AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68922

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68922.t1 MTR_6g032965 96.947 393 12 0 1 393 1 393 0.0 796
MS.gene68922.t1 MTR_1g076430 64.156 385 138 0 1 385 123 507 0.0 531
MS.gene68922.t1 MTR_1g041085 64.973 374 131 0 12 385 140 513 0.0 524
MS.gene68922.t1 MTR_2g054940 61.818 385 147 0 1 385 122 506 0.0 513
MS.gene68922.t1 MTR_4g054415 58.915 387 158 1 1 386 41 427 4.22e-170 482
MS.gene68922.t1 MTR_4g054630 58.915 387 158 1 1 386 82 468 8.93e-170 483
MS.gene68922.t1 MTR_7g081695 59.843 381 141 1 1 381 122 490 2.88e-165 482
MS.gene68922.t1 MTR_6g074880 57.702 383 161 1 1 382 84 466 4.87e-165 471
MS.gene68922.t1 MTR_7g118170 57.841 389 158 3 2 387 146 531 7.75e-164 470
MS.gene68922.t1 MTR_4g113280 57.812 384 151 1 2 385 112 484 1.88e-163 468
MS.gene68922.t1 MTR_4g070270 56.919 383 164 1 2 384 121 502 8.06e-160 459
MS.gene68922.t1 MTR_1g110930 53.619 373 172 1 13 385 120 491 7.42e-150 433
MS.gene68922.t1 MTR_3g105550 51.145 393 182 2 2 384 144 536 1.59e-147 429
MS.gene68922.t1 MTR_5g056510 52.815 373 175 1 13 385 120 491 2.94e-146 424
MS.gene68922.t1 MTR_2g007020 52.186 366 173 2 22 386 89 453 4.01e-136 397
MS.gene68922.t1 MTR_7g118160 48.843 389 155 4 2 388 77 423 1.12e-129 379
MS.gene68922.t1 MTR_2g436480 47.792 385 198 2 2 384 68 451 2.98e-127 374
MS.gene68922.t1 MTR_2g013740 47.606 376 191 3 2 376 133 503 6.17e-121 360
MS.gene68922.t1 MTR_1g102290 40.576 382 226 1 2 382 103 484 1.13e-96 297
MS.gene68922.t1 MTR_4g054260 56.299 254 93 2 130 382 87 323 2.77e-95 288
MS.gene68922.t1 MTR_4g062190 39.706 408 220 6 2 392 55 453 9.05e-95 291
MS.gene68922.t1 MTR_4g062270 39.141 396 230 5 2 392 55 444 1.72e-92 285
MS.gene68922.t1 MTR_2g096210 40.409 391 202 7 12 381 64 444 1.49e-91 284
MS.gene68922.t1 MTR_1g115560 37.845 399 220 6 5 381 59 451 4.83e-91 282
MS.gene68922.t1 MTR_4g062170 38.670 406 226 6 2 392 55 452 5.19e-89 277
MS.gene68922.t1 MTR_6g051440 42.246 374 209 3 12 382 113 482 5.30e-88 275
MS.gene68922.t1 MTR_3g072940 40.909 374 214 3 12 382 114 483 5.33e-88 275
MS.gene68922.t1 MTR_3g072980 40.909 374 214 3 12 382 114 483 5.51e-88 275
MS.gene68922.t1 MTR_4g053905 60.870 161 63 0 226 386 1 161 3.75e-69 215
MS.gene68922.t1 MTR_4g054265 48.052 77 40 0 1 77 41 117 5.05e-16 74.3
MS.gene68922.t1 MTR_4g078730 23.462 260 162 8 97 351 152 379 4.90e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68922.t1 AT1G04220 61.125 391 145 3 2 385 126 516 0.0 514
MS.gene68922.t1 AT2G26640 61.299 385 149 0 1 385 120 504 3.13e-179 508
MS.gene68922.t1 AT5G43760 62.308 390 141 3 2 385 132 521 1.19e-176 503
MS.gene68922.t1 AT2G16280 58.225 383 159 1 2 384 129 510 2.51e-165 473
MS.gene68922.t1 AT1G01120 56.952 374 160 1 10 382 151 524 9.56e-165 472
MS.gene68922.t1 AT1G19440 56.658 383 165 1 2 384 133 514 3.38e-162 466
MS.gene68922.t1 AT4G34510 57.979 376 156 2 12 386 113 487 3.03e-161 462
MS.gene68922.t1 AT2G46720 53.003 383 178 1 2 382 81 463 2.66e-153 441
MS.gene68922.t1 AT1G25450 54.960 373 167 1 13 385 116 487 5.60e-150 434
MS.gene68922.t1 AT4G34520 56.334 371 160 2 15 384 121 490 2.03e-149 432
MS.gene68922.t1 AT4G34250 56.557 366 158 1 22 387 126 490 4.51e-148 429
MS.gene68922.t1 AT1G68530 54.795 365 162 2 22 385 130 492 5.73e-148 429
