Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69416.t1 | RHN42280.1 | 67.8 | 264 | 24 | 1 | 1 | 203 | 178 | 441 | 4.00E-93 | 350.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69416.t1 | Q9LV32 | 43.4 | 267 | 85 | 2 | 3 | 203 | 113 | 379 | 5.1e-57 | 222.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69416.t1 | A0A072THJ1 | 67.8 | 264 | 24 | 1 | 1 | 203 | 178 | 441 | 2.9e-93 | 350.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049404 | MS.gene69416 | 0.803255 | 3.80E-49 | -1.69E-46 |
MS.gene049850 | MS.gene69416 | 0.81727 | 3.60E-52 | -1.69E-46 |
MS.gene050020 | MS.gene69416 | 0.821706 | 3.50E-53 | -1.69E-46 |
MS.gene05016 | MS.gene69416 | 0.807538 | 4.81E-50 | -1.69E-46 |
MS.gene050807 | MS.gene69416 | 0.850128 | 2.07E-60 | -1.69E-46 |
MS.gene050808 | MS.gene69416 | 0.806657 | 7.40E-50 | -1.69E-46 |
MS.gene051719 | MS.gene69416 | 0.807452 | 5.02E-50 | -1.69E-46 |
MS.gene051720 | MS.gene69416 | 0.807193 | 5.70E-50 | -1.69E-46 |
MS.gene052323 | MS.gene69416 | 0.823769 | 1.16E-53 | -1.69E-46 |
MS.gene052611 | MS.gene69416 | 0.803743 | 3.01E-49 | -1.69E-46 |
MS.gene052665 | MS.gene69416 | 0.827941 | 1.18E-54 | -1.69E-46 |
MS.gene053563 | MS.gene69416 | 0.802519 | 5.40E-49 | -1.69E-46 |
MS.gene05364 | MS.gene69416 | 0.804789 | 1.83E-49 | -1.69E-46 |
MS.gene056553 | MS.gene69416 | 0.812914 | 3.34E-51 | -1.69E-46 |
MS.gene056643 | MS.gene69416 | 0.837628 | 4.65E-57 | -1.69E-46 |
MS.gene057060 | MS.gene69416 | 0.813706 | 2.23E-51 | -1.69E-46 |
MS.gene057869 | MS.gene69416 | 0.804834 | 1.79E-49 | -1.69E-46 |
MS.gene058625 | MS.gene69416 | 0.801709 | 7.92E-49 | -1.69E-46 |
MS.gene060587 | MS.gene69416 | 0.819752 | 9.85E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69416.t1 | MTR_0189s0050 | 67.424 | 264 | 25 | 2 | 1 | 203 | 178 | 441 | 2.89e-118 | 345 |
MS.gene69416.t1 | MTR_3g105990 | 66.540 | 263 | 27 | 2 | 2 | 203 | 181 | 443 | 3.34e-110 | 341 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69416.t1 | AT3G18090 | 55.422 | 166 | 71 | 1 | 38 | 203 | 153 | 315 | 1.92e-60 | 202 |
MS.gene69416.t1 | AT3G18090 | 55.422 | 166 | 71 | 1 | 38 | 203 | 153 | 315 | 2.06e-60 | 202 |
MS.gene69416.t1 | AT3G18090 | 55.422 | 166 | 71 | 1 | 38 | 203 | 153 | 315 | 4.49e-60 | 202 |
MS.gene69416.t1 | AT3G23780 | 54.217 | 166 | 73 | 1 | 38 | 203 | 271 | 433 | 1.34e-58 | 198 |
