Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67518.t1 | XP_024640934.1 | 96.9 | 227 | 7 | 0 | 1 | 227 | 1 | 227 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67518.t1 | Q93VH2 | 38.5 | 182 | 105 | 4 | 41 | 217 | 137 | 316 | 4.7e-27 | 122.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67518.t1 | G7JYS6 | 96.9 | 227 | 7 | 0 | 1 | 227 | 100 | 326 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051666 | MS.gene67518 | -0.81201 | 5.26E-51 | -1.69E-46 |
| MS.gene053104 | MS.gene67518 | -0.808407 | 3.15E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene67518 | -0.802253 | 6.13E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene67518 | -0.804566 | 2.03E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene67518 | -0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene67518 | -0.809552 | 1.79E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene67518 | -0.81576 | 7.84E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene67518 | -0.833041 | 6.70E-56 | -1.69E-46 |
| MS.gene060818 | MS.gene67518 | -0.836143 | 1.11E-56 | -1.69E-46 |
| MS.gene060837 | MS.gene67518 | -0.802687 | 4.98E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene67518 | -0.817556 | 3.10E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67518.t1 | MTR_5g023110 | 96.916 | 227 | 7 | 0 | 1 | 227 | 100 | 326 | 2.18e-166 | 462 |
| MS.gene67518.t1 | MTR_3g112160 | 36.559 | 186 | 111 | 4 | 41 | 221 | 130 | 313 | 1.18e-32 | 120 |
| MS.gene67518.t1 | MTR_1g022485 | 34.946 | 186 | 114 | 4 | 41 | 221 | 167 | 350 | 1.09e-28 | 110 |
| MS.gene67518.t1 | MTR_3g112160 | 39.823 | 113 | 65 | 3 | 34 | 144 | 122 | 233 | 1.22e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67518.t1 | AT5G66050 | 52.632 | 228 | 103 | 3 | 1 | 224 | 5 | 231 | 1.59e-81 | 244 |
| MS.gene67518.t1 | AT5G66050 | 52.632 | 228 | 103 | 3 | 1 | 224 | 99 | 325 | 2.57e-80 | 244 |
| MS.gene67518.t1 | AT5G66050 | 52.423 | 227 | 103 | 3 | 1 | 223 | 99 | 324 | 8.62e-80 | 242 |
| MS.gene67518.t1 | AT5G66050 | 51.675 | 209 | 96 | 3 | 1 | 205 | 99 | 306 | 1.75e-70 | 218 |
| MS.gene67518.t1 | AT1G19660 | 38.462 | 182 | 105 | 4 | 41 | 217 | 137 | 316 | 6.89e-34 | 124 |
| MS.gene67518.t1 | AT1G19660 | 38.462 | 182 | 105 | 4 | 41 | 217 | 137 | 316 | 6.89e-34 | 124 |
| MS.gene67518.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene67518.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene67518.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene67518.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene67518.t1 | AT1G19660 | 36.364 | 176 | 105 | 4 | 41 | 211 | 137 | 310 | 1.13e-28 | 110 |