MS.gene68922.t1 AT2G15090 54.026 385 171 3 5 384 96 479 2.87e-147 426
MS.gene68922.t1 AT3G10280 51.697 383 176 2 2 382 81 456 1.43e-145 421
MS.gene68922.t1 AT2G26250 47.922 409 187 2 2 384 142 550 4.19e-140 410
MS.gene68922.t1 AT1G71160 49.062 373 188 2 10 382 76 446 1.52e-128 378
MS.gene68922.t1 AT5G49070 47.606 376 194 2 12 385 82 456 5.07e-121 358
MS.gene68922.t1 AT3G52160 45.604 364 167 2 10 373 4 336 8.04e-111 328
MS.gene68922.t1 AT3G52160 44.892 372 174 2 2 373 109 449 5.83e-109 327
MS.gene68922.t1 AT2G28630 39.163 406 229 6 2 392 55 457 7.82e-97 297
MS.gene68922.t1 AT2G28630 39.163 406 229 6 2 392 55 457 7.82e-97 297
MS.gene68922.t1 AT5G04530 41.860 387 212 6 2 381 57 437 2.47e-96 295
MS.gene68922.t1 AT1G07720 39.695 393 218 6 5 381 58 447 2.41e-93 288
MS.gene68922.t1 AT1G07720 39.695 393 218 6 5 381 101 490 3.96e-93 289
MS.gene68922.t1 AT1G68530 53.636 220 102 0 22 241 130 349 1.76e-80 252
MS.gene68922.t1 AT5G49070 44.397 232 129 0 12 243 82 313 3.54e-61 200
MS.gene68922.t1 AT4G34850 25.229 218 131 6 115 329 91 279 3.90e-12 67.0
MS.gene68922.t1 AT4G34850 25.229 218 131 6 115 329 164 352 7.26e-12 67.0

Find 59 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATATGGCAAATGGCTTT+TGG 0.246325 6.2:+21299061 MS.gene68922:CDS
TTGGATAGAGCAAAACATTT+TGG 0.264127 6.2:+21295750 MS.gene68922:CDS
GTTAATCATTATAAACTTAG+AGG 0.281581 6.2:+21296035 MS.gene68922:CDS
AGCACTAAAGCATATGAGTT+TGG 0.291741 6.2:-21298443 None:intergenic
TCCATTAGTCCTCCCAATTT+CGG 0.294314 6.2:+21298763 MS.gene68922:CDS
GGAATTTCTAATAATGCTTC+AGG 0.313917 6.2:-21295849 None:intergenic
TCCGAAATTGGGAGGACTAA+TGG 0.324601 6.2:-21298764 None:intergenic
AAAGTTGAAGCTAAAGATAT+TGG 0.336152 6.2:+21295954 MS.gene68922:CDS
TTGTTCATTGGCAATGGAAC+AGG 0.342492 6.2:-21299181 None:intergenic
AACTTAAAATTCGGCATGTA+TGG 0.357301 6.2:-21298845 None:intergenic
TTAATCATATGTTTGTTCAT+TGG 0.363214 6.2:-21299193 None:intergenic
TTGCACAAAAGAAATGTTGT+TGG 0.390520 6.2:+21295731 None:intergenic
GATCTATAATCTTAGTGGTA+TGG 0.390916 6.2:+21296067 MS.gene68922:CDS
GCACTAAAGCATATGAGTTT+GGG 0.397910 6.2:-21298442 None:intergenic
TACTAATTGTCTCTTTCGAA+TGG 0.399551 6.2:+21298523 MS.gene68922:CDS
AATATCTTTAGCTTCAACTT+TGG 0.416100 6.2:-21295952 None:intergenic
TCGAACGCTAACTTAAAATT+CGG 0.417831 6.2:-21298854 None:intergenic
TTAAGGTTAATACTGCTGTT+TGG 0.420779 6.2:+21299092 MS.gene68922:CDS
CTATATAGTGTCATTCTTGA+AGG 0.424575 6.2:-21298959 None:intergenic
ATCTATAATCTTAGTGGTAT+GGG 0.428495 6.2:+21296068 MS.gene68922:CDS
ACTAATTGTCTCTTTCGAAT+GGG 0.459375 6.2:+21298524 MS.gene68922:CDS
TCATCAAGTGTTAGTCTTGG+TGG 0.459635 6.2:-21295870 None:intergenic
AAATACCTCAAGAAGACGTT+TGG 0.460466 6.2:-21296123 None:intergenic
AGGACATAAAATATGGCAAA+TGG 0.463975 6.2:+21299054 MS.gene68922:CDS
ACACATCATCAAGTTCTGTT+TGG 0.465892 6.2:+21298990 MS.gene68922:CDS
CGATGGATGACTTGAGAGTA+GGG 0.466110 6.2:-21298558 None:intergenic
AGAATGACACTATATAGATA+TGG 0.470646 6.2:+21298965 MS.gene68922:CDS
AGTGGTATGGGATGCAGTGC+TGG 0.470681 6.2:+21296080 MS.gene68922:CDS
ATATGTTTGTTCATTGGCAA+TGG 0.471516 6.2:-21299187 None:intergenic
GCTTCATCAAGTGTTAGTCT+TGG 0.477201 6.2:-21295873 None:intergenic
TTCGAAAGAGACAATTAGTA+AGG 0.478311 6.2:-21298520 None:intergenic
ATTGTCTTATTGTGAAGCTA+AGG 0.483820 6.2:+21299018 MS.gene68922:CDS
