AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68655

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68655.t1 MTR_2g450310 83.451 284 47 0 1 284 1 284 5.60e-176 495
MS.gene68655.t1 MTR_2g450510 79.225 284 59 0 1 284 1 284 9.10e-168 475
MS.gene68655.t1 MTR_1088s0010 95.238 147 7 0 1 147 1 147 1.56e-103 298
MS.gene68655.t1 MTR_2g020630 38.328 287 171 4 1 284 10 293 3.41e-69 223
MS.gene68655.t1 MTR_4g124800 41.418 268 153 4 21 284 29 296 3.51e-64 210
MS.gene68655.t1 MTR_2g043850 38.148 270 161 4 4 270 13 279 3.09e-61 202
MS.gene68655.t1 MTR_2g044140 37.778 270 162 4 4 270 13 279 9.17e-61 201
MS.gene68655.t1 MTR_1372s0010 92.405 79 6 0 147 225 1 79 8.32e-49 157
MS.gene68655.t1 MTR_1308s0010 91.379 58 5 0 227 284 1 58 2.46e-32 117
MS.gene68655.t1 MTR_7g107710 27.985 268 153 11 2 265 3 234 8.99e-18 82.8
MS.gene68655.t1 MTR_8g037880 27.381 252 126 9 5 232 4 222 8.56e-17 80.1
MS.gene68655.t1 MTR_8g037910 26.190 252 128 9 5 232 4 221 2.62e-16 77.4
MS.gene68655.t1 MTR_8g037910 26.190 252 128 9 5 232 4 221 3.04e-16 77.8
MS.gene68655.t1 MTR_8g037910 25.397 252 130 8 5 232 4 221 8.32e-16 77.4
MS.gene68655.t1 MTR_1g069275 27.778 234 132 10 7 239 27 224 1.80e-15 76.3
MS.gene68655.t1 MTR_4g051642 26.866 268 157 11 1 265 3 234 1.21e-13 70.9
MS.gene68655.t1 MTR_1g046230 27.046 281 160 15 6 281 25 265 2.11e-13 70.1
MS.gene68655.t1 MTR_3g437580 26.587 252 136 8 3 229 11 238 5.70e-13 68.6
MS.gene68655.t1 MTR_3g437580 26.587 252 136 8 3 229 11 238 6.98e-13 68.6
MS.gene68655.t1 MTR_3g109520 25.105 239 135 9 6 239 40 239 3.96e-12 66.2
MS.gene68655.t1 MTR_1g008380 24.576 236 137 11 7 239 44 241 1.09e-11 65.1
MS.gene68655.t1 MTR_3g088925 24.815 270 160 10 1 265 3 234 6.70e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68655.t1 AT1G19250 37.895 285 169 5 4 284 12 292 1.29e-64 211
MS.gene68655.t1 AT5G45180 39.526 253 141 7 4 251 12 257 6.34e-59 194
MS.gene68655.t1 AT1G62560 25.197 254 131 10 3 229 11 232 1.56e-14 73.6
MS.gene68655.t1 AT1G62560 25.197 254 131 10 3 229 11 232 2.04e-14 73.2
MS.gene68655.t1 AT1G62620 25.000 252 135 9 4 229 12 235 3.18e-14 72.4
MS.gene68655.t1 AT1G62620 25.000 252 135 9 4 229 12 235 5.32e-14 72.0
MS.gene68655.t1 AT1G63370 25.000 252 135 7 4 229 12 235 6.83e-14 71.2
MS.gene68655.t1 AT1G63370 25.000 252 135 7 4 229 12 235 1.18e-13 71.2
