Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69759.t1 | XP_013461140.1 | 96.6 | 238 | 8 | 0 | 1 | 238 | 1 | 238 | 2.40E-129 | 471.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69759.t1 | Q2HIW2 | 72.0 | 236 | 60 | 1 | 9 | 238 | 10 | 245 | 8.6e-96 | 351.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69759.t1 | A0A072UZD8 | 96.6 | 238 | 8 | 0 | 1 | 238 | 1 | 238 | 1.7e-129 | 471.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene69759 | 0.812042 | 5.17E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene69759 | 0.815483 | 9.03E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene69759 | 0.801815 | 7.53E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene69759 | 0.812777 | 3.57E-51 | -1.69E-46 |
| MS.gene053995 | MS.gene69759 | 0.811334 | 7.37E-51 | -1.69E-46 |
| MS.gene05548 | MS.gene69759 | 0.80467 | 1.93E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene69759 | 0.810853 | 9.37E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene69759 | 0.813649 | 2.30E-51 | -1.69E-46 |
| MS.gene057079 | MS.gene69759 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene69759 | 0.812785 | 3.56E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene69759 | -0.820653 | 6.12E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69759.t1 | MTR_3g081290 | 96.639 | 238 | 8 | 0 | 1 | 238 | 1 | 238 | 3.94e-174 | 478 |
| MS.gene69759.t1 | MTR_3g105860 | 43.299 | 97 | 55 | 0 | 35 | 131 | 3 | 99 | 5.53e-23 | 89.7 |
| MS.gene69759.t1 | MTR_6g027160 | 40.206 | 97 | 58 | 0 | 35 | 131 | 78 | 174 | 7.39e-20 | 84.3 |
| MS.gene69759.t1 | MTR_1g100727 | 38.542 | 96 | 59 | 0 | 35 | 130 | 74 | 169 | 4.99e-17 | 77.4 |
| MS.gene69759.t1 | MTR_6g054890 | 32.857 | 140 | 86 | 3 | 36 | 171 | 74 | 209 | 2.29e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69759.t1 | AT4G14965 | 72.034 | 236 | 60 | 1 | 9 | 238 | 10 | 245 | 2.54e-126 | 358 |
| MS.gene69759.t1 | AT4G14965 | 67.826 | 115 | 31 | 1 | 9 | 117 | 10 | 124 | 2.44e-48 | 158 |
| MS.gene69759.t1 | AT2G24940 | 45.361 | 97 | 53 | 0 | 35 | 131 | 3 | 99 | 1.14e-22 | 89.0 |
| MS.gene69759.t1 | AT3G48890 | 39.583 | 96 | 58 | 0 | 35 | 130 | 71 | 166 | 8.19e-19 | 82.4 |
| MS.gene69759.t1 | AT5G52240 | 39.583 | 96 | 58 | 0 | 35 | 130 | 75 | 170 | 4.43e-18 | 79.3 |
| MS.gene69759.t1 | AT5G52240 | 39.583 | 96 | 58 | 0 | 35 | 130 | 75 | 170 | 6.84e-18 | 79.7 |
Find 68 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCCTTATAGGAATTCT+TGG | 0.265933 | 3.4:-77309382 | MS.gene69759:CDS |
| GCTTCTCGCGCTTTCTTCTC+TGG | 0.283915 | 3.4:-77308677 | MS.gene69759:CDS |
| CCAGGGTTGCCAATCCTTAT+AGG | 0.305920 | 3.4:-77309391 | MS.gene69759:CDS |
| ACCAAGGGAAAATCACATTA+TGG | 0.338044 | 3.4:-77308855 | MS.gene69759:CDS |
| AACCTCAATGCAGTTCAAAA+TGG | 0.344961 | 3.4:-77306768 | MS.gene69759:CDS |
| AAAAGAGCAAAACCGGTAAT+AGG | 0.364781 | 3.4:+77309684 | None:intergenic |
| CTAGCAACTTCTCCTATTAC+CGG | 0.366163 | 3.4:-77309696 | MS.gene69759:CDS |
| GGAGGTTATCATCACTTTGC+TGG | 0.376414 | 3.4:-77308825 | MS.gene69759:CDS |
| TTGTTCAATGGAACTGATCC+AGG | 0.379913 | 3.4:-77309409 | MS.gene69759:CDS |
| TGCTTTGAAGAGTCTCAGTT+AGG | 0.386400 | 3.4:-77306443 | MS.gene69759:CDS |
| GTTAGGGCAACCTGGGTTAG+AGG | 0.389138 | 3.4:-77306426 | MS.gene69759:CDS |
| CCCACCCAAGAATTCCTATA+AGG | 0.391806 | 3.4:+77309377 | None:intergenic |
