Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69564.t1 | RHN66872.1 | 71.4 | 402 | 12 | 2 | 1 | 299 | 128 | 529 | 1.20E-149 | 539.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69564.t1 | Q9SHJ5 | 46.3 | 408 | 107 | 6 | 1 | 296 | 178 | 585 | 7.5e-89 | 328.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69564.t1 | A0A396IMT2 | 71.4 | 402 | 12 | 2 | 1 | 299 | 128 | 529 | 8.3e-150 | 539.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene69564 | 0.817817 | 2.71E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene69564 | 0.812639 | 3.83E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene69564 | 0.821486 | 3.93E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene69564 | 0.819776 | 9.73E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene69564 | 0.810704 | 1.01E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene69564 | 0.804752 | 1.86E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene69564 | 0.800387 | 1.48E-48 | -1.69E-46 |
| MS.gene05553 | MS.gene69564 | 0.806065 | 9.86E-50 | -1.69E-46 |
| MS.gene055859 | MS.gene69564 | 0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene69564 | 0.806566 | 7.73E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene69564 | 0.812667 | 3.78E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene69564 | 0.832914 | 7.20E-56 | -1.69E-46 |
| MS.gene059462 | MS.gene69564 | 0.80063 | 1.32E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69564.t1 | MTR_3g048330 | 97.838 | 185 | 4 | 0 | 115 | 299 | 93 | 277 | 1.17e-131 | 375 |
| MS.gene69564.t1 | MTR_3g448430 | 89.503 | 181 | 19 | 0 | 115 | 295 | 331 | 511 | 9.82e-115 | 340 |
| MS.gene69564.t1 | MTR_3g448430 | 93.694 | 111 | 7 | 0 | 1 | 111 | 116 | 226 | 4.85e-69 | 223 |
| MS.gene69564.t1 | MTR_5g091660 | 82.514 | 183 | 32 | 0 | 115 | 297 | 349 | 531 | 4.64e-104 | 314 |
| MS.gene69564.t1 | MTR_5g091660 | 60.360 | 111 | 44 | 0 | 1 | 111 | 133 | 243 | 8.89e-40 | 146 |
| MS.gene69564.t1 | MTR_5g061520 | 63.441 | 186 | 67 | 1 | 115 | 299 | 300 | 485 | 2.16e-81 | 254 |
| MS.gene69564.t1 | MTR_7g067380 | 60.000 | 185 | 74 | 0 | 115 | 299 | 311 | 495 | 8.68e-76 | 240 |
| MS.gene69564.t1 | MTR_7g067380 | 39.130 | 115 | 65 | 3 | 1 | 111 | 96 | 209 | 2.51e-15 | 76.3 |
| MS.gene69564.t1 | MTR_4g415290 | 58.378 | 185 | 77 | 0 | 115 | 299 | 309 | 493 | 1.63e-75 | 239 |
| MS.gene69564.t1 | MTR_4g415290 | 37.931 | 116 | 66 | 4 | 1 | 111 | 93 | 207 | 6.10e-14 | 72.4 |
| MS.gene69564.t1 | MTR_1g086650 | 57.073 | 205 | 81 | 3 | 102 | 299 | 329 | 533 | 5.28e-75 | 239 |
| MS.gene69564.t1 | MTR_1g040500 | 59.783 | 184 | 74 | 0 | 115 | 298 | 311 | 494 | 4.06e-74 | 238 |
| MS.gene69564.t1 | MTR_1g040500 | 41.228 | 114 | 63 | 2 | 1 | 111 | 92 | 204 | 1.16e-18 | 86.3 |
| MS.gene69564.t1 | MTR_5g080360 | 59.341 | 182 | 74 | 0 | 115 | 296 | 292 | 473 | 3.33e-71 | 228 |
| MS.gene69564.t1 | MTR_5g080360 | 31.034 | 116 | 74 | 3 | 1 | 111 | 74 | 188 | 5.29e-12 | 66.2 |
| MS.gene69564.t1 | MTR_8g030620 | 54.645 | 183 | 82 | 1 | 115 | 296 | 316 | 498 | 3.20e-68 | 221 |
| MS.gene69564.t1 | MTR_8g030620 | 34.483 | 116 | 70 | 3 | 1 | 111 | 99 | 213 | 4.62e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69564.t1 | AT1G06520 | 74.176 | 182 | 47 | 0 | 115 | 296 | 404 | 585 | 3.64e-93 | 287 |
| MS.gene69564.t1 | AT1G06520 | 43.697 | 119 | 59 | 4 | 1 | 111 | 178 | 296 | 4.48e-22 | 96.7 |
| MS.gene69564.t1 | AT2G38110 | 61.622 | 185 | 71 | 0 | 115 | 299 | 314 | 498 | 8.40e-78 | 245 |
