AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051666


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051666.t1 MTR_1g017450 95.902 244 8 2 3 245 21 263 2.61e-167 462
MS.gene051666.t1 MTR_1g017450 94.372 231 13 0 7 237 25 255 2.78e-145 407
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051666.t1 AT1G44920 61.290 248 86 5 5 245 14 258 3.51e-98 287

Find 46 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTTCTGGTGTTGAATTT+AGG 0.280781 1.3:-5140885 None:intergenic
AGAGATTGAAGTGATGAATT+TGG 0.292633 1.3:-5140835 None:intergenic
TCAGGCCATTTGCCTAACTA+TGG 0.307108 1.3:+5143318 MS.gene051666:CDS
GGCAGATAGGAATTGCAATA+AGG 0.319499 1.3:+5143286 MS.gene051666:intron
GGGTCTAATGAAGGTGCTTC+TGG 0.321486 1.3:-5140898 None:intergenic
CCAAACATACCAGCTATAAA+AGG 0.329020 1.3:-5141343 None:intergenic
GTCTATGTTTCCTTCAGCTT+TGG 0.332013 1.3:-5140937 None:intergenic
TGCAGTAGCAATGACGCCTT+TGG 0.338369 1.3:-5141884 None:intergenic
GAATTTAGGTGGTTGATTAA+TGG 0.352205 1.3:-5140871 None:intergenic
AGGCGTGTAGCTCTGTTTGC+TGG 0.388205 1.3:+5141226 MS.gene051666:intron
CTCTTCTTACTATTGTCAAC+TGG 0.401605 1.3:-5143414 None:intergenic
GCAATAAGGGCAGCAAAATC+AGG 0.408856 1.3:+5143300 MS.gene051666:CDS
TGACAAGGATGTTCCATTAG+AGG 0.413397 1.3:+5141019 MS.gene051666:CDS
ATACGAGATGAAGAGTTGTT+TGG 0.425511 1.3:-5141062 None:intergenic
TTAGGTGCTTACTTCCTTGG+AGG 0.440953 1.3:+5141826 MS.gene051666:CDS
AACTGAATAACACCCTCTAA+TGG 0.444731 1.3:-5141032 None:intergenic
GTTTGCTGGTGGTGATGTGT+TGG 0.448054 1.3:+5141240 MS.gene051666:CDS
GCAGATAGGAATTGCAATAA+GGG 0.466853 1.3:+5143287 MS.gene051666:intron
TCATTGCTACTGCAAAATCA+TGG 0.467859 1.3:+5141893 MS.gene051666:CDS
CAAAACCATAGTTAGGCAAA+TGG 0.490644 1.3:-5143323 None:intergenic
CTGCAAAATCATGGGCTGTA+GGG 0.498651 1.3:+5141902 MS.gene051666:CDS
ACTGCAAAATCATGGGCTGT+AGG 0.508711 1.3:+5141901 MS.gene051666:CDS
ACTAATACAAAACCATAGTT+AGG 0.511253 1.3:-5143330 None:intergenic
GCAGTAGCAATGACGCCTTT+GGG 0.531373 1.3:-5141883 None:intergenic
GGTTGAAGAGTTTGAAGACA+TGG 0.533650 1.3:-5140814 None:intergenic
TTGATCATTGGCAAAAGAAG+AGG 0.542935 1.3:-5140982 None:intergenic
AGCTTCTCACATCATTAGTA+CGG 0.543490 1.3:+5143600 MS.gene051666:intron
CTTCTGGTGTTGAATTTAGG+TGG 0.547043 1.3:-5140882 None:intergenic
GAAGATGGGCGTGGAATGAA+TGG 0.558299 1.3:+5141856 MS.gene051666:CDS
TGATCATTGGCAAAAGAAGA+GGG 0.564070 1.3:-5140981 None:intergenic
TGATTAATGGAGAATTGTTG+TGG 0.564881 1.3:-5140858 None:intergenic
TTGGCTAGTGTAAGATGCAA+GGG 0.569643 1.3:-5140918 None:intergenic