TTTGAGCGGCTACGGTCCGA+TGG 0.522197 6.2:-21298575 None:intergenic
TTGTCTTATTGTGAAGCTAA+GGG 0.526933 6.2:+21299019 MS.gene68922:CDS
CCGATGGATGACTTGAGAGT+AGG 0.528757 6.2:-21298559 None:intergenic
CAATTAGTAAGGATCATTGA+AGG 0.529851 6.2:-21298509 None:intergenic
AGGATCTCATGAATGTTGCT+AGG 0.531519 6.2:+21298708 MS.gene68922:CDS
GCGGTAGAGCGGTTCTTGAT+CGG 0.540567 6.2:+21298897 MS.gene68922:CDS
AATTGTCTCTTTCGAATGGG+TGG 0.541404 6.2:+21298527 MS.gene68922:CDS
TGCTTCAGGAACATAAGTGA+TGG 0.543655 6.2:-21295835 None:intergenic
TAAAGATATTGGAATTCTTG+TGG 0.557701 6.2:+21295965 MS.gene68922:CDS
GACTAACACTTGATGAAGCA+AGG 0.570909 6.2:+21295877 MS.gene68922:CDS
GGATCTCATGAATGTTGCTA+GGG 0.577726 6.2:+21298709 MS.gene68922:CDS
TCTCTTTCGAATGGGTGGAT+CGG 0.581140 6.2:+21298532 MS.gene68922:CDS
AATTAGTAAGGATCATTGAA+GGG 0.585870 6.2:-21298508 None:intergenic
CAGTGCTGGTGTTATTGCAG+TGG 0.587920 6.2:+21296094 MS.gene68922:CDS
TGTTCATTGGCAATGGAACA+GGG 0.590457 6.2:-21299180 None:intergenic
CTTTGCCAAACGTCTTCTTG+AGG 0.595847 6.2:+21296118 MS.gene68922:CDS
CATGCATACGGGCGGTAGAG+CGG 0.599254 6.2:+21298886 MS.gene68922:CDS
GCTTCAGGAACATAAGTGAT+GGG 0.600651 6.2:-21295834 None:intergenic
ACAATAGTATCTGAAAGTGA+TGG 0.605880 6.2:-21296014 None:intergenic
GTATCTGAAAGTGATGGTGT+AGG 0.606742 6.2:-21296008 None:intergenic
ACTCGGTGTTAAACTATCGA+AGG 0.617292 6.2:+21298688 MS.gene68922:CDS
TGTCTTATTGTGAAGCTAAG+GGG 0.629341 6.2:+21299020 MS.gene68922:CDS
CGTACACACATAACATCGCT+CGG 0.629342 6.2:+21298740 MS.gene68922:CDS
GCAATTGTAACTGTTGTCAT+CGG 0.639808 6.2:-21298636 None:intergenic
CCTACTCTCAAGTCATCCAT+CGG 0.642889 6.2:+21298559 MS.gene68922:CDS
CAAATCTCAAGCATATACAA+AGG 0.644919 6.2:+21298479 MS.gene68922:CDS
CATTCGTTGCGCACTCACGT+AGG 0.677333 6.2:+21298611 MS.gene68922:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - chr6.2:21297258-21297239 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr6.2:21297259-21297240 None:intergenic 0.0%
!!! ATATTTTTATTTTATTTTAA+AGG + chr6.2:21296528-21296547 MS.gene68922:intron 0.0%
!!! TATATATATATATATTTTTT+CGG - chr6.2:21297234-21297253 None:intergenic 0.0%
!! ATATATATATATACATATAG+GGG + chr6.2:21297307-21297326 MS.gene68922:intron 10.0%
!! TAAAAAAATTATAAAAGAGT+GGG + chr6.2:21296676-21296695 MS.gene68922:intron 10.0%
!! TTAAAAAAATTATAAAAGAG+TGG + chr6.2:21296675-21296694 MS.gene68922:intron 10.0%
!!! TATTTTATTTTAAAGGTTAT+TGG + chr6.2:21296535-21296554 MS.gene68922:intron 10.0%
!!! TATTTTTCTTTTTCTTTTTT+TGG - chr6.2:21297057-21297076 None:intergenic 10.0%
!!! TATTTTTGTTTTTTTTTTGT+TGG - chr6.2:21298065-21298084 None:intergenic 10.0%
!!! TTAGTTGTTTTTTTTTTTTT+TGG + chr6.2:21296764-21296783 MS.gene68922:intron 10.0%
!! TTAAAAAAGGACATAAAATA+TGG + chr6.2:21299047-21299066 MS.gene68922:CDS 15.0%
!! TTATATGAGAAAACAATATA+TGG - chr6.2:21297898-21297917 None:intergenic 15.0%
!!! AAAAATAAAAAAAGTGTAGT+TGG + chr6.2:21296924-21296943 MS.gene68922:intron 15.0%
!!! AAAGAGTACAAAATTATTTA+AGG + chr6.2:21296224-21296243 MS.gene68922:intron 15.0%
!!! ATATTGTTTTCTCATATAAT+TGG + chr6.2:21297899-21297918 MS.gene68922:intron 15.0%
!!! GTTTGTTAAATTTATTTGTA+GGG - chr6.2:21298336-21298355 None:intergenic 15.0%
!!! TGAAGATATTTTATAATTGA+TGG + chr6.2:21298182-21298201 MS.gene68922:intron 15.0%
