AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66921

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66921.t1 MTR_2g054940 99.609 511 2 0 1 511 1 511 0.0 1059
MS.gene66921.t1 MTR_7g081695 96.040 505 8 1 1 505 1 493 0.0 994
MS.gene66921.t1 MTR_4g113280 87.550 498 51 1 14 511 3 489 0.0 911
MS.gene66921.t1 MTR_1g076430 75.889 506 122 0 6 511 7 512 0.0 826
MS.gene66921.t1 MTR_1g041085 77.485 493 111 0 19 511 26 518 0.0 816
MS.gene66921.t1 MTR_4g070270 68.635 491 153 1 15 505 13 502 0.0 713
MS.gene66921.t1 MTR_7g118170 65.737 502 157 6 17 506 31 529 0.0 668
MS.gene66921.t1 MTR_1g110930 63.136 491 180 1 18 508 4 493 0.0 639
MS.gene66921.t1 MTR_3g105550 58.084 501 198 4 17 505 36 536 0.0 627
MS.gene66921.t1 MTR_5g056510 60.081 491 195 1 18 508 4 493 0.0 617
MS.gene66921.t1 MTR_6g074880 60.917 458 173 2 56 507 13 470 0.0 578
MS.gene66921.t1 MTR_4g054630 59.477 459 179 3 53 505 9 466 0.0 567
MS.gene66921.t1 MTR_4g054415 62.919 418 154 1 89 505 8 425 0.0 560
MS.gene66921.t1 MTR_6g032965 61.818 385 147 0 122 506 1 385 0.0 514
MS.gene66921.t1 MTR_2g013740 53.734 482 209 5 19 497 33 503 9.36e-172 494
MS.gene66921.t1 MTR_7g118160 55.198 404 137 3 102 503 56 417 7.88e-160 461
MS.gene66921.t1 MTR_2g436480 49.890 455 210 7 63 505 3 451 1.55e-157 456
MS.gene66921.t1 MTR_2g007020 52.683 410 191 3 98 506 45 452 6.72e-157 454
MS.gene66921.t1 MTR_1g102290 47.059 408 215 1 97 503 77 484 6.63e-136 402
MS.gene66921.t1 MTR_3g072940 46.472 411 218 2 94 503 74 483 4.98e-131 389
MS.gene66921.t1 MTR_3g072980 46.472 411 218 2 94 503 74 483 5.20e-131 389
MS.gene66921.t1 MTR_6g051440 46.287 404 215 2 101 503 80 482 2.48e-120 362
MS.gene66921.t1 MTR_1g115560 39.954 433 227 7 98 504 28 453 3.36e-109 333
MS.gene66921.t1 MTR_4g062270 39.817 437 245 6 76 502 5 433 4.67e-107 327
MS.gene66921.t1 MTR_4g062190 38.170 448 250 5 72 502 5 442 4.70e-106 325
MS.gene66921.t1 MTR_2g096210 39.813 427 226 6 98 502 27 444 9.12e-105 322
MS.gene66921.t1 MTR_4g062170 38.514 444 253 5 72 502 5 441 1.52e-102 316
MS.gene66921.t1 MTR_4g054260 58.203 256 89 2 251 505 87 325 8.50e-100 304
MS.gene66921.t1 MTR_4g053905 67.296 159 52 0 347 505 1 159 7.57e-74 231
MS.gene66921.t1 MTR_4g054265 50.893 112 55 0 87 198 6 117 3.52e-34 125
MS.gene66921.t1 MTR_7g086260 59.615 52 21 0 345 396 25 76 1.22e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66921.t1 AT2G26640 82.711 509 87 1 3 511 2 509 0.0 900
MS.gene66921.t1 AT1G04220 72.079 505 132 5 15 511 18 521 0.0 763
MS.gene66921.t1 AT5G43760 74.239 493 121 3 25 511 34 526 0.0 735
MS.gene66921.t1 AT1G19440 68.712 489 152 1 15 503 25 512 0.0 715
MS.gene66921.t1 AT2G16280 67.894 489 156 1 17 505 23 510 0.0 705
MS.gene66921.t1 AT1G01120 62.828 495 178 3 17 505 32 526 0.0 660
MS.gene66921.t1 AT1G68530 61.837 490 186 1 19 508 6 494 0.0 644
MS.gene66921.t1 AT4G34510 63.522 477 167 3 30 505 15 485 0.0 639
MS.gene66921.t1 AT1G25450 61.224 490 189 1 19 508 1 489 0.0 629
MS.gene66921.t1 AT2G26250 55.238 525 202 5 8 503 28 548 0.0 601
MS.gene66921.t1 AT4G34250 57.851 484 197 3 28 505 5 487 0.0 573
MS.gene66921.t1 AT4G34520 58.025 486 192 3 31 505 6 490 0.0 573
MS.gene66921.t1 AT2G15090 58.511 470 184 5 45 505 12 479 0.0 558
MS.gene66921.t1 AT2G46720 60.142 424 164 2 87 505 42 465 0.0 553