MS.gene68655.t1 AT4G28720 27.386 241 129 12 6 239 26 227 4.94e-13 69.3
MS.gene68655.t1 AT1G65860 22.327 318 173 11 3 279 11 295 7.91e-13 68.6
MS.gene68655.t1 AT4G32540 25.896 251 134 12 7 251 23 227 2.95e-12 66.6
MS.gene68655.t1 AT4G32540 25.896 251 134 12 7 251 23 227 3.11e-12 66.6
MS.gene68655.t1 AT1G48910 27.197 239 135 9 1 237 1 202 3.82e-12 66.2
MS.gene68655.t1 AT1G12200 25.197 254 135 7 3 229 12 237 4.46e-12 66.2
MS.gene68655.t1 AT1G12200 25.197 254 135 7 3 229 12 237 5.62e-12 66.2
MS.gene68655.t1 AT1G21430 27.706 231 128 8 1 226 1 197 3.93e-11 63.5
MS.gene68655.t1 AT4G13260 24.096 249 145 12 7 251 30 238 8.62e-11 62.0

Find 57 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTACCTTTAAAGATTTC+TGG 0.118162 2.3:-39766335 None:intergenic
TGCAAATATGCTCTACAAAT+TGG 0.214406 2.3:+39765245 MS.gene68655:CDS
GGAAGTCTTGTTTGTTAGTT+TGG 0.241397 2.3:-39765343 None:intergenic
TGGAAGTCCATTTGGTTCTA+AGG 0.280378 2.3:+39765562 MS.gene68655:CDS
AGGTAAAGTTATGCATTCTT+TGG 0.285374 2.3:+39766349 MS.gene68655:CDS
AAATGAAGTCATGGGAATTA+TGG 0.290096 2.3:+39765531 MS.gene68655:CDS
GAAACCAGTGTGTAGTTCTT+TGG 0.303585 2.3:-39766630 None:intergenic
ACGATGGCATTGGTGGAATA+TGG 0.325013 2.3:+39765294 MS.gene68655:CDS
TCTTGCACTTGTTGATTACT+TGG 0.340440 2.3:-39765410 None:intergenic
AGCTGCAGTCTTGTTGTCTA+AGG 0.341399 2.3:-39766381 None:intergenic
GACATTGCGGGCATTAATCT+TGG 0.343163 2.3:+39766664 MS.gene68655:CDS
CTTTACCTTTAAAGATTTCT+GGG 0.345088 2.3:-39766334 None:intergenic
AAAGGCCCAGAAATCTTTAA+AGG 0.357841 2.3:+39766329 MS.gene68655:CDS
CCCATGGAAAATCTGTAAAC+TGG 0.363372 2.3:-39765364 None:intergenic
TCATTGATATTGATTATGTT+GGG 0.373374 2.3:+39765495 MS.gene68655:CDS
TTGGAATTGAATCTTATGTA+TGG 0.382205 2.3:-39765470 None:intergenic
TTGTTTGTTAGTTTGGAGTT+TGG 0.394924 2.3:-39765336 None:intergenic
GTCATTGATATTGATTATGT+TGG 0.404807 2.3:+39765494 MS.gene68655:CDS
CTTTGCATTGGAAAGTATAG+TGG 0.412036 2.3:+39766275 MS.gene68655:CDS
AATTTGTAGAGCATATTTGC+AGG 0.413362 2.3:-39765243 None:intergenic
ATGCCCGCAATGTCAAAATC+TGG 0.420705 2.3:-39766655 None:intergenic
CATTTGGTTCTAAGGGAACT+TGG 0.423541 2.3:+39765570 MS.gene68655:CDS
AGAGTTACAATAGTAGGCTC+AGG 0.434337 2.3:+39766422 MS.gene68655:CDS
ATAATCAATATCAATGACTT+TGG 0.438062 2.3:-39765489 None:intergenic
TGGGAATTATGGAGTGGTAA+TGG 0.443970 2.3:+39765542 MS.gene68655:CDS
