Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69119.t1 | XP_013462091.1 | 96.1 | 356 | 12 | 1 | 1 | 356 | 1 | 354 | 3.80E-184 | 654.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69119.t1 | A0A072V374 | 96.1 | 356 | 12 | 1 | 1 | 356 | 1 | 354 | 2.8e-184 | 654.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene69119 | 0.849171 | 3.84E-60 | -1.69E-46 |
| MS.gene050099 | MS.gene69119 | 0.811252 | 7.68E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene69119 | 0.809496 | 1.84E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene69119 | 0.8386 | 2.61E-57 | -1.69E-46 |
| MS.gene052600 | MS.gene69119 | 0.833906 | 4.08E-56 | -1.69E-46 |
| MS.gene054701 | MS.gene69119 | 0.819934 | 8.95E-53 | -1.69E-46 |
| MS.gene054942 | MS.gene69119 | 0.862372 | 5.31E-64 | -1.69E-46 |
| MS.gene057121 | MS.gene69119 | 0.818762 | 1.65E-52 | -1.69E-46 |
| MS.gene057439 | MS.gene69119 | 0.808007 | 3.83E-50 | -1.69E-46 |
| MS.gene058757 | MS.gene69119 | 0.822406 | 2.41E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69119.t1 | MTR_3g111540 | 96.067 | 356 | 12 | 1 | 1 | 356 | 1 | 354 | 0.0 | 689 |
| MS.gene69119.t1 | MTR_3g077500 | 29.907 | 321 | 206 | 6 | 42 | 349 | 56 | 370 | 5.87e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69119.t1 | AT1G48460 | 60.584 | 274 | 104 | 1 | 83 | 356 | 71 | 340 | 9.25e-120 | 350 |
| MS.gene69119.t1 | AT1G48460 | 53.650 | 274 | 86 | 2 | 83 | 356 | 71 | 303 | 2.26e-98 | 294 |
| MS.gene69119.t1 | AT5G63040 | 29.762 | 336 | 222 | 5 | 13 | 346 | 35 | 358 | 6.87e-35 | 131 |
| MS.gene69119.t1 | AT5G63040 | 29.762 | 336 | 222 | 5 | 13 | 346 | 35 | 358 | 8.10e-35 | 131 |
Find 75 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGAGGCTATTCCCTTCT+AGG | 0.161760 | 3.4:+96409595 | MS.gene69119:CDS |
| AGATATCAGAAACAGAATTT+TGG | 0.173325 | 3.4:+96407045 | MS.gene69119:CDS |
| AGTTCTAGTGTTCCTGTTAA+TGG | 0.210562 | 3.4:+96407289 | MS.gene69119:CDS |
| GAGCTCTTACTTATGGGTTT+TGG | 0.226459 | 3.4:+96407429 | MS.gene69119:CDS |
| AGACAAACCTCAAATATAAT+AGG | 0.229602 | 3.4:-96409261 | None:intergenic |
| AGCAGCACAGCCAACTAAAA+AGG | 0.270995 | 3.4:-96409181 | None:intergenic |
| TTAGAGCTGTACTGTAAATA+TGG | 0.272745 | 3.4:-96409018 | None:intergenic |
| CATCAACTTCTCGGCAAAAT+TGG | 0.283065 | 3.4:-96409451 | None:intergenic |
| AAGAGGAGAGCTCTTACTTA+TGG | 0.285229 | 3.4:+96407422 | MS.gene69119:CDS |
| GTTCTAGTGTTCCTGTTAAT+GGG | 0.303684 | 3.4:+96407290 | MS.gene69119:CDS |
| GAACCATTTCATGGTAAATC+AGG | 0.312758 | 3.4:+96407328 | MS.gene69119:CDS |
| GAACGAAGTGGAGCTTTGTT+TGG | 0.345152 | 3.4:+96409513 | MS.gene69119:CDS |
| TGCATACAATACCCAGTAAC+TGG | 0.357271 | 3.4:-96409551 | None:intergenic |
| TTTATTACTGACACGATGTT+TGG | 0.357578 | 3.4:-96406906 | None:intergenic |
| CTTTCGCAGTCACAAGCAAT+TGG | 0.359681 | 3.4:+96407006 | MS.gene69119:intron |
| CCACTTCGTTCTAGTACTTC+AGG | 0.361982 | 3.4:-96409501 | None:intergenic |
| TCTAGTCCCTATTATATTTG+AGG | 0.362027 | 3.4:+96409254 | MS.gene69119:CDS |
| GCTTCTGATTCCAATGTAAA+TGG | 0.366214 | 3.4:+96407241 | MS.gene69119:CDS |