| MS.gene69564.t1 | AT2G38110 | 33.898 | 118 | 70 | 4 | 1 | 111 | 96 | 212 | 3.65e-13 | 70.1 |
| MS.gene69564.t1 | AT1G02390 | 61.257 | 191 | 67 | 3 | 115 | 298 | 340 | 530 | 2.60e-77 | 245 |
| MS.gene69564.t1 | AT4G01950 | 60.753 | 186 | 69 | 3 | 115 | 297 | 335 | 519 | 5.61e-73 | 233 |
| MS.gene69564.t1 | AT4G01950 | 60.753 | 186 | 69 | 3 | 115 | 297 | 363 | 547 | 1.94e-72 | 233 |
| MS.gene69564.t1 | AT1G01610 | 56.831 | 183 | 78 | 1 | 115 | 296 | 312 | 494 | 1.49e-71 | 229 |
| MS.gene69564.t1 | AT1G01610 | 35.897 | 117 | 68 | 4 | 1 | 111 | 94 | 209 | 5.61e-12 | 66.2 |
| MS.gene69564.t1 | AT3G11430 | 59.669 | 181 | 73 | 0 | 115 | 295 | 301 | 481 | 1.54e-71 | 229 |
| MS.gene69564.t1 | AT3G11430 | 40.336 | 119 | 64 | 5 | 1 | 114 | 83 | 199 | 6.37e-16 | 78.2 |
| MS.gene69564.t1 | AT5G06090 | 58.242 | 182 | 76 | 0 | 115 | 296 | 299 | 480 | 2.49e-69 | 223 |
| MS.gene69564.t1 | AT5G06090 | 38.793 | 116 | 64 | 5 | 1 | 111 | 81 | 194 | 4.91e-15 | 75.5 |
| MS.gene69564.t1 | AT4G00400 | 55.191 | 183 | 81 | 1 | 115 | 296 | 311 | 493 | 2.12e-68 | 221 |
| MS.gene69564.t1 | AT4G00400 | 36.207 | 116 | 68 | 3 | 1 | 111 | 94 | 208 | 7.45e-15 | 75.1 |
| MS.gene69564.t1 | AT3G11325 | 56.800 | 125 | 54 | 0 | 172 | 296 | 246 | 370 | 1.28e-48 | 166 |
| MS.gene69564.t1 | AT3G11325 | 56.800 | 125 | 54 | 0 | 172 | 296 | 249 | 373 | 1.39e-48 | 166 |
Find 53 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAAACTCATTGTCTTTAT+AGG | 0.150817 | 3.1:+33886827 | None:intergenic |
| ACTTCACTGGTTTGATTTCT+AGG | 0.170723 | 3.1:-33889353 | MS.gene69564:CDS |
| AGTGCTCTCATGGATTATTT+TGG | 0.183297 | 3.1:-33889309 | MS.gene69564:CDS |
| CCAGCACAAGTGAGTTCTTT+TGG | 0.209499 | 3.1:+33886530 | None:intergenic |
| GGATATAGAAGGCCTGATTT+AGG | 0.310254 | 3.1:-33889288 | MS.gene69564:CDS |
| AAAAGAGTTGGGTGATGCTT+TGG | 0.317799 | 3.1:-33886471 | MS.gene69564:CDS |
| AGAAGGCCTGATTTAGGAAT+TGG | 0.322699 | 3.1:-33889282 | MS.gene69564:CDS |
| CATGGAGAATCTTAACCTTA+AGG | 0.353285 | 3.1:-33889511 | MS.gene69564:CDS |
| TCCCTACAAGTTGTTCCTTC+AGG | 0.358949 | 3.1:+33886737 | None:intergenic |
| GATAAATATATGATGTTAGC+TGG | 0.365163 | 3.1:-33886419 | MS.gene69564:CDS |
| AGCTAGTGGATTAAAATGTT+TGG | 0.371794 | 3.1:-33886615 | MS.gene69564:CDS |
| AAAGAGTTGGGTGATGCTTT+GGG | 0.380680 | 3.1:-33886470 | MS.gene69564:CDS |
| TAGGCATGGTTTGGTTGATA+AGG | 0.411704 | 3.1:-33889334 | MS.gene69564:CDS |
| TATAGTGGAAGGGTTTCTTA+AGG | 0.415468 | 3.1:-33889430 | MS.gene69564:CDS |
| AGATTCTCCATGTAAAACTT+TGG | 0.427361 | 3.1:+33889522 | None:intergenic |
| TAATATTGAAGTACTTGAAA+AGG | 0.432261 | 3.1:-33886555 | MS.gene69564:CDS |
| GTGCTTCCAATTCCTAAATC+AGG | 0.432690 | 3.1:+33889276 | None:intergenic |
| TTTGATTTCTAGGCATGGTT+TGG | 0.440519 | 3.1:-33889343 | MS.gene69564:CDS |
| TTTCTTAAGGAATATTTGAA+TGG | 0.451191 | 3.1:-33889417 | MS.gene69564:CDS |
| TTGTGTGCCTAGAGTTATAG+TGG | 0.476561 | 3.1:-33889445 | MS.gene69564:CDS |
| ACAAAACCTCACAAGCCTTA+AGG | 0.479431 | 3.1:+33889496 | None:intergenic |
| TTTGAGAAAACCTTTGACTA+CGG | 0.479760 | 3.1:-33886888 | MS.gene69564:CDS |
| ACTGTTGGATGCTACTTCAC+TGG | 0.486698 | 3.1:-33889366 | MS.gene69564:CDS |
| ATATAATTAGCCACTTCAAA+AGG | 0.492994 | 3.1:+33886497 | None:intergenic |
| ACTGGTTTGATTTCTAGGCA+TGG | 0.499174 | 3.1:-33889348 | MS.gene69564:CDS |
| CCAAAAGAACTCACTTGTGC+TGG | 0.501281 | 3.1:-33886530 | MS.gene69564:CDS |
| GTCCTGAAGGAACAACTTGT+AGG | 0.502469 | 3.1:-33886739 | MS.gene69564:CDS |
| GAACTAAATCTCAATAGATA+AGG | 0.509333 | 3.1:+33886713 | None:intergenic |