AAGTTTGTCATTCTTTGCAT+TGG 0.451719 2.3:+39766263 MS.gene68655:CDS
AACAAGAGAGTTACAATAGT+AGG 0.452094 2.3:+39766416 MS.gene68655:CDS
AGTGGTAATGGAAGTCCATT+TGG 0.462695 2.3:+39765554 MS.gene68655:CDS
GGAAGTCCATTTGGTTCTAA+GGG 0.467978 2.3:+39765563 MS.gene68655:CDS
TCGTCAGATTCGTAGACAAT+TGG 0.475201 2.3:-39765275 None:intergenic
GGCCACTTTACTTTCACCAT+TGG 0.477134 2.3:+39766759 MS.gene68655:CDS
GAATCTTATGTATGGAATGA+TGG 0.480663 2.3:-39765462 None:intergenic
AATGTTGCAATTGTTGGGGC+AGG 0.496768 2.3:+39765203 MS.gene68655:CDS
GAATCTGACGATGGCATTGG+TGG 0.504538 2.3:+39765287 MS.gene68655:CDS
CTCATGAAGAAATGAAGTCA+TGG 0.511087 2.3:+39765522 MS.gene68655:CDS
GAAATTCTTAGTATCTTCTA+CGG 0.519004 2.3:-39765600 None:intergenic
AAGTGGCCACAAGGCTAAGT+AGG 0.524274 2.3:-39766744 None:intergenic
CTAAGTAGGAATGGTTCTCC+AGG 0.528761 2.3:-39766730 None:intergenic
CAAGTTCCCTTAGAACCAAA+TGG 0.541301 2.3:-39765569 None:intergenic
ATTGTTGGGGCAGGAATAAG+TGG 0.555531 2.3:+39765212 MS.gene68655:CDS
CATTGATATTGATTATGTTG+GGG 0.562755 2.3:+39765496 MS.gene68655:CDS
TCATGAAGAAATGAAGTCAT+GGG 0.573176 2.3:+39765523 MS.gene68655:CDS
GCTGAATGTGCAAATGCAAA+TGG 0.573735 2.3:+39766467 MS.gene68655:CDS
TACCAATGGTGAAAGTAAAG+TGG 0.578127 2.3:-39766761 None:intergenic
GCCACAAGGCTAAGTAGGAA+TGG 0.579646 2.3:-39766739 None:intergenic
TACGAATCTGACGATGGCAT+TGG 0.589087 2.3:+39765284 MS.gene68655:CDS
GTACTAAAAGCTCCGCAAAA+CGG 0.593919 2.3:-39766702 None:intergenic
GAGTTACAATAGTAGGCTCA+GGG 0.602052 2.3:+39766423 MS.gene68655:CDS
ACCATTCCTACTTAGCCTTG+TGG 0.606013 2.3:+39766738 MS.gene68655:CDS
GTGAAAGTAAAGTGGCCACA+AGG 0.620197 2.3:-39766753 None:intergenic
TTTGTAAATTCAGGTTCACA+AGG 0.623646 2.3:+39766238 MS.gene68655:intron
GTTCTTTGGATAATTGTGCA+AGG 0.631927 2.3:-39766616 None:intergenic
AAGTCATGGGAATTATGGAG+TGG 0.662418 2.3:+39765536 MS.gene68655:CDS
TTCATATTTACATACCTCGG+TGG 0.678741 2.3:-39765624 None:intergenic
ATTGTCTACGAATCTGACGA+TGG 0.682809 2.3:+39765278 MS.gene68655:CDS
TTATCCAAAGAACTACACAC+TGG 0.687255 2.3:+39766626 MS.gene68655:CDS
TACTAAGAATTTCACCACCG+AGG 0.721507 2.3:+39765610 MS.gene68655:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATATTTAATTAGCTTA+AGG + chr2.3:39766153-39766172 MS.gene68655:intron 10.0%
!!! TCCTTTTTTTTTTTTTTTAT+GGG - chr2.3:39766187-39766206 None:intergenic 10.0%
