AlfalfaGEDB | MS.gene69304

M. sativa cultivar XinJiangDaYe / MS.gene69304

KEGG: K05284
GO: GO:0003674 GO:0003824 GO:0005575 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0016021 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031224 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0071704 GO:0090407 GO:0110165 GO:1901135 GO:1901137 GO:1901564 GO:1901576 GO:1903509
PFAM: PF05007.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69304.t1	XP_003627964.1	94	433	26	0	1	433	1	433	6.40E-226	793.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69304.t1	Q500W7	65.7	434	144	2	3	431	15	448	3.9e-163	575.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69304.t1	G7LHL5	94.0	433	26	0	1	433	1	433	4.6e-226	793.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050752	MS.gene69304	-0.804568	2.03E-49	-1.69E-46
MS.gene051903	MS.gene69304	-0.801395	9.19E-49	-1.69E-46
MS.gene052242	MS.gene69304	0.830555	2.75E-55	-1.69E-46
MS.gene053058	MS.gene69304	-0.805103	1.57E-49	-1.69E-46
MS.gene054403	MS.gene69304	-0.804204	2.42E-49	-1.69E-46
MS.gene056787	MS.gene69304	-0.800222	1.59E-48	-1.69E-46
MS.gene057451	MS.gene69304	0.829713	4.41E-55	-1.69E-46
MS.gene05781	MS.gene69304	-0.819399	1.19E-52	-1.69E-46
MS.gene059872	MS.gene69304	0.805699	1.18E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69304.t1	MTR_8g040610	96.536	433	15	0	1	433	1	433	0.0	850
MS.gene69304.t1	MTR_1g058230	91.429	420	25	2	20	429	4	422	0.0	767
MS.gene69304.t1	MTR_8g040610	96.454	282	10	0	152	433	24	305	0.0	526
MS.gene69304.t1	MTR_6g051670	72.727	44	12	0	100	143	36	79	1.43e-17	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene69304.t1	AT5G22130	70.183	436	125	2	3	433	15	450	630
MS.gene69304.t1	AT5G22130	70.115	435	125	2	4	433	1	435	626
MS.gene69304.t1	AT5G22130	67.105	456	125	3	3	433	15	470	617

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Find 95 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATGGCAGAGACAAC+GGG	0.495574	8.2:+16582073	None:intergenic
AAAATGAAGCTTAAATGGGG+TGG	0.578593	8.2:-16580229	MS.gene69304:CDS
AAAGCTTATTCACAAGGAAC+AGG	0.453748	8.2:-16581076	MS.gene69304:CDS
AACAAGCAATTCCTGTCTTC+GGG	0.365531	8.2:+16581119	None:intergenic
AAGTTTCTCTTCTCTTCTGC+AGG	0.413221	8.2:-16584480	MS.gene69304:intron
AATCCATTTACGTTCACCAT+TGG	0.464929	8.2:-16582115	MS.gene69304:CDS
ACAAGGAACAGGATGATGTT+TGG	0.426211	8.2:-16581065	MS.gene69304:CDS
ACAGTTCCCGCGTGTCCCAA+TGG	0.540790	8.2:+16582099	None:intergenic
ACGTTCACCATTGGGACACG+CGG	0.637349	8.2:-16582106	MS.gene69304:CDS
AGAAACAGTCACCAATGGCA+TGG	0.643233	8.2:-16584743	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTGAGAGAGAAGTAAA+AGG	+	chr8.2:16583229-16583248	None:intergenic	30.0%
AAATTGATCGGAACCAAAAA+TGG	+	chr8.2:16581946-16581965	None:intergenic	30.0%
AACAACAGCTATTACGTAAT+TGG	+	chr8.2:16581371-16581390	None:intergenic	30.0%
AAGTCGTTATGTATAAGCTA+TGG	+	chr8.2:16580553-16580572	None:intergenic	30.0%
AATTGATCGGAACCAAAAAT+GGG	+	chr8.2:16581945-16581964	None:intergenic	30.0%
ACAACTTATAGACATGACAT+AGG	+	chr8.2:16581180-16581199	None:intergenic	30.0%
ACCAAAACTGCTTATAGTTA+AGG	+	chr8.2:16583118-16583137	None:intergenic	30.0%
ACCCTAAAATTTATTGCAGA+GGG	+	chr8.2:16582150-16582169	None:intergenic	30.0%
ATCATTGTCTGTCTTATGAA+AGG	-	chr8.2:16582683-16582702	MS.gene69304:intron	30.0%
ATCATTTCATTCATCTCTCT+TGG	-	chr8.2:16580223-16580242	MS.gene69304:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	16580000	16584751	16580000	ID=MS.gene69304
chr8.2	mRNA	16580000	16584751	16580000	ID=MS.gene69304.t1;Parent=MS.gene69304
chr8.2	exon	16584481	16584751	16584481	ID=MS.gene69304.t1.exon1;Parent=MS.gene69304.t1
chr8.2	CDS	16584481	16584751	16584481	ID=cds.MS.gene69304.t1;Parent=MS.gene69304.t1
chr8.2	exon	16582047	16582229	16582047	ID=MS.gene69304.t1.exon2;Parent=MS.gene69304.t1
chr8.2	CDS	16582047	16582229	16582047	ID=cds.MS.gene69304.t1;Parent=MS.gene69304.t1
chr8.2	exon	16580770	16581302	16580770	ID=MS.gene69304.t1.exon3;Parent=MS.gene69304.t1
chr8.2	CDS	16580770	16581302	16580770	ID=cds.MS.gene69304.t1;Parent=MS.gene69304.t1
chr8.2	exon	16580000	16580314	16580000	ID=MS.gene69304.t1.exon4;Parent=MS.gene69304.t1
chr8.2	CDS	16580000	16580314	16580000	ID=cds.MS.gene69304.t1;Parent=MS.gene69304.t1