| TGATAAGGATAGTGCTCTCA+TGG | 0.519997 | 3.1:-33889319 | MS.gene69564:CDS |
| AAAGAACTCACTTGTGCTGG+TGG | 0.522091 | 3.1:-33886527 | MS.gene69564:CDS |
| AGTACTTCAATATTATAACT+AGG | 0.538955 | 3.1:+33886563 | None:intergenic |
| ATAAATATATGATGTTAGCT+GGG | 0.539552 | 3.1:-33886418 | MS.gene69564:CDS |
| TCAATATTATAACTAGGCCA+TGG | 0.546573 | 3.1:+33886569 | None:intergenic |
| TCTTAACCTTAAGGCTTGTG+AGG | 0.549494 | 3.1:-33889502 | MS.gene69564:CDS |
| GTGCCTAGAGTTATAGTGGA+AGG | 0.556791 | 3.1:-33889441 | MS.gene69564:CDS |
| TCCTGAAGGAACAACTTGTA+GGG | 0.557385 | 3.1:-33886738 | MS.gene69564:CDS |
| GCTACAGAGTTACACACTGT+TGG | 0.560729 | 3.1:-33889381 | MS.gene69564:CDS |
| CTATAAGTTACCGTAGTCAA+AGG | 0.562718 | 3.1:+33886878 | None:intergenic |
| ATGATGTTAGCTGGGAATGA+AGG | 0.571083 | 3.1:-33886410 | MS.gene69564:CDS |
| AGGACATGGAAATGATTGCA+AGG | 0.571708 | 3.1:-33889554 | None:intergenic |
| TGCCTAGAGTTATAGTGGAA+GGG | 0.573670 | 3.1:-33889440 | MS.gene69564:CDS |
| TGCTGATGAGATTGTTCCTG+TGG | 0.580570 | 3.1:-33886675 | MS.gene69564:CDS |
| ATGCAAAGGTTGTTAAGTGA+AGG | 0.581573 | 3.1:-33886776 | MS.gene69564:CDS |
| AACCCTTCCACTATAACTCT+AGG | 0.586206 | 3.1:+33889438 | None:intergenic |
| GATTTAGTTGTGTGTCCTGA+AGG | 0.591518 | 3.1:-33886752 | MS.gene69564:CDS |
| ACATTAGCATTCATAGCCAC+AGG | 0.592352 | 3.1:+33886659 | None:intergenic |
| GGACATGGAAATGATTGCAA+GGG | 0.595734 | 3.1:-33889553 | None:intergenic |
| TTGAGTGTACAAATATTACA+AGG | 0.604181 | 3.1:-33886445 | MS.gene69564:CDS |
| AAGATAGAGAAACAATGCAA+AGG | 0.634514 | 3.1:-33886790 | MS.gene69564:CDS |
| GTGTACAAATATTACAAGGA+GGG | 0.638648 | 3.1:-33886441 | MS.gene69564:CDS |
| TAAAGACAATGAGTTTAACA+AGG | 0.642663 | 3.1:-33886823 | MS.gene69564:CDS |
| AGTGTACAAATATTACAAGG+AGG | 0.666630 | 3.1:-33886442 | MS.gene69564:CDS |
| AAAGACAATGAGTTTAACAA+GGG | 0.667075 | 3.1:-33886822 | MS.gene69564:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTCAATAACAAATAA+AGG | - | chr3.1:33888969-33888988 | MS.gene69564:intron | 10.0% |
| !! | TTAATATGGAATAATTAATA+TGG | + | chr3.1:33888640-33888659 | None:intergenic | 10.0% |
| !!! | AAATTTTTTAAAAGTATCTT+TGG | - | chr3.1:33886774-33886793 | MS.gene69564:CDS | 10.0% |
| !!! | AGATACTTTTAAAAAATTTA+TGG | + | chr3.1:33886773-33886792 | None:intergenic | 10.0% |
| !!! | TTGTTATTGAATTTTTTTTA+GGG | + | chr3.1:33888965-33888984 | None:intergenic | 10.0% |
| !!! | TTTGTTATTGAATTTTTTTT+AGG | + | chr3.1:33888966-33888985 | None:intergenic | 10.0% |
| !! | AACAATGTATAATATATACA+AGG | - | chr3.1:33888311-33888330 | MS.gene69564:intron | 15.0% |
| !! | AATAATCTATAAATTGTCAA+TGG | + | chr3.1:33888852-33888871 | None:intergenic | 15.0% |
| !! | AATATGGAAAATGAAATTAA+AGG | + | chr3.1:33888624-33888643 | None:intergenic | 15.0% |
| !! | AATTACTATTGATCATTAAT+CGG | - | chr3.1:33887976-33887995 | MS.gene69564:intron | 15.0% |
| !! | AATTATATACAAAAAGAGTT+GGG | - | chr3.1:33889455-33889474 | MS.gene69564:CDS | 15.0% |
| !! | ATTAATTGTATACATTCTAT+AGG | - | chr3.1:33886823-33886842 | MS.gene69564:CDS | 15.0% |
| !! | CTATCATTATCATATATTTA+TGG | + | chr3.1:33888676-33888695 | None:intergenic | 15.0% |
| !! | GGTAGTTAAAATTTAATAAT+GGG | - | chr3.1:33887629-33887648 | MS.gene69564:intron | 15.0% |
| !! | TAATTATATACAAAAAGAGT+TGG | - | chr3.1:33889454-33889473 | MS.gene69564:CDS | 15.0% |
| !!! | AAGTTTTTATTTTTCTTGAT+AGG | - | chr3.1:33886850-33886869 | MS.gene69564:CDS | 15.0% |
| !!! | ACAATTTATAGATTATTTCT+TGG | - | chr3.1:33888855-33888874 | MS.gene69564:intron | 15.0% |