| ATTTGCATTTGAGAGACATT+TGG | 0.369154 | 3.4:+96409206 | MS.gene69119:CDS |
| TACTGGGTATTGTATGCATT+TGG | 0.376974 | 3.4:+96409556 | MS.gene69119:CDS |
| AACGGGTTGGAACCATTTCA+TGG | 0.395145 | 3.4:+96407319 | MS.gene69119:CDS |
| TGGAGCTTTGTTTGGAATGA+TGG | 0.401307 | 3.4:+96409521 | MS.gene69119:CDS |
| GAACCTGATTTACCATGAAA+TGG | 0.410530 | 3.4:-96407331 | None:intergenic |
| ACCTCTGCTTTCCTCACAAC+GGG | 0.412478 | 3.4:+96409078 | MS.gene69119:CDS |
| AGAGGAGAGCTCTTACTTAT+GGG | 0.413551 | 3.4:+96407423 | MS.gene69119:CDS |
| AAAGATGATATGAATGCAAC+AGG | 0.422615 | 3.4:-96407454 | None:intergenic |
| GACAAACCTCAAATATAATA+GGG | 0.437022 | 3.4:-96409260 | None:intergenic |
| GAGAAGTGAAGTGGTTGAGA+GGG | 0.440340 | 3.4:-96406884 | None:intergenic |
| TACAGTACAGCTCTAAAAGA+TGG | 0.450227 | 3.4:+96409025 | MS.gene69119:CDS |
| CATAGAGTACATCAACTTCT+CGG | 0.455751 | 3.4:-96409460 | None:intergenic |
| AAAAGATGGGGTCTCATCAC+TGG | 0.458268 | 3.4:+96409039 | MS.gene69119:CDS |
| ACTTCCCTTCTTCTACAGAT+TGG | 0.459140 | 3.4:-96407378 | None:intergenic |
| TTTGATTTCAGCATTCAAAC+AGG | 0.466305 | 3.4:+96407156 | MS.gene69119:intron |
| GAAGTTGATGTACTCTATGA+AGG | 0.469649 | 3.4:+96409464 | MS.gene69119:CDS |
| CAGAGGTTATATATCCTTTG+AGG | 0.492149 | 3.4:-96409062 | None:intergenic |
| TTCCAATGCACCATTTACAT+TGG | 0.492222 | 3.4:-96407251 | None:intergenic |
| GGAGAAGTGAAGTGGTTGAG+AGG | 0.505328 | 3.4:-96406885 | None:intergenic |
| CATTGATGACGTTTCTCTTG+AGG | 0.505870 | 3.4:+96409580 | MS.gene69119:CDS |
| ACAGTACAGCTCTAAAAGAT+GGG | 0.516922 | 3.4:+96409026 | MS.gene69119:CDS |
| GTCGGTGGTTCGCATGGCAG+CGG | 0.518805 | 3.4:+96409143 | MS.gene69119:CDS |
| ACAGACGTGGGTCATCGTGC+TGG | 0.519318 | 3.4:+96409229 | MS.gene69119:CDS |
| ATTCTGCCACAGTTCTTCGT+TGG | 0.519550 | 3.4:+96407478 | MS.gene69119:CDS |
| ATCTGTAGAAGAAGGGAAGT+TGG | 0.519792 | 3.4:+96407381 | MS.gene69119:CDS |
| CTTCGTTGGCACTGTTGTTG+CGG | 0.536995 | 3.4:+96407492 | MS.gene69119:CDS |
| TTCTAGTGTTCCTGTTAATG+GGG | 0.540217 | 3.4:+96407291 | MS.gene69119:CDS |
| ACACACCAATCTGTAGAAGA+AGG | 0.540836 | 3.4:+96407373 | MS.gene69119:CDS |
| GGTCTCATCACTGGCCTCAA+AGG | 0.549169 | 3.4:+96409048 | MS.gene69119:CDS |
| TTCCAATGTAAATGGTGCAT+TGG | 0.552698 | 3.4:+96407249 | MS.gene69119:CDS |
| GAGCTCTCCTCTTGTTTGAA+CGG | 0.557951 | 3.4:-96407412 | None:intergenic |
| GTCACATACAAAAGAAGAAG+AGG | 0.559688 | 3.4:-96409117 | None:intergenic |
| GACCTGGTCGGTGGTTCGCA+TGG | 0.562381 | 3.4:+96409137 | MS.gene69119:CDS |
| TGCCATGCGAACCACCGACC+AGG | 0.563381 | 3.4:-96409139 | None:intergenic |
| TGTACTGTAAATATGGCCTC+TGG | 0.563744 | 3.4:-96409011 | None:intergenic |
| AAGTTGATGTACTCTATGAA+GGG | 0.577690 | 3.4:+96409465 | MS.gene69119:CDS |
| TCCGAGGCACTGTTCTATGT+CGG | 0.580851 | 3.4:+96408955 | MS.gene69119:CDS |
| ATCTGCTCCGTTCAAACAAG+AGG | 0.588809 | 3.4:+96407405 | MS.gene69119:CDS |
| GAGAGACATTTGGACAGACG+TGG | 0.588933 | 3.4:+96409216 | MS.gene69119:CDS |
| CACACCAATCTGTAGAAGAA+GGG | 0.595884 | 3.4:+96407374 | MS.gene69119:CDS |
| TTTCTGCTACTGGCCTAGAA+GGG | 0.597512 | 3.4:-96409608 | None:intergenic |