Find 38 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTATTTGCAACATTAA+TGG | 0.190657 | 5.4:-14857208 | None:intergenic |
| ATTTCTTTACTTACATATAT+TGG | 0.231030 | 5.4:-14857392 | None:intergenic |
| TTTACTCTTTCAGGTGATAA+TGG | 0.294692 | 5.4:+14856997 | MS.gene67518:intron |
| AGTTCTTGAGCTACCGAATC+TGG | 0.317594 | 5.4:-14857641 | None:intergenic |
| CAACTAGGTTATTCACAAAC+TGG | 0.340562 | 5.4:-14856310 | None:intergenic |
| TACCGAATCTGGACCATCTA+TGG | 0.358074 | 5.4:-14857630 | None:intergenic |
| TATGTTCTGCCCATTGTTGT+AGG | 0.358421 | 5.4:+14856046 | MS.gene67518:CDS |
| GGGCAGAGTGCATAATAAAA+AGG | 0.382577 | 5.4:+14857451 | MS.gene67518:CDS |
| TTTATGATGTATTGCTTGAC+AGG | 0.409824 | 5.4:+14857477 | MS.gene67518:CDS |
| GGTTATTCACAAACTGGAAC+TGG | 0.445405 | 5.4:-14856304 | None:intergenic |
| GTTTGTTACAGTGCCATAGA+TGG | 0.457604 | 5.4:+14857617 | MS.gene67518:intron |
| TGCCATAGATGGTCCAGATT+CGG | 0.469346 | 5.4:+14857628 | MS.gene67518:CDS |
| TGCCATATTGCAGGATTGGC+CGG | 0.472759 | 5.4:+14856280 | MS.gene67518:intron |
| CATGATCTAGTCTTTCAACT+AGG | 0.480955 | 5.4:-14856325 | None:intergenic |
| ATAAGACTCGGCTATGGAAT+GGG | 0.490306 | 5.4:+14857431 | MS.gene67518:CDS |
| TATAAGACTCGGCTATGGAA+TGG | 0.494787 | 5.4:+14857430 | MS.gene67518:CDS |
| GCATACATACCTACAACAAT+GGG | 0.495198 | 5.4:-14856055 | None:intergenic |
| TGCAACATTAATGGCATCTG+AGG | 0.495726 | 5.4:-14857199 | None:intergenic |
| AGCATACATACCTACAACAA+TGG | 0.501223 | 5.4:-14856056 | None:intergenic |
| TTCACAAACTGGAACTGGTC+CGG | 0.513315 | 5.4:-14856299 | None:intergenic |
| TTTCTCAAGATTTCTTGTGA+TGG | 0.525235 | 5.4:+14856019 | MS.gene67518:CDS |
| AAATCTTCGTAAATCATCTC+AGG | 0.525481 | 5.4:+14857889 | MS.gene67518:CDS |
| GAAAAGTGATATTATTAGTG+TGG | 0.530123 | 5.4:+14857167 | MS.gene67518:CDS |
| TACCTGGCTGAGGTACAATC+TGG | 0.538203 | 5.4:-14857056 | None:intergenic |
| TGCCAGATTGTACCTCAGCC+AGG | 0.542240 | 5.4:+14857054 | MS.gene67518:CDS |
| GACGCTATAAGACTCGGCTA+TGG | 0.548905 | 5.4:+14857425 | MS.gene67518:CDS |
| GCAACATTAATGGCATCTGA+GGG | 0.557171 | 5.4:-14857198 | None:intergenic |
| TCCAGAAAATAGCTCGAGAA+GGG | 0.576030 | 5.4:+14855943 | MS.gene67518:CDS |
| TATGCATTTAGCTATCAAGC+AGG | 0.596160 | 5.4:+14857679 | MS.gene67518:CDS |
| ATAGTAGTTTATTCAGACAA+GGG | 0.597464 | 5.4:+14855966 | MS.gene67518:CDS |
| TTCACAGACGCTATAAGACT+CGG | 0.599122 | 5.4:+14857419 | MS.gene67518:CDS |
| TAATGTTGCAAATAAATGCA+AGG | 0.602512 | 5.4:+14857212 | MS.gene67518:CDS |
| TTCCAGAAAATAGCTCGAGA+AGG | 0.604172 | 5.4:+14855942 | MS.gene67518:CDS |
| GATAGTAGTTTATTCAGACA+AGG | 0.606215 | 5.4:+14855965 | MS.gene67518:CDS |