| !!! | CAATTTATAGATTATTTCTT+GGG | - | chr3.1:33888856-33888875 | MS.gene69564:intron | 15.0% |
| !!! | CATAAATATATGATAATGAT+AGG | - | chr3.1:33888674-33888693 | MS.gene69564:intron | 15.0% |
| !!! | TTTTAGCTATATTATATTCT+TGG | - | chr3.1:33886743-33886762 | MS.gene69564:CDS | 15.0% |
| !! | ACAATAGTTTATTACAAATG+GGG | - | chr3.1:33888879-33888898 | MS.gene69564:intron | 20.0% |
| !! | AGTACTTCAATATTATAACT+AGG | + | chr3.1:33889377-33889396 | None:intergenic | 20.0% |
| !! | ATAAAAGTAGGAAAATTCTA+TGG | - | chr3.1:33887654-33887673 | MS.gene69564:intron | 20.0% |
| !! | ATAAATATATGATGTTAGCT+GGG | - | chr3.1:33889519-33889538 | MS.gene69564:CDS | 20.0% |
| !! | ATAAATATGTTCCGTATAAA+TGG | - | chr3.1:33887464-33887483 | MS.gene69564:intron | 20.0% |
| !! | ATATATTTATGGAGTTAGAT+GGG | + | chr3.1:33888665-33888684 | None:intergenic | 20.0% |
| !! | CAAACTTAAATTTGAATTGT+TGG | - | chr3.1:33887438-33887457 | MS.gene69564:intron | 20.0% |
| !! | CATTAAACTCTCATTAATAT+CGG | - | chr3.1:33888103-33888122 | MS.gene69564:intron | 20.0% |
| !! | GACAATAGTTTATTACAAAT+GGG | - | chr3.1:33888878-33888897 | MS.gene69564:intron | 20.0% |
| !! | GGGTAGTTAAAATTTAATAA+TGG | - | chr3.1:33887628-33887647 | MS.gene69564:intron | 20.0% |
| !! | GGTATAACTATAAATATCAA+AGG | - | chr3.1:33888924-33888943 | MS.gene69564:intron | 20.0% |
| !! | TAGTAAGTTCTTAAAATGAA+AGG | - | chr3.1:33886879-33886898 | MS.gene69564:CDS | 20.0% |
| !! | TTGTCAAAAAAAGTAAAATG+TGG | - | chr3.1:33888481-33888500 | MS.gene69564:intron | 20.0% |
| !! | TTGTCAAAATATATGTACAA+AGG | - | chr3.1:33888245-33888264 | MS.gene69564:intron | 20.0% |
| !! | TTTCTTAAGGAATATTTGAA+TGG | - | chr3.1:33886520-33886539 | MS.gene69564:CDS | 20.0% |
| !!! | AATATTTTACATGTGTTTCT+AGG | - | chr3.1:33887128-33887147 | MS.gene69564:intron | 20.0% |
| !!! | CAATTCAAATTTAAGTTTGT+CGG | + | chr3.1:33887437-33887456 | None:intergenic | 20.0% |
| !!! | TAATATTGAAGTACTTGAAA+AGG | - | chr3.1:33889382-33889401 | MS.gene69564:CDS | 20.0% |
| !!! | TCATTTTATCTCTTATTGTA+AGG | - | chr3.1:33886699-33886718 | MS.gene69564:CDS | 20.0% |
| !!! | TGTACGTTTTCATTTATTTT+TGG | - | chr3.1:33888518-33888537 | MS.gene69564:intron | 20.0% |
| !!! | TTAATGGACAATACTTTTAT+GGG | + | chr3.1:33888089-33888108 | None:intergenic | 20.0% |
| !!! | TTTAATGGACAATACTTTTA+TGG | + | chr3.1:33888090-33888109 | None:intergenic | 20.0% |
| !!! | TTTTGGCATATGATTATAAT+AGG | - | chr3.1:33888535-33888554 | MS.gene69564:intron | 20.0% |
| ! | AAACACAAGTACCATTTATA+CGG | + | chr3.1:33887478-33887497 | None:intergenic | 25.0% |
| ! | AAAGACAATGAGTTTAACAA+GGG | - | chr3.1:33889115-33889134 | MS.gene69564:intron | 25.0% |
| ! | AAGCCATTAATATTTCATGA+TGG | - | chr3.1:33888759-33888778 | MS.gene69564:intron | 25.0% |
| ! | AGAAACATTCAATGTCAAAA+AGG | + | chr3.1:33887006-33887025 | None:intergenic | 25.0% |
| ! | AGTTCTTAAAATGAAAGGAA+TGG | - | chr3.1:33886884-33886903 | MS.gene69564:CDS | 25.0% |
| ! | ATATAATTAGCCACTTCAAA+AGG | + | chr3.1:33889443-33889462 | None:intergenic | 25.0% |
| ! | CATATATTTATGGAGTTAGA+TGG | + | chr3.1:33888666-33888685 | None:intergenic | 25.0% |
| ! | CGATATTAATGAGAGTTTAA+TGG | + | chr3.1:33888105-33888124 | None:intergenic | 25.0% |
| ! | CTTCCATCATGAAATATTAA+TGG | + | chr3.1:33888765-33888784 | None:intergenic | 25.0% |
| ! | GAACTAAATCTCAATAGATA+AGG | + | chr3.1:33889227-33889246 | None:intergenic | 25.0% |
| ! | GATAAATATATGATGTTAGC+TGG | - | chr3.1:33889518-33889537 | MS.gene69564:CDS | 25.0% |