| TCAAATATAATAGGGACTAG+AGG | 0.608339 | 3.4:-96409252 | None:intergenic |
| TGTGACTTCATTCTCTTCCG+AGG | 0.611821 | 3.4:+96408939 | MS.gene69119:CDS |
| AACCTCTGCTTTCCTCACAA+CGG | 0.613720 | 3.4:+96409077 | MS.gene69119:CDS |
| TCTAGTGTTCCTGTTAATGG+GGG | 0.617974 | 3.4:+96407292 | MS.gene69119:CDS |
| AGTTGATGTACTCTATGAAG+GGG | 0.619565 | 3.4:+96409466 | MS.gene69119:CDS |
| TCCGACATAGAACAGTGCCT+CGG | 0.628444 | 3.4:-96408956 | None:intergenic |
| AGGTGGCTGATCGTGTCCAG+AGG | 0.630587 | 3.4:+96408995 | MS.gene69119:CDS |
| TCTAGTACTTCAGGTGACGC+AGG | 0.632274 | 3.4:-96409492 | None:intergenic |
| TTTGTATGTGACCTGGTCGG+TGG | 0.632802 | 3.4:+96409128 | MS.gene69119:CDS |
| CGATGTTTGGAGAAGTGAAG+TGG | 0.648063 | 3.4:-96406893 | None:intergenic |
| CCTGAAGTACTAGAACGAAG+TGG | 0.656210 | 3.4:+96409501 | MS.gene69119:CDS |
| CAGTACAGCTCTAAAAGATG+GGG | 0.663248 | 3.4:+96409027 | MS.gene69119:CDS |
| AGAGACATTTGGACAGACGT+GGG | 0.672518 | 3.4:+96409217 | MS.gene69119:CDS |
| ATACAAAAGAAGAAGAGGAA+CGG | 0.679901 | 3.4:-96409112 | None:intergenic |
| ACCCGTTGTGAGGAAAGCAG+AGG | 0.694025 | 3.4:-96409079 | None:intergenic |
| ACAGTGCCAACGAAGAACTG+TGG | 0.710210 | 3.4:-96407484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGATTTGATTTTAAA+AGG | + | chr3.4:96407520-96407539 | MS.gene69119:CDS | 10.0% |
| !!! | GAAATTATTTTGTTTACTTA+AGG | - | chr3.4:96408443-96408462 | None:intergenic | 15.0% |
| !! | ATTTATAACAATCTGTTGAA+TGG | - | chr3.4:96407129-96407148 | None:intergenic | 20.0% |
| !! | GTTAATACCAAATTAGTTAT+TGG | + | chr3.4:96408341-96408360 | MS.gene69119:intron | 20.0% |
| !! | TATAAAGCCAATAACTAATT+TGG | - | chr3.4:96408351-96408370 | None:intergenic | 20.0% |
| !!! | AAATGTACGATTTTTGTTTT+TGG | + | chr3.4:96407084-96407103 | MS.gene69119:intron | 20.0% |
| !!! | AATGTACGATTTTTGTTTTT+GGG | + | chr3.4:96407085-96407104 | MS.gene69119:intron | 20.0% |
| !!! | ATGATAATTGTTTTTGTTGT+AGG | + | chr3.4:96408195-96408214 | MS.gene69119:intron | 20.0% |
| !!! | ATTAAAGAACCTTCATTTTT+GGG | + | chr3.4:96407181-96407200 | MS.gene69119:CDS | 20.0% |
| !!! | CAGAATTTTATTTTACTTGT+CGG | - | chr3.4:96408157-96408176 | None:intergenic | 20.0% |
| ! | AAAAGAATGGAGTTACATAA+AGG | + | chr3.4:96408828-96408847 | MS.gene69119:intron | 25.0% |
| ! | AGAAGAAAAAAAAGTTAGTG+TGG | - | chr3.4:96406985-96407004 | None:intergenic | 25.0% |
| ! | AGACAAACCTCAAATATAAT+AGG | - | chr3.4:96409264-96409283 | None:intergenic | 25.0% |
| ! | ATCAGCAATATAAACACATT+AGG | - | chr3.4:96408264-96408283 | None:intergenic | 25.0% |
| ! | CCATTCATAATTACAAAACA+TGG | - | chr3.4:96407971-96407990 | None:intergenic | 25.0% |
| ! | CCATTCATAATTTCAAAACA+TGG | - | chr3.4:96408557-96408576 | None:intergenic | 25.0% |
| ! | GACAAACCTCAAATATAATA+GGG | - | chr3.4:96409263-96409282 | None:intergenic | 25.0% |
| ! | GTTAATGCCAAATTATTTAG+TGG | + | chr3.4:96407755-96407774 | MS.gene69119:intron | 25.0% |
| ! | TATATGGTAGTATGTTGTTA+AGG | + | chr3.4:96408305-96408324 | MS.gene69119:intron | 25.0% |
| ! | TGGGATTGAAAAAATTTCAA+AGG | + | chr3.4:96407200-96407219 | MS.gene69119:CDS | 25.0% |