MS.gene66921.t1 AT3G10280 58.962 424 162 3 87 505 42 458 0.0 533
MS.gene66921.t1 AT1G71160 50.943 424 204 4 82 503 25 446 1.12e-158 459
MS.gene66921.t1 AT1G68530 57.849 344 145 0 19 362 6 349 1.40e-145 422
MS.gene66921.t1 AT5G49070 49.412 425 207 4 87 506 35 456 5.90e-145 424
MS.gene66921.t1 AT3G52160 44.969 487 197 5 20 494 22 449 1.31e-141 415
MS.gene66921.t1 AT3G52160 50.959 365 148 2 130 494 3 336 5.77e-131 384
MS.gene66921.t1 AT5G04530 39.810 422 243 5 89 502 19 437 3.66e-107 328
MS.gene66921.t1 AT2G28630 40.515 427 225 7 98 502 27 446 8.82e-107 327
MS.gene66921.t1 AT2G28630 40.515 427 225 7 98 502 27 446 8.82e-107 327
MS.gene66921.t1 AT1G07720 40.758 422 232 4 98 502 27 447 1.10e-105 324
MS.gene66921.t1 AT1G07720 40.758 422 232 4 98 502 70 490 1.84e-105 325
MS.gene66921.t1 AT5G49070 44.444 279 154 1 87 364 35 313 5.27e-80 253
MS.gene66921.t1 AT4G34850 25.483 259 149 10 236 482 91 317 2.63e-12 68.2
MS.gene66921.t1 AT4G34850 25.483 259 149 10 236 482 164 390 5.45e-12 68.2

Find 134 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGATATCTATGATATC+TGG 0.226248 2.3:-36831026 MS.gene66921:CDS
ATGCACTAAGAGGATATTTA+TGG 0.261715 2.3:-36830863 MS.gene66921:CDS
AGAATGACACTTTATCGTTT+TGG 0.268393 2.3:-36829926 MS.gene66921:CDS
GGTGGGATGGGATGCAGTGC+TGG 0.280642 2.3:-36830514 MS.gene66921:CDS
CGATGAGATCCACCAGTTTC+CGG 0.286351 2.3:-36829729 MS.gene66921:CDS
TACCTTATCAAAAGATCTTA+TGG 0.301784 2.3:-36830194 MS.gene66921:CDS
TTCCTAGCTTCTTTCATTGA+AGG 0.317480 2.3:+36830715 None:intergenic
ATTTAGATGGCAGAAATTCT+TGG 0.321018 2.3:+36829698 None:intergenic
ATCAGAATTCCAATGTCTTT+AGG 0.328553 2.3:+36830631 None:intergenic
AGCTTGAAATCCGGAATATA+AGG 0.330746 2.3:+36830046 None:intergenic
GGTGTGGACCAATTGGTATT+TGG 0.335798 2.3:+36830297 None:intergenic
TGGCAAATAGCATTTGGTTC+TGG 0.340846 2.3:-36829824 MS.gene66921:CDS
AAAACAAACATTACCACGTT+GGG 0.342115 2.3:-36830151 MS.gene66921:CDS
GTGCATTTGCGAGACTCTTC+CGG 0.354359 2.3:+36830880 None:intergenic
TCCTTTCTTGATCCTTCCCT+TGG 0.368172 2.3:+36829856 None:intergenic
CTGCAATTCTACTTTCCAAC+AGG 0.368912 2.3:-36830339 MS.gene66921:CDS
AAAGATCTTATGGCCGTTGC+AGG 0.373806 2.3:-36830184 MS.gene66921:CDS
TTCGAATTGTTTGTTCCGTA+TGG 0.380907 2.3:-36830368 MS.gene66921:CDS
AGCTTCTTTCATTGAAGGAT+TGG 0.386247 2.3:+36830720 None:intergenic
TTTAAACTACATGATTTAGA+TGG 0.406805 2.3:+36829685 None:intergenic
ACAACCAACGCATACGAGTT+AGG 0.410167 2.3:+36830448 None:intergenic
AAGCTTGGATCGATCGTTCC+CGG 0.410332 2.3:+36830393 None:intergenic
GCTTCTTTCATTGAAGGATT+GGG 0.411634 2.3:+36830721 None:intergenic
TTGGAACATCGACCGGAAAC+TGG 0.414672 2.3:+36829717 None:intergenic
GAAGATAAAGCCTTATATTC+CGG 0.417524 2.3:-36830056 MS.gene66921:CDS
GCGCAGTATGGAAGGCTCTA+AGG 0.417809 2.3:-36829787 MS.gene66921:CDS
AGAACATGGCAAATAGCATT+TGG 0.419756 2.3:-36829830 MS.gene66921:CDS
GAAGCGGAGGCAGTTATGTT+TGG 0.419896 2.3:-36830691 MS.gene66921:CDS
TCAAGTGCAACAGCGCAGTA+TGG 0.422431 2.3:-36829799 MS.gene66921:CDS
CGATAAAGTGTCATTCTTGA+CGG 0.427252 2.3:+36829932 None:intergenic
GGAATGCTTAGAACAGCTTC+TGG 0.428265 2.3:+36830745 None:intergenic
TGGAGAACATCACGTTGAAT+TGG 0.436866 2.3:-36830420 MS.gene66921:CDS
ATCCTTGAGAGATCTGGTCT+TGG 0.439851 2.3:-36830784 MS.gene66921:CDS
CGAAAGATCCTTGAGAGATC+TGG 0.441571 2.3:-36830790 MS.gene66921:CDS
