTTAAATTTAATTTGAA+TGG | + | chr4.3:48465573-48465592 | MS.gene66673:intron | 15.0% |
| !!! | AACTTTTTTGAAAGATGATT+TGG | + | chr4.3:48467176-48467195 | MS.gene66673:CDS | 20.0% |
| !!! | ATACACATTTTCTATGTATA+GGG | + | chr4.3:48467124-48467143 | MS.gene66673:CDS | 20.0% |
| ! | AAATAGGACTTATCAAACTT+CGG | + | chr4.3:48467080-48467099 | MS.gene66673:CDS | 25.0% |
| ! | AAGAAAAAAAAAAGAGAGCA+TGG | - | chr4.3:48465514-48465533 | None:intergenic | 25.0% |
| ! | ATGCAGAGTGATTATTTATT+TGG | + | chr4.3:48465753-48465772 | MS.gene66673:intron | 25.0% |
| ! | CATAGAGAATATTTCACAAA+AGG | + | chr4.3:48466302-48466321 | MS.gene66673:CDS | 25.0% |
| ! | CCATAATATAAATGTTTCAG+AGG | - | chr4.3:48466037-48466056 | None:intergenic | 25.0% |
| ! | CTTCAAGAAAGACATTAAAA+TGG | + | chr4.3:48466992-48467011 | MS.gene66673:CDS | 25.0% |
| ! | GAAAAGAAAGTTGTGATTAT+AGG | + | chr4.3:48465381-48465400 | MS.gene66673:CDS | 25.0% |
| ! | GGAATTGTTAATTAATTGCA+TGG | - | chr4.3:48466531-48466550 | None:intergenic | 25.0% |
| ! | TATCAATAGTTTCAGATTCT+TGG | - | chr4.3:48467689-48467708 | None:intergenic | 25.0% |
| ! | TCAAGATTGCTAGAATATAT+TGG | + | chr4.3:48466961-48466980 | MS.gene66673:CDS | 25.0% |
| ! | TTAACATATGCGTATTATTG+CGG | - | chr4.3:48467579-48467598 | None:intergenic | 25.0% |
| !! | AATCTGAAACTATTGATAGA+AGG | + | chr4.3:48467691-48467710 | MS.gene66673:CDS | 25.0% |
| !! | CTTTTGTGAAATATTCTCTA+TGG | - | chr4.3:48466304-48466323 | None:intergenic | 25.0% |
| !! | GATACACATTTTCTATGTAT+AGG | + | chr4.3:48467123-48467142 | MS.gene66673:CDS | 25.0% |
| !! | TGCTACAAACTTTTATATTG+TGG | + | chr4.3:48465967-48465986 | MS.gene66673:intron | 25.0% |
| !!! | ACTATAGTCACTTTTTTATC+AGG | - | chr4.3:48466931-48466950 | None:intergenic | 25.0% |
| !!! | ATGCTGATGGTTTTAAATTT+AGG | + | chr4.3:48465926-48465945 | MS.gene66673:intron | 25.0% |
| !!! | CCTCTGAAACATTTATATTA+TGG | + | chr4.3:48466034-48466053 | MS.gene66673:intron | 25.0% |
| !!! | TTTTTGAAAGATGATTTGGA+TGG | + | chr4.3:48467180-48467199 | MS.gene66673:CDS | 25.0% |
| AAACAAGTAAAGACTGACTA+AGG | - | chr4.3:48465654-48465673 | None:intergenic | 30.0% | |
| AAAGTGACTATAGTGCATAA+AGG | + | chr4.3:48466937-48466956 | MS.gene66673:CDS | 30.0% | |
| AAGAAAGTTGTGATTATAGG+AGG | + | chr4.3:48465384-48465403 | MS.gene66673:CDS | 30.0% | |
| ACTCCTTCACAAATGAAAAT+AGG | + | chr4.3:48467064-48467083 | MS.gene66673:CDS | 30.0% | |
| AGTGAAACAATAGATATTGG+TGG | - | chr4.3:48467757-48467776 | None:intergenic | 30.0% | |