| ACAACGCTTACTCATCTTCC+CGG | 0.429683 | 3.4:+77306469 | None:intergenic |
| CAATCCTTATAGGAATTCTT+GGG | 0.434357 | 3.4:-77309381 | MS.gene69759:intron |
| ATCCTACAAAATATTTGAAA+GGG | 0.443636 | 3.4:-77306855 | MS.gene69759:CDS |
| GAAGAGCTTGCATTGTTCAA+TGG | 0.446040 | 3.4:-77309421 | MS.gene69759:CDS |
| ATACCTCACCGCCCTCATCT+TGG | 0.447566 | 3.4:+77306743 | None:intergenic |
| GAGTCTCAGTTAGGGCAACC+TGG | 0.454818 | 3.4:-77306434 | MS.gene69759:CDS |
| TTCTTCTCTGGAAATTTCAC+AGG | 0.459540 | 3.4:-77308665 | MS.gene69759:intron |
| AAGGACGAAAAGAGCAAAAC+CGG | 0.461374 | 3.4:+77309677 | None:intergenic |
| CCACTAGAAATTGCTTTGAC+CGG | 0.469483 | 3.4:-77306488 | MS.gene69759:CDS |
| CCTATAAGGATTGGCAACCC+TGG | 0.496548 | 3.4:+77309391 | None:intergenic |
| AATCCTACAAAATATTTGAA+AGG | 0.498002 | 3.4:-77306856 | MS.gene69759:CDS |
| AGGCCTGTTGGCAAGTTAGT+TGG | 0.503207 | 3.4:-77306901 | MS.gene69759:CDS |
| CCTGTGAAGTGATGGAAAAT+CGG | 0.503383 | 3.4:+77309637 | None:intergenic |
| CCAAGAATTCCTATAAGGAT+TGG | 0.505658 | 3.4:+77309382 | None:intergenic |
| CGACCAACTAACTTGCCAAC+AGG | 0.510685 | 3.4:+77306898 | None:intergenic |
| GGAGAAGAAGAGCAAGGAAA+AGG | 0.512294 | 3.4:+77309658 | None:intergenic |
| AAGTGATGATAACCTCCTCC+TGG | 0.519496 | 3.4:+77308831 | None:intergenic |
| CACTAGAAATTGCTTTGACC+GGG | 0.524553 | 3.4:-77306487 | MS.gene69759:CDS |
| GCTTTGAAGAGTCTCAGTTA+GGG | 0.527825 | 3.4:-77306442 | MS.gene69759:CDS |
| CTTTACTTATGTAGGCCTGT+TGG | 0.531888 | 3.4:-77306913 | MS.gene69759:intron |
| GGAAAATCACATTATGGTCC+AGG | 0.535845 | 3.4:-77308849 | MS.gene69759:CDS |
| TTCAAAATGGAGCCAAGATG+AGG | 0.538293 | 3.4:-77306755 | MS.gene69759:CDS |
| GATCAGGTATGGTGTGATGT+TGG | 0.545254 | 3.4:-77306533 | MS.gene69759:intron |
| TCACATTATGGTCCAGGAGG+AGG | 0.548964 | 3.4:-77308843 | MS.gene69759:CDS |
| TTTGAAAGGGGTCGAAGCTA+AGG | 0.554491 | 3.4:-77306842 | MS.gene69759:CDS |
| GTTATCATCACTTTGCTGGA+AGG | 0.556971 | 3.4:-77308821 | MS.gene69759:intron |
| TGATGTTGGCTACCCTAGGT+TGG | 0.557940 | 3.4:-77306519 | MS.gene69759:CDS |
| AGTGGTCTCTTAACCAACCT+AGG | 0.563498 | 3.4:+77306506 | None:intergenic |
| AAACTTTGCATCTGTTAGCA+TGG | 0.565894 | 3.4:+77306384 | None:intergenic |
| AAAAGTGACCTGTGAAGTGA+TGG | 0.571043 | 3.4:+77309629 | None:intergenic |
| CAAGAGTGTAGTTGACTGGA+GGG | 0.581429 | 3.4:-77307574 | MS.gene69759:CDS |
| GGTGTGATGTTGGCTACCCT+AGG | 0.583244 | 3.4:-77306523 | MS.gene69759:CDS |
| GTCTGTGTTTGATGTAACCA+AGG | 0.583750 | 3.4:-77308871 | MS.gene69759:CDS |
| AGTCTCAGTTAGGGCAACCT+GGG | 0.583949 | 3.4:-77306433 | MS.gene69759:CDS |
| AGGTCAAGAGTGTAGTTGAC+TGG | 0.590092 | 3.4:-77307578 | MS.gene69759:CDS |
| CCGGTCAAAGCAATTTCTAG+TGG | 0.597751 | 3.4:+77306488 | None:intergenic |
| CCTGGGTTAGAGGTATATGA+AGG | 0.601402 | 3.4:-77306416 | MS.gene69759:CDS |
| TCAAAATGGAGCCAAGATGA+GGG | 0.601857 | 3.4:-77306754 | MS.gene69759:CDS |
| GTGGTCTCTTAACCAACCTA+GGG | 0.601995 | 3.4:+77306507 | None:intergenic |
| GTCGAAGCTAAGGCGGCAAG+AGG | 0.606309 | 3.4:-77306832 | MS.gene69759:CDS |
| TCCTACAAAATATTTGAAAG+GGG | 0.614400 | 3.4:-77306854 | MS.gene69759:CDS |
| AGAAAAGCAGAAGATTGAAG+AGG | 0.616982 | 3.4:-77306797 | MS.gene69759:CDS |
| CCTTCATATACCTCTAACCC+AGG | 0.622425 | 3.4:+77306416 | None:intergenic |
| TCTGTGTTTGATGTAACCAA+GGG | 0.623353 | 3.4:-77308870 | MS.gene69759:CDS |