CTGTTCTTCGCTACGTTGGT+TGG 0.446813 2.3:-36830097 MS.gene66921:CDS
TGCGAACGGTGTGGACCAAT+TGG 0.448066 2.3:+36830290 None:intergenic
GAAGCTGTCTCCATGGCATA+TGG 0.449190 2.3:-36829957 MS.gene66921:CDS
GGTACATGCCATGAGTGATT+AGG 0.451469 2.3:+36831103 None:intergenic
CAGTTCGCTTTGGTACGAAT+TGG 0.453655 2.3:-36829891 MS.gene66921:CDS
GTGGGATGGGATGCAGTGCT+GGG 0.466651 2.3:-36830513 MS.gene66921:CDS
ACACCTCGAGCAGTTCGCTT+TGG 0.468976 2.3:-36829901 MS.gene66921:CDS
CCTCTTTCTTTCACCACTTG+TGG 0.470663 2.3:-36831082 MS.gene66921:CDS
CAATGATATCTATGATATCT+GGG 0.474517 2.3:-36831025 MS.gene66921:CDS
CGACGACGATGGCGCTAACA+AGG 0.474648 2.3:+36831188 None:intergenic
GAGAAGATCCAAATACCAAT+TGG 0.476259 2.3:-36830305 MS.gene66921:CDS
TCGAATTGTTTGTTCCGTAT+GGG 0.486272 2.3:-36830367 MS.gene66921:CDS
ATCTCTCAAGGATCTTTCGT+TGG 0.488205 2.3:+36830794 None:intergenic
TTTACTTTATGACTCGTCCT+AGG 0.489310 2.3:-36830936 MS.gene66921:CDS
GAAGACGACAATGGCAAAGT+TGG 0.504336 2.3:-36830220 MS.gene66921:CDS
AACATAATGAGTTACAATCT+TGG 0.513615 2.3:-36830535 MS.gene66921:CDS
ATTGTTTGTTCCGTATGGGA+GGG 0.513671 2.3:-36830363 MS.gene66921:CDS
TCAAAAGCTAGCTTGAAATC+CGG 0.514010 2.3:+36830037 None:intergenic
AGCGAAGAACAGCAACTGTT+CGG 0.515852 2.3:+36830108 None:intergenic
ATCTAAAACAGCTCTTCCAC+CGG 0.515874 2.3:+36829997 None:intergenic
GCCAAGGGAAGGATCAAGAA+AGG 0.516116 2.3:-36829857 MS.gene66921:CDS
GAGTTACAATCTTGGTGGGA+TGG 0.516163 2.3:-36830527 MS.gene66921:CDS
GAAATTCTTGGAACATCGAC+CGG 0.516259 2.3:+36829710 None:intergenic
ATCACGTTGAATTGGTATCC+CGG 0.518078 2.3:-36830412 MS.gene66921:CDS
AGCTTGGATCGATCGTTCCC+GGG 0.518481 2.3:+36830394 None:intergenic
TTGTTTGTTCCGTATGGGAG+GGG 0.520242 2.3:-36830362 MS.gene66921:CDS
CAACAAAAGAGAAGAACCCT+TGG 0.523945 2.3:-36829754 MS.gene66921:CDS
CAAACAATTCGAAACAAGCT+TGG 0.524897 2.3:+36830378 None:intergenic
CTCCAAGACCAGATCTCTCA+AGG 0.527098 2.3:+36830782 None:intergenic
GTGCAACAGCGCAGTATGGA+AGG 0.529765 2.3:-36829795 MS.gene66921:CDS
CCACACCGTTCGCACTAACA+AGG 0.531499 2.3:-36830281 MS.gene66921:CDS
TCTCCTATCCGATCCCCTGT+TGG 0.533862 2.3:+36830324 None:intergenic
GAGGGCGAGTGGTTTCTTCA+CGG 0.536357 2.3:-36830833 MS.gene66921:CDS
AGTCTCGCAAATGCACTAAG+AGG 0.536367 2.3:-36830873 MS.gene66921:CDS
ATTGCAGAGAGTGACGGAGT+TGG 0.537030 2.3:+36830586 None:intergenic
TCTACTTTCCAACAGGGGAT+CGG 0.537137 2.3:-36830332 MS.gene66921:CDS
AATTGTTTGTTCCGTATGGG+AGG 0.537893 2.3:-36830364 MS.gene66921:CDS
TCTTGCTAAAGAGCTTCTCC+AGG 0.541294 2.3:-36830476 MS.gene66921:CDS
GTATGCGTTGGTTGTTAGCA+TGG 0.541573 2.3:-36830440 MS.gene66921:CDS
GATATCATAGATATCATTGA+GGG 0.541632 2.3:+36831029 None:intergenic
GCAACTGTTCGGACGTTGGA+AGG 0.547179 2.3:+36830119 None:intergenic
CCACAAGTGGTGAAAGAAAG+AGG 0.552043 2.3:+36831082 None:intergenic
GAACATTTCTGCATTCATGC+CGG 0.553989 2.3:-36830016 MS.gene66921:CDS
GAGAGTCGAGCAAATAATAA+CGG 0.554120 2.3:+36830978 None:intergenic
AGTTACAATCTTGGTGGGAT+GGG 0.556990 2.3:-36830526 MS.gene66921:CDS
AGCACCCTTGTTAGTGCGAA+CGG 0.557174 2.3:+36830276 None:intergenic
TGGTGGATCTCATCGATCCA+AGG 0.558878 2.3:+36829737 None:intergenic
TTAACAAGGTAGACTGGCCT+AGG 0.559143 2.3:+36830919 None:intergenic
TCATCCTAACTCGTATGCGT+TGG 0.563252 2.3:-36830452 MS.gene66921:CDS
ATTGGCTTACACGGAAGCCA+AGG 0.568482 2.3:-36829873 MS.gene66921:CDS