| ATGTTACAGGAAATCAAACA+AGG | + | chr4.3:48467631-48467650 | MS.gene66673:intron | 30.0% | |
| CATTAAAATGGCTTCAATCA+AGG | + | chr4.3:48467004-48467023 | MS.gene66673:CDS | 30.0% | |
| CCAAGTGAAACAATAGATAT+TGG | - | chr4.3:48467760-48467779 | None:intergenic | 30.0% | |
| CCAATATCTATTGTTTCACT+TGG | + | chr4.3:48467757-48467776 | MS.gene66673:CDS | 30.0% | |
| GACCAAAATCTTGACTATTA+GGG | + | chr4.3:48465677-48465696 | MS.gene66673:intron | 30.0% | |
| GCAATAATACGCATATGTTA+AGG | + | chr4.3:48467578-48467597 | MS.gene66673:intron | 30.0% | |
| TAAAAGACGACGAATTGAAT+TGG | - | chr4.3:48467308-48467327 | None:intergenic | 30.0% | |
| TAATAAGAGTTGTTGAACAC+AGG | + | chr4.3:48466201-48466220 | MS.gene66673:intron | 30.0% | |
| TACACAACAAGTTCCATATA+AGG | - | chr4.3:48466165-48466184 | None:intergenic | 30.0% | |
| TATCTATTGTTTCACTTGGA+AGG | + | chr4.3:48467761-48467780 | MS.gene66673:CDS | 30.0% | |
| TCGATTTCATATGAGTGATA+AGG | + | chr4.3:48466792-48466811 | MS.gene66673:intron | 30.0% | |
| TGCGATAACAAGATAATCAT+AGG | - | chr4.3:48466399-48466418 | None:intergenic | 30.0% | |
| TGGTAAAATGATGACAAATG+CGG | + | chr4.3:48465987-48466006 | MS.gene66673:intron | 30.0% | |
| TTCAGATTCAGTTATGTTGA+TGG | - | chr4.3:48466348-48466367 | None:intergenic | 30.0% | |
| TTTCCTTTCATGACAATTGT+TGG | + | chr4.3:48467802-48467821 | MS.gene66673:CDS | 30.0% | |
| TTTGTTGGGAAAACAAGAAA+GGG | + | chr4.3:48467859-48467878 | MS.gene66673:CDS | 30.0% | |
| ! | AATGTCTTTCTTGAAGCTTT+TGG | - | chr4.3:48466988-48467007 | None:intergenic | 30.0% |
| ! | AGTCCTATTTTCATTTGTGA+AGG | - | chr4.3:48467070-48467089 | None:intergenic | 30.0% |
| !! | CTAATAGTCAAGATTTTGGT+CGG | - | chr4.3:48465678-48465697 | None:intergenic | 30.0% |
| !! | TAATAGTCAAGATTTTGGTC+GGG | - | chr4.3:48465677-48465696 | None:intergenic | 30.0% |
| !! | TCTCTAAAACCTTTATACTG+TGG | + | chr4.3:48466060-48466079 | MS.gene66673:intron | 30.0% |
| !!! | GATGTTGAATAGTTTTAGCA+AGG | - | chr4.3:48465428-48465447 | None:intergenic | 30.0% |
| !!! | TCCGATACAGTTTTAAATTG+CGG | - | chr4.3:48466093-48466112 | None:intergenic | 30.0% |
| AAACCTTTATACTGTGGTTG+TGG | + | chr4.3:48466066-48466085 | MS.gene66673:intron | 35.0% | |
| AAAGTTGTGATTATAGGAGG+TGG | + | chr4.3:48465387-48465406 | MS.gene66673:CDS | 35.0% | |
| AACCTTTATACTGTGGTTGT+GGG | + | chr4.3:48466067-48466086 | MS.gene66673:intron | 35.0% | |
| ACGTAAATTAGGTACCTACA+AGG | + | chr4.3:48467726-48467745 | MS.gene66673:CDS | 35.0% | |