!!! TTCCTTTTTTTTTTTTTTTA+TGG - chr2.3:39766188-39766207 None:intergenic 10.0%
!!! TTTAAGACAAATTTTATAAT+GGG + chr2.3:39765833-39765852 MS.gene68655:intron 10.0%
!!! TTTTTTTATTCAAAATTTGA+AGG + chr2.3:39765983-39766002 MS.gene68655:intron 10.0%
!! TCCCATAAAAAAAAAAAAAA+AGG + chr2.3:39766183-39766202 MS.gene68655:intron 15.0%
!!! GTTTAAGACAAATTTTATAA+TGG + chr2.3:39765832-39765851 MS.gene68655:intron 15.0%
!!! TTCATATTTTTTTCTTGTTT+GGG + chr2.3:39765693-39765712 MS.gene68655:intron 15.0%
!!! TTTCATATTTTTTTCTTGTT+TGG + chr2.3:39765692-39765711 MS.gene68655:intron 15.0%
!! AAAAAAATGTTGCAATTGTT+GGG + chr2.3:39765198-39765217 MS.gene68655:CDS 20.0%
!! ATAATCAATATCAATGACTT+TGG - chr2.3:39765492-39765511 None:intergenic 20.0%
!! GTTTGAATATTTGTAAATTC+AGG + chr2.3:39766229-39766248 MS.gene68655:intron 20.0%
!!! CTTCTTTTTCTTTTTCATTT+TGG + chr2.3:39765665-39765684 MS.gene68655:intron 20.0%
!!! TCATTGATATTGATTATGTT+GGG + chr2.3:39765495-39765514 MS.gene68655:CDS 20.0%
! AAAAAATGTTGCAATTGTTG+GGG + chr2.3:39765199-39765218 MS.gene68655:CDS 25.0%
! AAGAAAAAATCAAATTGCAG+TGG + chr2.3:39765762-39765781 MS.gene68655:intron 25.0%
! ACTACACAAATAAACATGAA+AGG - chr2.3:39766062-39766081 None:intergenic 25.0%
! ATGTTTATTTGTGTAGTTGT+TGG + chr2.3:39766065-39766084 MS.gene68655:intron 25.0%
! ATTTATTCACGTGTATAGTA+TGG - chr2.3:39766114-39766133 None:intergenic 25.0%
! CAATTCATATTTACATACCT+CGG - chr2.3:39765630-39765649 None:intergenic 25.0%
! CTACACAAATAAACATGAAA+GGG - chr2.3:39766061-39766080 None:intergenic 25.0%
! GAAAAAAATGTTGCAATTGT+TGG + chr2.3:39765197-39765216 MS.gene68655:CDS 25.0%
! GAAATTCTTAGTATCTTCTA+CGG - chr2.3:39765603-39765622 None:intergenic 25.0%
! TTGGAATTGAATCTTATGTA+TGG - chr2.3:39765473-39765492 None:intergenic 25.0%
!! AATCAATTTTTCACCTCTAT+AGG + chr2.3:39766583-39766602 MS.gene68655:intron 25.0%
!! ACTTTACCTTTAAAGATTTC+TGG - chr2.3:39766338-39766357 None:intergenic 25.0%
!! CATTGATATTGATTATGTTG+GGG + chr2.3:39765496-39765515 MS.gene68655:CDS 25.0%
!! CTTTACCTTTAAAGATTTCT+GGG - chr2.3:39766337-39766356 None:intergenic 25.0%
!! GTCATTGATATTGATTATGT+TGG + chr2.3:39765494-39765513 MS.gene68655:CDS 25.0%
AAAAAATCAAATTGCAGTGG+TGG + chr2.3:39765765-39765784 MS.gene68655:intron 30.0%
AAATGAAGTCATGGGAATTA+TGG + chr2.3:39765531-39765550 MS.gene68655:CDS 30.0%