MS.gene69416.t1 | AT3G23780 | 54.217 | 166 | 73 | 1 | 38 | 203 | 271 | 433 | 1.34e-58 | 198 |
Find 48 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTATGTCTTTCCGAACATTA+AGG | 0.230507 | 3.3:-93089591 | MS.gene69416:CDS |
CATGGTGAAGGTTCTCTTAC+TGG | 0.253238 | 3.3:-93089537 | MS.gene69416:CDS |
GAGAAGAGAGAAATAACTAT+TGG | 0.324145 | 3.3:-93090560 | MS.gene69416:CDS |
ATTGTTGATCTCATCGATTA+TGG | 0.355906 | 3.3:-93089779 | MS.gene69416:CDS |
GTTCTCTTACTGGCTTATAC+TGG | 0.359333 | 3.3:-93089527 | MS.gene69416:CDS |
TATGTCTTTCCGAACATTAA+GGG | 0.378939 | 3.3:-93089590 | MS.gene69416:CDS |
AGACCTGACTTGACCATAAC+AGG | 0.387165 | 3.3:+93090530 | None:intergenic |
GGGATGACTTTCAAAATAAG+AGG | 0.403829 | 3.3:-93089484 | MS.gene69416:CDS |
AACAATTTCTTTATCTGAAG+TGG | 0.424244 | 3.3:+93089796 | None:intergenic |
TGGTCAAGTCAGGTCTCTGC+TGG | 0.429579 | 3.3:-93090523 | MS.gene69416:CDS |
AAATGTATCACATTTGTTGT+CGG | 0.435955 | 3.3:+93089706 | None:intergenic |
AGAAGAGAGAAATAACTATT+GGG | 0.440381 | 3.3:-93090559 | MS.gene69416:CDS |
GCACATGCTCGGAAGCGAAT+GGG | 0.446807 | 3.3:-93089413 | MS.gene69416:CDS |
CTGCCTGTTATGGTCAAGTC+AGG | 0.458511 | 3.3:-93090533 | MS.gene69416:CDS |
TATTGGGAGACTGCCTGTTA+TGG | 0.459953 | 3.3:-93090543 | MS.gene69416:CDS |
TCGGAAAGACATACAAGTTA+AGG | 0.463583 | 3.3:+93089600 | None:intergenic |
TGGAGGCTACTTTCTGATCA+AGG | 0.477024 | 3.3:-93090462 | MS.gene69416:CDS |
AATAAGAGGCTTGAGTTGAC+TGG | 0.485554 | 3.3:-93089470 | MS.gene69416:CDS |
TTTGTTGTCGGCTTCACGAA+TGG | 0.506428 | 3.3:+93089718 | None:intergenic |
GGCACGGTACCTGGCATACA+TGG | 0.508318 | 3.3:-93089555 | MS.gene69416:CDS |
GCTCTGCAAAGAGACCTCTA+TGG | 0.509833 | 3.3:-93089386 | MS.gene69416:CDS |
CAAATGTGATACATTTCGTA+GGG | 0.514699 | 3.3:-93089699 | MS.gene69416:CDS |
TTTCTTAGAGGAACGTGTCA+AGG | 0.521437 | 3.3:-93089660 | MS.gene69416:CDS |
TCTGATCAAGGGTGCTGAGA+AGG | 0.528492 | 3.3:-93090450 | MS.gene69416:intron |
ATCGATTATGGAGAGGGAGA+TGG | 0.529999 | 3.3:-93089767 | MS.gene69416:CDS |
TGCACATGCTCGGAAGCGAA+TGG | 0.531358 | 3.3:-93089414 | MS.gene69416:CDS |
GAACCTTCACCATGTATGCC+AGG | 0.538389 | 3.3:+93089546 | None:intergenic |
TTTATCTGAAGTGGCACCAA+GGG | 0.546561 | 3.3:+93089805 | None:intergenic |
TGCTCGGAAGCGAATGGGGA+AGG | 0.548332 | 3.3:-93089408 | MS.gene69416:CDS |
AAGTGCACTTTGCACATGCT+CGG | 0.551400 | 3.3:-93089424 | MS.gene69416:CDS |
ACAAATGTGATACATTTCGT+AGG | 0.562166 | 3.3:-93089700 | MS.gene69416:CDS |