| ATTGCTTACCTCCTTTGTAT+TGG | - | chr4.3:48466469-48466488 | None:intergenic | 35.0% | |
| CAGAATCTATCCCAAAAACT+AGG | + | chr4.3:48466429-48466448 | MS.gene66673:CDS | 35.0% | |
| CCACTGTATATATAGACATC+AGG | + | chr4.3:48465812-48465831 | MS.gene66673:intron | 35.0% | |
| CCTGATGTCTATATATACAG+TGG | - | chr4.3:48465815-48465834 | None:intergenic | 35.0% | |
| CGACCAAAATCTTGACTATT+AGG | + | chr4.3:48465676-48465695 | MS.gene66673:intron | 35.0% | |
| CTCTCAAGTATTCATCAACT+TGG | - | chr4.3:48467218-48467237 | None:intergenic | 35.0% | |
| CTGAAACTATTGATAGAAGG+AGG | + | chr4.3:48467694-48467713 | MS.gene66673:CDS | 35.0% | |
| CTTCCAACAATTGTCATGAA+AGG | - | chr4.3:48467808-48467827 | None:intergenic | 35.0% | |
| GAAAGACTTGACCAATACAA+AGG | + | chr4.3:48466455-48466474 | MS.gene66673:CDS | 35.0% | |
| GATAATCATAGGTGATCTGA+CGG | - | chr4.3:48466388-48466407 | None:intergenic | 35.0% | |
| GATGAATACTTGAGAGTGAA+GGG | + | chr4.3:48467222-48467241 | MS.gene66673:CDS | 35.0% | |
| GGAAAACAAGAAAGGGATTA+GGG | + | chr4.3:48467866-48467885 | MS.gene66673:CDS | 35.0% | |
| TGATGAATACTTGAGAGTGA+AGG | + | chr4.3:48467221-48467240 | MS.gene66673:CDS | 35.0% | |
| TGATGGCACTTGATATAACA+AGG | - | chr4.3:48466331-48466350 | None:intergenic | 35.0% | |
| TTTCGCTATTGGAGACATTA+CGG | + | chr4.3:48467257-48467276 | MS.gene66673:CDS | 35.0% | |
| ! | AAAGATGATTTGGATGGTCA+TGG | + | chr4.3:48467186-48467205 | MS.gene66673:CDS | 35.0% |
| ! | AAGATGATTTGGATGGTCAT+GGG | + | chr4.3:48467187-48467206 | MS.gene66673:CDS | 35.0% |
| ! | AAGTCAGGAGATTTGTTTGT+TGG | + | chr4.3:48467844-48467863 | MS.gene66673:CDS | 35.0% |
| ! | AGACTGACTAAGGATTGTTT+TGG | - | chr4.3:48465644-48465663 | None:intergenic | 35.0% |
| ! | AGTCAGGAGATTTGTTTGTT+GGG | + | chr4.3:48467845-48467864 | MS.gene66673:CDS | 35.0% |
| ! | ATCTGTCACTTGACACAAAT+AGG | - | chr4.3:48466762-48466781 | None:intergenic | 35.0% |
| ! | CGTCGTCTTTTATTATCTCT+AGG | + | chr4.3:48467316-48467335 | MS.gene66673:intron | 35.0% |
| ! | GACCCTAATAGTCAAGATTT+TGG | - | chr4.3:48465682-48465701 | None:intergenic | 35.0% |
| ! | GATTATCTTGTTATCGCAAC+TGG | + | chr4.3:48466401-48466420 | MS.gene66673:CDS | 35.0% |
| ! | GCCGCAATTTAAAACTGTAT+CGG | + | chr4.3:48466089-48466108 | MS.gene66673:intron | 35.0% |
| ! | GTTTGTTGGGAAAACAAGAA+AGG | + | chr4.3:48467858-48467877 | MS.gene66673:CDS | 35.0% |
| ! | TCTGTCACTTGACACAAATA+GGG | - | chr4.3:48466761-48466780 | None:intergenic | 35.0% |