TTTCAAGGCATCGCCTGCAA+CGG 0.569236 2.3:+36830171 None:intergenic
AAAACTTGAAGCTGTCTCCA+TGG 0.569815 2.3:-36829964 MS.gene66921:CDS
TTTCCAACAGGGGATCGGAT+AGG 0.573244 2.3:-36830327 MS.gene66921:CDS
AAATTGAAGTATGTGAAGCT+TGG 0.574482 2.3:-36831135 MS.gene66921:CDS
GAATTGCAGCCCCTCCCATA+CGG 0.574490 2.3:+36830353 None:intergenic
GAAAACAAACATTACCACGT+TGG 0.574589 2.3:-36830152 MS.gene66921:CDS
AACAGCAACTGTTCGGACGT+TGG 0.575994 2.3:+36830115 None:intergenic
ACGGTAAAGCCTAAAGACAT+TGG 0.576657 2.3:-36830640 MS.gene66921:CDS
GAGAAATTAACAAGGTAGAC+TGG 0.577191 2.3:+36830913 None:intergenic
CATACGAGTTAGGATGAACC+TGG 0.577273 2.3:+36830458 None:intergenic
TTGGTACGAATTGGCTTACA+CGG 0.578204 2.3:-36829882 MS.gene66921:CDS
TCACGTTGAATTGGTATCCC+GGG 0.579569 2.3:-36830411 MS.gene66921:CDS
TAATTTCTCGTGTTACAAGC+CGG 0.580512 2.3:-36830899 MS.gene66921:CDS
TATCATTACCTAATCACTCA+TGG 0.585224 2.3:-36831111 MS.gene66921:CDS
GGAAGGATCCGCGACGACGA+TGG 0.585504 2.3:+36831177 None:intergenic
TCTTTCATTGAAGGATTGGG+AGG 0.589318 2.3:+36830724 None:intergenic
CATTTCTGCATTCATGCCGG+TGG 0.590314 2.3:-36830013 MS.gene66921:CDS
ATCCTTCAATGAAAGAAGCT+AGG 0.592042 2.3:-36830717 MS.gene66921:CDS
ATGGATCACTCGAGGGCGAG+TGG 0.595528 2.3:-36830844 MS.gene66921:CDS
ATGATCATTGCAGAGAGTGA+CGG 0.597131 2.3:+36830580 None:intergenic
GAACATCGACCGGAAACTGG+TGG 0.598498 2.3:+36829720 None:intergenic
GTACCAAAGCGAACTGCTCG+AGG 0.599020 2.3:+36829898 None:intergenic
ATAATGAGTTACAATCTTGG+TGG 0.599058 2.3:-36830532 MS.gene66921:CDS
TAATGAGTTACAATCTTGGT+GGG 0.599305 2.3:-36830531 MS.gene66921:CDS
GTTGCTGTTCTTCGCTACGT+TGG 0.607168 2.3:-36830101 MS.gene66921:CDS
GGTGGATCTCATCGATCCAA+GGG 0.617008 2.3:+36829738 None:intergenic
AGATATCATAGATATCATTG+AGG 0.623017 2.3:+36831028 None:intergenic
GCTGCAATTAACACCACAAG+TGG 0.623028 2.3:+36831069 None:intergenic
TGCTTAGAACAGCTTCTGGT+AGG 0.624810 2.3:+36830749 None:intergenic
GGATATTTATGGATCACTCG+AGG 0.626023 2.3:-36830852 MS.gene66921:CDS
CCTTGTTAGTGCGAACGGTG+TGG 0.627883 2.3:+36830281 None:intergenic
TCAAGAAAGGAGATAGAACA+TGG 0.636177 2.3:-36829844 MS.gene66921:CDS
AAACAAACATTACCACGTTG+GGG 0.638025 2.3:-36830150 MS.gene66921:CDS
AGAAGCTAGGAAAGAAGCGG+AGG 0.638732 2.3:-36830704 MS.gene66921:CDS
CTTGACGGCTCCATATGCCA+TGG 0.639071 2.3:+36829947 None:intergenic
TCGGACGTTGGAAGGACAAG+TGG 0.640146 2.3:+36830127 None:intergenic
GACGACGATGGCGCTAACAA+GGG 0.641367 2.3:+36831189 None:intergenic
TGCAATTCTACTTTCCAACA+GGG 0.643744 2.3:-36830338 MS.gene66921:CDS
GATATTTATGGATCACTCGA+GGG 0.648472 2.3:-36830851 MS.gene66921:CDS
TTGGCTTACACGGAAGCCAA+GGG 0.648617 2.3:-36829872 MS.gene66921:CDS
CTTACACGGAAGCCAAGGGA+AGG 0.652154 2.3:-36829868 MS.gene66921:CDS
GAAAGAAGCTAGGAAAGAAG+CGG 0.654182 2.3:-36830707 MS.gene66921:CDS
ATCAATCACTATAAGCTGAG+AGG 0.664913 2.3:-36830559 MS.gene66921:CDS
GCAATTCTACTTTCCAACAG+GGG 0.671034 2.3:-36830337 MS.gene66921:CDS
TGTTAGCGCCATCGTCGTCG+CGG 0.673997 2.3:-36831185 MS.gene66921:CDS
CACACCGTTCGCACTAACAA+GGG 0.677053 2.3:-36830280 MS.gene66921:CDS
ACACAAGAAGAAGACGACAA+TGG 0.692603 2.3:-36830229 MS.gene66921:CDS
GGCGAGTGGTTTCTTCACGG+AGG 0.715615 2.3:-36830830 MS.gene66921:CDS
TGTAACACGAGAAATTAACA+AGG 0.752828 2.3:+36830905 None:intergenic