GCACTCGTCAATAGATTCTG+AGG | 0.566118 | 3.3:+93089622 | None:intergenic |
TGATCAGAAAGTAGCCTCCA+TGG | 0.573050 | 3.3:+93090465 | None:intergenic |
GATCTCATCGATTATGGAGA+GGG | 0.573846 | 3.3:-93089773 | MS.gene69416:CDS |
GCATAAAATAGTATCCATAC+CGG | 0.577092 | 3.3:+93089827 | None:intergenic |
TTCTTAGAGGAACGTGTCAA+GGG | 0.577874 | 3.3:-93089659 | MS.gene69416:CDS |
GGAGGCTACTTTCTGATCAA+GGG | 0.578986 | 3.3:-93090461 | MS.gene69416:CDS |
CACATGCTCGGAAGCGAATG+GGG | 0.584920 | 3.3:-93089412 | MS.gene69416:CDS |
AAACATCTCAATCTCCATAG+AGG | 0.600669 | 3.3:+93089372 | None:intergenic |
TGTCTGTTGAGATTCCGGTA+TGG | 0.606023 | 3.3:-93089841 | MS.gene69416:intron |
CTTTATCTGAAGTGGCACCA+AGG | 0.607323 | 3.3:+93089804 | None:intergenic |
CACTCGTCAATAGATTCTGA+GGG | 0.638441 | 3.3:+93089623 | None:intergenic |
TGATCTCATCGATTATGGAG+AGG | 0.644956 | 3.3:-93089774 | MS.gene69416:CDS |
AGTGATTGTGAATTTGACCA+TGG | 0.651979 | 3.3:-93090482 | MS.gene69416:CDS |
GTACCTGGCATACATGGTGA+AGG | 0.671158 | 3.3:-93089549 | MS.gene69416:CDS |
TCGTCAATAGATTCTGAGGG+CGG | 0.676515 | 3.3:+93089626 | None:intergenic |
AAATGTGATACATTTCGTAG+GGG | 0.702228 | 3.3:-93089698 | MS.gene69416:CDS |
GATTGTGAATTTGACCATGG+AGG | 0.783133 | 3.3:-93090479 | MS.gene69416:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TACAAAATCCTATTTTTATA+GGG | - | chr3.3:93089758-93089777 | MS.gene69416:CDS | 15.0% |
!!! | TACATATTTTATACATCTTA+TGG | - | chr3.3:93089572-93089591 | MS.gene69416:CDS | 15.0% |
!!! | TTACAAAATCCTATTTTTAT+AGG | - | chr3.3:93089757-93089776 | MS.gene69416:CDS | 15.0% |
!!! | TTTTTAATCCCTATAAAAAT+AGG | + | chr3.3:93089769-93089788 | None:intergenic | 15.0% |
!! | AGTTTAACAAAATTTATGCA+CGG | + | chr3.3:93089637-93089656 | None:intergenic | 20.0% |
!! | ATTTGAGTAAAATTTATCCA+CGG | - | chr3.3:93089727-93089746 | MS.gene69416:CDS | 20.0% |
!!! | AAATACTCATTTTTTGTATG+AGG | - | chr3.3:93089685-93089704 | MS.gene69416:CDS | 20.0% |
! | AAATAGGATGGTTGTTAAAT+TGG | - | chr3.3:93090022-93090041 | MS.gene69416:intron | 25.0% |
! | AACAAAAGCAATTTACAAAC+AGG | + | chr3.3:93089906-93089925 | None:intergenic | 25.0% |
! | AACAATTTCTTTATCTGAAG+TGG | + | chr3.3:93090152-93090171 | None:intergenic | 25.0% |
! | AGAAGAGAGAAATAACTATT+GGG | - | chr3.3:93089386-93089405 | MS.gene69416:CDS | 25.0% |
! | CATTAAGGGATTAAAAAGAA+AGG | - | chr3.3:93090369-93090388 | MS.gene69416:intron | 25.0% |