CATTGCTACTGCAAAATCAT+GGG 0.569767 1.3:+5141894 MS.gene051666:CDS
ACTATTGTCAACTGGAAGAA+CGG 0.577024 1.3:-5143406 None:intergenic
TTTGGCTAGTGTAAGATGCA+AGG 0.583472 1.3:-5140919 None:intergenic
GACAAGGATGTTCCATTAGA+GGG 0.603592 1.3:+5141020 MS.gene051666:CDS
AAGATGCAAGGGTCTAATGA+AGG 0.606568 1.3:-5140907 None:intergenic
TCACATCATTAGTACGGCGG+TGG 0.611971 1.3:+5143606 MS.gene051666:CDS
CTTACACTAGCCAAAGCTGA+AGG 0.620752 1.3:+5140927 MS.gene051666:CDS
CATCTTCACTAAAACCTCCA+AGG 0.627812 1.3:-5141840 None:intergenic
ACAATTGGAAGATATAGTCA+TGG 0.628651 1.3:+5141280 MS.gene051666:CDS
CGTGTAGCTCTGTTTGCTGG+TGG 0.629973 1.3:+5141229 MS.gene051666:CDS
GGAATGAATGGTCTACCCAA+AGG 0.648080 1.3:+5141868 MS.gene051666:CDS
TTCTCACATCATTAGTACGG+CGG 0.687718 1.3:+5143603 MS.gene051666:CDS
AAAGTTCAAAGGGACTTCCG+CGG 0.704061 1.3:-5143449 None:intergenic
AAGAGTGATGTCTATCGCCG+CGG 0.738642 1.3:+5143432 MS.gene051666:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAAGTTTCATTTA+TGG - chr1.3:5143015-5143034 None:intergenic 10.0%
!!! AACATTTTTGTTTTTATTTT+GGG + chr1.3:5141743-5141762 MS.gene051666:intron 10.0%
!! AAAATTTAAAAAAGAATGAG+GGG + chr1.3:5142659-5142678 MS.gene051666:intron 15.0%
!! GAAAATTTAAAAAAGAATGA+GGG + chr1.3:5142658-5142677 MS.gene051666:intron 15.0%
!! TGAAAATTTAAAAAAGAATG+AGG + chr1.3:5142657-5142676 MS.gene051666:intron 15.0%
!!! ACATTTTTGTTTTTATTTTG+GGG + chr1.3:5141744-5141763 MS.gene051666:intron 15.0%
!!! GAACATTTTTGTTTTTATTT+TGG + chr1.3:5141742-5141761 MS.gene051666:intron 15.0%
!!! GTTGTTTTTTTATGTAAAAA+TGG + chr1.3:5141131-5141150 MS.gene051666:intron 15.0%
!!! TTTAATCTTTTTTAACTTCT+TGG + chr1.3:5143265-5143284 MS.gene051666:intron 15.0%
!! AAAAATGCAGTAATTCTTTA+GGG + chr1.3:5142770-5142789 MS.gene051666:intron 20.0%
!! TACAACTTCTGTTAATAATT+TGG + chr1.3:5142207-5142226 MS.gene051666:intron 20.0%
!!! ACTTTATGTGAATTTTTATC+TGG + chr1.3:5141156-5141175 MS.gene051666:intron 20.0%
!!! ATGATAGATTTGAAATTTGT+TGG + chr1.3:5141774-5141793 MS.gene051666:intron 20.0%
!!! ATGTCTTTTGTTAGTAAATT+TGG + chr1.3:5142140-5142159 MS.gene051666:intron 20.0%
!!! CTTTATGTGAATTTTTATCT+GGG + chr1.3:5141157-5141176 MS.gene051666:intron 20.0%
! AAAAAAATTGCCCTTAGTAA+GGG + chr1.3:5143182-5143201 MS.gene051666:intron 25.0%
! AACAAAAACAGTTTGATCAT+TGG - chr1.3:5140997-5141016 None:intergenic 25.0%
! AACAAACCTTCAATATGAAA+TGG - chr1.3:5141602-5141621 None:intergenic 25.0%
! ACTAATACAAAACCATAGTT+AGG - chr1.3:5143333-5143352 None:intergenic 25.0%
! CCATAATTTCGATACATTTA+GGG + chr1.3:5142861-5142880 MS.gene051666:intron 25.0%