| !! | AGATATCAGAAACAGAATTT+TGG | + | chr3.4:96407045-96407064 | MS.gene69119:CDS | 25.0% |
| !! | CCATGTTTTGTAATTATGAA+TGG | + | chr3.4:96407968-96407987 | MS.gene69119:intron | 25.0% |
| !! | GATATCAGAAACAGAATTTT+GGG | + | chr3.4:96407046-96407065 | MS.gene69119:CDS | 25.0% |
| !! | GATTAAAGAACCTTCATTTT+TGG | + | chr3.4:96407180-96407199 | MS.gene69119:CDS | 25.0% |
| !! | TATTTTACTTGTCGGAAATT+CGG | - | chr3.4:96408149-96408168 | None:intergenic | 25.0% |
| !! | TCACAATATCTGCATTTTAT+TGG | - | chr3.4:96408924-96408943 | None:intergenic | 25.0% |
| !! | TTTATGTAACTCCATTCTTT+TGG | - | chr3.4:96408829-96408848 | None:intergenic | 25.0% |
| !!! | ACTATTTGTTGTTATCTTTG+TGG | + | chr3.4:96408523-96408542 | MS.gene69119:intron | 25.0% |
| !!! | ATATTCTGGTTGTTATTTCA+CGG | - | chr3.4:96408229-96408248 | None:intergenic | 25.0% |
| !!! | CCATGTTTTGAAATTATGAA+TGG | + | chr3.4:96408554-96408573 | MS.gene69119:intron | 25.0% |
| !!! | TTTTTCAATCCCAAAAATGA+AGG | - | chr3.4:96407193-96407212 | None:intergenic | 25.0% |
| AAAGAAATGACTTTGTATGC+CGG | - | chr3.4:96407860-96407879 | None:intergenic | 30.0% | |
| AAAGATGATATGAATGCAAC+AGG | - | chr3.4:96407457-96407476 | None:intergenic | 30.0% | |
| AAGAGTTATACAACAAACAG+AGG | - | chr3.4:96408067-96408086 | None:intergenic | 30.0% | |
| AGAAATGCAGAGAAATTCAA+GGG | - | chr3.4:96408598-96408617 | None:intergenic | 30.0% | |
| AGTTCTTTGTCTACACTATA+TGG | + | chr3.4:96408289-96408308 | MS.gene69119:intron | 30.0% | |
| ATAACAACAAATAGTGTCAG+TGG | - | chr3.4:96408518-96408537 | None:intergenic | 30.0% | |
| ATACAAAAGAAGAAGAGGAA+CGG | - | chr3.4:96409115-96409134 | None:intergenic | 30.0% | |
| ATTTGCATTTGAGAGACATT+TGG | + | chr3.4:96409206-96409225 | MS.gene69119:CDS | 30.0% | |
| CATCAAGCCACTAAATAATT+TGG | - | chr3.4:96407765-96407784 | None:intergenic | 30.0% | |
| GAAATTCTGTTCCAAAAGAA+TGG | + | chr3.4:96408815-96408834 | MS.gene69119:intron | 30.0% | |
| TAGAAATGCAGAGAAATTCA+AGG | - | chr3.4:96408599-96408618 | None:intergenic | 30.0% | |
| TCAAATATAATAGGGACTAG+AGG | - | chr3.4:96409255-96409274 | None:intergenic | 30.0% | |
| TCAATTACCAATAGTCTTTG+AGG | - | chr3.4:96408396-96408415 | None:intergenic | 30.0% | |
| TCTAGTCCCTATTATATTTG+AGG | + | chr3.4:96409254-96409273 | MS.gene69119:CDS | 30.0% | |
| TGAAACGATCAATTATCAAC+AGG | - | chr3.4:96407818-96407837 | None:intergenic | 30.0% | |
| TGAGTTCTCACTAACATATA+TGG | + | chr3.4:96408677-96408696 | MS.gene69119:intron | 30.0% | |
| TTAGAGCTGTACTGTAAATA+TGG | - | chr3.4:96409021-96409040 | None:intergenic | 30.0% | |
| TTTATTACTGACACGATGTT+TGG | - | chr3.4:96406909-96406928 | None:intergenic | 30.0% | |
| ! | AATTTAAAGCACAGAACAGA+AGG | - | chr3.4:96407581-96407600 | None:intergenic | 30.0% |
| ! | ATTTTGCCAAAATCGCTAAA+AGG | - | chr3.4:96408732-96408751 | None:intergenic | 30.0% |
| ! | CAAAGACTATTGGTAATTGA+TGG | + | chr3.4:96408396-96408415 | MS.gene69119:intron | 30.0% |
| ! | TGTATACCTTTTAGCGATTT+TGG | + | chr3.4:96408723-96408742 | MS.gene69119:intron | 30.0% |
| ! | TTCTGTTCTGTGCTTTAAAT+TGG | + | chr3.4:96407580-96407599 | MS.gene69119:intron | 30.0% |