Gene Sequence

>MS.gene69304

ATGGCATGGTTAGATATTCGTTCGCTTCTTACATTATCTGCAATTTTCCGTTTGATTTTGATCCTCTACGGAGAATGGCAAGATGCACACATGGAAGTTCGATACACTGACGTTGATTACATCGTGTTTTCTGATGCGGCTTCTCTTGTTGCTTCTGGTTTTTCTCCTTATCAAAGAACCACTTATCGTTATTCTCCTCTCCTCGCTTTTCTTCTTCTTCCTAATCATTTCATTCATCTCTCTTGGGGAAAGTTTCTCTTCTCTTCTGCAGGTATCTATCTTTCTTTCTTTAATTAATTTATTCACTCCTCTTAGCTTTTTTCAATAAGTGCTTACAACTTATGAAAAAAGTTGTAATCAATTTGTTTTTTTTTTCTTCTTATTTTTGAAAACTCTTTAGGATAGCTTATGAAAAAACTTACTTGAAATCATTTTTTTCTTTCTTTCTTTGTTTTGTTGTAGAAATAGCTTATACATAAGGACTTATATTAGAATTAGAAATGCTTATGCTGTAAGACATAAGCGCGTAAATAAGTTTATCCAAAAATGACCATAGCTTATACATAACGACTTCTGCGATAGCTGATCATTCATTAAGCGCTTCATTAAGTTGTTTATCCAAACATGACCATAGCTTATACGTAAGGTCATGTGATAACCGATTACTCATTAAGCGTTCGATTAAATTGGTTATCAAAAGGCATTCCAAGTGTTGGTTTGTGAGAGCTTCTGTGGAGGTAGATTGAAAGGTTTTCTGTGGCAGTGATTATGTATGTTATGTATAGAATCTGGATTCTCCTTGATGAGGGATGCACTTTATAGAGCAAAACAGGTGAGGAGTTATAACGGGTTATTAGGAAATTAGGAGAGGCCAGATGATAGAGATTTTGGAGAGAGATAGAAAGGCTGGAGAGGGGTTGGAGAGGATTCGGATTCAAGATCAATTTAATAGGTTATTTGTGACTGGGGCAATGTTGTTCTCGGTTTTACTGGGACCAGGGTAGCTGCTACCCAGTTATAACTATGCTCTTTCCTCTGTATAGTGTACTTCCCATTTTAGTTGAGGCAAATCCCTGCATATGATTAATGCAAGGATTATTTGAGTTGTCTTATTTGATTTTATTTATCTACTCACATAAACACTTGCGAGATTGTTTGACAGAGCTTAAGGAAATAGCCTATGTCATGTCTATAAGTTGTTTTTAGCCTATTTTGGTGAACTCTTCAGGATACGAAAACAACCTACATAAAATCTATTTTTTTTTTTTTTTTTTTATGTTAGCCTTGCTATGCATACCTGAAGCTCGGGTAAAATGTGAGGGTTGTGTTAGGCCTCGACAAAATTTTGTCGATTCTCTCTGACATGGACCAATTACGTAATAGCTGTTGTTTTTTGATTTGTATATTTTGTTGTAAAAATAGGTTATGCGTAAGCGCTTCCATGACAAATGATCATGCTATAAGCGCTTAATTAAGTTGTATATCCAAACTGGATCTTATGTGACAACCAATTATTCATTAAGTGCTCAATTAATCTGGCTATCCAAATGCAATCCAAATGTTTTTTGCGGCTGTGATTATGCATATTCTTTTATATAAAATATAGAATTTGGCTTCTCCTAGATGAGGGATGTACTTTAGAGAAAGAAAAAAAAAGGCGAGGAGTTAATAAACAGGTTATTATGAAATTAGAAGATAGAGAGCAAGAGAGGAATTTGGAGAGAGATAAGAAGGCCAGAGAGGGGTTAGAGAGAGCTCTCCTGGAGAAGATTCTGATTCTAGTCCAATGTATGGGGTTATTGGTGAGAGGATCATTGATGTCCTCTATTTTACTGGGATCTCCTTAGATGCTATCTAGTTATATAACTTATAACTATAGTCTTCTAAAATTACTCCCCATTTTAGGTGAGACAAATCCTTGTATATGATTAATTAATGCATACCCATTTTTGGTTCCGATCAATTTCACCTTTTATAGTTCTGAGATAAGAATGTTCTTTCTATCAAAGCCAAAATAAAGAAAAAGAAAAAGAAAACAGAAAATGTCGCTCCATCTTATAGTCAAAGTTACAAAAGACAAAGTGTTGCGAGTGTGAGACGTGGATTGAGGAATTTCTGTTTTGGGTTGATTTGAGCAACCATTTTGTCCCTCTGCAATAAATTTTAGGGTCTGTTTACTTTGTGAAAACATTGTGTTTTTATTTTACCTTGATGGGAACTATTGAAGTGAATCATTGTGATGGAGAGAAGATGAAATGCTAGTTAAAGATGAGCCATTTCCAGAAATAATGAAAACAGTTTTTTTGACATGTTCATCGTTTCCGGAAATGCATATAATCATTCACATCAAAAGTCTCTTACATGTGAACAAGTAAAATTAAAACAAATTTTAGAAAATGAAAATATAATACGTTTTCACAAAGTAAACAGGCCCTTTATTATTGTGTTGCTAAGCAATGAATATGCTGAATGGTCTTACATTTGTTACACCTAAGCAAATGTTTATTGTTTCTTAAATGCAGATATACTTGTGGGATATTTTATCTATTATATTCTAAAGCTGCAGAAGGTTCCTGAAAACCTCTGCAACTACTCTGTCATGGCATGGCTTTTGAATCCATTTACGTTCACCATTGGGACACGCGGGAACTGTGAACCCGTTGTCTCTGCCATGCTTTTGTGGATCATTGTCTGTCTTATGAAAGGTATGGTTCTGCTTCTGTATTGGATTAAATTGATGGTGCTGTTAGCTTGTTATAGCAATGTTCAGTTTCTTGCATTGTAATCTATAGTCTTTTCTATGTCCTGAAAATGTACTAGTACTTATGAGCAGTTGGTGGTCTTTTCTGCAAAACACAGTTTAACGTCACAAAATGAGCACTATCCAAAAATAGATTTTACATTCTTTAATAAGCGTAGAGAATTTAGCCAAAATAACTTTCATCTTTCCATTTTTCAGTATTTTTTACAAGCATTCACCACTGAAAACTGAAATGTTATGACCTGTTTTTTTTCCCACTTACCAAGCATTTAAAAGCTGAGAAGCCATATTATAATTTAAGATATAATATAAGAGGATCATTTGATACCCCTTGTTTCATGAGGGTACCGGTGCCCTTAACTATAAGCAGTTTTGGTATCCTTAAAGAAAAAGGAACGATACCAAGATAAACTTTCCAGTATATGAAATAAGTATATTGTTTGAGTAAAGGGGTAGAGAAGAATGCCTTTTACTTCTCTCTCAGTTTTCTTTTCTAGTTTTAAAACCAATTTGAGAAGATTAAGTTTGAGCCTTTCATTTGATTGTTAGTCTTGTTTGGTTGACACAGCAAAGAAAGGTTTTTTTTTTTTTTTTCCTTCAGTAAAAGGTGTAAAATGTTAGATGCTTGCATATATCTTGTTATGTTGTTTTTTCCCCCTTTTTCCTTCTTATTCCCCTTGGTTTGCAGGTAATGTGTTACAATCAGCTTTTTGGTATGGACTTGTTGTCCATTTCAGGATTTATCCTATAATTTATTCTATTCCTATAATCCTGGTTCTTGATCCGAACTTCTTCCCATCTGGTCAGAAACCCGTCCTACGGAACTGGAGTACTTTTCAGAAGGAGAGACCCGAAGACAGGAATTGCTTGTTCACCCCACTTAATTTCTTGAAAAGCTTATTCACAAGGAACAGGATGATGTTTGGACTGGTCTCAGGATTGGTTTTCCTCATATGTACTGGCCTGTTCTACTGCTTATATGGATGGGAATTCCTACATGAGGCGCTACTGTATCATCTTACTCGTACAGATCCAAGGCACAACTTCTCCATCTATTTCTATCATATATATCTTCATTATGGGAATGATATTTCAGTTGTGGAAAAGCTTGTCTCCTTTTTGCCACAGTTTTTGGTTCAGCTTGTTCTGATTTTTAGCTTTGCACGGGATTTGCCATTTTGCCTATTTGTGCAGACTGTATCATTTGTGGCCTTCAATAAGGTTTGTTAAGTAATACTGCCTCCATTCCTTTTTAATTATTGATTTTGTAGTAGAATTTTGTTCCTATTTAGTTGTCGTTTTAAAGTCGATTATAACATTAATTATTGTTTTGTGAATAACACCCTTAACTATTTATTGCAAATAGAGAAATAAGTTGAATAAGATAATAAATAAGGGTATTATAGGAAAAACATAAATGTTTCCATAAAAAGTTACAGTCTAGTTCTAATACGTATATCAGTATACATTTCCAACATTGCTACATATTTTCATTTAATTACAGTTCTAATTCTAATATATATATATATATATATATATATATATATATATATATAGACACACACACACACATATACATATGGCAACGGTCCTTTAAATCTAGTTAATCAACACACTTCCTCATATTTGAGCAGAAATGTATTGGACCACGCATCTGATCTCTGTTTATCTTGCAGGTGATTACCGCACAATACTTTGTTTGGTTCTTCTGCTTATTGCCTCTAATACTCCCATGGAGTAAAATGAAGCTTAAATGGGGTGGATTGTCTTGCATTCTTTTGTGGATCGGAGCTCAAACCCATTGGTTATTGTGGGGCTACCTTCTTGAGTTCAAGGGTAAAAATGTCTTTTTACAGCTCTGGGCAGCAAGCTTACTGTTTCTTGCAGCCAACATATTCATCCTTGCCATGATTATTCGTCAACATAATTGTTCTTCTGTTTTCAAAGCTTTAGAGAATACCCACTCCAAACACGTAACTAAACTTGAATGA

Protein sequence

>MS.gene69304.t1

MAWLDIRSLLTLSAIFRLILILYGEWQDAHMEVRYTDVDYIVFSDAASLVASGFSPYQRTTYRYSPLLAFLLLPNHFIHLSWGKFLFSSADILVGYFIYYILKLQKVPENLCNYSVMAWLLNPFTFTIGTRGNCEPVVSAMLLWIIVCLMKGNVLQSAFWYGLVVHFRIYPIIYSIPIILVLDPNFFPSGQKPVLRNWSTFQKERPEDRNCLFTPLNFLKSLFTRNRMMFGLVSGLVFLICTGLFYCLYGWEFLHEALLYHLTRTDPRHNFSIYFYHIYLHYGNDISVVEKLVSFLPQFLVQLVLIFSFARDLPFCLFVQTVSFVAFNKVITAQYFVWFFCLLPLILPWSKMKLKWGGLSCILLWIGAQTHWLLWGYLLEFKGKNVFLQLWAASLLFLAANIFILAMIIRQHNCSSVFKALENTHSKHVTKLE