| TCAAGAGTGTAGTTGACTGG+AGG | 0.626751 | 3.4:-77307575 | MS.gene69759:CDS |
| GTCGATACTACGATAGCCGA+GGG | 0.630099 | 3.4:-77306879 | MS.gene69759:CDS |
| TGTTCAATGGAACTGATCCA+GGG | 0.648587 | 3.4:-77309408 | MS.gene69759:CDS |
| GGTCGATACTACGATAGCCG+AGG | 0.654868 | 3.4:-77306880 | MS.gene69759:CDS |
| GAAAGGGGTCGAAGCTAAGG+CGG | 0.668082 | 3.4:-77306839 | MS.gene69759:CDS |
| AAGAGTGTAGTTGACTGGAG+GGG | 0.668565 | 3.4:-77307573 | MS.gene69759:CDS |
| GAGCCAAGATGAGGGCGGTG+AGG | 0.675361 | 3.4:-77306746 | MS.gene69759:intron |
| AAAATCGGAGAAGAAGAGCA+AGG | 0.676332 | 3.4:+77309652 | None:intergenic |
| GGACTCACTGACTCATTGCG+CGG | 0.685717 | 3.4:-77307747 | MS.gene69759:CDS |
| AAATCACATTATGGTCCAGG+AGG | 0.693984 | 3.4:-77308846 | MS.gene69759:CDS |
| AAATGGAGCCAAGATGAGGG+CGG | 0.711633 | 3.4:-77306751 | MS.gene69759:CDS |
| GCGCGGTCTGTCTAGCACTG+AGG | 0.718490 | 3.4:-77307730 | MS.gene69759:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATAGTTATAAATTCA+AGG | + | chr3.4:77308427-77308446 | None:intergenic | 10.0% |
| !! | TTAGCATAAAATTTAAATTA+CGG | - | chr3.4:77306515-77306534 | MS.gene69759:CDS | 10.0% |
| !!! | AATGCTTTAAAATATAAAAA+CGG | - | chr3.4:77308079-77308098 | MS.gene69759:intron | 10.0% |
| !! | TAGCATAAAATTTAAATTAC+GGG | - | chr3.4:77306516-77306535 | MS.gene69759:CDS | 15.0% |
| !!! | AATTTAAAACATTAAGATGA+TGG | + | chr3.4:77307738-77307757 | None:intergenic | 15.0% |
| !!! | ATCTTTGATTGTTTTTTTAT+AGG | - | chr3.4:77307200-77307219 | MS.gene69759:intron | 15.0% |
| !!! | ATGCTTTAAAATATAAAAAC+GGG | - | chr3.4:77308080-77308099 | MS.gene69759:intron | 15.0% |
| !!! | ATTTAAAACATTAAGATGAT+GGG | + | chr3.4:77307737-77307756 | None:intergenic | 15.0% |
| !! | AATCCTACAAAATATTTGAA+AGG | - | chr3.4:77309237-77309256 | MS.gene69759:intron | 20.0% |
| !! | ACTAAATGAAAGCAATATAT+GGG | - | chr3.4:77307809-77307828 | MS.gene69759:intron | 20.0% |
| !! | AGCATAAAATTTAAATTACG+GGG | - | chr3.4:77306517-77306536 | MS.gene69759:CDS | 20.0% |
| !! | AGTACATATTATATTGTTCA+AGG | + | chr3.4:77308286-77308305 | None:intergenic | 20.0% |
| !! | ATAAAATATGACGACAATTT+CGG | + | chr3.4:77309482-77309501 | None:intergenic | 20.0% |
| !! | ATCCTACAAAATATTTGAAA+GGG | - | chr3.4:77309238-77309257 | MS.gene69759:intron | 20.0% |
| !! | TAGTTGAATTTCACTTTAAA+TGG | - | chr3.4:77307456-77307475 | MS.gene69759:intron | 20.0% |
| !! | TGAAATGTTATAATATACCA+TGG | - | chr3.4:77308209-77308228 | MS.gene69759:intron | 20.0% |
| !! | TGATATACAAAAACAACTAA+AGG | + | chr3.4:77307948-77307967 | None:intergenic | 20.0% |
| !! | TGCATATAAGTAATTGTTAT+CGG | + | chr3.4:77309458-77309477 | None:intergenic | 20.0% |
| !! | TTAATTAACCTGAATTAATC+TGG | - | chr3.4:77308453-77308472 | MS.gene69759:intron | 20.0% |
| !!! | AGAATTATTTTCTTGGAATT+TGG | + | chr3.4:77307581-77307600 | None:intergenic | 20.0% |
| !!! | ATTAGTCAGAATTATTTTCT+TGG | + | chr3.4:77307588-77307607 | None:intergenic | 20.0% |
| !!! | GAATTATTTTCTTGGAATTT+GGG | + | chr3.4:77307580-77307599 | None:intergenic | 20.0% |
| !!! | GGTTAATCTAATCTTATTTT+TGG | + | chr3.4:77308130-77308149 | None:intergenic | 20.0% |
| !!! | TCAATTCAAGTTGAAAATTA+TGG | + | chr3.4:77307062-77307081 | None:intergenic | 20.0% |
| !!! | TTACATTTTAACAACCTTAA+AGG | - | chr3.4:77307983-77308002 | MS.gene69759:intron | 20.0% |