| !! | ACGACGAATTGAATTGGTTT+TGG | - | chr4.3:48467302-48467321 | None:intergenic | 35.0% |
| !! | AGTCTTTCAGTCCTAGTTTT+TGG | - | chr4.3:48466443-48466462 | None:intergenic | 35.0% |
| !! | GTCTTTCAGTCCTAGTTTTT+GGG | - | chr4.3:48466442-48466461 | None:intergenic | 35.0% |
| !!! | AACTGTTATTTTCCGCTATC+TGG | - | chr4.3:48467551-48467570 | None:intergenic | 35.0% |
| !!! | ACTAAGGATTGTTTTGGTCA+GGG | - | chr4.3:48465638-48465657 | None:intergenic | 35.0% |
| !!! | ACTGTTATTTTCCGCTATCT+GGG | - | chr4.3:48467550-48467569 | None:intergenic | 35.0% |
| !!! | AGGAGTATTTTGAGATTCCA+TGG | + | chr4.3:48466225-48466244 | MS.gene66673:CDS | 35.0% |
| !!! | GGAGTATTTTGAGATTCCAT+GGG | + | chr4.3:48466226-48466245 | MS.gene66673:CDS | 35.0% |
| AAGAGTTGTTGAACACAGGA+AGG | + | chr4.3:48466205-48466224 | MS.gene66673:intron | 40.0% | |
| AATACTTGAGAGTGAAGGGA+AGG | + | chr4.3:48467226-48467245 | MS.gene66673:CDS | 40.0% | |
| ACAATTGTTGGAAGACTTCC+TGG | + | chr4.3:48467814-48467833 | MS.gene66673:CDS | 40.0% | |
| AGAAAGAAAGAGAGAGCTCA+CGG | - | chr4.3:48465474-48465493 | None:intergenic | 40.0% | |
| AGACTTGACCAATACAAAGG+AGG | + | chr4.3:48466458-48466477 | MS.gene66673:CDS | 40.0% | |
| AGGACTTATCAAACTTCGGT+TGG | + | chr4.3:48467084-48467103 | MS.gene66673:CDS | 40.0% | |
| CAGTTTCATTACGATGCTGA+TGG | + | chr4.3:48465913-48465932 | MS.gene66673:intron | 40.0% | |
| CATGCAGTGTTGTCAAATAG+TGG | + | chr4.3:48467359-48467378 | MS.gene66673:intron | 40.0% | |
| CTATTGTCAATCCCAGATAG+CGG | + | chr4.3:48467536-48467555 | MS.gene66673:intron | 40.0% | |
| CTGCATCAATTGCTAGAACT+TGG | + | chr4.3:48466502-48466521 | MS.gene66673:intron | 40.0% | |
| GAAGACCATATTCGAAAGCA+CGG | - | chr4.3:48465891-48465910 | None:intergenic | 40.0% | |
| GATACGCTATTTAGCACAGA+TGG | + | chr4.3:48467420-48467439 | MS.gene66673:intron | 40.0% | |
| GGAGCGAAAGAACGTAAATT+AGG | + | chr4.3:48467715-48467734 | MS.gene66673:CDS | 40.0% | |
| GGGAAAACAAGAAAGGGATT+AGG | + | chr4.3:48467865-48467884 | MS.gene66673:CDS | 40.0% | |
| GTCAAATAGTGGCATAGTAG+CGG | + | chr4.3:48467370-48467389 | MS.gene66673:intron | 40.0% | |
| GTTGTTTGGTTGCGATTGAA+CGG | + | chr4.3:48466579-48466598 | MS.gene66673:intron | 40.0% | |
| GTTTCACTTGGAAGGAAACA+TGG | + | chr4.3:48467769-48467788 | MS.gene66673:CDS | 40.0% | |
| TTCAGAGGTCTTTGCAATTG+CGG | - | chr4.3:48466022-48466041 | None:intergenic | 40.0% | |