| ! | TTTGATTTCAGCATTCAAAC+AGG | + | chr3.4:96407156-96407175 | MS.gene69119:intron | 30.0% |
| ! | TTTGTTTGTGCTGTTAAATG+TGG | + | chr3.4:96408858-96408877 | MS.gene69119:intron | 30.0% |
| !! | AAGTTGATGTACTCTATGAA+GGG | + | chr3.4:96409465-96409484 | MS.gene69119:CDS | 30.0% |
| !! | CTGTTTGTTGTATAACTCTT+GGG | + | chr3.4:96408067-96408086 | MS.gene69119:intron | 30.0% |
| !! | TCTGTTTGTTGTATAACTCT+TGG | + | chr3.4:96408066-96408085 | MS.gene69119:intron | 30.0% |
| !! | TTAAGTTTTATCAAAGCCTC+CGG | + | chr3.4:96407838-96407857 | MS.gene69119:intron | 30.0% |
| AAGCTAACAACAACTAGTGT+TGG | - | chr3.4:96407935-96407954 | None:intergenic | 35.0% | |
| ACAAATCCGATAGAATAACG+TGG | - | chr3.4:96408764-96408783 | None:intergenic | 35.0% | |
| ATGGAGTTACATAAAGGTCA+TGG | + | chr3.4:96408834-96408853 | MS.gene69119:intron | 35.0% | |
| CAGAGGTTATATATCCTTTG+AGG | - | chr3.4:96409065-96409084 | None:intergenic | 35.0% | |
| CATAGAGTACATCAACTTCT+CGG | - | chr3.4:96409463-96409482 | None:intergenic | 35.0% | |
| GAAATGCAGAGAAATTCAAG+GGG | - | chr3.4:96408597-96408616 | None:intergenic | 35.0% | |
| GAACCATTTCATGGTAAATC+AGG | + | chr3.4:96407328-96407347 | MS.gene69119:CDS | 35.0% | |
| GAACCTGATTTACCATGAAA+TGG | - | chr3.4:96407334-96407353 | None:intergenic | 35.0% | |
| GCTTCTGATTCCAATGTAAA+TGG | + | chr3.4:96407241-96407260 | MS.gene69119:CDS | 35.0% | |
| GGAACAGCAATCATATATTC+TGG | - | chr3.4:96408243-96408262 | None:intergenic | 35.0% | |
| GTCACATACAAAAGAAGAAG+AGG | - | chr3.4:96409120-96409139 | None:intergenic | 35.0% | |
| GTGTTTCCACGTTATTCTAT+CGG | + | chr3.4:96408755-96408774 | MS.gene69119:intron | 35.0% | |
| GTTCTAGTGTTCCTGTTAAT+GGG | + | chr3.4:96407290-96407309 | MS.gene69119:CDS | 35.0% | |
| GTTCTCACTAACATATATGG+AGG | + | chr3.4:96408680-96408699 | MS.gene69119:intron | 35.0% | |
| TCAATTATCAACAGGCTTTG+AGG | - | chr3.4:96407810-96407829 | None:intergenic | 35.0% | |
| TCTCACTCAGATAACATACA+TGG | + | chr3.4:96408025-96408044 | MS.gene69119:intron | 35.0% | |
| TGAGAGGAATAACAACAACT+TGG | + | chr3.4:96409342-96409361 | MS.gene69119:intron | 35.0% | |
| TGTATAACTCTTGGGTATCT+TGG | + | chr3.4:96408075-96408094 | MS.gene69119:intron | 35.0% | |
| TTCCAATGCACCATTTACAT+TGG | - | chr3.4:96407254-96407273 | None:intergenic | 35.0% | |
| TTCCAATGTAAATGGTGCAT+TGG | + | chr3.4:96407249-96407268 | MS.gene69119:CDS | 35.0% | |
| TTCTAGTGTTCCTGTTAATG+GGG | + | chr3.4:96407291-96407310 | MS.gene69119:CDS | 35.0% | |
| ! | AGTTCTAGTGTTCCTGTTAA+TGG | + | chr3.4:96407289-96407308 | MS.gene69119:CDS | 35.0% |
| ! | AGTTGATGTACTCTATGAAG+GGG | + | chr3.4:96409466-96409485 | MS.gene69119:CDS | 35.0% |
| ! | ATGGTGATTTTCCAGTTACT+GGG | + | chr3.4:96409540-96409559 | MS.gene69119:CDS | 35.0% |
| ! | CAGGTTCTGTCTCTTTTTAT+GGG | + | chr3.4:96407347-96407366 | MS.gene69119:CDS | 35.0% |
| ! | GTTCTGTGCTTTAAATTGGA+TGG | + | chr3.4:96407584-96407603 | MS.gene69119:intron | 35.0% |
| ! | TACTGGGTATTGTATGCATT+TGG | + | chr3.4:96409556-96409575 | MS.gene69119:CDS | 35.0% |
| ! | TCAGGTTCTGTCTCTTTTTA+TGG | + | chr3.4:96407346-96407365 | MS.gene69119:CDS | 35.0% |