! GAAAAATGCAGTAATTCTTT+AGG + chr1.3:5142769-5142788 MS.gene051666:intron 25.0%
! TCATATAAATGCTCATGTAT+TGG + chr1.3:5142521-5142540 MS.gene051666:intron 25.0%
! TCCATAATTTCGATACATTT+AGG + chr1.3:5142860-5142879 MS.gene051666:intron 25.0%
! TTATTGCATTACTTGGAAAT+TGG + chr1.3:5141959-5141978 MS.gene051666:intron 25.0%
! TTCATCTCGTATTGAAAAAT+GGG + chr1.3:5141073-5141092 MS.gene051666:CDS 25.0%
! TTCATTGATCAAACTTACAT+TGG + chr1.3:5141645-5141664 MS.gene051666:intron 25.0%
! TTGTTAGTAAATTTGGTTGT+CGG + chr1.3:5142147-5142166 MS.gene051666:intron 25.0%
!! ATGCATTCAATTTGAAGTAT+CGG - chr1.3:5141488-5141507 None:intergenic 25.0%
!! ATGTCTTTTGTTAGTTAGTT+TGG + chr1.3:5142176-5142195 MS.gene051666:intron 25.0%
!! TAGCATAATTTAGAGCTAAT+TGG - chr1.3:5142624-5142643 None:intergenic 25.0%
!! TTTATCCTAAAAGAGCTTTT+AGG - chr1.3:5142480-5142499 None:intergenic 25.0%
!!! AATGATCAAACTGTTTTTGT+TGG + chr1.3:5140996-5141015 MS.gene051666:CDS 25.0%
!!! GTTTTTGTTGTTATTGTTTG+TGG + chr1.3:5141179-5141198 MS.gene051666:intron 25.0%
!!! TTCTAGTTCTTAAATATGTG+TGG + chr1.3:5142094-5142113 MS.gene051666:intron 25.0%
!!! TTGCTTTTGTTTTCAACAAT+TGG + chr1.3:5141265-5141284 MS.gene051666:CDS 25.0%
!!! TTTTGGTTCATAAATATGTG+AGG - chr1.3:5142896-5142915 None:intergenic 25.0%
AAACCTTCAATATGAAATGG+TGG - chr1.3:5141599-5141618 None:intergenic 30.0%
AACTAACAAAAGACACGTTT+AGG - chr1.3:5142801-5142820 None:intergenic 30.0%
AATGCTAGGGAAAAAATTTG+TGG - chr1.3:5141999-5142018 None:intergenic 30.0%
ACAATTGGAAGATATAGTCA+TGG + chr1.3:5141280-5141299 MS.gene051666:CDS 30.0%
ACAGCTGCATTTAATTCATA+GGG + chr1.3:5143101-5143120 MS.gene051666:intron 30.0%
AGAGATTGAAGTGATGAATT+TGG - chr1.3:5140838-5140857 None:intergenic 30.0%
ATGTACCTCAAAAAGTTCAA+AGG - chr1.3:5143463-5143482 None:intergenic 30.0%
CAATGCCTCACAAAATAATT+TGG + chr1.3:5142263-5142282 MS.gene051666:intron 30.0%
CATAATTTCGATACATTCAG+AGG + chr1.3:5142232-5142251 MS.gene051666:intron 30.0%
CCCATTTAACTGTAAAATGT+CGG - chr1.3:5141552-5141571 None:intergenic 30.0%
CCCTAAATGTATCGAAATTA+TGG - chr1.3:5142864-5142883 None:intergenic 30.0%
CTCTGAATGTATCGAAATTA+TGG - chr1.3:5142234-5142253 None:intergenic 30.0%
CTTCATCTCGTATTGAAAAA+TGG + chr1.3:5141072-5141091 MS.gene051666:CDS 30.0%
GAAAAAAATTGCCCTTAGTA+AGG + chr1.3:5143181-5143200 MS.gene051666:intron 30.0%
GAACACTTGAATCAATAGTT+AGG + chr1.3:5142310-5142329 MS.gene051666:intron 30.0%
GAATTTAGGTGGTTGATTAA+TGG - chr1.3:5140874-5140893 None:intergenic 30.0%
GGAAAAAATTTGTGGAAAGA+TGG - chr1.3:5141991-5142010 None:intergenic 30.0%