!!! TGTTTGTTAAATTTATTTGT+AGG - chr6.2:21298337-21298356 None:intergenic 15.0%
!!! TTTCATTTTTTTTAGTAAGT+AGG + chr6.2:21296378-21296397 MS.gene68922:intron 15.0%
!! AAAATAAAATATGCAAGATC+CGG + chr6.2:21297188-21297207 MS.gene68922:intron 20.0%
!! AACTATATGAAATTGATGAA+TGG - chr6.2:21296589-21296608 None:intergenic 20.0%
!! ACCTCTAGTATTAAAATATT+TGG - chr6.2:21296417-21296436 None:intergenic 20.0%
!! ATAATCAAGCTTAATTAGTT+AGG - chr6.2:21298398-21298417 None:intergenic 20.0%
!! CAGAATCTTTAATTCAATAA+TGG - chr6.2:21298007-21298026 None:intergenic 20.0%
!! CCTCTAGTATTAAAATATTT+GGG - chr6.2:21296416-21296435 None:intergenic 20.0%
!! CTAAAAAAAATGAAAATGTC+TGG - chr6.2:21296373-21296392 None:intergenic 20.0%
!! GAGATATCAATATGTATTTA+TGG + chr6.2:21296640-21296659 MS.gene68922:intron 20.0%
!! GTTAATCATTATAAACTTAG+AGG + chr6.2:21296035-21296054 MS.gene68922:CDS 20.0%
!! GTTATTTACATATAGCAAAA+GGG + chr6.2:21296786-21296805 MS.gene68922:intron 20.0%
!! TTAATCATATGTTTGTTCAT+TGG - chr6.2:21299196-21299215 None:intergenic 20.0%
!!! AAGAGTTTTGCTATTTATTA+TGG + chr6.2:21297721-21297740 MS.gene68922:intron 20.0%
!!! ACTATTTTATACTTGTTTGT+TGG + chr6.2:21296285-21296304 MS.gene68922:intron 20.0%
!!! ATTTTGATCTATAATCTTAG+TGG + chr6.2:21296062-21296081 MS.gene68922:CDS 20.0%
!!! GAATCAAATTTAGTTCTTTT+TGG + chr6.2:21295903-21295922 MS.gene68922:CDS 20.0%
!!! TATATATATTTTTTCGGTAG+TGG - chr6.2:21297228-21297247 None:intergenic 20.0%
!!! TGATTCATAAGATTTTAGAA+AGG + chr6.2:21295799-21295818 MS.gene68922:CDS 20.0%
! AAAAATGTTCTCTCATATAG+TGG - chr6.2:21297857-21297876 None:intergenic 25.0%
! AAAGTTGAAGCTAAAGATAT+TGG + chr6.2:21295954-21295973 MS.gene68922:CDS 25.0%
! AAATAAAATATGCAAGATCC+GGG + chr6.2:21297189-21297208 MS.gene68922:intron 25.0%
! AAGTAGTTAAATACACCTTA+AGG + chr6.2:21297536-21297555 MS.gene68922:intron 25.0%
! AAGTTGTTAAATACACCTTA+AGG + chr6.2:21297390-21297409 MS.gene68922:intron 25.0%
! AATTAGTAAGGATCATTGAA+GGG - chr6.2:21298511-21298530 None:intergenic 25.0%
! ACACCTTAATAAAAACTAGT+GGG - chr6.2:21297347-21297366 None:intergenic 25.0%
! AGAATGACACTATATAGATA+TGG + chr6.2:21298965-21298984 MS.gene68922:CDS 25.0%
! ATCTATAATCTTAGTGGTAT+GGG + chr6.2:21296068-21296087 MS.gene68922:CDS 25.0%
! ATGTGAAAAATTTAGTTGAG+AGG + chr6.2:21298798-21298817 MS.gene68922:CDS 25.0%
! CTAAATCATTGAAAAATGCT+TGG + chr6.2:21299137-21299156 MS.gene68922:CDS 25.0%
! GGTTATTTACATATAGCAAA+AGG + chr6.2:21296785-21296804 MS.gene68922:intron 25.0%
! TAAAGATATTGGAATTCTTG+TGG + chr6.2:21295965-21295984 MS.gene68922:CDS 25.0%
! TATTTATGACATGCAATTAC+AGG + chr6.2:21298415-21298434 MS.gene68922:intron 25.0%
!! AATATCTTTAGCTTCAACTT+TGG - chr6.2:21295955-21295974 None:intergenic 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG + chr6.2:21297429-21297448 MS.gene68922:intron 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG - chr6.2:21297448-21297429 None:intergenic 25.0%
!!! ATACTGGAAGATACTTTTTT+TGG - chr6.2:21297926-21297945 None:intergenic 25.0%
!!! CAAGCATTTTTCAATGATTT+AGG - chr6.2:21299139-21299158 None:intergenic 25.0%
!!! CCCAAATATTTTAATACTAG+AGG + chr6.2:21296413-21296432 MS.gene68922:intron 25.0%
AAAATATTTGGGTCTCTCAA+TGG - chr6.2:21296405-21296424 None:intergenic 30.0%
AACTTAAAATTCGGCATGTA+TGG - chr6.2:21298848-21298867 None:intergenic 30.0%