AACAAGAGAGTTACAATAGT+AGG + chr2.3:39766416-39766435 MS.gene68655:CDS 30.0%
AAGTTTGTCATTCTTTGCAT+TGG + chr2.3:39766263-39766282 MS.gene68655:CDS 30.0%
AATTTGTAGAGCATATTTGC+AGG - chr2.3:39765246-39765265 None:intergenic 30.0%
AGGTAAAGTTATGCATTCTT+TGG + chr2.3:39766349-39766368 MS.gene68655:CDS 30.0%
CTCTATACACTGTACAATTA+TGG - chr2.3:39766508-39766527 None:intergenic 30.0%
GAATCTTATGTATGGAATGA+TGG - chr2.3:39765465-39765484 None:intergenic 30.0%
TCATGAAGAAATGAAGTCAT+GGG + chr2.3:39765523-39765542 MS.gene68655:CDS 30.0%
TGCAAATATGCTCTACAAAT+TGG + chr2.3:39765245-39765264 MS.gene68655:CDS 30.0%
! CTTATATTTCAACCGTTTTG+CGG + chr2.3:39766690-39766709 MS.gene68655:CDS 30.0%
! GAAGGTTTAAAACCCTAATT+TGG + chr2.3:39766001-39766020 MS.gene68655:intron 30.0%
! TCTTTTATAGAAGAATCCCA+TGG - chr2.3:39765383-39765402 None:intergenic 30.0%
! TTGTTTGTTAGTTTGGAGTT+TGG - chr2.3:39765339-39765358 None:intergenic 30.0%
! TTTGTAAATTCAGGTTCACA+AGG + chr2.3:39766238-39766257 MS.gene68655:intron 30.0%
!! AAATGTTTCTCTAGCTTTGT+TGG - chr2.3:39765910-39765929 None:intergenic 30.0%
AAACCCTAATTTGGATTGCT+TGG + chr2.3:39766010-39766029 MS.gene68655:intron 35.0%
AAAGGCCCAGAAATCTTTAA+AGG + chr2.3:39766329-39766348 MS.gene68655:CDS 35.0%
CACAAATAAACATGAAAGGG+AGG - chr2.3:39766058-39766077 None:intergenic 35.0%
CTCATGAAGAAATGAAGTCA+TGG + chr2.3:39765522-39765541 MS.gene68655:CDS 35.0%
GATGGAAAAATGTTGAGCAT+AGG - chr2.3:39765447-39765466 None:intergenic 35.0%
GCTAGAGAAACATTTGTAGT+TGG + chr2.3:39765915-39765934 MS.gene68655:intron 35.0%
GTATAGTATGGTGTTCGATA+AGG - chr2.3:39766102-39766121 None:intergenic 35.0%
GTTCTTTGGATAATTGTGCA+AGG - chr2.3:39766619-39766638 None:intergenic 35.0%
TCTTAAACCTCCAAACATGT+TGG - chr2.3:39765820-39765839 None:intergenic 35.0%
TGGTGTTCGATAAGGTAAAA+TGG - chr2.3:39766094-39766113 None:intergenic 35.0%
TTATCCAAAGAACTACACAC+TGG + chr2.3:39766626-39766645 MS.gene68655:CDS 35.0%
TTCATATTTACATACCTCGG+TGG - chr2.3:39765627-39765646 None:intergenic 35.0%
! CCAGTTTACAGATTTTCCAT+GGG + chr2.3:39765364-39765383 MS.gene68655:CDS 35.0%
! CTTTGCATTGGAAAGTATAG+TGG + chr2.3:39766275-39766294 MS.gene68655:CDS 35.0%
! TCCAGTTTACAGATTTTCCA+TGG + chr2.3:39765363-39765382 MS.gene68655:CDS 35.0%
! TCTTGCACTTGTTGATTACT+TGG - chr2.3:39765413-39765432 None:intergenic 35.0%
!! AGCTTTGTTGGTTAGAAAGA+AGG - chr2.3:39765898-39765917 None:intergenic 35.0%