GTTATTGTTTGTGGTTATGA+GGG + chr1.3:5141188-5141207 MS.gene051666:intron 30.0%
TAAACATAACCTGACAAAGT+TGG + chr1.3:5142340-5142359 MS.gene051666:intron 30.0%
TATCATCAAAGAAGCTTTCA+AGG - chr1.3:5142729-5142748 None:intergenic 30.0%
TCATCTCGTATTGAAAAATG+GGG + chr1.3:5141074-5141093 MS.gene051666:CDS 30.0%
TCTAAGCTGTAATTAGCAAA+TGG - chr1.3:5143082-5143101 None:intergenic 30.0%
TGATTAATGGAGAATTGTTG+TGG - chr1.3:5140861-5140880 None:intergenic 30.0%
TGTACCTCAAAAAGTTCAAA+GGG - chr1.3:5143462-5143481 None:intergenic 30.0%
TGTTATTGTTTGTGGTTATG+AGG + chr1.3:5141187-5141206 MS.gene051666:intron 30.0%
TTTGTTGGATGTGTTTCAAT+GGG + chr1.3:5141789-5141808 MS.gene051666:intron 30.0%
! AAACGAGTAAACAGTCATTT+TGG - chr1.3:5142913-5142932 None:intergenic 30.0%
! ACCGACATTTTACAGTTAAA+TGG + chr1.3:5141548-5141567 MS.gene051666:intron 30.0%
! ATTTGTTGGATGTGTTTCAA+TGG + chr1.3:5141788-5141807 MS.gene051666:intron 30.0%
! CCGACATTTTACAGTTAAAT+GGG + chr1.3:5141549-5141568 MS.gene051666:intron 30.0%
! GAAAAACTGCATCGATATTA+TGG - chr1.3:5142290-5142309 None:intergenic 30.0%
! GATCAAACTTACATTGGTTA+CGG + chr1.3:5141651-5141670 MS.gene051666:intron 30.0%
! GTGTCTTTTGTTAGTTAGTT+TGG + chr1.3:5142805-5142824 MS.gene051666:intron 30.0%
! TGAAAGCTTCTTTGATGATA+GGG + chr1.3:5142729-5142748 MS.gene051666:intron 30.0%
! TTGAAAGCTTCTTTGATGAT+AGG + chr1.3:5142728-5142747 MS.gene051666:intron 30.0%
!! ATGGACCAAATTATTTTGTG+AGG - chr1.3:5142271-5142290 None:intergenic 30.0%
!! TTTTTCAACTCAACCAAAAG+TGG - chr1.3:5143167-5143186 None:intergenic 30.0%
!!! TTTTTAACTTCTTGGCAGAT+AGG + chr1.3:5143273-5143292 MS.gene051666:intron 30.0%
AAAACATGTCACCCTTACTA+AGG - chr1.3:5143196-5143215 None:intergenic 35.0%
AAACATGTCACCCTTACTAA+GGG - chr1.3:5143195-5143214 None:intergenic 35.0%
AAAGATAGTTAGTCGTGTCA+TGG - chr1.3:5142377-5142396 None:intergenic 35.0%
AACTGAATAACACCCTCTAA+TGG - chr1.3:5141035-5141054 None:intergenic 35.0%
AAGAAGCCATTCAACTTACA+GGG - chr1.3:5141930-5141949 None:intergenic 35.0%
AAGATAGTTAGTCGTGTCAT+GGG - chr1.3:5142376-5142395 None:intergenic 35.0%
ACAAAAATGTTCAAGCCACA+AGG - chr1.3:5141734-5141753 None:intergenic 35.0%
ACTATTGTCAACTGGAAGAA+CGG - chr1.3:5143409-5143428 None:intergenic 35.0%
AGCTTCTCACATCATTAGTA+CGG + chr1.3:5143600-5143619 MS.gene051666:intron 35.0%
ATACGAGATGAAGAGTTGTT+TGG - chr1.3:5141065-5141084 None:intergenic 35.0%
CAAAACCATAGTTAGGCAAA+TGG - chr1.3:5143326-5143345 None:intergenic 35.0%
CATCTCGTATTGAAAAATGG+GGG + chr1.3:5141075-5141094 MS.gene051666:CDS 35.0%