| ! | GCTCAAATCAAATGTTTATA+GGG | + | chr3.1:33886948-33886967 | None:intergenic | 25.0% |
| ! | GGACAATAGTTTATTACAAA+TGG | - | chr3.1:33888877-33888896 | MS.gene69564:intron | 25.0% |
| ! | GTAGTTAGTTAGATAAGATA+AGG | + | chr3.1:33888580-33888599 | None:intergenic | 25.0% |
| ! | GTTAAACTCATTGTCTTTAT+AGG | + | chr3.1:33889113-33889132 | None:intergenic | 25.0% |
| ! | TAAAGACAATGAGTTTAACA+AGG | - | chr3.1:33889114-33889133 | MS.gene69564:intron | 25.0% |
| ! | TCATGAAATATTAATGGCTT+TGG | + | chr3.1:33888759-33888778 | None:intergenic | 25.0% |
| ! | TGACTTATAACTAGAAAACT+GGG | + | chr3.1:33887078-33887097 | None:intergenic | 25.0% |
| ! | TTGAGTGTACAAATATTACA+AGG | - | chr3.1:33889492-33889511 | MS.gene69564:CDS | 25.0% |
| ! | TTGTAATAACTTACAGTTAC+AGG | + | chr3.1:33887310-33887329 | None:intergenic | 25.0% |
| !! | AGTTTTACCAAAGTTTTACA+TGG | - | chr3.1:33886408-33886427 | MS.gene69564:CDS | 25.0% |
| !! | ATATGCATATGAACATTTTC+TGG | + | chr3.1:33886970-33886989 | None:intergenic | 25.0% |
| !! | ATTTTCATGAAGGAAAATAG+TGG | + | chr3.1:33887569-33887588 | None:intergenic | 25.0% |
| !! | TAATAATGGGACATAAAAGT+AGG | - | chr3.1:33887642-33887661 | MS.gene69564:intron | 25.0% |
| !! | TACATGTACTATTTTATCGT+TGG | + | chr3.1:33887926-33887945 | None:intergenic | 25.0% |
| !! | TTTTTAAACCCACAAGTATA+AGG | - | chr3.1:33888413-33888432 | MS.gene69564:intron | 25.0% |
| !!! | GTTGATTTTGATTTTCATGA+AGG | + | chr3.1:33887579-33887598 | None:intergenic | 25.0% |
| !!! | TGGATTATTTTGGATATAGA+AGG | - | chr3.1:33886638-33886657 | MS.gene69564:CDS | 25.0% |
| !!! | TTAAAAGTATCTTTGGATAG+AGG | - | chr3.1:33886781-33886800 | MS.gene69564:CDS | 25.0% |
| !!! | TTATTTTTCTTGATAGGTCT+AGG | - | chr3.1:33886856-33886875 | MS.gene69564:CDS | 25.0% |
| !!! | TTCTATTTTTGATGAATCCA+TGG | - | chr3.1:33889351-33889370 | MS.gene69564:CDS | 25.0% |
| AAACTCATGCTAAGAAAAAC+AGG | + | chr3.1:33889032-33889051 | None:intergenic | 30.0% | |
| AAATATTAAAATGTCCCCAG+CGG | + | chr3.1:33887115-33887134 | None:intergenic | 30.0% | |
| AAATGAAAACGTACAGCTTT+GGG | + | chr3.1:33888513-33888532 | None:intergenic | 30.0% | |
| AAGATAGAGAAACAATGCAA+AGG | - | chr3.1:33889147-33889166 | MS.gene69564:intron | 30.0% | |
| AGATTCTCCATGTAAAACTT+TGG | + | chr3.1:33886418-33886437 | None:intergenic | 30.0% | |
| AGTGTACAAATATTACAAGG+AGG | - | chr3.1:33889495-33889514 | MS.gene69564:CDS | 30.0% | |
| ATAATGATAGGAAGCTTATG+TGG | - | chr3.1:33888686-33888705 | MS.gene69564:intron | 30.0% | |
| ATTGTCAATGGAATTGCAAT+TGG | + | chr3.1:33888840-33888859 | None:intergenic | 30.0% | |
| CTGACTTATAACTAGAAAAC+TGG | + | chr3.1:33887079-33887098 | None:intergenic | 30.0% | |
| GAGTTAGATGGGAATTAATA+TGG | + | chr3.1:33888654-33888673 | None:intergenic | 30.0% | |
| GCAGTAGTAAAACTACAATT+GGG | + | chr3.1:33887056-33887075 | None:intergenic | 30.0% | |
| GGCTCAAATCAAATGTTTAT+AGG | + | chr3.1:33886949-33886968 | None:intergenic | 30.0% | |
| GTGTACAAATATTACAAGGA+GGG | - | chr3.1:33889496-33889515 | MS.gene69564:CDS | 30.0% | |
| TAAATGAAAACGTACAGCTT+TGG | + | chr3.1:33888514-33888533 | None:intergenic | 30.0% | |
| TAATAACTTACAGTTACAGG+TGG | + | chr3.1:33887307-33887326 | None:intergenic | 30.0% | |
| TACTCTATGTTTGTACACAT+AGG | - | chr3.1:33888994-33889013 | MS.gene69564:intron | 30.0% | |
| TATGTACAAAGGACTAAATG+TGG | - | chr3.1:33888256-33888275 | MS.gene69564:intron | 30.0% | |
| TCAATATTATAACTAGGCCA+TGG | + | chr3.1:33889371-33889390 | None:intergenic | 30.0% | |