! | GTTTAACAAAATTTATGCAC+GGG | + | chr3.3:93089636-93089655 | None:intergenic | 25.0% |
! | TTAGTTCCTAATGCAAAATA+GGG | + | chr3.3:93089665-93089684 | None:intergenic | 25.0% |
!! | CTTTTTAATCCCTTAATGTT+CGG | + | chr3.3:93090367-93090386 | None:intergenic | 25.0% |
!! | TTTAGTTCCTAATGCAAAAT+AGG | + | chr3.3:93089666-93089685 | None:intergenic | 25.0% |
!!! | AAATGTATCACATTTGTTGT+CGG | + | chr3.3:93090242-93090261 | None:intergenic | 25.0% |
!!! | ATTTTTAATTCCTTCAATGC+TGG | + | chr3.3:93090057-93090076 | None:intergenic | 25.0% |
AAATGTGATACATTTCGTAG+GGG | - | chr3.3:93090247-93090266 | MS.gene69416:intron | 30.0% | |
ACAAATGTGATACATTTCGT+AGG | - | chr3.3:93090245-93090264 | MS.gene69416:intron | 30.0% | |
CAAATGTGATACATTTCGTA+GGG | - | chr3.3:93090246-93090265 | MS.gene69416:intron | 30.0% | |
GAGAAGAGAGAAATAACTAT+TGG | - | chr3.3:93089385-93089404 | MS.gene69416:CDS | 30.0% | |
GCATAAAATAGTATCCATAC+CGG | + | chr3.3:93090121-93090140 | None:intergenic | 30.0% | |
TATGTCTTTCCGAACATTAA+GGG | - | chr3.3:93090355-93090374 | MS.gene69416:intron | 30.0% | |
! | AAATATTTCTGAAGAGGCTT+TGG | - | chr3.3:93089949-93089968 | MS.gene69416:intron | 30.0% |
! | AAGAGCAAATATTTCTGAAG+AGG | - | chr3.3:93089943-93089962 | MS.gene69416:intron | 30.0% |
! | AATATTTCTGAAGAGGCTTT+GGG | - | chr3.3:93089950-93089969 | MS.gene69416:intron | 30.0% |
! | ATTGTTGATCTCATCGATTA+TGG | - | chr3.3:93090166-93090185 | MS.gene69416:intron | 30.0% |
! | GATTTTGTAAGTTTAATCCG+TGG | + | chr3.3:93089747-93089766 | None:intergenic | 30.0% |
! | TTTAGTCCCTATTTTGCATT+AGG | - | chr3.3:93089656-93089675 | MS.gene69416:CDS | 30.0% |
!!! | TTTTTTGTCTGTTGAGATTC+CGG | - | chr3.3:93090099-93090118 | MS.gene69416:intron | 30.0% |
AAATGAAGAGAAGTTGCTCA+CGG | - | chr3.3:93090073-93090092 | MS.gene69416:intron | 35.0% | |
ACAAAATTTATGCACGGGAA+CGG | + | chr3.3:93089631-93089650 | None:intergenic | 35.0% | |
ACAGATGAAGAGAAATAGGA+TGG | - | chr3.3:93090010-93090029 | MS.gene69416:intron | 35.0% | |
AGGGATTAAAAAGAAAGGCA+CGG | - | chr3.3:93090374-93090393 | MS.gene69416:intron | 35.0% | |
AGTGACAGATGAAGAGAAAT+AGG | - | chr3.3:93090006-93090025 | MS.gene69416:intron | 35.0% | |
AGTGATTGTGAATTTGACCA+TGG | - | chr3.3:93089463-93089482 | MS.gene69416:CDS | 35.0% | |
GGGATGACTTTCAAAATAAG+AGG | - | chr3.3:93090461-93090480 | MS.gene69416:CDS | 35.0% | |
GGGTTTCAAATATTCCGTAT+TGG | - | chr3.3:93089970-93089989 | MS.gene69416:intron | 35.0% | |