| ! | AAGAAAAACATGAGTTCAAA+TGG | + | chr3.4:77307370-77307389 | None:intergenic | 25.0% |
| ! | AGAAAAACATGAGTTCAAAT+GGG | + | chr3.4:77307369-77307388 | None:intergenic | 25.0% |
| ! | AGAAATTGAGAACTCTAATT+AGG | + | chr3.4:77307871-77307890 | None:intergenic | 25.0% |
| ! | ATAACTAATGTAACGTAAGA+AGG | + | chr3.4:77308662-77308681 | None:intergenic | 25.0% |
| ! | ATACAAACTGAACAAAAACA+TGG | + | chr3.4:77307326-77307345 | None:intergenic | 25.0% |
| ! | ATCGTAGAAACTATATGATT+AGG | - | chr3.4:77308837-77308856 | MS.gene69759:CDS | 25.0% |
| ! | ATGATTACAAATTAACACTC+TGG | + | chr3.4:77309053-77309072 | None:intergenic | 25.0% |
| ! | ATGCATGCTAATAGATTATT+AGG | - | chr3.4:77309094-77309113 | MS.gene69759:intron | 25.0% |
| ! | GACTAAATGAAAGCAATATA+TGG | - | chr3.4:77307808-77307827 | MS.gene69759:intron | 25.0% |
| ! | GAGAAATAGCATATGTTATT+GGG | + | chr3.4:77309435-77309454 | None:intergenic | 25.0% |
| ! | GATTCCAGAAAAATTAACAA+AGG | + | chr3.4:77307849-77307868 | None:intergenic | 25.0% |
| ! | GCATATAAGTAATTGTTATC+GGG | + | chr3.4:77309457-77309476 | None:intergenic | 25.0% |
| ! | TACAAACTGAACAAAAACAT+GGG | + | chr3.4:77307325-77307344 | None:intergenic | 25.0% |
| ! | TATCCTTACTTTACTTATGT+AGG | - | chr3.4:77309172-77309191 | MS.gene69759:intron | 25.0% |
| ! | TCAATTGACGTTGAAAATTA+TGG | - | chr3.4:77306874-77306893 | MS.gene69759:CDS | 25.0% |
| ! | TCCTACAAAATATTTGAAAG+GGG | - | chr3.4:77309239-77309258 | MS.gene69759:intron | 25.0% |
| ! | TCTCCTTAATACATAATCTA+CGG | + | chr3.4:77308888-77308907 | None:intergenic | 25.0% |
| ! | TGATGTTCTGATTTATCTAA+AGG | + | chr3.4:77308059-77308078 | None:intergenic | 25.0% |
| ! | TTACGTTACATTAGTTATGA+TGG | - | chr3.4:77308664-77308683 | MS.gene69759:intron | 25.0% |
| ! | TTCAAATGGGTAAATTTCAT+TGG | + | chr3.4:77307356-77307375 | None:intergenic | 25.0% |
| ! | TTGCAAATTTCTTAATTCGT+AGG | - | chr3.4:77307128-77307147 | MS.gene69759:intron | 25.0% |
| ! | TTTCAAAACTAGATCTATAC+AGG | + | chr3.4:77308194-77308213 | None:intergenic | 25.0% |
| !! | ACTTTATTTCTCTCTTTCTT+GGG | - | chr3.4:77306740-77306759 | MS.gene69759:intron | 25.0% |
| !! | ATTTGAACTCATGTTTTTCT+TGG | - | chr3.4:77307369-77307388 | MS.gene69759:intron | 25.0% |
| !! | ATTTTATCATCAAACCATTG+TGG | + | chr3.4:77307768-77307787 | None:intergenic | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | + | chr3.4:77308951-77308970 | None:intergenic | 25.0% |
| !! | TACTTTATTTCTCTCTTTCT+TGG | - | chr3.4:77306739-77306758 | MS.gene69759:intron | 25.0% |
| !! | TAGATAGATAGTCTGAAATA+TGG | - | chr3.4:77309021-77309040 | MS.gene69759:intron | 25.0% |
| !! | TCAAGGAATAAATTGTTTCT+AGG | + | chr3.4:77308269-77308288 | None:intergenic | 25.0% |
| !!! | AAAGTAAGGATAAGTATTGA+AGG | + | chr3.4:77309164-77309183 | None:intergenic | 25.0% |
| !!! | AAGTAAGGATAAGTATTGAA+GGG | + | chr3.4:77309163-77309182 | None:intergenic | 25.0% |
| !!! | TCTTTAGAGTGAAAATTGAA+AGG | - | chr3.4:77308162-77308181 | MS.gene69759:intron | 25.0% |
| AAAACAAAGTAGCAGATTGA+AGG | + | chr3.4:77308580-77308599 | None:intergenic | 30.0% | |
| AACCATCTACTACAAAAAGT+GGG | - | chr3.4:77307085-77307104 | MS.gene69759:intron | 30.0% | |
| AGATCTAGAGATTAATGAGT+TGG | - | chr3.4:77308980-77308999 | MS.gene69759:intron | 30.0% | |
| ATAAATGCAGATTATGACAC+AGG | - | chr3.4:77309525-77309544 | MS.gene69759:intron | 30.0% | |