CATTGCTACTGCAAAATCAT+GGG + chr1.3:5141894-5141913 MS.gene051666:CDS 35.0%
CCAAACATACCAGCTATAAA+AGG - chr1.3:5141346-5141365 None:intergenic 35.0%
CTCTTCTTACTATTGTCAAC+TGG - chr1.3:5143417-5143436 None:intergenic 35.0%
GACAGCTGCATTTAATTCAT+AGG + chr1.3:5143100-5143119 MS.gene051666:intron 35.0%
GCAGATAGGAATTGCAATAA+GGG + chr1.3:5143287-5143306 MS.gene051666:intron 35.0%
GTGAAGAGTTGCAATCAAAT+AGG + chr1.3:5141438-5141457 MS.gene051666:intron 35.0%
GTGAAGCTTATTGCATTACT+TGG + chr1.3:5141952-5141971 MS.gene051666:intron 35.0%
TAACTGTAAAATGTCGGTGT+CGG - chr1.3:5141546-5141565 None:intergenic 35.0%
TAAGAAGCCATTCAACTTAC+AGG - chr1.3:5141931-5141950 None:intergenic 35.0%
TCATTGCTACTGCAAAATCA+TGG + chr1.3:5141893-5141912 MS.gene051666:CDS 35.0%
TGATCATTGGCAAAAGAAGA+GGG - chr1.3:5140984-5141003 None:intergenic 35.0%
TGTCGGATATTGATATGTGT+CGG - chr1.3:5141529-5141548 None:intergenic 35.0%
TTGATCATTGGCAAAAGAAG+AGG - chr1.3:5140985-5141004 None:intergenic 35.0%
! AAGTCCCTTTGAACTTTTTG+AGG + chr1.3:5143455-5143474 MS.gene051666:CDS 35.0%
! CCTTTTATAGCTGGTATGTT+TGG + chr1.3:5141343-5141362 MS.gene051666:intron 35.0%
!! GGTTTTGTATTAGTGAGTCT+TGG + chr1.3:5143339-5143358 MS.gene051666:CDS 35.0%
!! TTGGAGGTTTTAGTGAAGAT+GGG + chr1.3:5141842-5141861 MS.gene051666:CDS 35.0%
!!! AACTGTTTTTGTTGGTGACA+AGG + chr1.3:5141004-5141023 MS.gene051666:CDS 35.0%
!!! AGCCACAAGGTTTTAAAAAC+AGG - chr1.3:5141721-5141740 None:intergenic 35.0%
!!! GACCTGTTTTTAAAACCTTG+TGG + chr1.3:5141716-5141735 MS.gene051666:intron 35.0%
!!! TTGAACTTTGAGACCACTTT+TGG + chr1.3:5143151-5143170 MS.gene051666:intron 35.0%
!!! TTTTTAGGTGCTTACTTCCT+TGG + chr1.3:5141823-5141842 MS.gene051666:CDS 35.0%
AACACAGCTACACTAATGCT+AGG - chr1.3:5142013-5142032 None:intergenic 40.0%
AAGATGCAAGGGTCTAATGA+AGG - chr1.3:5140910-5140929 None:intergenic 40.0%
ACACAGCTACACTAATGCTA+GGG - chr1.3:5142012-5142031 None:intergenic 40.0%
AGATAGTTAGTCGTGTCATG+GGG - chr1.3:5142375-5142394 None:intergenic 40.0%
CATCTTCACTAAAACCTCCA+AGG - chr1.3:5141843-5141862 None:intergenic 40.0%
GAATGCATGTCTAGCATGTT+TGG + chr1.3:5141500-5141519 MS.gene051666:intron 40.0%
GACAAGGATGTTCCATTAGA+GGG + chr1.3:5141020-5141039 MS.gene051666:CDS 40.0%
GCACCACCATTTCATATTGA+AGG + chr1.3:5141593-5141612 MS.gene051666:intron 40.0%
GGCAGATAGGAATTGCAATA+AGG + chr1.3:5143286-5143305 MS.gene051666:intron 40.0%
GTCTATGTTTCCTTCAGCTT+TGG - chr1.3:5140940-5140959 None:intergenic 40.0%
TGACAAGGATGTTCCATTAG+AGG + chr1.3:5141019-5141038 MS.gene051666:CDS 40.0%