| CAGGAAAGATTTAATGACGC+AGG | 0.608205 | 5.4:+14857698 | MS.gene67518:CDS |
| AAGTTGCCAATACCTGGCTG+AGG | 0.635842 | 5.4:-14857066 | None:intergenic |
| CAACATTAATGGCATCTGAG+GGG | 0.647803 | 5.4:-14857197 | None:intergenic |
| TGAAGTGGAACAAGAGATCG+AGG | 0.688028 | 5.4:+14856187 | MS.gene67518:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATTTTGATTTTTTAA+AGG | + | chr5.4:14857259-14857278 | MS.gene67518:intron | 10.0% |
| !!! | AGAAATTTTGATTTTTTAAA+GGG | + | chr5.4:14857260-14857279 | MS.gene67518:intron | 10.0% |
| !! | ATTTCTTTACTTACATATAT+TGG | - | chr5.4:14857395-14857414 | None:intergenic | 15.0% |
| !! | CAAATATAAAAATCATAAAG+AGG | - | chr5.4:14857359-14857378 | None:intergenic | 15.0% |
| !!! | GAAATTTTGATTTTTTAAAG+GGG | + | chr5.4:14857261-14857280 | MS.gene67518:intron | 15.0% |
| !! | AAAAATCAAAATTTCTTGAC+AGG | - | chr5.4:14857256-14857275 | None:intergenic | 20.0% |
| !! | AAAATCAAAATTTCTTGACA+GGG | - | chr5.4:14857255-14857274 | None:intergenic | 20.0% |
| !! | ACTAAAACAGAAAGAATTAT+TGG | + | chr5.4:14856815-14856834 | MS.gene67518:intron | 20.0% |
| !! | CAATTTGAATAAAGTTAAAC+AGG | + | chr5.4:14856852-14856871 | MS.gene67518:intron | 20.0% |
| !! | TTATATGTTAGGTATAGTTT+AGG | + | chr5.4:14856451-14856470 | MS.gene67518:intron | 20.0% |
| !!! | AATAAAAAAGCATAACAAGA+AGG | - | chr5.4:14857106-14857125 | None:intergenic | 20.0% |
| !!! | TAAATTCGTGTTTTATTGAA+CGG | + | chr5.4:14856116-14856135 | MS.gene67518:intron | 20.0% |
| !!! | TAATTCTTTCTGTTTTAGTA+TGG | - | chr5.4:14856814-14856833 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTTTACTCTTTC+AGG | + | chr5.4:14856988-14857007 | MS.gene67518:intron | 20.0% |
| !!! | TTTTTATATTTGATTTGTGC+AGG | + | chr5.4:14857367-14857386 | MS.gene67518:intron | 20.0% |
| ! | AAAACATTAGAACAAGGATA+AGG | - | chr5.4:14856920-14856939 | None:intergenic | 25.0% |
| ! | AATCAAAATTTCCAAGAAGA+TGG | - | chr5.4:14856536-14856555 | None:intergenic | 25.0% |
| ! | AGAAATCTTGAGAAAAATTG+TGG | - | chr5.4:14856014-14856033 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTATTCAGACAA+GGG | + | chr5.4:14855966-14855985 | MS.gene67518:CDS | 25.0% |
| ! | ATTACATTATACCATCTTCT+TGG | + | chr5.4:14856522-14856541 | MS.gene67518:intron | 25.0% |
| ! | GAAAAGTGATATTATTAGTG+TGG | + | chr5.4:14857167-14857186 | MS.gene67518:CDS | 25.0% |
| ! | GAAATCTTGAGAAAAATTGT+GGG | - | chr5.4:14856013-14856032 | None:intergenic | 25.0% |
| ! | GATGCAATTAGACTAAATAA+AGG | - | chr5.4:14856720-14856739 | None:intergenic | 25.0% |
| ! | GCATTTATTTGCAACATTAA+TGG | - | chr5.4:14857211-14857230 | None:intergenic | 25.0% |