AAGGACAAGTGGCCCCAACG+TGG 0.761089 2.3:+36830138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAAAGTCGATAAAAACACA+AGG + chr2.3:36829960-36829979 None:intergenic 25.0%
! AACATAATGAGTTACAATCT+TGG - chr2.3:36830378-36830397 MS.gene66921:CDS 25.0%
! AGATATCATAGATATCATTG+AGG + chr2.3:36829888-36829907 None:intergenic 25.0%
! CAATGATATCTATGATATCT+GGG - chr2.3:36829888-36829907 MS.gene66921:CDS 25.0%
! GATATCATAGATATCATTGA+GGG + chr2.3:36829887-36829906 None:intergenic 25.0%
! TACCTTATCAAAAGATCTTA+TGG - chr2.3:36830719-36830738 MS.gene66921:CDS 25.0%
! TCAATGATATCTATGATATC+TGG - chr2.3:36829887-36829906 MS.gene66921:CDS 25.0%
!!! TTCACTGATTTTTTGAAATC+TGG + chr2.3:36829760-36829779 None:intergenic 25.0%
AAAACAAACATTACCACGTT+GGG - chr2.3:36830762-36830781 MS.gene66921:CDS 30.0%
AAATTGAAGTATGTGAAGCT+TGG - chr2.3:36829778-36829797 MS.gene66921:CDS 30.0%
ATAATGAGTTACAATCTTGG+TGG - chr2.3:36830381-36830400 MS.gene66921:CDS 30.0%
ATCAGAATTCCAATGTCTTT+AGG + chr2.3:36830285-36830304 None:intergenic 30.0%
ATGCACTAAGAGGATATTTA+TGG - chr2.3:36830050-36830069 MS.gene66921:CDS 30.0%
TAATGAGTTACAATCTTGGT+GGG - chr2.3:36830382-36830401 MS.gene66921:CDS 30.0%
TATCATTACCTAATCACTCA+TGG - chr2.3:36829802-36829821 MS.gene66921:CDS 30.0%
TGTAACACGAGAAATTAACA+AGG + chr2.3:36830011-36830030 None:intergenic 30.0%
! AGAATGACACTTTATCGTTT+TGG - chr2.3:36830987-36831006 MS.gene66921:CDS 30.0%
! GAAGATAAAGCCTTATATTC+CGG - chr2.3:36830857-36830876 MS.gene66921:CDS 30.0%
!!! CTGATTTTTTGAAATCTGGA+AGG + chr2.3:36829756-36829775 None:intergenic 30.0%
AAACAAACATTACCACGTTG+GGG - chr2.3:36830763-36830782 MS.gene66921:CDS 35.0%
AGAACATGGCAAATAGCATT+TGG - chr2.3:36831083-36831102 MS.gene66921:CDS 35.0%
AGCTTCTTTCATTGAAGGAT+TGG + chr2.3:36830196-36830215 None:intergenic 35.0%
AGCTTGAAATCCGGAATATA+AGG + chr2.3:36830870-36830889 None:intergenic 35.0%
ATCAATCACTATAAGCTGAG+AGG - chr2.3:36830354-36830373 MS.gene66921:CDS 35.0%
ATCCTTCAATGAAAGAAGCT+AGG - chr2.3:36830196-36830215 MS.gene66921:CDS 35.0%
CAAACAATTCGAAACAAGCT+TGG + chr2.3:36830538-36830557 None:intergenic 35.0%
GAAAACAAACATTACCACGT+TGG - chr2.3:36830761-36830780 MS.gene66921:CDS 35.0%
GAGAAATTAACAAGGTAGAC+TGG + chr2.3:36830003-36830022 None:intergenic 35.0%
GAGAAGATCCAAATACCAAT+TGG - chr2.3:36830608-36830627 MS.gene66921:CDS 35.0%
GAGAGTCGAGCAAATAATAA+CGG + chr2.3:36829938-36829957 None:intergenic 35.0%
GATATTTATGGATCACTCGA+GGG - chr2.3:36830062-36830081 MS.gene66921:CDS 35.0%
GCTTCTTTCATTGAAGGATT+GGG + chr2.3:36830195-36830214 None:intergenic 35.0%
TAATTTCTCGTGTTACAAGC+CGG - chr2.3:36830014-36830033 MS.gene66921:CDS 35.0%
TCAAGAAAGGAGATAGAACA+TGG - chr2.3:36831069-36831088 MS.gene66921:CDS 35.0%
TCGAATTGTTTGTTCCGTAT+GGG - chr2.3:36830546-36830565 MS.gene66921:CDS 35.0%
TGCAATTCTACTTTCCAACA+GGG - chr2.3:36830575-36830594 MS.gene66921:CDS 35.0%
TTCCTAGCTTCTTTCATTGA+AGG + chr2.3:36830201-36830220 None:intergenic 35.0%
TTCGAATTGTTTGTTCCGTA+TGG - chr2.3:36830545-36830564 MS.gene66921:CDS 35.0%
TTTACTTTATGACTCGTCCT+AGG - chr2.3:36829977-36829996 MS.gene66921:CDS 35.0%
! CGATAAAGTGTCATTCTTGA+CGG + chr2.3:36830984-36831003 None:intergenic 35.0%
! GGCCATAAGATCTTTTGATA+AGG + chr2.3:36830724-36830743 None:intergenic 35.0%
! TCAAAAGCTAGCTTGAAATC+CGG + chr2.3:36830879-36830898 None:intergenic 35.0%