AATAAAATATGCAAGATCCG+GGG + chr6.2:21297190-21297209 MS.gene68922:intron 30.0%
ACAATAGTATCTGAAAGTGA+TGG - chr6.2:21296017-21296036 None:intergenic 30.0%
ACTAATTGTCTCTTTCGAAT+GGG + chr6.2:21298524-21298543 MS.gene68922:CDS 30.0%
AGGACATAAAATATGGCAAA+TGG + chr6.2:21299054-21299073 MS.gene68922:CDS 30.0%
ATATGTTTGTTCATTGGCAA+TGG - chr6.2:21299190-21299209 None:intergenic 30.0%
ATCATTGAAAAATGCTTGGA+TGG + chr6.2:21299141-21299160 MS.gene68922:CDS 30.0%
CAAATCTCAAGCATATACAA+AGG + chr6.2:21298479-21298498 MS.gene68922:CDS 30.0%
CAATTAGTAAGGATCATTGA+AGG - chr6.2:21298512-21298531 None:intergenic 30.0%
CACACCTTAATAAAAACTAG+TGG - chr6.2:21297348-21297367 None:intergenic 30.0%
GAAGACGAAAAAGAAATACT+CGG + chr6.2:21298671-21298690 MS.gene68922:CDS 30.0%
GATCTATAATCTTAGTGGTA+TGG + chr6.2:21296067-21296086 MS.gene68922:CDS 30.0%
GGAATTTCTAATAATGCTTC+AGG - chr6.2:21295852-21295871 None:intergenic 30.0%
GTGTGAATTTGTATCATTTG+CGG - chr6.2:21297787-21297806 None:intergenic 30.0%
TACTAATTGTCTCTTTCGAA+TGG + chr6.2:21298523-21298542 MS.gene68922:CDS 30.0%
TCGAACGCTAACTTAAAATT+CGG - chr6.2:21298857-21298876 None:intergenic 30.0%
TTAAGGTTAATACTGCTGTT+TGG + chr6.2:21299092-21299111 MS.gene68922:CDS 30.0%
TTCGAAAGAGACAATTAGTA+AGG - chr6.2:21298523-21298542 None:intergenic 30.0%
! AAAATATGGCAAATGGCTTT+TGG + chr6.2:21299061-21299080 MS.gene68922:CDS 30.0%
! ACTTGAGTTTTTCCGAAATT+GGG - chr6.2:21298778-21298797 None:intergenic 30.0%
! ATTGTCTTATTGTGAAGCTA+AGG + chr6.2:21299018-21299037 MS.gene68922:CDS 30.0%
! CACACCTTCTAAAAAATAAG+TGG + chr6.2:21297428-21297447 MS.gene68922:intron 30.0%
! CACACCTTCTAAAAAATAAG+TGG - chr6.2:21297447-21297428 None:intergenic 30.0%
! CTATATAGTGTCATTCTTGA+AGG - chr6.2:21298962-21298981 None:intergenic 30.0%
! TACTTGAGTTTTTCCGAAAT+TGG - chr6.2:21298779-21298798 None:intergenic 30.0%
! TGATATTGCTTCTTGTTTGT+CGG + chr6.2:21296261-21296280 MS.gene68922:intron 30.0%
! TTGGATAGAGCAAAACATTT+TGG + chr6.2:21295750-21295769 MS.gene68922:CDS 30.0%
! TTGTCTTATTGTGAAGCTAA+GGG + chr6.2:21299019-21299038 MS.gene68922:CDS 30.0%
! TTTTAGCAACATTCACCTTA+AGG - chr6.2:21297408-21297427 None:intergenic 30.0%
!! CATAAGATTTTAGAAAGGTC+AGG + chr6.2:21295804-21295823 MS.gene68922:CDS 30.0%
!! TGAGCTTGATGATTTTCATA+TGG + chr6.2:21298934-21298953 MS.gene68922:CDS 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG + chr6.2:21297341-21297360 MS.gene68922:intron 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG + chr6.2:21297488-21297507 MS.gene68922:intron 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG - chr6.2:21297507-21297488 None:intergenic 30.0%
AAATACCTCAAGAAGACGTT+TGG - chr6.2:21296126-21296145 None:intergenic 35.0%
ACACATCATCAAGTTCTGTT+TGG + chr6.2:21298990-21299009 MS.gene68922:CDS 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr6.2:21297575-21297594 MS.gene68922:intron 35.0%
AGCACTAAAGCATATGAGTT+TGG - chr6.2:21298446-21298465 None:intergenic 35.0%
CAAATTACATGTAGCTAGCA+AGG - chr6.2:21298373-21298392 None:intergenic 35.0%
GCAATTGTAACTGTTGTCAT+CGG - chr6.2:21298639-21298658 None:intergenic 35.0%
GCACTAAAGCATATGAGTTT+GGG - chr6.2:21298445-21298464 None:intergenic 35.0%
GTTTCACTGTCAATCATCAT+AGG + chr6.2:21297980-21297999 MS.gene68922:intron 35.0%
TAGTGGTGAAATAGATACAG+TGG - chr6.2:21297840-21297859 None:intergenic 35.0%