| ! | TAATGTTGCAAATAAATGCA+AGG | + | chr5.4:14857212-14857231 | MS.gene67518:CDS | 25.0% |
| ! | TGAAATTATTTGCATGTAAG+AGG | - | chr5.4:14856879-14856898 | None:intergenic | 25.0% |
| ! | TGATTCTAAGCTTATATGTT+AGG | + | chr5.4:14856440-14856459 | MS.gene67518:intron | 25.0% |
| !! | ATATGGCATTTTATAAGGAT+CGG | - | chr5.4:14856268-14856287 | None:intergenic | 25.0% |
| !!! | ATGAGAGATTATAGCTTTTT+TGG | - | chr5.4:14856608-14856627 | None:intergenic | 25.0% |
| !!! | TGAGAGATTATAGCTTTTTT+GGG | - | chr5.4:14856607-14856626 | None:intergenic | 25.0% |
| !!! | TTTTTTGACCTGTATCTTAA+TGG | + | chr5.4:14856213-14856232 | MS.gene67518:intron | 25.0% |
| AAAAGTCAACAAACAAGCTT+AGG | - | chr5.4:14857843-14857862 | None:intergenic | 30.0% | |
| AAAGACTAGATCATGAAGTA+TGG | + | chr5.4:14856333-14856352 | MS.gene67518:intron | 30.0% | |
| AAATCTTCGTAAATCATCTC+AGG | + | chr5.4:14857889-14857908 | MS.gene67518:CDS | 30.0% | |
| ACGATATAGCATGAATGTAA+AGG | - | chr5.4:14857578-14857597 | None:intergenic | 30.0% | |
| ACGCAGGTAAAATATTGTTT+GGG | + | chr5.4:14857714-14857733 | MS.gene67518:intron | 30.0% | |
| ATATAGCATGAATGTAAAGG+AGG | - | chr5.4:14857575-14857594 | None:intergenic | 30.0% | |
| ATTAGAACAAGGATAAGGAT+GGG | - | chr5.4:14856915-14856934 | None:intergenic | 30.0% | |
| ATTTAAAAGTTGCCAATACC+TGG | - | chr5.4:14857075-14857094 | None:intergenic | 30.0% | |
| CTTATAAAATGCCATATTGC+AGG | + | chr5.4:14856271-14856290 | MS.gene67518:intron | 30.0% | |
| GATAGTAGTTTATTCAGACA+AGG | + | chr5.4:14855965-14855984 | MS.gene67518:CDS | 30.0% | |
| TGAAGCAATAGCAATGTATT+GGG | + | chr5.4:14856939-14856958 | MS.gene67518:intron | 30.0% | |
| TGATTTATTCTATGACCTAG+TGG | - | chr5.4:14856672-14856691 | None:intergenic | 30.0% | |
| TGCTTCAAAACATTAGAACA+AGG | - | chr5.4:14856926-14856945 | None:intergenic | 30.0% | |
| TTACACATCTGCAAGTATTA+TGG | + | chr5.4:14857757-14857776 | MS.gene67518:intron | 30.0% | |
| TTGAAGCAATAGCAATGTAT+TGG | + | chr5.4:14856938-14856957 | MS.gene67518:intron | 30.0% | |
| TTTATGATGTATTGCTTGAC+AGG | + | chr5.4:14857477-14857496 | MS.gene67518:CDS | 30.0% | |
| TTTCTCAAGATTTCTTGTGA+TGG | + | chr5.4:14856019-14856038 | MS.gene67518:CDS | 30.0% | |
| ! | CTGCAATATGGCATTTTATA+AGG | - | chr5.4:14856273-14856292 | None:intergenic | 30.0% |
| ! | GTTTTCAATCTGAGTTACAA+CGG | + | chr5.4:14855900-14855919 | MS.gene67518:CDS | 30.0% |
| ! | TTTACTCTTTCAGGTGATAA+TGG | + | chr5.4:14856997-14857016 | MS.gene67518:intron | 30.0% |
| !! | CTAATAATATCACTTTTCCC+TGG | - | chr5.4:14857165-14857184 | None:intergenic | 30.0% |
| AAAATGCCATATTGCAGGAT+TGG | + | chr5.4:14856276-14856295 | MS.gene67518:intron | 35.0% | |