| ! | TTCTTCTTTTGTATGTGACC+TGG | + | chr3.4:96409121-96409140 | MS.gene69119:CDS | 35.0% |
| !! | ACAGTACAGCTCTAAAAGAT+GGG | + | chr3.4:96409026-96409045 | MS.gene69119:CDS | 35.0% |
| !! | ACTAGTTGTTGTTAGCTTTG+TGG | + | chr3.4:96407937-96407956 | MS.gene69119:intron | 35.0% |
| !! | GAAGTTGATGTACTCTATGA+AGG | + | chr3.4:96409464-96409483 | MS.gene69119:CDS | 35.0% |
| !! | TACAGTACAGCTCTAAAAGA+TGG | + | chr3.4:96409025-96409044 | MS.gene69119:CDS | 35.0% |
| !! | TGAAATTGAATTGACTTGCC+AGG | + | chr3.4:96409398-96409417 | MS.gene69119:intron | 35.0% |
| AAGAGGAGAGCTCTTACTTA+TGG | + | chr3.4:96407422-96407441 | MS.gene69119:CDS | 40.0% | |
| ACACACCAATCTGTAGAAGA+AGG | + | chr3.4:96407373-96407392 | MS.gene69119:CDS | 40.0% | |
| ACTTCCCTTCTTCTACAGAT+TGG | - | chr3.4:96407381-96407400 | None:intergenic | 40.0% | |
| AGAGGAGAGCTCTTACTTAT+GGG | + | chr3.4:96407423-96407442 | MS.gene69119:CDS | 40.0% | |
| ATCTGTAGAAGAAGGGAAGT+TGG | + | chr3.4:96407381-96407400 | MS.gene69119:CDS | 40.0% | |
| ATGCGAACCTCAAAGACTAT+TGG | + | chr3.4:96408386-96408405 | MS.gene69119:intron | 40.0% | |
| CACACCAATCTGTAGAAGAA+GGG | + | chr3.4:96407374-96407393 | MS.gene69119:CDS | 40.0% | |
| CATCAACTTCTCGGCAAAAT+TGG | - | chr3.4:96409454-96409473 | None:intergenic | 40.0% | |
| CCTGTTAATGGGGGTTATAA+CGG | + | chr3.4:96407301-96407320 | MS.gene69119:CDS | 40.0% | |
| CTGTTAATGGGGGTTATAAC+GGG | + | chr3.4:96407302-96407321 | MS.gene69119:CDS | 40.0% | |
| GCTGATACAATCTGTATACC+TGG | - | chr3.4:96409419-96409438 | None:intergenic | 40.0% | |
| GGCAAAACTTTGTGTTTCCA+TGG | + | chr3.4:96408096-96408115 | MS.gene69119:intron | 40.0% | |
| TCTAGTGTTCCTGTTAATGG+GGG | + | chr3.4:96407292-96407311 | MS.gene69119:CDS | 40.0% | |
| TGCATACAATACCCAGTAAC+TGG | - | chr3.4:96409554-96409573 | None:intergenic | 40.0% | |
| TGTACTGTAAATATGGCCTC+TGG | - | chr3.4:96409014-96409033 | None:intergenic | 40.0% | |
| TGTTTCCATGGTGTTCTGTT+GGG | + | chr3.4:96408108-96408127 | MS.gene69119:intron | 40.0% | |
| ! | ACTTGCAACATTTTTGCAGG+TGG | + | chr3.4:96408978-96408997 | MS.gene69119:CDS | 40.0% |
| ! | CAATTTTCAAACCCGTTGTG+AGG | - | chr3.4:96409092-96409111 | None:intergenic | 40.0% |
| ! | CGCTAAAAGGTATACAGCAA+AGG | - | chr3.4:96408719-96408738 | None:intergenic | 40.0% |
| ! | CTAACAACAACTAGTGTTGG+TGG | - | chr3.4:96407932-96407951 | None:intergenic | 40.0% |
| ! | GAGCTCTTACTTATGGGTTT+TGG | + | chr3.4:96407429-96407448 | MS.gene69119:CDS | 40.0% |
| ! | GATGGTGATTTTCCAGTTAC+TGG | + | chr3.4:96409539-96409558 | MS.gene69119:CDS | 40.0% |
| ! | TCTTTTGTATGTGACCTGGT+CGG | + | chr3.4:96409125-96409144 | MS.gene69119:CDS | 40.0% |
| !! | CAGTACAGCTCTAAAAGATG+GGG | + | chr3.4:96409027-96409046 | MS.gene69119:CDS | 40.0% |
| !! | CATTGATGACGTTTCTCTTG+AGG | + | chr3.4:96409580-96409599 | MS.gene69119:CDS | 40.0% |
| !! | CTGCATTTCTAGTGCTTCTT+GGG | + | chr3.4:96408608-96408627 | MS.gene69119:intron | 40.0% |
| !! | GCTATAGCTCCCTTTTTAGT+TGG | + | chr3.4:96409171-96409190 | MS.gene69119:CDS | 40.0% |