| ATCCAAGTGAGTTAAAACTA+TGG | + | chr3.4:77306920-77306939 | None:intergenic | 30.0% | |
| ATTAATCACCTGCAAAAGTA+TGG | - | chr3.4:77306846-77306865 | MS.gene69759:CDS | 30.0% | |
| CAACAAAGTATAACCAATGT+AGG | + | chr3.4:77307522-77307541 | None:intergenic | 30.0% | |
| CAATCCTTATAGGAATTCTT+GGG | - | chr3.4:77306712-77306731 | MS.gene69759:intron | 30.0% | |
| CTCCTTAATACATAATCTAC+GGG | + | chr3.4:77308887-77308906 | None:intergenic | 30.0% | |
| GATTAAAGATATGCTTGCTT+TGG | - | chr3.4:77308616-77308635 | MS.gene69759:intron | 30.0% | |
| GGAGAAATAGCATATGTTAT+TGG | + | chr3.4:77309436-77309455 | None:intergenic | 30.0% | |
| GTAGAAACTATATGATTAGG+TGG | - | chr3.4:77308840-77308859 | MS.gene69759:CDS | 30.0% | |
| TAACCATCTACTACAAAAAG+TGG | - | chr3.4:77307084-77307103 | MS.gene69759:intron | 30.0% | |
| TCTATCTTCCAGATTAATTC+AGG | + | chr3.4:77308464-77308483 | None:intergenic | 30.0% | |
| TCTTCATTTGTATCCTACAT+TGG | - | chr3.4:77307506-77307525 | MS.gene69759:intron | 30.0% | |
| ! | AATATTTTGTAGGATTCCCT+CGG | + | chr3.4:77309233-77309252 | None:intergenic | 30.0% |
| ! | ACCAATTTCAATGGTTAGTT+TGG | - | chr3.4:77307011-77307030 | MS.gene69759:intron | 30.0% |
| ! | ACCCCTTTCAAATATTTTGT+AGG | + | chr3.4:77309243-77309262 | None:intergenic | 30.0% |
| ! | ACGCAGTTTAATTTAAGGTA+AGG | + | chr3.4:77308493-77308512 | None:intergenic | 30.0% |
| ! | GTGACCTTTGTTAATTTTTC+TGG | - | chr3.4:77307842-77307861 | MS.gene69759:intron | 30.0% |
| ! | TGAATTAACCATACTTTTGC+AGG | + | chr3.4:77306857-77306876 | None:intergenic | 30.0% |
| !! | AAGTTTTGGTAATAGTACCA+TGG | + | chr3.4:77308229-77308248 | None:intergenic | 30.0% |
| !! | AGAATTTTTCTAGCATGAAG+TGG | + | chr3.4:77307914-77307933 | None:intergenic | 30.0% |
| !! | CAAAAGCAAAAGTACCTTTA+AGG | + | chr3.4:77308000-77308019 | None:intergenic | 30.0% |
| !!! | AACCATAGTTTTAACTCACT+TGG | - | chr3.4:77306915-77306934 | MS.gene69759:intron | 30.0% |
| !!! | TAGTTTTAACTCACTTGGAT+TGG | - | chr3.4:77306920-77306939 | MS.gene69759:intron | 30.0% |
| !!! | TTACATGTTTTGATCAGGTA+TGG | - | chr3.4:77309549-77309568 | MS.gene69759:intron | 30.0% |
| AAAAGAGCAAAACCGGTAAT+AGG | + | chr3.4:77306412-77306431 | None:intergenic | 35.0% | |
| AAACTAGATCTATACAGGAC+AGG | + | chr3.4:77308189-77308208 | None:intergenic | 35.0% | |
| AAACTTTGCATCTGTTAGCA+TGG | + | chr3.4:77309712-77309731 | None:intergenic | 35.0% | |
| AAATAGAGGGTAGTCAAATG+AGG | - | chr3.4:77308915-77308934 | MS.gene69759:intron | 35.0% | |
| AAATTCAAGGAGAGAAGAAC+AGG | + | chr3.4:77308414-77308433 | None:intergenic | 35.0% | |
| AACCATTGAAATTGGTACCT+AGG | + | chr3.4:77307007-77307026 | None:intergenic | 35.0% | |
| AACCTCAATGCAGTTCAAAA+TGG | - | chr3.4:77309325-77309344 | MS.gene69759:intron | 35.0% | |
| AACTAGATCTATACAGGACA+GGG | + | chr3.4:77308188-77308207 | None:intergenic | 35.0% | |
| AAGGAGAGTAGATCAAATAG+AGG | - | chr3.4:77308901-77308920 | MS.gene69759:intron | 35.0% | |
| AATAGAGGGTAGTCAAATGA+GGG | - | chr3.4:77308916-77308935 | MS.gene69759:intron | 35.0% | |
| ACCAAGGGAAAATCACATTA+TGG | - | chr3.4:77307238-77307257 | MS.gene69759:intron | 35.0% | |
| AGAAAAGCAGAAGATTGAAG+AGG | - | chr3.4:77309296-77309315 | MS.gene69759:intron | 35.0% | |
| AGGAGAGTAGATCAAATAGA+GGG | - | chr3.4:77308902-77308921 | MS.gene69759:intron | 35.0% | |