| AAACTTGCACACAGAATCTA+TGG | - | chr5.4:14857552-14857571 | None:intergenic | 35.0% | |
| AAGCTTGAATACCCAAATCT+TGG | + | chr5.4:14857801-14857820 | MS.gene67518:intron | 35.0% | |
| AGCATACATACCTACAACAA+TGG | - | chr5.4:14856059-14856078 | None:intergenic | 35.0% | |
| AGTTTATAATTCCTTCAGCC+AGG | + | chr5.4:14857144-14857163 | MS.gene67518:intron | 35.0% | |
| CAACTAGGTTATTCACAAAC+TGG | - | chr5.4:14856313-14856332 | None:intergenic | 35.0% | |
| CATTAGAACAAGGATAAGGA+TGG | - | chr5.4:14856916-14856935 | None:intergenic | 35.0% | |
| CCATGAAAATGCCAAGATTT+GGG | - | chr5.4:14857815-14857834 | None:intergenic | 35.0% | |
| GACGCAGGTAAAATATTGTT+TGG | + | chr5.4:14857713-14857732 | MS.gene67518:intron | 35.0% | |
| GCATACATACCTACAACAAT+GGG | - | chr5.4:14856058-14856077 | None:intergenic | 35.0% | |
| GTTTATAATTCCTTCAGCCA+GGG | + | chr5.4:14857145-14857164 | MS.gene67518:intron | 35.0% | |
| TATGCATTTAGCTATCAAGC+AGG | + | chr5.4:14857679-14857698 | MS.gene67518:CDS | 35.0% | |
| TCCATGAAAATGCCAAGATT+TGG | - | chr5.4:14857816-14857835 | None:intergenic | 35.0% | |
| TTATTCTATGACCTAGTGGA+TGG | - | chr5.4:14856668-14856687 | None:intergenic | 35.0% | |
| ! | AAAGCTTTTAGATGCTGAAG+TGG | + | chr5.4:14856172-14856191 | MS.gene67518:CDS | 35.0% |
| ! | CATGATCTAGTCTTTCAACT+AGG | - | chr5.4:14856328-14856347 | None:intergenic | 35.0% |
| ! | TATTCTATGACCTAGTGGAT+GGG | - | chr5.4:14856667-14856686 | None:intergenic | 35.0% |
| !! | AGAGGTTTTGTCTAACTTCT+TGG | - | chr5.4:14857341-14857360 | None:intergenic | 35.0% |
| !! | ATTTTCTGGAAATGGTGACA+CGG | - | chr5.4:14855933-14855952 | None:intergenic | 35.0% |
| ATAAGACTCGGCTATGGAAT+GGG | + | chr5.4:14857431-14857450 | MS.gene67518:CDS | 40.0% | |
| CAACATTAATGGCATCTGAG+GGG | - | chr5.4:14857200-14857219 | None:intergenic | 40.0% | |
| CAGGAAAGATTTAATGACGC+AGG | + | chr5.4:14857698-14857717 | MS.gene67518:CDS | 40.0% | |
| CATCGATGCATATCCTATCA+CGG | - | chr5.4:14856085-14856104 | None:intergenic | 40.0% | |
| CTTCTTGGCACAAAATGCTT+AGG | - | chr5.4:14857326-14857345 | None:intergenic | 40.0% | |
| GCAACATTAATGGCATCTGA+GGG | - | chr5.4:14857201-14857220 | None:intergenic | 40.0% | |
| GCCAATGAACATTCAAGCAT+TGG | + | chr5.4:14856384-14856403 | MS.gene67518:intron | 40.0% | |
| GCCAATGCTTGAATGTTCAT+TGG | - | chr5.4:14856388-14856407 | None:intergenic | 40.0% | |
| GGGCAGAGTGCATAATAAAA+AGG | + | chr5.4:14857451-14857470 | MS.gene67518:CDS | 40.0% | |
| GGTTATTCACAAACTGGAAC+TGG | - | chr5.4:14856307-14856326 | None:intergenic | 40.0% | |
| TATAAGACTCGGCTATGGAA+TGG | + | chr5.4:14857430-14857449 | MS.gene67518:CDS | 40.0% | |