| TCTATGCATATCCAATGAAT+CGG | + | chr3.1:33887508-33887527 | None:intergenic | 30.0% | |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr3.1:33887861-33887880 | None:intergenic | 30.0% | |
| TGTTACACTTAAAACAAGGT+AGG | + | chr3.1:33887837-33887856 | None:intergenic | 30.0% | |
| TTCATATGCATATCATGAGA+TGG | - | chr3.1:33886977-33886996 | MS.gene69564:intron | 30.0% | |
| TTGTCAATACAAGTGAAACT+AGG | + | chr3.1:33887344-33887363 | None:intergenic | 30.0% | |
| TTTCATATCATGATGACTCA+TGG | - | chr3.1:33887176-33887195 | MS.gene69564:intron | 30.0% | |
| TTTGAGAAAACCTTTGACTA+CGG | - | chr3.1:33889049-33889068 | MS.gene69564:intron | 30.0% | |
| TTTGGATAGAGGAAAATGAA+AGG | - | chr3.1:33886792-33886811 | MS.gene69564:CDS | 30.0% | |
| ! | ACTTGTATTGACAAGTTTAG+TGG | - | chr3.1:33887350-33887369 | MS.gene69564:intron | 30.0% |
| ! | GATGAATTGATGACACTATA+TGG | + | chr3.1:33887781-33887800 | None:intergenic | 30.0% |
| ! | GCTAATGTGAGTATGTTTTA+TGG | - | chr3.1:33889293-33889312 | MS.gene69564:CDS | 30.0% |
| !! | AGCTAGTGGATTAAAATGTT+TGG | - | chr3.1:33889322-33889341 | MS.gene69564:CDS | 30.0% |
| !! | TATTTTTGCTTGCATCATCT+GGG | + | chr3.1:33888439-33888458 | None:intergenic | 30.0% |
| !!! | ATACCCCACTTTTTTTTTTG+TGG | + | chr3.1:33888356-33888375 | None:intergenic | 30.0% |
| !!! | GTTTTCTAGTTATAAGTCAG+CGG | - | chr3.1:33887079-33887098 | MS.gene69564:intron | 30.0% |
| !!! | TTATTTTTGCTTGCATCATC+TGG | + | chr3.1:33888440-33888459 | None:intergenic | 30.0% |
| AAAAGTGATCCAAGCGAAAT+AGG | - | chr3.1:33888218-33888237 | MS.gene69564:intron | 35.0% | |
| AAAGTGATCCAAGCGAAATA+GGG | - | chr3.1:33888219-33888238 | MS.gene69564:intron | 35.0% | |
| ACACCTCACTATTTGTATAG+TGG | - | chr3.1:33887740-33887759 | MS.gene69564:intron | 35.0% | |
| ACGGCCACAAAAAAAAAAGT+GGG | - | chr3.1:33888349-33888368 | MS.gene69564:intron | 35.0% | |
| ATATCACCTCACTCATGTAT+GGG | - | chr3.1:33887608-33887627 | MS.gene69564:intron | 35.0% | |
| ATGCAAAGGTTGTTAAGTGA+AGG | - | chr3.1:33889161-33889180 | MS.gene69564:intron | 35.0% | |
| ATGCCACTATACAAATAGTG+AGG | + | chr3.1:33887746-33887765 | None:intergenic | 35.0% | |
| CATATCCAATGAATCGGTTA+AGG | + | chr3.1:33887502-33887521 | None:intergenic | 35.0% | |
| CATGGAGAATCTTAACCTTA+AGG | - | chr3.1:33886426-33886445 | MS.gene69564:CDS | 35.0% | |
| CTATAAGTTACCGTAGTCAA+AGG | + | chr3.1:33889062-33889081 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | + | chr3.1:33887860-33887879 | None:intergenic | 35.0% | |
| CTTGCATTAGTAGCATATAG+TGG | - | chr3.1:33888903-33888922 | MS.gene69564:intron | 35.0% | |
| GAGGAAAATGAAAGGAAGTT+AGG | - | chr3.1:33886800-33886819 | MS.gene69564:CDS | 35.0% | |
| GGCAGTAGTAAAACTACAAT+TGG | + | chr3.1:33887057-33887076 | None:intergenic | 35.0% | |
| GGTAAGAAGTTGAGATGTAA+GGG | + | chr3.1:33887248-33887267 | None:intergenic | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | + | chr3.1:33887862-33887881 | None:intergenic | 35.0% | |
| TAGTAATGCTTGCAACATCT+TGG | + | chr3.1:33887952-33887971 | None:intergenic | 35.0% | |
| TTACAGTTACAGGTGGTTAA+GGG | + | chr3.1:33887300-33887319 | None:intergenic | 35.0% | |
| ! | AGTCATGAGAATGACTTTTC+TGG | - | chr3.1:33887680-33887699 | MS.gene69564:intron | 35.0% |
| ! | TACTTTTATGGGAGCTTCTA+TGG | + | chr3.1:33888078-33888097 | None:intergenic | 35.0% |
| ! | TATAGTGGAAGGGTTTCTTA+AGG | - | chr3.1:33886507-33886526 | MS.gene69564:CDS | 35.0% |
| ! | TTTAAGTTTGTCGGTACACA+AGG | + | chr3.1:33887428-33887447 | None:intergenic | 35.0% |
| ! | TTTGATTTCTAGGCATGGTT+TGG | - | chr3.1:33886594-33886613 | MS.gene69564:CDS | 35.0% |