| AGGCCTACATAAGTAAAGTA+AGG | + | chr3.4:77309178-77309197 | None:intergenic | 35.0% | |
| CCAAGAATTCCTATAAGGAT+TGG | + | chr3.4:77306714-77306733 | None:intergenic | 35.0% | |
| CCAATCCTTATAGGAATTCT+TGG | - | chr3.4:77306711-77306730 | MS.gene69759:intron | 35.0% | |
| CTCCTACATGATCAACAAAA+GGG | + | chr3.4:77308324-77308343 | None:intergenic | 35.0% | |
| GACCCGTAGATTATGTATTA+AGG | - | chr3.4:77308882-77308901 | MS.gene69759:intron | 35.0% | |
| GCCAAACTAACCATTGAAAT+TGG | + | chr3.4:77307015-77307034 | None:intergenic | 35.0% | |
| GTAGCTGGTGTATGAAAAAT+TGG | + | chr3.4:77306821-77306840 | None:intergenic | 35.0% | |
| GTCATAATCTGCATTTATGC+AGG | + | chr3.4:77309523-77309542 | None:intergenic | 35.0% | |
| TAATCTGCATTTATGCAGGT+AGG | + | chr3.4:77309519-77309538 | None:intergenic | 35.0% | |
| TATTTCTCTCTTTCTTGGGT+GGG | - | chr3.4:77306744-77306763 | MS.gene69759:intron | 35.0% | |
| TCTCCTACATGATCAACAAA+AGG | + | chr3.4:77308325-77308344 | None:intergenic | 35.0% | |
| TCTGTGTTTGATGTAACCAA+GGG | - | chr3.4:77307223-77307242 | MS.gene69759:intron | 35.0% | |
| TTAAATTGCTACTGCCACAA+TGG | - | chr3.4:77307751-77307770 | MS.gene69759:CDS | 35.0% | |
| TTATGAGCATAGCAGAGATA+AGG | - | chr3.4:77308723-77308742 | MS.gene69759:intron | 35.0% | |
| TTCAGACTATCTATCTAGAC+TGG | + | chr3.4:77309018-77309037 | None:intergenic | 35.0% | |
| TTTGTTGATCATGTAGGAGA+TGG | - | chr3.4:77308325-77308344 | MS.gene69759:intron | 35.0% | |
| ! | AAAGATATGCTTGCTTTGGA+AGG | - | chr3.4:77308620-77308639 | MS.gene69759:intron | 35.0% |
| ! | AACTCATGTTTTTCTTGGTG+GGG | - | chr3.4:77307374-77307393 | MS.gene69759:intron | 35.0% |
| ! | AATTGGTGACCATGAAAGAT+TGG | + | chr3.4:77306804-77306823 | None:intergenic | 35.0% |
| ! | ACCATAATGTGATTTTCCCT+TGG | + | chr3.4:77307242-77307261 | None:intergenic | 35.0% |
| ! | AGCAATAGCAGGAAAAGTTT+TGG | + | chr3.4:77308243-77308262 | None:intergenic | 35.0% |
| ! | GAACTCATGTTTTTCTTGGT+GGG | - | chr3.4:77307373-77307392 | MS.gene69759:intron | 35.0% |
| ! | TCTCAATGGAACTGATTCTT+GGG | - | chr3.4:77306775-77306794 | MS.gene69759:CDS | 35.0% |
| ! | TGAACTCATGTTTTTCTTGG+TGG | - | chr3.4:77307372-77307391 | MS.gene69759:intron | 35.0% |
| ! | TTATTTCTCTCTTTCTTGGG+TGG | - | chr3.4:77306743-77306762 | MS.gene69759:intron | 35.0% |
| ! | TTCCCTTTTGTTGATCATGT+AGG | - | chr3.4:77308319-77308338 | MS.gene69759:intron | 35.0% |
| ! | TTCTCAATGGAACTGATTCT+TGG | - | chr3.4:77306774-77306793 | MS.gene69759:CDS | 35.0% |
| ! | TTCTTCTCTGGAAATTTCAC+AGG | - | chr3.4:77307428-77307447 | MS.gene69759:intron | 35.0% |
| !!! | ACATGTCTACCTTGTTTTCA+CGG | - | chr3.4:77307644-77307663 | MS.gene69759:intron | 35.0% |
| !!! | CAGGTTTACATGTTTTGATC+AGG | - | chr3.4:77309544-77309563 | MS.gene69759:intron | 35.0% |
| AAAAGTGACCTGTGAAGTGA+TGG | + | chr3.4:77306467-77306486 | None:intergenic | 40.0% | |
| AAAATCGGAGAAGAAGAGCA+AGG | + | chr3.4:77306444-77306463 | None:intergenic | 40.0% | |
| AAATCACATTATGGTCCAGG+AGG | - | chr3.4:77307247-77307266 | MS.gene69759:intron | 40.0% | |
| AACAAAAACATGGGTGAAGC+AGG | + | chr3.4:77307316-77307335 | None:intergenic | 40.0% | |
| AAGGACGAAAAGAGCAAAAC+CGG | + | chr3.4:77306419-77306438 | None:intergenic | 40.0% | |
| ATGACGACATTAGAGAGAGT+TGG | - | chr3.4:77308792-77308811 | MS.gene69759:intron | 40.0% | |