| TATGTATGCTATGCCGTGAT+AGG | + | chr5.4:14856069-14856088 | MS.gene67518:intron | 40.0% | |
| TATGTTCTGCCCATTGTTGT+AGG | + | chr5.4:14856046-14856065 | MS.gene67518:CDS | 40.0% | |
| TCCAGAAAATAGCTCGAGAA+GGG | + | chr5.4:14855943-14855962 | MS.gene67518:CDS | 40.0% | |
| TGCAACATTAATGGCATCTG+AGG | - | chr5.4:14857202-14857221 | None:intergenic | 40.0% | |
| TGCATCATTAGTCCTTCTCA+AGG | + | chr5.4:14856734-14856753 | MS.gene67518:intron | 40.0% | |
| TGGATGGGTACAGTATGATT+TGG | - | chr5.4:14856652-14856671 | None:intergenic | 40.0% | |
| TTCACAGACGCTATAAGACT+CGG | + | chr5.4:14857419-14857438 | MS.gene67518:CDS | 40.0% | |
| TTCCAGAAAATAGCTCGAGA+AGG | + | chr5.4:14855942-14855961 | MS.gene67518:CDS | 40.0% | |
| ! | AACGGTTCTTTTGTTGATGC+AGG | + | chr5.4:14856134-14856153 | MS.gene67518:intron | 40.0% |
| ! | CCCAAATCTTGGCATTTTCA+TGG | + | chr5.4:14857812-14857831 | MS.gene67518:intron | 40.0% |
| ! | GTTTGTTACAGTGCCATAGA+TGG | + | chr5.4:14857617-14857636 | MS.gene67518:intron | 40.0% |
| !! | CTCGAGCTATTTTCTGGAAA+TGG | - | chr5.4:14855941-14855960 | None:intergenic | 40.0% |
| !! | TTTTCTGGAAATGGTGACAC+GGG | - | chr5.4:14855932-14855951 | None:intergenic | 40.0% |
| !!! | AGCTTTTTTGGGAGTTCTCA+TGG | - | chr5.4:14856596-14856615 | None:intergenic | 40.0% |
| !!! | TGTTGACTTTTGCAGCTACA+TGG | + | chr5.4:14857852-14857871 | MS.gene67518:intron | 40.0% |
| ACACAGAATCTATGGTGGCA+AGG | - | chr5.4:14857544-14857563 | None:intergenic | 45.0% | |
| AGTTCTTGAGCTACCGAATC+TGG | - | chr5.4:14857644-14857663 | None:intergenic | 45.0% | |
| ATTGTACCTCAGCCAGGTAT+TGG | + | chr5.4:14857060-14857079 | MS.gene67518:intron | 45.0% | |
| CTCACACAATGTCCTTGAGA+AGG | - | chr5.4:14856749-14856768 | None:intergenic | 45.0% | |
| CTTGCACACAGAATCTATGG+TGG | - | chr5.4:14857549-14857568 | None:intergenic | 45.0% | |
| GTGCACAGCCATTAAGATAC+AGG | - | chr5.4:14856224-14856243 | None:intergenic | 45.0% | |
| TACCGAATCTGGACCATCTA+TGG | - | chr5.4:14857633-14857652 | None:intergenic | 45.0% | |
| TCATACTGTACCCATCCACT+AGG | + | chr5.4:14856654-14856673 | MS.gene67518:intron | 45.0% | |
| TGAAGTGGAACAAGAGATCG+AGG | + | chr5.4:14856187-14856206 | MS.gene67518:CDS | 45.0% | |
| TGCCATAGATGGTCCAGATT+CGG | + | chr5.4:14857628-14857647 | MS.gene67518:CDS | 45.0% | |
| TGGGTATTCAAGCTTGCAGA+AGG | - | chr5.4:14857796-14857815 | None:intergenic | 45.0% | |
| TTCACAAACTGGAACTGGTC+CGG | - | chr5.4:14856302-14856321 | None:intergenic | 45.0% | |
| !! | TATCACTTTTCCCTGGCTGA+AGG | - | chr5.4:14857158-14857177 | None:intergenic | 45.0% |