!! GGAAGTCTTGTTTGTTAGTT+TGG - chr2.3:39765346-39765365 None:intergenic 35.0%
!! TCTTCCAGATTTTGACATTG+CGG + chr2.3:39766651-39766670 MS.gene68655:CDS 35.0%
AAGTCATGGGAATTATGGAG+TGG + chr2.3:39765536-39765555 MS.gene68655:CDS 40.0%
AATATTCCTAAGTTCCCCCT+TGG + chr2.3:39766305-39766324 MS.gene68655:CDS 40.0%
AGAGTTACAATAGTAGGCTC+AGG + chr2.3:39766422-39766441 MS.gene68655:CDS 40.0%
AGGGGGAACTTAGGAATATT+TGG - chr2.3:39766305-39766324 None:intergenic 40.0%
ATTGTCTACGAATCTGACGA+TGG + chr2.3:39765278-39765297 MS.gene68655:CDS 40.0%
CAAGTTCCCTTAGAACCAAA+TGG - chr2.3:39765572-39765591 None:intergenic 40.0%
CAGTGGTGGTTAGAACTATT+CGG + chr2.3:39765779-39765798 MS.gene68655:intron 40.0%
CCCATGGAAAATCTGTAAAC+TGG - chr2.3:39765367-39765386 None:intergenic 40.0%
GAAACCAGTGTGTAGTTCTT+TGG - chr2.3:39766633-39766652 None:intergenic 40.0%
GAGTTACAATAGTAGGCTCA+GGG + chr2.3:39766423-39766442 MS.gene68655:CDS 40.0%
GCTGAATGTGCAAATGCAAA+TGG + chr2.3:39766467-39766486 MS.gene68655:CDS 40.0%
GTACTAAAAGCTCCGCAAAA+CGG - chr2.3:39766705-39766724 None:intergenic 40.0%
TACTAAGAATTTCACCACCG+AGG + chr2.3:39765610-39765629 MS.gene68655:CDS 40.0%
TAGAACTATTCGGACTCACA+TGG + chr2.3:39765789-39765808 MS.gene68655:intron 40.0%
TCGTCAGATTCGTAGACAAT+TGG - chr2.3:39765278-39765297 None:intergenic 40.0%
TGGGAATTATGGAGTGGTAA+TGG + chr2.3:39765542-39765561 MS.gene68655:CDS 40.0%
!! AGTGGTAATGGAAGTCCATT+TGG + chr2.3:39765554-39765573 MS.gene68655:CDS 40.0%
!! CATTTGGTTCTAAGGGAACT+TGG + chr2.3:39765570-39765589 MS.gene68655:CDS 40.0%
!! CTTCCAGATTTTGACATTGC+GGG + chr2.3:39766652-39766671 MS.gene68655:CDS 40.0%
!! GGAAGTCCATTTGGTTCTAA+GGG + chr2.3:39765563-39765582 MS.gene68655:CDS 40.0%
!! TGGAAGTCCATTTGGTTCTA+AGG + chr2.3:39765562-39765581 MS.gene68655:CDS 40.0%
AACCTCCAAACATGTTGGAC+CGG - chr2.3:39765815-39765834 None:intergenic 45.0%
AATGTTGCAATTGTTGGGGC+AGG + chr2.3:39765203-39765222 MS.gene68655:CDS 45.0%
AGGATGAGTGACTCCTATAG+AGG - chr2.3:39766599-39766618 None:intergenic 45.0%
ATGAAAGGGAGGTCGTGTTA+TGG - chr2.3:39766047-39766066 None:intergenic 45.0%
ATGCCCGCAATGTCAAAATC+TGG - chr2.3:39766658-39766677 None:intergenic 45.0%
ATTGTTGGGGCAGGAATAAG+TGG + chr2.3:39765212-39765231 MS.gene68655:CDS 45.0%
CTAAGTAGGAATGGTTCTCC+AGG - chr2.3:39766733-39766752 None:intergenic 45.0%