| ! | TTTTATGGTACAACAGCTAG+TGG | - | chr3.1:33889308-33889327 | MS.gene69564:CDS | 35.0% |
| !! | AACATGTAGAGAGTTGATGA+AGG | + | chr3.1:33888807-33888826 | None:intergenic | 35.0% |
| !! | ACTTCACTGGTTTGATTTCT+AGG | - | chr3.1:33886584-33886603 | MS.gene69564:CDS | 35.0% |
| !! | AGTGCTCTCATGGATTATTT+TGG | - | chr3.1:33886628-33886647 | MS.gene69564:CDS | 35.0% |
| !! | GTTTTCCTTAACCGATTCAT+TGG | - | chr3.1:33887494-33887513 | MS.gene69564:intron | 35.0% |
| !!! | AGTCAGGAAACTGACTTTTT+TGG | + | chr3.1:33888052-33888071 | None:intergenic | 35.0% |
| AAAAGAGTTGGGTGATGCTT+TGG | - | chr3.1:33889466-33889485 | MS.gene69564:CDS | 40.0% | |
| AAAGAGTTGGGTGATGCTTT+GGG | - | chr3.1:33889467-33889486 | MS.gene69564:CDS | 40.0% | |
| AACCCTTCCACTATAACTCT+AGG | + | chr3.1:33886502-33886521 | None:intergenic | 40.0% | |
| ACAAAACCTCACAAGCCTTA+AGG | + | chr3.1:33886444-33886463 | None:intergenic | 40.0% | |
| ACAGGTGGTTAAGGGTAAAA+TGG | + | chr3.1:33887292-33887311 | None:intergenic | 40.0% | |
| ACATTAGCATTCATAGCCAC+AGG | + | chr3.1:33889281-33889300 | None:intergenic | 40.0% | |
| AGAAGGCCTGATTTAGGAAT+TGG | - | chr3.1:33886655-33886674 | MS.gene69564:CDS | 40.0% | |
| ATGATGTTAGCTGGGAATGA+AGG | - | chr3.1:33889527-33889546 | MS.gene69564:CDS | 40.0% | |
| CAACTCTCTACATGTTCATG+TGG | - | chr3.1:33888811-33888830 | MS.gene69564:intron | 40.0% | |
| CACGGCCACAAAAAAAAAAG+TGG | - | chr3.1:33888348-33888367 | MS.gene69564:intron | 40.0% | |
| CAGGTGGTTAAGGGTAAAAT+GGG | + | chr3.1:33887291-33887310 | None:intergenic | 40.0% | |
| CATATCACCTCACTCATGTA+TGG | - | chr3.1:33887607-33887626 | MS.gene69564:intron | 40.0% | |
| CGGCCACAAAAAAAAAAGTG+GGG | - | chr3.1:33888350-33888369 | MS.gene69564:intron | 40.0% | |
| CTTACAGTTACAGGTGGTTA+AGG | + | chr3.1:33887301-33887320 | None:intergenic | 40.0% | |
| GACAAATTCCCTATTTCGCT+TGG | + | chr3.1:33888230-33888249 | None:intergenic | 40.0% | |
| GATTTAGTTGTGTGTCCTGA+AGG | - | chr3.1:33889185-33889204 | MS.gene69564:intron | 40.0% | |
| GGATATAGAAGGCCTGATTT+AGG | - | chr3.1:33886649-33886668 | MS.gene69564:CDS | 40.0% | |
| GGGTAAGAAGTTGAGATGTA+AGG | + | chr3.1:33887249-33887268 | None:intergenic | 40.0% | |
| GTACAAAGGACTAAATGTGG+AGG | - | chr3.1:33888259-33888278 | MS.gene69564:intron | 40.0% | |
| GTGCTTCCAATTCCTAAATC+AGG | + | chr3.1:33886664-33886683 | None:intergenic | 40.0% | |
| TAACTACCCATACATGAGTG+AGG | + | chr3.1:33887617-33887636 | None:intergenic | 40.0% | |
| TCCAAGTTCAATCATGCCAA+GGG | - | chr3.1:33888725-33888744 | MS.gene69564:intron | 40.0% | |
| TCCTGAAGGAACAACTTGTA+GGG | - | chr3.1:33889199-33889218 | MS.gene69564:intron | 40.0% | |
| TCTTAACCTTAAGGCTTGTG+AGG | - | chr3.1:33886435-33886454 | MS.gene69564:CDS | 40.0% | |
| TGATAAGGATAGTGCTCTCA+TGG | - | chr3.1:33886618-33886637 | MS.gene69564:CDS | 40.0% | |
| TTCTATGAGTTAAGCTCACG+AGG | + | chr3.1:33888292-33888311 | None:intergenic | 40.0% | |
| TTGTGTGCCTAGAGTTATAG+TGG | - | chr3.1:33886492-33886511 | MS.gene69564:CDS | 40.0% | |
| ! | GGGGTGTTACACTTAAAACA+AGG | + | chr3.1:33887841-33887860 | None:intergenic | 40.0% |
| ! | TGCCTAGAGTTATAGTGGAA+GGG | - | chr3.1:33886497-33886516 | MS.gene69564:CDS | 40.0% |
| !! | ACTGGTTTGATTTCTAGGCA+TGG | - | chr3.1:33886589-33886608 | MS.gene69564:CDS | 40.0% |
| !! | AGAGAGTTGATGAAGGTGTA+GGG | + | chr3.1:33888800-33888819 | None:intergenic | 40.0% |
| !! | GTGAGGTTTTGTCTTCAGTA+GGG | - | chr3.1:33886452-33886471 | MS.gene69564:CDS | 40.0% |