!! CGTGGTAATGTTTGTTTTCA+AGG + chr2.3:36830760-36830779 None:intergenic 35.0%
!! TGAGCTGTTTTCAAAGACAA+CGG - chr2.3:36830254-36830273 MS.gene66921:CDS 35.0%
AAAACTTGAAGCTGTCTCCA+TGG - chr2.3:36830949-36830968 MS.gene66921:CDS 40.0%
AATTGTTTGTTCCGTATGGG+AGG - chr2.3:36830549-36830568 MS.gene66921:CDS 40.0%
ACACAAGAAGAAGACGACAA+TGG - chr2.3:36830684-36830703 MS.gene66921:CDS 40.0%
ACGGTAAAGCCTAAAGACAT+TGG - chr2.3:36830273-36830292 MS.gene66921:CDS 40.0%
AGTTACAATCTTGGTGGGAT+GGG - chr2.3:36830387-36830406 MS.gene66921:CDS 40.0%
ATCACGTTGAATTGGTATCC+CGG - chr2.3:36830501-36830520 MS.gene66921:CDS 40.0%
ATCTCTCAAGGATCTTTCGT+TGG + chr2.3:36830122-36830141 None:intergenic 40.0%
ATGATCATTGCAGAGAGTGA+CGG + chr2.3:36830336-36830355 None:intergenic 40.0%
ATTGTTTGTTCCGTATGGGA+GGG - chr2.3:36830550-36830569 MS.gene66921:CDS 40.0%
CAACAAAAGAGAAGAACCCT+TGG - chr2.3:36831159-36831178 MS.gene66921:CDS 40.0%
CTGCAATTCTACTTTCCAAC+AGG - chr2.3:36830574-36830593 MS.gene66921:CDS 40.0%
GAAAGAAGCTAGGAAAGAAG+CGG - chr2.3:36830206-36830225 MS.gene66921:CDS 40.0%
GAAATTCTTGGAACATCGAC+CGG + chr2.3:36831206-36831225 None:intergenic 40.0%
GAACATTTCTGCATTCATGC+CGG - chr2.3:36830897-36830916 MS.gene66921:CDS 40.0%
GCAATTCTACTTTCCAACAG+GGG - chr2.3:36830576-36830595 MS.gene66921:CDS 40.0%
GGATATTTATGGATCACTCG+AGG - chr2.3:36830061-36830080 MS.gene66921:CDS 40.0%
TCTTTCATTGAAGGATTGGG+AGG + chr2.3:36830192-36830211 None:intergenic 40.0%
TGGAGAACATCACGTTGAAT+TGG - chr2.3:36830493-36830512 MS.gene66921:CDS 40.0%
! ATCTAAAACAGCTCTTCCAC+CGG + chr2.3:36830919-36830938 None:intergenic 40.0%
! CAAGGGTTCTTCTCTTTTGT+TGG + chr2.3:36831161-36831180 None:intergenic 40.0%
! TGGCAAATAGCATTTGGTTC+TGG - chr2.3:36831089-36831108 MS.gene66921:CDS 40.0%
! TTGGTACGAATTGGCTTACA+CGG - chr2.3:36831031-36831050 MS.gene66921:CDS 40.0%
AAAGATCTTATGGCCGTTGC+AGG - chr2.3:36830729-36830748 MS.gene66921:CDS 45.0%
ACAACCAACGCATACGAGTT+AGG + chr2.3:36830468-36830487 None:intergenic 45.0%
AGCGAAGAACAGCAACTGTT+CGG + chr2.3:36830808-36830827 None:intergenic 45.0%
AGTCTCGCAAATGCACTAAG+AGG - chr2.3:36830040-36830059 MS.gene66921:CDS 45.0%
ATCCTTGAGAGATCTGGTCT+TGG - chr2.3:36830129-36830148 MS.gene66921:CDS 45.0%
CAGTTCGCTTTGGTACGAAT+TGG - chr2.3:36831022-36831041 MS.gene66921:CDS 45.0%
CATACGAGTTAGGATGAACC+TGG + chr2.3:36830458-36830477 None:intergenic 45.0%
CCACAAGTGGTGAAAGAAAG+AGG + chr2.3:36829834-36829853 None:intergenic 45.0%
CCTCTTTCTTTCACCACTTG+TGG - chr2.3:36829831-36829850 MS.gene66921:CDS 45.0%
CGAAAGATCCTTGAGAGATC+TGG - chr2.3:36830123-36830142 MS.gene66921:CDS 45.0%
GAAGACGACAATGGCAAAGT+TGG - chr2.3:36830693-36830712 MS.gene66921:CDS 45.0%
GAGTTACAATCTTGGTGGGA+TGG - chr2.3:36830386-36830405 MS.gene66921:CDS 45.0%
GCTGCAATTAACACCACAAG+TGG + chr2.3:36829847-36829866 None:intergenic 45.0%
GGAATGCTTAGAACAGCTTC+TGG + chr2.3:36830171-36830190 None:intergenic 45.0%
GGTACATGCCATGAGTGATT+AGG + chr2.3:36829813-36829832 None:intergenic 45.0%
GGTGTGGACCAATTGGTATT+TGG + chr2.3:36830619-36830638 None:intergenic 45.0%
TCACGTTGAATTGGTATCCC+GGG - chr2.3:36830502-36830521 MS.gene66921:CDS 45.0%
TCATCCTAACTCGTATGCGT+TGG - chr2.3:36830461-36830480 MS.gene66921:CDS 45.0%
TCCTTTCTTGATCCTTCCCT+TGG + chr2.3:36831060-36831079 None:intergenic 45.0%