GACATTGCGGGCATTAATCT+TGG + chr2.3:39766664-39766683 MS.gene68655:CDS 45.0%
GGGCCAAGCAATCCAAATTA+GGG - chr2.3:39766016-39766035 None:intergenic 45.0%
GTGAAAGTAAAGTGGCCACA+AGG - chr2.3:39766756-39766775 None:intergenic 45.0%
TACGAATCTGACGATGGCAT+TGG + chr2.3:39765284-39765303 MS.gene68655:CDS 45.0%
TGAAAGGGAGGTCGTGTTAT+GGG - chr2.3:39766046-39766065 None:intergenic 45.0%
! GAGCTTTTAGTACACAAGCC+TGG + chr2.3:39766712-39766731 MS.gene68655:CDS 45.0%
!! ACCATTCCTACTTAGCCTTG+TGG + chr2.3:39766738-39766757 MS.gene68655:CDS 45.0%
!! ACGATGGCATTGGTGGAATA+TGG + chr2.3:39765294-39765313 MS.gene68655:CDS 45.0%
!! AGATTTCTGGGCCTTTTCCA+AGG - chr2.3:39766325-39766344 None:intergenic 45.0%
!! AGCTGCAGTCTTGTTGTCTA+AGG - chr2.3:39766384-39766403 None:intergenic 45.0%
!! ATTTCTGGGCCTTTTCCAAG+GGG - chr2.3:39766323-39766342 None:intergenic 45.0%
!! GATTTCTGGGCCTTTTCCAA+GGG - chr2.3:39766324-39766343 None:intergenic 45.0%
!!! TTTTTTTCATTTATTTTATA+AGG - chr2.3:39765860-39765879 None:intergenic 5.0%
AAGTGGCCACAAGGCTAAGT+AGG - chr2.3:39766747-39766766 None:intergenic 50.0%
ACTATTCGGACTCACATGGC+CGG + chr2.3:39765793-39765812 MS.gene68655:intron 50.0%
AGGTCGTGTTATGGGTTCGT+TGG - chr2.3:39766038-39766057 None:intergenic 50.0%
CCTAAGTTCCCCCTTGGAAA+AGG + chr2.3:39766311-39766330 MS.gene68655:CDS 50.0%
GCCACAAGGCTAAGTAGGAA+TGG - chr2.3:39766742-39766761 None:intergenic 50.0%
GGGGCCAAGCAATCCAAATT+AGG - chr2.3:39766017-39766036 None:intergenic 50.0%
GGTCGTGTTATGGGTTCGTT+GGG - chr2.3:39766037-39766056 None:intergenic 50.0%
GTCGTGTTATGGGTTCGTTG+GGG - chr2.3:39766036-39766055 None:intergenic 50.0%
! CCTTTTCCAAGGGGGAACTT+AGG - chr2.3:39766314-39766333 None:intergenic 50.0%
! GAATCTGACGATGGCATTGG+TGG + chr2.3:39765287-39765306 MS.gene68655:CDS 50.0%
! TTTCTGGGCCTTTTCCAAGG+GGG - chr2.3:39766322-39766341 None:intergenic 50.0%
CATGGCCGGTCCAACATGTT+TGG + chr2.3:39765807-39765826 MS.gene68655:intron 55.0%
GGCCGGTCCAACATGTTTGG+AGG + chr2.3:39765810-39765829 MS.gene68655:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 39765194 39766780 39765194 ID=MS.gene68655
chr2.3 mRNA 39765194 39766780 39765194 ID=MS.gene68655.t1;Parent=MS.gene68655
chr2.3 exon 39765194 39765631 39765194 ID=MS.gene68655.t1.exon1;Parent=MS.gene68655.t1
chr2.3 CDS 39765194 39765631 39765194 ID=cds.MS.gene68655.t1;Parent=MS.gene68655.t1