GTATGTCTTTCCGAACATTA+AGG | - | chr3.3:93090354-93090373 | MS.gene69416:intron | 35.0% | |
TAGGATGGTTGTTAAATTGG+TGG | - | chr3.3:93090025-93090044 | MS.gene69416:intron | 35.0% | |
TCGGAAAGACATACAAGTTA+AGG | + | chr3.3:93090348-93090367 | None:intergenic | 35.0% | |
TTATACTGGACGCCAAAAAA+CGG | - | chr3.3:93090432-93090451 | MS.gene69416:intron | 35.0% | |
TTGTATGCAACTGTCCAATA+CGG | + | chr3.3:93089987-93090006 | None:intergenic | 35.0% | |
! | GAATGCTGTTCTTTTCTTAG+AGG | - | chr3.3:93090273-93090292 | MS.gene69416:intron | 35.0% |
! | TGGATACTATTTTATGCCCT+TGG | - | chr3.3:93090124-93090143 | MS.gene69416:intron | 35.0% |
ACGCCAAAAAACGGATAACA+GGG | - | chr3.3:93090441-93090460 | MS.gene69416:intron | 40.0% | |
CACTCGTCAATAGATTCTGA+GGG | + | chr3.3:93090325-93090344 | None:intergenic | 40.0% | |
GATTGTGAATTTGACCATGG+AGG | - | chr3.3:93089466-93089485 | MS.gene69416:CDS | 40.0% | |
TTCTTAGAGGAACGTGTCAA+GGG | - | chr3.3:93090286-93090305 | MS.gene69416:intron | 40.0% | |
TTTCTTAGAGGAACGTGTCA+AGG | - | chr3.3:93090285-93090304 | MS.gene69416:intron | 40.0% | |
! | GATCTCATCGATTATGGAGA+GGG | - | chr3.3:93090172-93090191 | MS.gene69416:intron | 40.0% |
! | TGATCTCATCGATTATGGAG+AGG | - | chr3.3:93090171-93090190 | MS.gene69416:intron | 40.0% |
! | TTTATCTGAAGTGGCACCAA+GGG | + | chr3.3:93090143-93090162 | None:intergenic | 40.0% |
!! | AATAAGAGGCTTGAGTTGAC+TGG | - | chr3.3:93090475-93090494 | MS.gene69416:CDS | 40.0% |
!! | GTTCTCTTACTGGCTTATAC+TGG | - | chr3.3:93090418-93090437 | MS.gene69416:intron | 40.0% |
!!! | CATCCCTGTTATCCGTTTTT+TGG | + | chr3.3:93090447-93090466 | None:intergenic | 40.0% |
AAGTGCACTTTGCACATGCT+CGG | - | chr3.3:93090521-93090540 | MS.gene69416:CDS | 45.0% | |
ATCGATTATGGAGAGGGAGA+TGG | - | chr3.3:93090178-93090197 | MS.gene69416:intron | 45.0% | |
CATGGTGAAGGTTCTCTTAC+TGG | - | chr3.3:93090408-93090427 | MS.gene69416:intron | 45.0% | |
GACGCCAAAAAACGGATAAC+AGG | - | chr3.3:93090440-93090459 | MS.gene69416:intron | 45.0% | |
GCACTCGTCAATAGATTCTG+AGG | + | chr3.3:93090326-93090345 | None:intergenic | 45.0% | |
GGAACGGCTGTGAATTGTAT+AGG | + | chr3.3:93089615-93089634 | None:intergenic | 45.0% | |
TATTGGGAGACTGCCTGTTA+TGG | - | chr3.3:93089402-93089421 | MS.gene69416:CDS | 45.0% | |
TGATCAGAAAGTAGCCTCCA+TGG | + | chr3.3:93089483-93089502 | None:intergenic | 45.0% | |