TCTACTTTCCAACAGGGGAT+CGG - chr2.3:36830581-36830600 MS.gene66921:CDS 45.0%
TCTTGCTAAAGAGCTTCTCC+AGG - chr2.3:36830437-36830456 MS.gene66921:CDS 45.0%
TGCTTAGAACAGCTTCTGGT+AGG + chr2.3:36830167-36830186 None:intergenic 45.0%
TTGTTTGTTCCGTATGGGAG+GGG - chr2.3:36830551-36830570 MS.gene66921:CDS 45.0%
!! GTATGCGTTGGTTGTTAGCA+TGG - chr2.3:36830473-36830492 MS.gene66921:CDS 45.0%
!! TTAACAAGGTAGACTGGCCT+AGG + chr2.3:36829997-36830016 None:intergenic 45.0%
AACAGCAACTGTTCGGACGT+TGG + chr2.3:36830801-36830820 None:intergenic 50.0%
AAGCTTGGATCGATCGTTCC+CGG + chr2.3:36830523-36830542 None:intergenic 50.0%
AGAAGCTAGGAAAGAAGCGG+AGG - chr2.3:36830209-36830228 MS.gene66921:CDS 50.0%
AGCACCCTTGTTAGTGCGAA+CGG + chr2.3:36830640-36830659 None:intergenic 50.0%
CACACCGTTCGCACTAACAA+GGG - chr2.3:36830633-36830652 MS.gene66921:CDS 50.0%
CATTTCTGCATTCATGCCGG+TGG - chr2.3:36830900-36830919 MS.gene66921:CDS 50.0%
CGATGAGATCCACCAGTTTC+CGG - chr2.3:36831184-36831203 MS.gene66921:CDS 50.0%
CTCCAAGACCAGATCTCTCA+AGG + chr2.3:36830134-36830153 None:intergenic 50.0%
CTGTTCTTCGCTACGTTGGT+TGG - chr2.3:36830816-36830835 MS.gene66921:CDS 50.0%
GAAGCGGAGGCAGTTATGTT+TGG - chr2.3:36830222-36830241 MS.gene66921:CDS 50.0%
GAAGCTGTCTCCATGGCATA+TGG - chr2.3:36830956-36830975 MS.gene66921:CDS 50.0%
GCCAAGGGAAGGATCAAGAA+AGG - chr2.3:36831056-36831075 MS.gene66921:CDS 50.0%
GGTGGATCTCATCGATCCAA+GGG + chr2.3:36831178-36831197 None:intergenic 50.0%
GTGCATTTGCGAGACTCTTC+CGG + chr2.3:36830036-36830055 None:intergenic 50.0%
TCAAGTGCAACAGCGCAGTA+TGG - chr2.3:36831114-36831133 MS.gene66921:CDS 50.0%
TTGGAACATCGACCGGAAAC+TGG + chr2.3:36831199-36831218 None:intergenic 50.0%
TTGGCTTACACGGAAGCCAA+GGG - chr2.3:36831041-36831060 MS.gene66921:CDS 50.0%
TTTCCAACAGGGGATCGGAT+AGG - chr2.3:36830586-36830605 MS.gene66921:CDS 50.0%
! ATTGCAGAGAGTGACGGAGT+TGG + chr2.3:36830330-36830349 None:intergenic 50.0%
! ATTGGCTTACACGGAAGCCA+AGG - chr2.3:36831040-36831059 MS.gene66921:CDS 50.0%
! GTTGCTGTTCTTCGCTACGT+TGG - chr2.3:36830812-36830831 MS.gene66921:CDS 50.0%
! TGGTGGATCTCATCGATCCA+AGG + chr2.3:36831179-36831198 None:intergenic 50.0%
!! TTTCAAGGCATCGCCTGCAA+CGG + chr2.3:36830745-36830764 None:intergenic 50.0%
ACACCTCGAGCAGTTCGCTT+TGG - chr2.3:36831012-36831031 MS.gene66921:CDS 55.0%
AGCTTGGATCGATCGTTCCC+GGG + chr2.3:36830522-36830541 None:intergenic 55.0%
CCACACCGTTCGCACTAACA+AGG - chr2.3:36830632-36830651 MS.gene66921:CDS 55.0%
CCTTGTTAGTGCGAACGGTG+TGG + chr2.3:36830635-36830654 None:intergenic 55.0%
CTTACACGGAAGCCAAGGGA+AGG - chr2.3:36831045-36831064 MS.gene66921:CDS 55.0%
CTTGACGGCTCCATATGCCA+TGG + chr2.3:36830969-36830988 None:intergenic 55.0%
GAACATCGACCGGAAACTGG+TGG + chr2.3:36831196-36831215 None:intergenic 55.0%
GAATTGCAGCCCCTCCCATA+CGG + chr2.3:36830563-36830582 None:intergenic 55.0%
GACGACGATGGCGCTAACAA+GGG + chr2.3:36829727-36829746 None:intergenic 55.0%
GAGGGCGAGTGGTTTCTTCA+CGG - chr2.3:36830080-36830099 MS.gene66921:CDS 55.0%
GCAACTGTTCGGACGTTGGA+AGG + chr2.3:36830797-36830816 None:intergenic 55.0%
GCGCAGTATGGAAGGCTCTA+AGG - chr2.3:36831126-36831145 MS.gene66921:CDS 55.0%
GTACCAAAGCGAACTGCTCG+AGG + chr2.3:36831018-36831037 None:intergenic 55.0%
GTGCAACAGCGCAGTATGGA+AGG - chr2.3:36831118-36831137 MS.gene66921:CDS 55.0%