TTCTCACATCATTAGTACGG+CGG + chr1.3:5143603-5143622 MS.gene051666:CDS 40.0%
TTGGCTAGTGTAAGATGCAA+GGG - chr1.3:5140921-5140940 None:intergenic 40.0%
TTTCTCTCGCTTCAATTGTG+TGG - chr1.3:5142689-5142708 None:intergenic 40.0%
TTTGGCTAGTGTAAGATGCA+AGG - chr1.3:5140922-5140941 None:intergenic 40.0%
! ACTGCTGATCCTTTTATAGC+TGG + chr1.3:5141334-5141353 MS.gene051666:CDS 40.0%
! CATAAATATGTGAGGCGTTC+AGG - chr1.3:5142888-5142907 None:intergenic 40.0%
! CTTCTGGTGTTGAATTTAGG+TGG - chr1.3:5140885-5140904 None:intergenic 40.0%
! GCAGACCTAAAAGCTCTTTT+AGG + chr1.3:5142472-5142491 MS.gene051666:intron 40.0%
! GTGCTTCTGGTGTTGAATTT+AGG - chr1.3:5140888-5140907 None:intergenic 40.0%
! TCAGTTTTCAGCAAGATCAC+TGG - chr1.3:5143231-5143250 None:intergenic 40.0%
!! CTTGGAGGTTTTAGTGAAGA+TGG + chr1.3:5141841-5141860 MS.gene051666:CDS 40.0%
!! GCAAAAGAAGAGGGTTTTGT+AGG - chr1.3:5140975-5140994 None:intergenic 40.0%
!!! GAGGGTTGTTGTTTTGTTGT+AGG + chr1.3:5141206-5141225 MS.gene051666:intron 40.0%
AAAGTTCAAAGGGACTTCCG+CGG - chr1.3:5143452-5143471 None:intergenic 45.0%
ATGTGTTTCAATGGGTGGCA+GGG + chr1.3:5141797-5141816 MS.gene051666:intron 45.0%
CAGGTCTGCAACATCAATCT+CGG - chr1.3:5141702-5141721 None:intergenic 45.0%
CCTGACAAAGTTGGCAACAA+AGG + chr1.3:5142349-5142368 MS.gene051666:intron 45.0%
CCTTTGTTGCCAACTTTGTC+AGG - chr1.3:5142352-5142371 None:intergenic 45.0%
CTTACACTAGCCAAAGCTGA+AGG + chr1.3:5140927-5140946 MS.gene051666:CDS 45.0%
GCAATAAGGGCAGCAAAATC+AGG + chr1.3:5143300-5143319 MS.gene051666:CDS 45.0%
GGAATGAATGGTCTACCCAA+AGG + chr1.3:5141868-5141887 MS.gene051666:CDS 45.0%
GTTGGATGTGTTTCAATGGG+TGG + chr1.3:5141792-5141811 MS.gene051666:intron 45.0%
GTTTGTATGCACGTCTGTGT+TGG + chr1.3:5141619-5141638 MS.gene051666:intron 45.0%
TCAGGCCATTTGCCTAACTA+TGG + chr1.3:5143318-5143337 MS.gene051666:CDS 45.0%
TTAGGTGCTTACTTCCTTGG+AGG + chr1.3:5141826-5141845 MS.gene051666:CDS 45.0%
! ACTGCAAAATCATGGGCTGT+AGG + chr1.3:5141901-5141920 MS.gene051666:CDS 45.0%
! AGGGATCCCTGTAAGTTGAA+TGG + chr1.3:5141921-5141940 MS.gene051666:intron 45.0%
! CTGCAAAATCATGGGCTGTA+GGG + chr1.3:5141902-5141921 MS.gene051666:CDS 45.0%
! TTGATGATAGGGTCTTGTGC+AGG + chr1.3:5142740-5142759 MS.gene051666:intron 45.0%
AAGAGTGATGTCTATCGCCG+CGG + chr1.3:5143432-5143451 MS.gene051666:CDS 50.0%
GAAGATGGGCGTGGAATGAA+TGG + chr1.3:5141856-5141875 MS.gene051666:CDS 50.0%
GATGTGTTTCAATGGGTGGC+AGG + chr1.3:5141796-5141815 MS.gene051666:intron 50.0%
GCAGTAGCAATGACGCCTTT+GGG - chr1.3:5141886-5141905 None:intergenic 50.0%
TCACATCATTAGTACGGCGG+TGG + chr1.3:5143606-5143625 MS.gene051666:CDS 50.0%