| !! | GTTTTAGATGTAGACTCTCG+TGG | + | chr3.4:96408631-96408650 | MS.gene69119:intron | 40.0% |
| !! | TCTGCATTTCTAGTGCTTCT+TGG | + | chr3.4:96408607-96408626 | MS.gene69119:intron | 40.0% |
| !! | TGCATTTCTAGTGCTTCTTG+GGG | + | chr3.4:96408609-96408628 | MS.gene69119:intron | 40.0% |
| !! | TGGAGCTTTGTTTGGAATGA+TGG | + | chr3.4:96409521-96409540 | MS.gene69119:CDS | 40.0% |
| AAAACCCCAACAGAACACCA+TGG | - | chr3.4:96408116-96408135 | None:intergenic | 45.0% | |
| AAAAGATGGGGTCTCATCAC+TGG | + | chr3.4:96409039-96409058 | MS.gene69119:CDS | 45.0% | |
| AACCTCTGCTTTCCTCACAA+CGG | + | chr3.4:96409077-96409096 | MS.gene69119:CDS | 45.0% | |
| AGAGACATTTGGACAGACGT+GGG | + | chr3.4:96409217-96409236 | MS.gene69119:CDS | 45.0% | |
| AGCAGCACAGCCAACTAAAA+AGG | - | chr3.4:96409184-96409203 | None:intergenic | 45.0% | |
| AGTGGTAAGTACAGAACCAG+AGG | - | chr3.4:96408500-96408519 | None:intergenic | 45.0% | |
| ATCTGCTCCGTTCAAACAAG+AGG | + | chr3.4:96407405-96407424 | MS.gene69119:CDS | 45.0% | |
| ATTCTGCCACAGTTCTTCGT+TGG | + | chr3.4:96407478-96407497 | MS.gene69119:CDS | 45.0% | |
| CCACTTCGTTCTAGTACTTC+AGG | - | chr3.4:96409504-96409523 | None:intergenic | 45.0% | |
| CCGTTATAACCCCCATTAAC+AGG | - | chr3.4:96407304-96407323 | None:intergenic | 45.0% | |
| CGATGTTTGGAGAAGTGAAG+TGG | - | chr3.4:96406896-96406915 | None:intergenic | 45.0% | |
| CTCTTTGTCTACACTTCGGT+AGG | + | chr3.4:96407700-96407719 | MS.gene69119:intron | 45.0% | |
| CTTTCGCAGTCACAAGCAAT+TGG | + | chr3.4:96407006-96407025 | MS.gene69119:intron | 45.0% | |
| GAAATGACTTTGTATGCCGG+AGG | - | chr3.4:96407857-96407876 | None:intergenic | 45.0% | |
| GAAGTGTAGACAAAGAGCAG+CGG | - | chr3.4:96407697-96407716 | None:intergenic | 45.0% | |
| GAGAAGTGAAGTGGTTGAGA+GGG | - | chr3.4:96406887-96406906 | None:intergenic | 45.0% | |
| GCAGCACAGCCAACTAAAAA+GGG | - | chr3.4:96409183-96409202 | None:intergenic | 45.0% | |
| GCTGCTCTTTGTCTACACTT+CGG | + | chr3.4:96407696-96407715 | MS.gene69119:intron | 45.0% | |
| GTGTTTCCATGGTGTTCTGT+TGG | + | chr3.4:96408107-96408126 | MS.gene69119:intron | 45.0% | |
| GTTTCCATGGTGTTCTGTTG+GGG | + | chr3.4:96408109-96408128 | MS.gene69119:intron | 45.0% | |
| TCTTGAGGCTATTCCCTTCT+AGG | + | chr3.4:96409595-96409614 | MS.gene69119:CDS | 45.0% | |
| TGTGACTTCATTCTCTTCCG+AGG | + | chr3.4:96408939-96408958 | MS.gene69119:CDS | 45.0% | |
| ! | CCTGAAGTACTAGAACGAAG+TGG | + | chr3.4:96409501-96409520 | MS.gene69119:CDS | 45.0% |
| ! | CGGACTTGCAACATTTTTGC+AGG | + | chr3.4:96408975-96408994 | MS.gene69119:CDS | 45.0% |
| ! | GAGCTCTCCTCTTGTTTGAA+CGG | - | chr3.4:96407415-96407434 | None:intergenic | 45.0% |
| ! | TTTCTGCTACTGGCCTAGAA+GGG | - | chr3.4:96409611-96409630 | None:intergenic | 45.0% |
| !! | AACGGGTTGGAACCATTTCA+TGG | + | chr3.4:96407319-96407338 | MS.gene69119:CDS | 45.0% |
| !! | GAACGAAGTGGAGCTTTGTT+TGG | + | chr3.4:96409513-96409532 | MS.gene69119:CDS | 45.0% |
| !! | TAATGGGGGTTATAACGGGT+TGG | + | chr3.4:96407306-96407325 | MS.gene69119:CDS | 45.0% |
| !! | TCAGTTCTGAAGCAAACCTC+TGG | + | chr3.4:96408481-96408500 | MS.gene69119:intron | 45.0% |