| ! | AAACAAGGAGTGTATGCACA+AGG | + | chr4.3:48467646-48467665 | MS.gene66673:CDS | 40.0% |
| ! | AGGAACAACGTTTTCGCTAT+TGG | + | chr4.3:48467246-48467265 | MS.gene66673:CDS | 40.0% |
| !!! | CGTTCAGTTTTGATTGTTGG+TGG | + | chr4.3:48466859-48466878 | MS.gene66673:CDS | 40.0% |
| !!! | GACTAAGGATTGTTTTGGTC+AGG | - | chr4.3:48465639-48465658 | None:intergenic | 40.0% |
| !!! | GCACGTTCAGTTTTGATTGT+TGG | + | chr4.3:48466856-48466875 | MS.gene66673:CDS | 40.0% |
| !!! | TCAGTTTTGATTGTTGGTGG+AGG | + | chr4.3:48466862-48466881 | MS.gene66673:CDS | 40.0% |
| ATGGGCAAGTTTGAGAGCAA+TGG | + | chr4.3:48466244-48466263 | MS.gene66673:CDS | 45.0% | |
| ATTGCTCTCAAACTTGCCCA+TGG | - | chr4.3:48466245-48466264 | None:intergenic | 45.0% | |
| CAAGCACAATAGTGGTCGTT+GGG | - | chr4.3:48466683-48466702 | None:intergenic | 45.0% | |
| CACAGATGGTTTCCAGATAG+TGG | + | chr4.3:48467434-48467453 | MS.gene66673:intron | 45.0% | |
| CTGTGCTAAATAGCGTATCG+TGG | - | chr4.3:48467419-48467438 | None:intergenic | 45.0% | |
| CTTCCTGGTATGATCAAGTC+AGG | + | chr4.3:48467829-48467848 | MS.gene66673:CDS | 45.0% | |
| GAGAACCGTGCTTTCGAATA+TGG | + | chr4.3:48465883-48465902 | MS.gene66673:intron | 45.0% | |
| TGGGATTGACAATAGGTGAC+TGG | - | chr4.3:48467531-48467550 | None:intergenic | 45.0% | |
| TTGAATCGCGATGTGTGACT+AGG | - | chr4.3:48465854-48465873 | None:intergenic | 45.0% | |
| ! | ATGATTTGGATGGTCATGGG+AGG | + | chr4.3:48467190-48467209 | MS.gene66673:CDS | 45.0% |
| ! | ATGCTGACTGCGTCAATGAA+TGG | - | chr4.3:48466552-48466571 | None:intergenic | 45.0% |
| ! | CGCTATCTGGGATTGACAAT+AGG | - | chr4.3:48467538-48467557 | None:intergenic | 45.0% |
| ! | GACTGGTCAATCTCAGATAG+CGG | - | chr4.3:48467514-48467533 | None:intergenic | 45.0% |
| ! | TATTGGTGGTTGTGCCTTGT+AGG | - | chr4.3:48467743-48467762 | None:intergenic | 45.0% |
| ! | TCTCCTGACTTGATCATACC+AGG | - | chr4.3:48467835-48467854 | None:intergenic | 45.0% |
| ! | TCTGAAGTCTTCACTGCTGA+TGG | + | chr4.3:48466362-48466381 | MS.gene66673:CDS | 45.0% |
| !! | ATTATAGGAGGTGGTGTTGC+TGG | + | chr4.3:48465396-48465415 | MS.gene66673:CDS | 45.0% |
| !! | TCAGCATGTTGGTGGTTGTT+TGG | + | chr4.3:48466565-48466584 | MS.gene66673:intron | 45.0% |
| !!! | GGATTGTTTTGGTCAGGGTT+TGG | - | chr4.3:48465633-48465652 | None:intergenic | 45.0% |
| ACGCTGCTTAAGCCACTATC+TGG | - | chr4.3:48467449-48467468 | None:intergenic | 50.0% | |
| ACTGTCCTTTCTGCGAAGGA+TGG | - | chr4.3:48466275-48466294 | None:intergenic | 50.0% | |