TGTCTGTTGAGATTCCGGTA+TGG | - | chr3.3:93090104-93090123 | MS.gene69416:intron | 45.0% | |
! | AAAAAGAAAGGCACGGTACC+TGG | - | chr3.3:93090381-93090400 | MS.gene69416:intron | 45.0% |
! | AGACCTGACTTGACCATAAC+AGG | + | chr3.3:93089418-93089437 | None:intergenic | 45.0% |
! | CTTTATCTGAAGTGGCACCA+AGG | + | chr3.3:93090144-93090163 | None:intergenic | 45.0% |
! | GGAGGCTACTTTCTGATCAA+GGG | - | chr3.3:93089484-93089503 | MS.gene69416:CDS | 45.0% |
! | GTGGAGAATTCCAGCATTGA+AGG | - | chr3.3:93090044-93090063 | MS.gene69416:intron | 45.0% |
! | TCGTCAATAGATTCTGAGGG+CGG | + | chr3.3:93090322-93090341 | None:intergenic | 45.0% |
! | TGGAGGCTACTTTCTGATCA+AGG | - | chr3.3:93089483-93089502 | MS.gene69416:CDS | 45.0% |
!! | TTTGTTGTCGGCTTCACGAA+TGG | + | chr3.3:93090230-93090249 | None:intergenic | 45.0% |
CTGCCTGTTATGGTCAAGTC+AGG | - | chr3.3:93089412-93089431 | MS.gene69416:CDS | 50.0% | |
GAACCTTCACCATGTATGCC+AGG | + | chr3.3:93090402-93090421 | None:intergenic | 50.0% | |
GCTCTGCAAAGAGACCTCTA+TGG | - | chr3.3:93090559-93090578 | MS.gene69416:CDS | 50.0% | |
GTACCTGGCATACATGGTGA+AGG | - | chr3.3:93090396-93090415 | MS.gene69416:intron | 50.0% | |
!! | TCTGATCAAGGGTGCTGAGA+AGG | - | chr3.3:93089495-93089514 | MS.gene69416:CDS | 50.0% |
CACATGCTCGGAAGCGAATG+GGG | - | chr3.3:93090533-93090552 | MS.gene69416:CDS | 55.0% | |
GCACATGCTCGGAAGCGAAT+GGG | - | chr3.3:93090532-93090551 | MS.gene69416:CDS | 55.0% | |
TGCACATGCTCGGAAGCGAA+TGG | - | chr3.3:93090531-93090550 | MS.gene69416:CDS | 55.0% | |
TGGTCAAGTCAGGTCTCTGC+TGG | - | chr3.3:93089422-93089441 | MS.gene69416:CDS | 55.0% | |
GGCACGGTACCTGGCATACA+TGG | - | chr3.3:93090390-93090409 | MS.gene69416:intron | 60.0% | |
TGCTCGGAAGCGAATGGGGA+AGG | - | chr3.3:93090537-93090556 | MS.gene69416:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 93089379 | 93090588 | 93089379 | ID=MS.gene69416 |
chr3.3 | mRNA | 93089379 | 93090588 | 93089379 | ID=MS.gene69416.t1;Parent=MS.gene69416 |
chr3.3 | exon | 93090451 | 93090588 | 93090451 | ID=MS.gene69416.t1.exon1;Parent=MS.gene69416.t1 |
chr3.3 | CDS | 93090451 | 93090588 | 93090451 | ID=cds.MS.gene69416.t1;Parent=MS.gene69416.t1 |
chr3.3 | exon | 93089379 | 93089852 | 93089379 | ID=MS.gene69416.t1.exon2;Parent=MS.gene69416.t1 |
chr3.3 | CDS | 93089379 | 93089852 | 93089379 | ID=cds.MS.gene69416.t1;Parent=MS.gene69416.t1 |
Gene Sequence |
Protein sequence |