TGTATGTTAGCAACTCCTAT+AGG + chr6.2:21297452-21297471 MS.gene68922:intron 35.0%
TGTGCTAAGCTCACTTATTA+AGG - chr6.2:21298310-21298329 None:intergenic 35.0%
! CGATCAATTTTGCATGCATA+CGG + chr6.2:21298874-21298893 MS.gene68922:CDS 35.0%
! GATCAATTTTGCATGCATAC+GGG + chr6.2:21298875-21298894 MS.gene68922:CDS 35.0%
! TATACATATAGGGGTTTGCT+AGG + chr6.2:21297316-21297335 MS.gene68922:intron 35.0%
! TGTCTTATTGTGAAGCTAAG+GGG + chr6.2:21299020-21299039 MS.gene68922:CDS 35.0%
! TTTTAGCAAGCTACACCTTA+AGG - chr6.2:21297554-21297573 None:intergenic 35.0%
!! ATTTTAGAAAGGTCAGGTGT+GGG + chr6.2:21295810-21295829 MS.gene68922:CDS 35.0%
!! GCATCAACTGATATTTTGAG+CGG - chr6.2:21298592-21298611 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr6.2:21297581-21297600 None:intergenic 35.0%
!!! TATATTTTTTCGGTAGTGGC+CGG - chr6.2:21297224-21297243 None:intergenic 35.0%
AACTCCTATAGGCATTTGCT+AGG + chr6.2:21297463-21297482 MS.gene68922:intron 40.0%
AATTGTCTCTTTCGAATGGG+TGG + chr6.2:21298527-21298546 MS.gene68922:CDS 40.0%
ACCTTAGTCCTACTCTGATA+CGG - chr6.2:21296735-21296754 None:intergenic 40.0%
AGAGTAGGACTAAGGTAGTT+CGG + chr6.2:21296739-21296758 MS.gene68922:intron 40.0%
AGGATCTCATGAATGTTGCT+AGG + chr6.2:21298708-21298727 MS.gene68922:CDS 40.0%
CACTCCCACATAAAAACTAG+TGG + chr6.2:21297574-21297593 MS.gene68922:intron 40.0%
CTGTGACTGAACACATATAC+TGG - chr6.2:21297942-21297961 None:intergenic 40.0%
GACTAACACTTGATGAAGCA+AGG + chr6.2:21295877-21295896 MS.gene68922:CDS 40.0%
GCTAAGGGGAGAGTTAAAAA+AGG + chr6.2:21299034-21299053 MS.gene68922:CDS 40.0%
GCTTCAGGAACATAAGTGAT+GGG - chr6.2:21295837-21295856 None:intergenic 40.0%
GGATCTCATGAATGTTGCTA+GGG + chr6.2:21298709-21298728 MS.gene68922:CDS 40.0%
GTATCCTAGCAAATGCCTAT+AGG - chr6.2:21297470-21297489 None:intergenic 40.0%
TCCATTAGTCCTCCCAATTT+CGG + chr6.2:21298763-21298782 MS.gene68922:CDS 40.0%
TGCTTCAGGAACATAAGTGA+TGG - chr6.2:21295838-21295857 None:intergenic 40.0%
TGTTCATTGGCAATGGAACA+GGG - chr6.2:21299183-21299202 None:intergenic 40.0%
TTGTTCATTGGCAATGGAAC+AGG - chr6.2:21299184-21299203 None:intergenic 40.0%
! GCTTCATCAAGTGTTAGTCT+TGG - chr6.2:21295876-21295895 None:intergenic 40.0%
! GGCTTTTGGATCTGGATTTA+AGG + chr6.2:21299075-21299094 MS.gene68922:CDS 40.0%
! GTATCTGAAAGTGATGGTGT+AGG - chr6.2:21296011-21296030 None:intergenic 40.0%
! TGAGTTTTTCCGAAATTGGG+AGG - chr6.2:21298775-21298794 None:intergenic 40.0%
!! ACTCGGTGTTAAACTATCGA+AGG + chr6.2:21298688-21298707 MS.gene68922:CDS 40.0%
!! ACTGATATTTTGAGCGGCTA+CGG - chr6.2:21298586-21298605 None:intergenic 40.0%
!! GATTTTAGAAAGGTCAGGTG+TGG + chr6.2:21295809-21295828 MS.gene68922:CDS 40.0%
!! TCATCAAGTGTTAGTCTTGG+TGG - chr6.2:21295873-21295892 None:intergenic 40.0%
!!! ATATTTTTTCGGTAGTGGCC+GGG - chr6.2:21297223-21297242 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr6.2:21297582-21297601 None:intergenic 40.0%
CCTACTCTCAAGTCATCCAT+CGG + chr6.2:21298559-21298578 MS.gene68922:CDS 45.0%
CCTTAGTCCTACTCTGATAC+GGG - chr6.2:21296734-21296753 None:intergenic 45.0%
CGATGGATGACTTGAGAGTA+GGG - chr6.2:21298561-21298580 None:intergenic 45.0%
CGTACACACATAACATCGCT+CGG + chr6.2:21298740-21298759 MS.gene68922:CDS 45.0%
CTTTGCCAAACGTCTTCTTG+AGG + chr6.2:21296118-21296137 MS.gene68922:CDS 45.0%