TGCAGTAGCAATGACGCCTT+TGG - chr1.3:5141887-5141906 None:intergenic 50.0%
! AAATGGGCTCATGCAGCCTT+AGG + chr1.3:5141565-5141584 MS.gene051666:intron 50.0%
! AATGGGCTCATGCAGCCTTA+GGG + chr1.3:5141566-5141585 MS.gene051666:intron 50.0%
! GTTTGCTGGTGGTGATGTGT+TGG + chr1.3:5141240-5141259 MS.gene051666:CDS 50.0%
!! AATGGTGGTGCTACACCCTA+AGG - chr1.3:5141584-5141603 None:intergenic 50.0%
!! GGGTCTAATGAAGGTGCTTC+TGG - chr1.3:5140901-5140920 None:intergenic 50.0%
!! GGTTTTAGTGAAGATGGGCG+TGG + chr1.3:5141847-5141866 MS.gene051666:CDS 50.0%
TGTTTCAATGGGTGGCAGGG+TGG + chr1.3:5141800-5141819 MS.gene051666:intron 55.0%
! AGGCGTGTAGCTCTGTTTGC+TGG + chr1.3:5141226-5141245 MS.gene051666:intron 55.0%
! CGTGTAGCTCTGTTTGCTGG+TGG + chr1.3:5141229-5141248 MS.gene051666:CDS 55.0%
! TGGGTGGCAGGGTGGTTTTT+AGG + chr1.3:5141808-5141827 MS.gene051666:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 5140816 5143631 5140816 ID=MS.gene051666
chr1.3 mRNA 5140816 5143631 5140816 ID=MS.gene051666.t1;Parent=MS.gene051666
chr1.3 exon 5140816 5141096 5140816 ID=MS.gene051666.t1.exon1;Parent=MS.gene051666.t1
chr1.3 CDS 5140816 5141096 5140816 ID=cds.MS.gene051666.t1;Parent=MS.gene051666.t1
chr1.3 exon 5141228 5141355 5141228 ID=MS.gene051666.t1.exon2;Parent=MS.gene051666.t1
chr1.3 CDS 5141228 5141355 5141228 ID=cds.MS.gene051666.t1;Parent=MS.gene051666.t1
chr1.3 exon 5141818 5141930 5141818 ID=MS.gene051666.t1.exon3;Parent=MS.gene051666.t1
chr1.3 CDS 5141818 5141930 5141818 ID=cds.MS.gene051666.t1;Parent=MS.gene051666.t1
chr1.3 exon 5143291 5143476 5143291 ID=MS.gene051666.t1.exon4;Parent=MS.gene051666.t1
chr1.3 CDS 5143291 5143476 5143291 ID=cds.MS.gene051666.t1;Parent=MS.gene051666.t1
chr1.3 exon 5143602 5143631 5143602 ID=MS.gene051666.t1.exon5;Parent=MS.gene051666.t1
chr1.3 CDS 5143602 5143631 5143602 ID=cds.MS.gene051666.t1;Parent=MS.gene051666.t1
Gene Sequence

>MS.gene051666

ATGTCTTCAAACTCTTCAACCAAATTCATCACTTCAATCTCTCCACAACAATTCTCCATTAATCAACCACCTAAATTCAACACCAGAAGCACCTTCATTAGACCCTTGCATCTTACACTAGCCAAAGCTGAAGGAAACATAGACTCATCATCTTCACCTACAAAACCCTCTTCTTTTGCCAATGATCAAACTGTTTTTGTTGGTGACAAGGATGTTCCATTAGAGGGTGTTATTCAGTTTGACAAACCAAACAACTCTTCATCTCGTATTGAAAAATGGGGGTACTTTTTTTTTTTGCATTTTTTTAATGAAATTGTTGTTTTTTTATGTAAAAATGGAAACTTTATGTGAATTTTTATCTGGGTTTTTGTTGTTATTGTTTGTGGTTATGAGGGTTGTTGTTTTGTTGTAGGCGTGTAGCTCTGTTTGCTGGTGGTGATGTGTTGGCTTTGCTTTTGTTTTCAACAATTGGAAGATATAGTCATGGACTGTCTGTTTTTGACTTTGAGACTCTGCACACTGCTGATCCTTTTATAGCTGGTATGTTTGGTTTTCATGATTGTCAAATTTATGTCTTTGAATCAATGTTTTGAGTTGTTGTCGCGTCGCAATTGTTATTATTGTGAAGAGTTGCAATCAAATAGGCTCATGTAGCGTTAATACGTAGCACCGATACTTCAAATTGAATGCATGTCTAGCATGTTTGGTGTCCGACACATATCAATATCCGACACCGACATTTTACAGTTAAATGGGCTCATGCAGCCTTAGGGTGTAGCACCACCATTTCATATTGAAGGTTTGTTTGTATGCACGTCTGTGTTGGTGCTTCATTGATCAAACTTACATTGGTTACGGATACATGAAAAAAATTATATTGTAACCGAGATTGATGTTGCAGACCTGTTTTTAAAACCTTGTGGCTTGAACATTTTTGTTTTTATTTTGGGGAGAATATATGATAGATTTGAAATTTGTTGGATGTGTTTCAATGGGTGGCAGGGTGGTTTTTAGGTGCTTACTTCCTTGGAGGTTTTAGTGAAGATGGGCGTGGAATGAATGGTCTACCCAAAGGCGTCATTGCTACTGCAAAATCATGGGCTGTAGGGATCCCTGTAAGTTGAATGGCTTCTTATGTGAAGCTTATTGCATTACTTGGAAATTGGTATCATCCATCTTTCCACAAATTTTTTCCCTAGCATTAGTGTAGCTGTGTTGATATTCTCATAGTTGACATTTTTTCTTTATAGCATCTGTTTCATTGCAATTAAACAATCATTCTAGTTCTTAAATATGTGTGGCGCTGTCGCAATAGTCATTAAACATGTCTTTTGTTAGTAAATTTGGTTGTCGGTCAGTCATGTCTTTTGTTAGTTAGTTTGGTCATCGAATACAACTTCTGTTAATAATTTGGTCCATAATTTCGATACATTCAGAGGCTTTATCACAATGCCTCACAAAATAATTTGGTCCATAATATCGATGCAGTTTTTCGAACACTTGAATCAATAGTTAGGAAAAAGATAAACATAACCTGACAAAGTTGGCAACAAAGGCCCCATGACACGACTAACTATCTTTTATTTATTTATTTATTTTTATGATAAATTGATAACAAACGATACAACTATATAGAACAACAGCATGCTGATTTTTGCAGACCTAAAAGCTCTTTTAGGATAAACAACTTAATTAAGTACTTTTGTCATATAAATGCTCATGTATTGGTTATTTTTTAAAAGAGAAAATAGTTGCACTGCTTTTATATAAGTTATAAGCTGTTTTATAAGCTAAAATAAGTCAATCCAATTAGCTCTAAATTATGCTAGAAACTAAATATCTGAAAATTTAAAAAAGAATGAGGGGTAATCCACACAATTGAAGCGAGAGAAAGTAAGAGAAGAAGAATACCTTGAAAGCTTCTTTGATGATAGGGTCTTGTGCAGGATTGAAGAAAAATGCAGTAATTCTTTAGGGATTGACCTAAACGTGTCTTTTGTTAGTTAGTTTGGTTATCGAATACAACTTCTTTTAGTCAATCTAGTCCATAATTTCGATACATTTAGGGACCTGAACGCCTCACATATTTATGAACCAAAATGACTGTTTACTCGTTTTATTGTTGAAACTTTGATGCAATTTTTCGAACACTTGAAACTTTATAATTGAAGAAACTAGTTTCTTACAATAATTCAGCCATAAATGAAACTTTATATTTTACGTAAAGATTGAATAATGATTAGTTAAGTACGATGTTAGAGTTCCATTTGCTAATTACAGCTTAGACAGCTGCATTTAATTCATAGGGATGTCTAAGTGCTTCTGAGATATATTTTTGAACTTTGAGACCACTTTTGGTTGAGTTGAAAAAAATTGCCCTTAGTAAGGGTGACATGTTTTTTTTCTCTCTTTCCAGTGATCTTGCTGAAAACTGATATATTTTTTTTTTTTTAATCTTTTTTAACTTCTTGGCAGATAGGAATTGCAATAAGGGCAGCAAAATCAGGCCATTTGCCTAACTATGGTTTTGTATTAGTGAGTCTTGGAAGCACTGCTGTTTTACTAATCGCAGTCAGAGCTTTATTATACGCCGTTCTTCCAGTTGACAATAGTAAGAAGAGTGATGTCTATCGCCGCGGAAGTCCCTTTGAACTTTTTGAGGTACATAATCTTTTCATCTTTATCAGTTCTGAAGTTGTGATGTTTATATTCTGTCAAAATAAAGTTATGTATCAAAGCAATGTGATACTGAACATAATACAAAATTTGTTTCTTTTCTTTTGTAGCTTCTCACATCATTAGTACGGCGGTGGTAA

Protein sequence

>MS.gene051666.t1

MSSNSSTKFITSISPQQFSINQPPKFNTRSTFIRPLHLTLAKAEGNIDSSSSPTKPSSFANDQTVFVGDKDVPLEGVIQFDKPNNSSSRIEKWGRVALFAGGDVLALLLFSTIGRYSHGLSVFDFETLHTADPFIAGWFLGAYFLGGFSEDGRGMNGLPKGVIATAKSWAVGIPIGIAIRAAKSGHLPNYGFVLVSLGSTAVLLIAVRALLYAVLPVDNSKKSDVYRRGSPFELFELLTSLVRRW