| ATTGCAACACCGTGAAAACA+AGG | + | chr3.4:77307656-77307675 | None:intergenic | 40.0% | |
| CACTAGAAATTGCTTTGACC+GGG | - | chr3.4:77309606-77309625 | MS.gene69759:intron | 40.0% | |
| CCACTAGAAATTGCTTTGAC+CGG | - | chr3.4:77309605-77309624 | MS.gene69759:intron | 40.0% | |
| CCTTAAATTAAACTGCGTGC+AGG | - | chr3.4:77308495-77308514 | MS.gene69759:intron | 40.0% | |
| CCTTATAGGAATTCTTGGGT+GGG | - | chr3.4:77306716-77306735 | MS.gene69759:intron | 40.0% | |
| CTAGCAACTTCTCCTATTAC+CGG | - | chr3.4:77306397-77306416 | MS.gene69759:CDS | 40.0% | |
| CTCCTAGGTACCAATTTCAA+TGG | - | chr3.4:77307002-77307021 | MS.gene69759:intron | 40.0% | |
| CTTTACTTATGTAGGCCTGT+TGG | - | chr3.4:77309180-77309199 | MS.gene69759:intron | 40.0% | |
| GAAGAGCTTGCATTGTTCAA+TGG | - | chr3.4:77306672-77306691 | MS.gene69759:intron | 40.0% | |
| GAAGTGTGGTAAGACTAAAC+GGG | - | chr3.4:77308757-77308776 | MS.gene69759:intron | 40.0% | |
| GGAAAATCACATTATGGTCC+AGG | - | chr3.4:77307244-77307263 | MS.gene69759:intron | 40.0% | |
| GGTGATTAATCAAGTGTAGC+TGG | + | chr3.4:77306836-77306855 | None:intergenic | 40.0% | |
| GGTGGGTACTTTATTCTCAA+TGG | - | chr3.4:77306761-77306780 | MS.gene69759:CDS | 40.0% | |
| GTCTGTGTTTGATGTAACCA+AGG | - | chr3.4:77307222-77307241 | MS.gene69759:intron | 40.0% | |
| GTGGGGATTTCATGATTTCA+GGG | - | chr3.4:77307391-77307410 | MS.gene69759:intron | 40.0% | |
| GTTATCATCACTTTGCTGGA+AGG | - | chr3.4:77307272-77307291 | MS.gene69759:intron | 40.0% | |
| TCAAAATGGAGCCAAGATGA+GGG | - | chr3.4:77309339-77309358 | MS.gene69759:intron | 40.0% | |
| TCCTTATAGGAATTCTTGGG+TGG | - | chr3.4:77306715-77306734 | MS.gene69759:intron | 40.0% | |
| TCTACGATCTTTGCTACTGA+AGG | + | chr3.4:77308825-77308844 | None:intergenic | 40.0% | |
| TGACGACATTAGAGAGAGTT+GGG | - | chr3.4:77308793-77308812 | MS.gene69759:intron | 40.0% | |
| TGTGCTCTTCTTAAGGTCTT+AGG | - | chr3.4:77306972-77306991 | MS.gene69759:intron | 40.0% | |
| TGTTCAATGGAACTGATCCA+GGG | - | chr3.4:77306685-77306704 | MS.gene69759:intron | 40.0% | |
| TTCAAAATGGAGCCAAGATG+AGG | - | chr3.4:77309338-77309357 | MS.gene69759:intron | 40.0% | |
| TTGTTCAATGGAACTGATCC+AGG | - | chr3.4:77306684-77306703 | MS.gene69759:intron | 40.0% | |
| ! | ACTCTAAAGAAACTGCAGCT+AGG | + | chr3.4:77308152-77308171 | None:intergenic | 40.0% |
| ! | CCTGCACGCAGTTTAATTTA+AGG | + | chr3.4:77308498-77308517 | None:intergenic | 40.0% |
| ! | CCTGTGAAGTGATGGAAAAT+CGG | + | chr3.4:77306459-77306478 | None:intergenic | 40.0% |
| ! | CTCCATTTTGAACTGCATTG+AGG | + | chr3.4:77309330-77309349 | None:intergenic | 40.0% |
| ! | CTCTAAAGAAACTGCAGCTA+GGG | + | chr3.4:77308151-77308170 | None:intergenic | 40.0% |
| ! | GGAAGTGTGGTAAGACTAAA+CGG | - | chr3.4:77308756-77308775 | MS.gene69759:intron | 40.0% |
| !! | GCTTTGAAGAGTCTCAGTTA+GGG | - | chr3.4:77309651-77309670 | MS.gene69759:CDS | 40.0% |
| !! | TATGCTTGCTTTGGAAGGAT+AGG | - | chr3.4:77308625-77308644 | MS.gene69759:intron | 40.0% |
| !! | TGCTTTGAAGAGTCTCAGTT+AGG | - | chr3.4:77309650-77309669 | MS.gene69759:CDS | 40.0% |
| !! | TTAACTCACTTGGATTGGTC+AGG | - | chr3.4:77306925-77306944 | MS.gene69759:intron | 40.0% |
| !!! | CACCCACTTTTTGTAGTAGA+TGG | + | chr3.4:77307090-77307109 | None:intergenic | 40.0% |
| AAACATGGGTGAAGCAGGAA+AGG | + | chr3.4:77307311-77307330 | None:intergenic | 45.0% | |