| !! | TCCCTTCTCGAGCTATTTTC+TGG | - | chr5.4:14855947-14855966 | None:intergenic | 45.0% |
| AAGTTGCCAATACCTGGCTG+AGG | - | chr5.4:14857069-14857088 | None:intergenic | 50.0% | |
| CAAGGATGCTACAGGTGACA+CGG | - | chr5.4:14857526-14857545 | None:intergenic | 50.0% | |
| GACGCTATAAGACTCGGCTA+TGG | + | chr5.4:14857425-14857444 | MS.gene67518:CDS | 50.0% | |
| TACCTGGCTGAGGTACAATC+TGG | - | chr5.4:14857059-14857078 | None:intergenic | 50.0% | |
| TATGGTGGCAAGGATGCTAC+AGG | - | chr5.4:14857534-14857553 | None:intergenic | 50.0% | |
| ! | TGCCATATTGCAGGATTGGC+CGG | + | chr5.4:14856280-14856299 | MS.gene67518:intron | 50.0% |
| GTCCGGCCAATCCTGCAATA+TGG | - | chr5.4:14856285-14856304 | None:intergenic | 55.0% | |
| TGCCAGATTGTACCTCAGCC+AGG | + | chr5.4:14857054-14857073 | MS.gene67518:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 14855887 | 14857919 | 14855887 | ID=MS.gene67518 |
| chr5.4 | mRNA | 14855887 | 14857919 | 14855887 | ID=MS.gene67518.t1;Parent=MS.gene67518 |
| chr5.4 | exon | 14855887 | 14856067 | 14855887 | ID=MS.gene67518.t1.exon1;Parent=MS.gene67518.t1 |
| chr5.4 | CDS | 14855887 | 14856067 | 14855887 | ID=cds.MS.gene67518.t1;Parent=MS.gene67518.t1 |
| chr5.4 | exon | 14856156 | 14856208 | 14856156 | ID=MS.gene67518.t1.exon2;Parent=MS.gene67518.t1 |
| chr5.4 | CDS | 14856156 | 14856208 | 14856156 | ID=cds.MS.gene67518.t1;Parent=MS.gene67518.t1 |
| chr5.4 | exon | 14856293 | 14856349 | 14856293 | ID=MS.gene67518.t1.exon3;Parent=MS.gene67518.t1 |
| chr5.4 | CDS | 14856293 | 14856349 | 14856293 | ID=cds.MS.gene67518.t1;Parent=MS.gene67518.t1 |
| chr5.4 | exon | 14857010 | 14857075 | 14857010 | ID=MS.gene67518.t1.exon4;Parent=MS.gene67518.t1 |
| chr5.4 | CDS | 14857010 | 14857075 | 14857010 | ID=cds.MS.gene67518.t1;Parent=MS.gene67518.t1 |
| chr5.4 | exon | 14857162 | 14857233 | 14857162 | ID=MS.gene67518.t1.exon5;Parent=MS.gene67518.t1 |
| chr5.4 | CDS | 14857162 | 14857233 | 14857162 | ID=cds.MS.gene67518.t1;Parent=MS.gene67518.t1 |
| chr5.4 | exon | 14857389 | 14857498 | 14857389 | ID=MS.gene67518.t1.exon6;Parent=MS.gene67518.t1 |
| chr5.4 | CDS | 14857389 | 14857498 | 14857389 | ID=cds.MS.gene67518.t1;Parent=MS.gene67518.t1 |
| chr5.4 | exon | 14857628 | 14857719 | 14857628 | ID=MS.gene67518.t1.exon7;Parent=MS.gene67518.t1 |
| chr5.4 | CDS | 14857628 | 14857719 | 14857628 | ID=cds.MS.gene67518.t1;Parent=MS.gene67518.t1 |
| chr5.4 | exon | 14857867 | 14857919 | 14857867 | ID=MS.gene67518.t1.exon8;Parent=MS.gene67518.t1 |
| chr5.4 | CDS | 14857867 | 14857919 | 14857867 | ID=cds.MS.gene67518.t1;Parent=MS.gene67518.t1 |
| Gene Sequence |
| Protein sequence |