TCCGAAATTGGGAGGACTAA+TGG - chr6.2:21298767-21298786 None:intergenic 45.0%
TCTCTTTCGAATGGGTGGAT+CGG + chr6.2:21298532-21298551 MS.gene68922:CDS 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG + chr6.2:21297156-21297175 MS.gene68922:intron 45.0%
! CAATTTTGCATGCATACGGG+CGG + chr6.2:21298878-21298897 MS.gene68922:CDS 45.0%
! TGGCAAATGGCTTTTGGATC+TGG + chr6.2:21299067-21299086 MS.gene68922:CDS 45.0%
!!! TATTTTTTCGGTAGTGGCCG+GGG - chr6.2:21297222-21297241 None:intergenic 45.0%
!! ATATATATATATATACATAT+AGG + chr6.2:21297305-21297324 MS.gene68922:intron 5.0%
!! TATATATATATATACATATA+GGG + chr6.2:21297306-21297325 MS.gene68922:intron 5.0%
ACCCTCAAGCTCCAACCTAT+AGG + chr6.2:21296708-21296727 MS.gene68922:intron 50.0%
CCCGTATCAGAGTAGGACTA+AGG + chr6.2:21296731-21296750 MS.gene68922:intron 50.0%
CCGATGGATGACTTGAGAGT+AGG - chr6.2:21298562-21298581 None:intergenic 50.0%
CTACTCTGATACGGGCCTAT+AGG - chr6.2:21296726-21296745 None:intergenic 50.0%
CTATAGGCCCGTATCAGAGT+AGG + chr6.2:21296724-21296743 MS.gene68922:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG + chr6.2:21297155-21297174 MS.gene68922:intron 50.0%
TCTGATACGGGCCTATAGGT+TGG - chr6.2:21296722-21296741 None:intergenic 50.0%
! GCCTATAGGTTGGAGCTTGA+GGG - chr6.2:21296712-21296731 None:intergenic 50.0%
!! CAGTGCTGGTGTTATTGCAG+TGG + chr6.2:21296094-21296113 MS.gene68922:CDS 50.0%
AAGATCCGGGGTTCAAACCC+CGG + chr6.2:21297202-21297221 MS.gene68922:intron 55.0%
AGTGGTATGGGATGCAGTGC+TGG + chr6.2:21296080-21296099 MS.gene68922:CDS 55.0%
CATTCGTTGCGCACTCACGT+AGG + chr6.2:21298611-21298630 MS.gene68922:CDS 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr6.2:21297154-21297173 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr6.2:21297151-21297170 MS.gene68922:intron 55.0%
GCGGTAGAGCGGTTCTTGAT+CGG + chr6.2:21298897-21298916 MS.gene68922:CDS 55.0%
! GGCCTATAGGTTGGAGCTTG+AGG - chr6.2:21296713-21296732 None:intergenic 55.0%
CATGCATACGGGCGGTAGAG+CGG + chr6.2:21298886-21298905 MS.gene68922:CDS 60.0%
TTTGAGCGGCTACGGTCCGA+TGG - chr6.2:21298578-21298597 None:intergenic 60.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr6.2:21297210-21297229 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 21295744 21299222 21295744 ID=MS.gene68922
chr6.2 mRNA 21295744 21299222 21295744 ID=MS.gene68922.t1;Parent=MS.gene68922
chr6.2 exon 21295744 21296139 21295744 ID=MS.gene68922.t1.exon1;Parent=MS.gene68922.t1
chr6.2 CDS 21295744 21296139 21295744 ID=cds.MS.gene68922.t1;Parent=MS.gene68922.t1
chr6.2 exon 21298437 21299222 21298437 ID=MS.gene68922.t1.exon2;Parent=MS.gene68922.t1
chr6.2 CDS 21298437 21299222 21298437 ID=cds.MS.gene68922.t1;Parent=MS.gene68922.t1
Gene Sequence

>MS.gene68922

ATGTTGTTGGATAGAGCAAAACATTTTGGTTTTCTTAATGAAGAAAGTTTCATTTTGATTCATAAGATTTTAGAAAGGTCAGGTGTGGGACCCATCACTTATGTTCCTGAAGCATTATTAGAAATTCCACCAAGACTAACACTTGATGAAGCAAGGAATGAATCAAATTTAGTTCTTTTTGGAGCTGTTGATGAACTTCTTGAGAAAACCAAAGTTGAAGCTAAAGATATTGGAATTCTTGTGGTGAACTGTTGTTTATTTAATCCTACACCATCACTTTCAGATACTATTGTTAATCATTATAAACTTAGAGGAAATATTTTGATCTATAATCTTAGTGGTATGGGATGCAGTGCTGGTGTTATTGCAGTGGACTTTGCCAAACGTCTTCTTGAGGTATTTTTGTCTCTCTTTATTTTCTATACATATCTTAATTTATTTATAGAACTTTATAGTAAAATAATTAATTATTTGTCAAAAAAAGAGTACAAAATTATTTAAGGAAACTTTATTTTTGTGATATTGCTTCTTGTTTGTCGGTACTATTTTATACTTGTTTGTTGGTACAATTATATATTGACAAGAATACATGTTTTTTTTTTTTTTTTGAAAGAAGATGTTAAAGACCAGACATTTTCATTTTTTTTAGTAAGTAGGACCATTGAGAGACCCAAATATTTTAATACTAGAGGTAGCATATATATATATATATAATTTTATTTTTAAAAGAATGTATATACATTATAATTGTTCTATATAGTTTTTCATATTTTTAAAATATTAAATATTTTTATTTTATTTTAAAGGTTATTGGAAATATATTTATACAAATAATTATTTAACCATTCATCAATTTCATATAGTTTTGCATCTAATTCTTTATAATATTAATAGCAGAGATATCAATATGTATTTATGGTTCAAAATATTATTAAAAAAATTATAAAAGAGTGGGAGCTAAAGCACCCTCAAGCTCCAACCTATAGGCCCGTATCAGAGTAGGACTAAGGTAGTTCGGTTTTAGTTGTTTTTTTTTTTTTTGGTTATTTACATATAGCAAAAGGGTAGCTTTAAATATTTATTGTCTCATTCTAACTATTTTTCTCTATAACAAAAAAATACAGATAATTTTAACATAATAATAGTTATTAGTTAATGCTCTCTGCAGTCTCAAATTTATAAAAATAAAAAAAGTGTAGTTGGTCTAAATTTAGATCAATAACATTAGCTGTATTAATTTGAAGAAAAATAAAAAAATTTGCATATATTACTATATTTTAGTGACTAAATAGAAAAATAGTGATACTGTACCAAAAAAAGAAAAAGAAAAATAGTGATACTTGAGTGAATAAATTAAATATTTACTCAAATCATTAGCTATTAATACATAACATATACTTAGTTTGTCCTCGTGAGCTTAGCTCAGTTGGTTGGGACAATGCATAAAATAAAATATGCAAGATCCGGGGTTCAAACCCCGGCCACTACCGAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATAGGGGTTTGCTAGGATACACCCACTAGTTTTTATTAAGGTGTGTTTTAGCAAAGATATAACTAAAAAGTTGTTAAATACACCTTAAGGTGAATGTTGCTAAAACACACCTTCTAAAAAATAAGTGGGTGTATGTTAGCAACTCCTATAGGCATTTGCTAGGATACACCCACTTATTTTTTAGAAGGTGTGTTTTAGCAAGTTATAACTAAAAAGTAGTTAAATACACCTTAAGGTGTAGCTTGCTAAAACACTCCCACATAAAAACTAGTGGGTGTGTTCTAGCAAATCCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACTTTTAAATTTATTGAAGAAGAGTTTTGCTATTTATTATGGTTCTACTCAACTTAAAAGATTAGTCTTTATATATAGTTAACCGCAAATGATACAAATTCACACGCAAAAAATAAAACACATACATATGTTTCACCACTGTATCTATTTCACCACTATATGAGAGAACATTTTTTACTGCAAACAAGTAACTCCATATATTGTTTTCTCATATAATTGGTCCAAAAAAAGTATCTTCCAGTATATGTGTTCAGTCACAGCGTCGATATGTTCATACAGTTTCACTGTCAATCATCATAGGTCCATTATTGAATTAAAGATTCTGACACTTTCATAATAACAATAATAATGATACTTTTGCCAACAAAAAAAAAACAAAAATAATGATGCACATTGTTTTGAAGTAACTTTAATACTTTTTTTCTTTAATACTTAATTTTATACTAGTACAATACAAGATATTTTATAATTTTTTTTGAATGAAGATATTTTATAATTGATGGTCGTTACTTGTCATACTGAAGTAGAACATGATTGTTAATGCTTACAAAGTTAATACACACATATACAAATAAAACTTATCAATTATTTTCTATTTTTTGAATCCTTAATAAGTGAGCTTAGCACATAACCCTACAAATAAATTTAACAAACATGATCTTCAATTTCCTTGCTAGCTACATGTAATTTGTTCCTAACTAATTAAGCTTGATTATTTATGACATGCAATTACAGGCACACCCAAACTCATATGCTTTAGTGCTAAGTACAGAAAATCAAATCTCAAGCATATACAAAGGCAATAACCCTTCAATGATCCTTACTAATTGTCTCTTTCGAATGGGTGGATCGGCAGCCCTACTCTCAAGTCATCCATCGGACCGTAGCCGCTCAAAATATCAGTTGATGCATTCGTTGCGCACTCACGTAGGCGCCGATGACAACAGTTACAATTGCGTCTTTCAAGAAGAAGACGAAAAAGAAATACTCGGTGTTAAACTATCGAAGGATCTCATGAATGTTGCTAGGGATGCACTTCGTACACACATAACATCGCTCGGTCCATTAGTCCTCCCAATTTCGGAAAAACTCAAGTATGTGAAAAATTTAGTTGAGAGGAAGATTTTGAAGAAGAAGATCGAACCATACATGCCGAATTTTAAGTTAGCGTTCGATCAATTTTGCATGCATACGGGCGGTAGAGCGGTTCTTGATCGGATGCAAAAGAGTCTTGAGCTTGATGATTTTCATATGGAGCCTTCAAGAATGACACTATATAGATATGGTAACACATCATCAAGTTCTGTTTGGTATGAATTGTCTTATTGTGAAGCTAAGGGGAGAGTTAAAAAAGGACATAAAATATGGCAAATGGCTTTTGGATCTGGATTTAAGGTTAATACTGCTGTTTGGTATGCTTTGAAGAATGTTGATCCTAAATCATTGAAAAATGCTTGGATGGATGAGATTGATGATTTCCCTGTTCCATTGCCAATGAACAAACATATGATTAAAGCTTAG
Protein sequence

>MS.gene68922.t1

MLLDRAKHFGFLNEESFILIHKILERSGVGPITYVPEALLEIPPRLTLDEARNESNLVLFGAVDELLEKTKVEAKDIGILVVNCCLFNPTPSLSDTIVNHYKLRGNILIYNLSGMGCSAGVIAVDFAKRLLEAHPNSYALVLSTENQISSIYKGNNPSMILTNCLFRMGGSAALLSSHPSDRSRSKYQLMHSLRTHVGADDNSYNCVFQEEDEKEILGVKLSKDLMNVARDALRTHITSLGPLVLPISEKLKYVKNLVERKILKKKIEPYMPNFKLAFDQFCMHTGGRAVLDRMQKSLELDDFHMEPSRMTLYRYGNTSSSSVWYELSYCEAKGRVKKGHKIWQMAFGSGFKVNTAVWYALKNVDPKSLKNAWMDEIDDFPVPLPMNKHMIKA