| !! | TTTTCTGCTACTGGCCTAGA+AGG | - | chr3.4:96409612-96409631 | None:intergenic | 45.0% |
| ACAGTGCCAACGAAGAACTG+TGG | - | chr3.4:96407487-96407506 | None:intergenic | 50.0% | |
| ACCTCTGCTTTCCTCACAAC+GGG | + | chr3.4:96409078-96409097 | MS.gene69119:CDS | 50.0% | |
| ACTTCGGTAGGACACTGTTG+AGG | + | chr3.4:96407712-96407731 | MS.gene69119:intron | 50.0% | |
| ATGCAGCTTGACGAGTCTAC+TGG | + | chr3.4:96409317-96409336 | MS.gene69119:intron | 50.0% | |
| CTTCGTTGGCACTGTTGTTG+CGG | + | chr3.4:96407492-96407511 | MS.gene69119:CDS | 50.0% | |
| GAGAGACATTTGGACAGACG+TGG | + | chr3.4:96409216-96409235 | MS.gene69119:CDS | 50.0% | |
| GGAGAAGTGAAGTGGTTGAG+AGG | - | chr3.4:96406888-96406907 | None:intergenic | 50.0% | |
| GGTGGTCAGTACAGAACTAG+AGG | - | chr3.4:96407914-96407933 | None:intergenic | 50.0% | |
| TCCGACATAGAACAGTGCCT+CGG | - | chr3.4:96408959-96408978 | None:intergenic | 50.0% | |
| TCTAGTACTTCAGGTGACGC+AGG | - | chr3.4:96409495-96409514 | None:intergenic | 50.0% | |
| TTTGTATGTGACCTGGTCGG+TGG | + | chr3.4:96409128-96409147 | MS.gene69119:CDS | 50.0% | |
| !! | TCCGAGGCACTGTTCTATGT+CGG | + | chr3.4:96408955-96408974 | MS.gene69119:CDS | 50.0% |
| ACCCGTTGTGAGGAAAGCAG+AGG | - | chr3.4:96409082-96409101 | None:intergenic | 55.0% | |
| ! | GACGAGTCTACTGGTCTGAG+AGG | + | chr3.4:96409326-96409345 | MS.gene69119:intron | 55.0% |
| ! | GGTCTCATCACTGGCCTCAA+AGG | + | chr3.4:96409048-96409067 | MS.gene69119:CDS | 55.0% |
| ACAGACGTGGGTCATCGTGC+TGG | + | chr3.4:96409229-96409248 | MS.gene69119:CDS | 60.0% | |
| AGGTGGCTGATCGTGTCCAG+AGG | + | chr3.4:96408995-96409014 | MS.gene69119:CDS | 60.0% | |
| GACCTGGTCGGTGGTTCGCA+TGG | + | chr3.4:96409137-96409156 | MS.gene69119:CDS | 65.0% | |
| GTCGGTGGTTCGCATGGCAG+CGG | + | chr3.4:96409143-96409162 | MS.gene69119:CDS | 65.0% | |
| TGCCATGCGAACCACCGACC+AGG | - | chr3.4:96409142-96409161 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 96406854 | 96409638 | 96406854 | ID=MS.gene69119 |
| chr3.4 | mRNA | 96406854 | 96409638 | 96406854 | ID=MS.gene69119.t1;Parent=MS.gene69119 |
| chr3.4 | exon | 96406854 | 96406916 | 96406854 | ID=MS.gene69119.t1.exon1;Parent=MS.gene69119.t1 |
| chr3.4 | CDS | 96406854 | 96406916 | 96406854 | ID=cds.MS.gene69119.t1;Parent=MS.gene69119.t1 |
| chr3.4 | exon | 96407015 | 96407087 | 96407015 | ID=MS.gene69119.t1.exon2;Parent=MS.gene69119.t1 |
| chr3.4 | CDS | 96407015 | 96407087 | 96407015 | ID=cds.MS.gene69119.t1;Parent=MS.gene69119.t1 |
| chr3.4 | exon | 96407167 | 96407541 | 96407167 | ID=MS.gene69119.t1.exon3;Parent=MS.gene69119.t1 |
| chr3.4 | CDS | 96407167 | 96407541 | 96407167 | ID=cds.MS.gene69119.t1;Parent=MS.gene69119.t1 |
| chr3.4 | exon | 96408935 | 96409275 | 96408935 | ID=MS.gene69119.t1.exon4;Parent=MS.gene69119.t1 |
| chr3.4 | CDS | 96408935 | 96409275 | 96408935 | ID=cds.MS.gene69119.t1;Parent=MS.gene69119.t1 |
| chr3.4 | exon | 96409420 | 96409638 | 96409420 | ID=MS.gene69119.t1.exon5;Parent=MS.gene69119.t1 |
| chr3.4 | CDS | 96409420 | 96409638 | 96409420 | ID=cds.MS.gene69119.t1;Parent=MS.gene69119.t1 |
| Gene Sequence |
| Protein sequence |