| !! | TAGAGAGTTGATGAAGGTGT+AGG | + | chr3.1:33888801-33888820 | None:intergenic | 40.0% |
| !! | TAGGCATGGTTTGGTTGATA+AGG | - | chr3.1:33886603-33886622 | MS.gene69564:CDS | 40.0% |
| !! | TGGAAAGTCTCCTTTTGAAG+TGG | - | chr3.1:33889430-33889449 | MS.gene69564:CDS | 40.0% |
| !! | TGTGAGGTTTTGTCTTCAGT+AGG | - | chr3.1:33886451-33886470 | MS.gene69564:CDS | 40.0% |
| !!! | CACTTTTTTTTTTGTGGCCG+TGG | + | chr3.1:33888350-33888369 | None:intergenic | 40.0% |
| AAAGAACTCACTTGTGCTGG+TGG | - | chr3.1:33889410-33889429 | MS.gene69564:CDS | 45.0% | |
| AAGGTCCAGAGTACAAACCA+CGG | - | chr3.1:33888330-33888349 | MS.gene69564:intron | 45.0% | |
| CCAAAAGAACTCACTTGTGC+TGG | - | chr3.1:33889407-33889426 | MS.gene69564:CDS | 45.0% | |
| GCTACAGAGTTACACACTGT+TGG | - | chr3.1:33886556-33886575 | MS.gene69564:CDS | 45.0% | |
| GGGTAAAATGGGAAATCCGT+TGG | + | chr3.1:33887280-33887299 | None:intergenic | 45.0% | |
| GTCCAAGTTCAATCATGCCA+AGG | - | chr3.1:33888724-33888743 | MS.gene69564:intron | 45.0% | |
| GTCCTGAAGGAACAACTTGT+AGG | - | chr3.1:33889198-33889217 | MS.gene69564:intron | 45.0% | |
| GTCGGTACACAAGGCTAATT+TGG | + | chr3.1:33887419-33887438 | None:intergenic | 45.0% | |
| TCCCTACAAGTTGTTCCTTC+AGG | + | chr3.1:33889203-33889222 | None:intergenic | 45.0% | |
| TCCCTTGGCATGATTGAACT+TGG | + | chr3.1:33888729-33888748 | None:intergenic | 45.0% | |
| TGCTGATGAGATTGTTCCTG+TGG | - | chr3.1:33889262-33889281 | MS.gene69564:CDS | 45.0% | |
| ! | ACTGTTGGATGCTACTTCAC+TGG | - | chr3.1:33886571-33886590 | MS.gene69564:CDS | 45.0% |
| ! | CATCTGGGCCTTATACTTGT+GGG | + | chr3.1:33888424-33888443 | None:intergenic | 45.0% |
| ! | CCAGCACAAGTGAGTTCTTT+TGG | + | chr3.1:33889410-33889429 | None:intergenic | 45.0% |
| ! | GTGCCTAGAGTTATAGTGGA+AGG | - | chr3.1:33886496-33886515 | MS.gene69564:CDS | 45.0% |
| ! | TCATCTGGGCCTTATACTTG+TGG | + | chr3.1:33888425-33888444 | None:intergenic | 45.0% |
| !! | AGCGGTTTTTAACTACCGCT+GGG | - | chr3.1:33887097-33887116 | MS.gene69564:intron | 45.0% |
| !!! | GGCTTTGGATACTTTTCCCT+TGG | + | chr3.1:33888744-33888763 | None:intergenic | 45.0% |
| TCTTACCCCCACAAGACCAA+CGG | - | chr3.1:33887261-33887280 | MS.gene69564:intron | 50.0% | |
| !! | CAGCGGTTTTTAACTACCGC+TGG | - | chr3.1:33887096-33887115 | MS.gene69564:intron | 50.0% |
| !! | GAAATCCGTTGGTCTTGTGG+GGG | + | chr3.1:33887269-33887288 | None:intergenic | 50.0% |
| !! | GCGGTTTTTAACTACCGCTG+GGG | - | chr3.1:33887098-33887117 | MS.gene69564:intron | 50.0% |
| !! | GGAAATCCGTTGGTCTTGTG+GGG | + | chr3.1:33887270-33887289 | None:intergenic | 50.0% |
| !! | GGGAAATCCGTTGGTCTTGT+GGG | + | chr3.1:33887271-33887290 | None:intergenic | 50.0% |
| !! | TGGGAAATCCGTTGGTCTTG+TGG | + | chr3.1:33887272-33887291 | None:intergenic | 50.0% |
| GGAGCTTCTATGGTGCAGTC+AGG | + | chr3.1:33888068-33888087 | None:intergenic | 55.0% | |
| ! | TGTGGCCGTGGTTTGTACTC+TGG | + | chr3.1:33888338-33888357 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 33886388 | 33889571 | 33886388 | ID=MS.gene69564 |
| chr3.1 | mRNA | 33886388 | 33889571 | 33886388 | ID=MS.gene69564.t1;Parent=MS.gene69564 |
| chr3.1 | exon | 33889228 | 33889571 | 33889228 | ID=MS.gene69564.t1.exon1;Parent=MS.gene69564.t1 |
| chr3.1 | CDS | 33889228 | 33889571 | 33889228 | ID=cds.MS.gene69564.t1;Parent=MS.gene69564.t1 |
| chr3.1 | exon | 33886388 | 33886943 | 33886388 | ID=MS.gene69564.t1.exon2;Parent=MS.gene69564.t1 |
| chr3.1 | CDS | 33886388 | 33886943 | 33886388 | ID=cds.MS.gene69564.t1;Parent=MS.gene69564.t1 |
| Gene Sequence |
| Protein sequence |