chr2.3 exon 39766251 39766488 39766251 ID=MS.gene68655.t1.exon2;Parent=MS.gene68655.t1
chr2.3 CDS 39766251 39766488 39766251 ID=cds.MS.gene68655.t1;Parent=MS.gene68655.t1
chr2.3 exon 39766605 39766780 39766605 ID=MS.gene68655.t1.exon3;Parent=MS.gene68655.t1
chr2.3 CDS 39766605 39766780 39766605 ID=cds.MS.gene68655.t1;Parent=MS.gene68655.t1
Gene Sequence

>MS.gene68655

ATGGAAAAAAATGTTGCAATTGTTGGGGCAGGAATAAGTGGTATACTTGCCTGCAAATATGCTCTACAAATTGGTTTTCATCCAATTGTCTACGAATCTGACGATGGCATTGGTGGAATATGGAGACATACTATTCAGTCTACCAAACTCCAAACTAACAAACAAGACTTCCAGTTTACAGATTTTCCATGGGATTCTTCTATAAAAGAAGATTTTCCAAGTAATCAACAAGTGCAAGATTATCTTAACTCCTATGCTCAACATTTTTCCATCATTCCATACATAAGATTCAATTCCAAAGTCATTGATATTGATTATGTTGGGGAGTCTCATGAAGAAATGAAGTCATGGGAATTATGGAGTGGTAATGGAAGTCCATTTGGTTCTAAGGGAACTTGGCATCTAACCGTAGAAGATACTAAGAATTTCACCACCGAGGTATGTAAATATGAATTGTAATTTTGTGTGTAACTTCTTTTTCTTTTTCATTTTGGTTTATTTCATATTTTTTTCTTGTTTGGGCAAAATCTTTATGCTTACAATTTCTATTTTCACTGTCTCAATAAAAAAGAAAAAATCAAATTGCAGTGGTGGTTAGAACTATTCGGACTCACATGGCCGGTCCAACATGTTTGGAGGTTTAAGACAAATTTTATAATGGGACCTTATAAAATAAATGAAAAAAATCAATTTACATGCGACCTTCTTTCTAACCAACAAAGCTAGAGAAACATTTGTAGTTGGATTATCATATTACATATTTATAACTAAATTGAAATTTTTTGACACTTTTTTTATTCAAAATTTGAAGGTTTAAAACCCTAATTTGGATTGCTTGGCCCCAACGAACCCATAACACGACCTCCCTTTCATGTTTATTTGTGTAGTTGTTGGACGCCATTTTACCTTATCGAACACCATACTATACACGTGAATAAATTTTGTAGTTTGAAAATGATATAAATATTTAATTAGCTTAAGGAAAAAGTTCCCATAAAAAAAAAAAAAAAGGAAAAGCAACAATACATTAAACTAGTTTGAATATTTGTAAATTCAGGTTCACAAGGCTAAGTTTGTCATTCTTTGCATTGGAAAGTATAGTGGCTTTCCAAATATTCCTAAGTTCCCCCTTGGAAAAGGCCCAGAAATCTTTAAAGGTAAAGTTATGCATTCTTTGGATTATTCTGCCTTAGACAACAAGACTGCAGCTGAAATGATAAAAAACAAGAGAGTTACAATAGTAGGCTCAGGGAAATCTGCTTTTGATATTGCTGCTGAATGTGCAAATGCAAATGGTAAGAATATATTTGTCCATAATTGTACAGTGTATAGAGAATTCGTTATTTATAGTTTTCAATTTTAAATAACTACTTCAATTTATTTTTTTAAAATCAATTTTTCACCTCTATAGGAGTCACTCATCCTTGCACAATTATCCAAAGAACTACACACTGGTTTCTTCCAGATTTTGACATTGCGGGCATTAATCTTGGATACTTATATTTCAACCGTTTTGCGGAGCTTTTAGTACACAAGCCTGGAGAACCATTCCTACTTAGCCTTGTGGCCACTTTACTTTCACCATTG
Protein sequence

>MS.gene68655.t1

MEKNVAIVGAGISGILACKYALQIGFHPIVYESDDGIGGIWRHTIQSTKLQTNKQDFQFTDFPWDSSIKEDFPSNQQVQDYLNSYAQHFSIIPYIRFNSKVIDIDYVGESHEEMKSWELWSGNGSPFGSKGTWHLTVEDTKNFTTEVHKAKFVILCIGKYSGFPNIPKFPLGKGPEIFKGKVMHSLDYSALDNKTAAEMIKNKRVTIVGSGKSAFDIAAECANANGVTHPCTIIQRTTHWFLPDFDIAGINLGYLYFNRFAELLVHKPGEPFLLSLVATLLSPL