| AGTTTCACCTAGCCATGCTG+TGG | - | chr4.3:48467160-48467179 | None:intergenic | 50.0% | |
| ATGATGTCTGATCGCAGTCG+TGG | + | chr4.3:48466125-48466144 | MS.gene66673:intron | 50.0% | |
| CATTGACGCAGTCAGCATGT+TGG | + | chr4.3:48466554-48466573 | MS.gene66673:intron | 50.0% | |
| GATCACTGTCCTTTCTGCGA+AGG | - | chr4.3:48466279-48466298 | None:intergenic | 50.0% | |
| GCAAGCACAATAGTGGTCGT+TGG | - | chr4.3:48466684-48466703 | None:intergenic | 50.0% | |
| GGAAACCACTTTCCACAGCA+TGG | + | chr4.3:48467145-48467164 | MS.gene66673:CDS | 50.0% | |
| GGCAAGTTTGAGAGCAATGG+TGG | + | chr4.3:48466247-48466266 | MS.gene66673:CDS | 50.0% | |
| GGCCCACAACCACAGTATAA+AGG | - | chr4.3:48466072-48466091 | None:intergenic | 50.0% | |
| TCGCACAGCAAGCACAATAG+TGG | - | chr4.3:48466691-48466710 | None:intergenic | 50.0% | |
| TGAGCTAGCAGCAGAGATTG+CGG | + | chr4.3:48466897-48466916 | MS.gene66673:CDS | 50.0% | |
| ! | ATTGTTGGTGGAGGTCCAAC+TGG | + | chr4.3:48466871-48466890 | MS.gene66673:CDS | 50.0% |
| CCACTTTCCACAGCATGGCT+AGG | + | chr4.3:48467150-48467169 | MS.gene66673:CDS | 55.0% | |
| CCTAGCCATGCTGTGGAAAG+TGG | - | chr4.3:48467153-48467172 | None:intergenic | 55.0% | |
| GCTGCTAGCTCAACACCAGT+TGG | - | chr4.3:48466889-48466908 | None:intergenic | 55.0% | |
| TGACGCAGTCAGCATGTTGG+TGG | + | chr4.3:48466557-48466576 | MS.gene66673:intron | 55.0% | |
| TGGAGCCATCCTTCGCAGAA+AGG | + | chr4.3:48466267-48466286 | MS.gene66673:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 48465375 | 48467915 | 48465375 | ID=MS.gene66673 |
| chr4.3 | mRNA | 48465375 | 48467915 | 48465375 | ID=MS.gene66673.t1;Parent=MS.gene66673 |
| chr4.3 | exon | 48465375 | 48465472 | 48465375 | ID=MS.gene66673.t1.exon1;Parent=MS.gene66673.t1 |
| chr4.3 | CDS | 48465375 | 48465472 | 48465375 | ID=cds.MS.gene66673.t1;Parent=MS.gene66673.t1 |
| chr4.3 | exon | 48466223 | 48466479 | 48466223 | ID=MS.gene66673.t1.exon2;Parent=MS.gene66673.t1 |
| chr4.3 | CDS | 48466223 | 48466479 | 48466223 | ID=cds.MS.gene66673.t1;Parent=MS.gene66673.t1 |
| chr4.3 | exon | 48466836 | 48467287 | 48466836 | ID=MS.gene66673.t1.exon3;Parent=MS.gene66673.t1 |
| chr4.3 | CDS | 48466836 | 48467287 | 48466836 | ID=cds.MS.gene66673.t1;Parent=MS.gene66673.t1 |
| chr4.3 | exon | 48467640 | 48467915 | 48467640 | ID=MS.gene66673.t1.exon4;Parent=MS.gene66673.t1 |
| chr4.3 | CDS | 48467640 | 48467915 | 48467640 | ID=cds.MS.gene66673.t1;Parent=MS.gene66673.t1 |
| Gene Sequence |
| Protein sequence |