TCGGACGTTGGAAGGACAAG+TGG + chr2.3:36830789-36830808 None:intergenic 55.0%
TCTCCTATCCGATCCCCTGT+TGG + chr2.3:36830592-36830611 None:intergenic 55.0%
TGCGAACGGTGTGGACCAAT+TGG + chr2.3:36830626-36830645 None:intergenic 55.0%
AAGGACAAGTGGCCCCAACG+TGG + chr2.3:36830778-36830797 None:intergenic 60.0%
ATGGATCACTCGAGGGCGAG+TGG - chr2.3:36830069-36830088 MS.gene66921:CDS 60.0%
CGACGACGATGGCGCTAACA+AGG + chr2.3:36829728-36829747 None:intergenic 60.0%
GGCGAGTGGTTTCTTCACGG+AGG - chr2.3:36830083-36830102 MS.gene66921:CDS 60.0%
GTGGGATGGGATGCAGTGCT+GGG - chr2.3:36830400-36830419 MS.gene66921:CDS 60.0%
TGTTAGCGCCATCGTCGTCG+CGG - chr2.3:36829728-36829747 MS.gene66921:CDS 60.0%
GGAAGGATCCGCGACGACGA+TGG + chr2.3:36829739-36829758 None:intergenic 65.0%
GGTGGGATGGGATGCAGTGC+TGG - chr2.3:36830399-36830418 MS.gene66921:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 36829700 36831235 36829700 ID=MS.gene66921
chr2.3 mRNA 36829700 36831235 36829700 ID=MS.gene66921.t1;Parent=MS.gene66921
chr2.3 exon 36829700 36831235 36829700 ID=MS.gene66921.t1.exon1;Parent=MS.gene66921.t1
chr2.3 CDS 36829700 36831235 36829700 ID=cds.MS.gene66921.t1;Parent=MS.gene66921.t1
Gene Sequence

>MS.gene66921

ATGACAGAATCAAAACAAGATACACCCTTGTTAGCGCCATCGTCGTCGCGGATCCTTCCAGATTTCAAAAAATCAGTGAAATTGAAGTATGTGAAGCTTGGTTATCATTACCTAATCACTCATGGCATGTACCTCTTTCTTTCACCACTTGTGGTGTTAATTGCAGCTCAGTTATCAACTTTCTCCCTCAATGATATCTATGATATCTGGGAAAATCTGCAGTACAATCTCGTATCCGTTATTATTTGCTCGACTCTCCTTGTGTTTTTATCGACTTTTTACTTTATGACTCGTCCTAGGCCAGTCTACCTTGTTAATTTCTCGTGTTACAAGCCGGAAGAGTCTCGCAAATGCACTAAGAGGATATTTATGGATCACTCGAGGGCGAGTGGTTTCTTCACGGAGGAGAATCTTGATTTCCAACGAAAGATCCTTGAGAGATCTGGTCTTGGAGAAAACACTTACCTACCAGAAGCTGTTCTAAGCATTCCTCCCAATCCTTCAATGAAAGAAGCTAGGAAAGAAGCGGAGGCAGTTATGTTTGGTGCTATCGATGAGCTGTTTTCAAAGACAACGGTAAAGCCTAAAGACATTGGAATTCTGATTGTGAATTGTAGTCTTTTCTGTCCAACTCCGTCACTCTCTGCAATGATCATCAATCACTATAAGCTGAGAGGTAACATAATGAGTTACAATCTTGGTGGGATGGGATGCAGTGCTGGGATTATTTCAATTGATCTTGCTAAAGAGCTTCTCCAGGTTCATCCTAACTCGTATGCGTTGGTTGTTAGCATGGAGAACATCACGTTGAATTGGTATCCCGGGAACGATCGATCCAAGCTTGTTTCGAATTGTTTGTTCCGTATGGGAGGGGCTGCAATTCTACTTTCCAACAGGGGATCGGATAGGAGAAGATCCAAATACCAATTGGTCCACACCGTTCGCACTAACAAGGGTGCTGATGACAAGTGCTTCAGCTGCGTTACACAAGAAGAAGACGACAATGGCAAAGTTGGTGTTACCTTATCAAAAGATCTTATGGCCGTTGCAGGCGATGCCTTGAAAACAAACATTACCACGTTGGGGCCACTTGTCCTTCCAACGTCCGAACAGTTGCTGTTCTTCGCTACGTTGGTTGGAAAGAAACTCTTCAAGATGAAGATAAAGCCTTATATTCCGGATTTCAAGCTAGCTTTTGAACATTTCTGCATTCATGCCGGTGGAAGAGCTGTTTTAGATGAGCTAGAGAAAAACTTGAAGCTGTCTCCATGGCATATGGAGCCGTCAAGAATGACACTTTATCGTTTTGGAAACACCTCGAGCAGTTCGCTTTGGTACGAATTGGCTTACACGGAAGCCAAGGGAAGGATCAAGAAAGGAGATAGAACATGGCAAATAGCATTTGGTTCTGGATTCAAGTGCAACAGCGCAGTATGGAAGGCTCTAAGGACAATCAATCCAACAAAAGAGAAGAACCCTTGGATCGATGAGATCCACCAGTTTCCGGTCGATGTTCCAAGAATTTCTGCCATCTAA
Protein sequence

>MS.gene66921.t1

MTESKQDTPLLAPSSSRILPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVVLIAAQLSTFSLNDIYDIWENLQYNLVSVIICSTLLVFLSTFYFMTRPRPVYLVNFSCYKPEESRKCTKRIFMDHSRASGFFTEENLDFQRKILERSGLGENTYLPEAVLSIPPNPSMKEARKEAEAVMFGAIDELFSKTTVKPKDIGILIVNCSLFCPTPSLSAMIINHYKLRGNIMSYNLGGMGCSAGIISIDLAKELLQVHPNSYALVVSMENITLNWYPGNDRSKLVSNCLFRMGGAAILLSNRGSDRRRSKYQLVHTVRTNKGADDKCFSCVTQEEDDNGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLKLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPTKEKNPWIDEIHQFPVDVPRISAI