| AACATGGGTGAAGCAGGAAA+GGG | + | chr3.4:77307310-77307329 | None:intergenic | 45.0% | |
| AAGTGATGATAACCTCCTCC+TGG | + | chr3.4:77307265-77307284 | None:intergenic | 45.0% | |
| ACAACGCTTACTCATCTTCC+CGG | + | chr3.4:77309627-77309646 | None:intergenic | 45.0% | |
| AGTGGTCTCTTAACCAACCT+AGG | + | chr3.4:77309590-77309609 | None:intergenic | 45.0% | |
| CAGAGATAAGGTAGTTGCGT+TGG | - | chr3.4:77308735-77308754 | MS.gene69759:intron | 45.0% | |
| CCCACCCAAGAATTCCTATA+AGG | + | chr3.4:77306719-77306738 | None:intergenic | 45.0% | |
| CCTTCATATACCTCTAACCC+AGG | + | chr3.4:77309680-77309699 | None:intergenic | 45.0% | |
| CTTGGACTGTGCTCTTCTTA+AGG | - | chr3.4:77306965-77306984 | MS.gene69759:intron | 45.0% | |
| GACGACATTAGAGAGAGTTG+GGG | - | chr3.4:77308794-77308813 | MS.gene69759:intron | 45.0% | |
| GATCAGGTATGGTGTGATGT+TGG | - | chr3.4:77309560-77309579 | MS.gene69759:intron | 45.0% | |
| GGAGAAGAAGAGCAAGGAAA+AGG | + | chr3.4:77306438-77306457 | None:intergenic | 45.0% | |
| GGAGGTTATCATCACTTTGC+TGG | - | chr3.4:77307268-77307287 | MS.gene69759:intron | 45.0% | |
| GGTGGGGATTTCATGATTTC+AGG | - | chr3.4:77307390-77307409 | MS.gene69759:intron | 45.0% | |
| GTCTTAGGTTCGATTCTCCT+AGG | - | chr3.4:77306987-77307006 | MS.gene69759:intron | 45.0% | |
| GTGGTAAGACTAAACGGGAT+AGG | - | chr3.4:77308762-77308781 | MS.gene69759:intron | 45.0% | |
| GTGGTCTCTTAACCAACCTA+GGG | + | chr3.4:77309589-77309608 | None:intergenic | 45.0% | |
| TTTGAAAGGGGTCGAAGCTA+AGG | - | chr3.4:77309251-77309270 | MS.gene69759:intron | 45.0% | |
| ! | AAGAGTGTAGTTGACTGGAG+GGG | - | chr3.4:77308520-77308539 | MS.gene69759:intron | 45.0% |
| ! | AGGTCAAGAGTGTAGTTGAC+TGG | - | chr3.4:77308515-77308534 | MS.gene69759:intron | 45.0% |
| ! | CAAGAGTGTAGTTGACTGGA+GGG | - | chr3.4:77308519-77308538 | MS.gene69759:intron | 45.0% |
| ! | CATAACAGTGCAAGAGCATG+TGG | + | chr3.4:77308708-77308727 | None:intergenic | 45.0% |
| ! | CCGATTTTCCATCACTTCAC+AGG | - | chr3.4:77306456-77306475 | MS.gene69759:CDS | 45.0% |
| ! | CCGGTCAAAGCAATTTCTAG+TGG | + | chr3.4:77309608-77309627 | None:intergenic | 45.0% |
| ! | CCTGGGTTAGAGGTATATGA+AGG | - | chr3.4:77309677-77309696 | MS.gene69759:CDS | 45.0% |
| ! | CTTAAGAAGAGCACAGTCCA+AGG | + | chr3.4:77306967-77306986 | None:intergenic | 45.0% |
| ! | CTTGGGTTGCCAATCTTTCA+TGG | - | chr3.4:77306792-77306811 | MS.gene69759:CDS | 45.0% |
| ! | TCAAGAGTGTAGTTGACTGG+AGG | - | chr3.4:77308518-77308537 | MS.gene69759:intron | 45.0% |
| ! | TTTCTAGGAGCAGCAATAGC+AGG | + | chr3.4:77308254-77308273 | None:intergenic | 45.0% |
| !! | AAAAATAAAATAAAAATTGT+TGG | + | chr3.4:77306495-77306514 | None:intergenic | 5.0% |
| AAATGGAGCCAAGATGAGGG+CGG | - | chr3.4:77309342-77309361 | MS.gene69759:intron | 50.0% | |
| AGGCCTGTTGGCAAGTTAGT+TGG | - | chr3.4:77309192-77309211 | MS.gene69759:intron | 50.0% | |
| AGGGTAGTCAAATGAGGGAG+AGG | - | chr3.4:77308921-77308940 | MS.gene69759:intron | 50.0% | |
| AGGTAGTTGCGTTGGAAGTG+TGG | - | chr3.4:77308743-77308762 | MS.gene69759:intron | 50.0% | |
| AGTCTCAGTTAGGGCAACCT+GGG | - | chr3.4:77309660-77309679 | MS.gene69759:CDS | 50.0% | |
| CCAGGGTTGCCAATCCTTAT+AGG | - | chr3.4:77306702-77306721 | MS.gene69759:intron | 50.0% | |
| GTCGATACTACGATAGCCGA+GGG | - | chr3.4:77309214-77309233 | MS.gene69759:intron | 50.0% | |
| TCACATTATGGTCCAGGAGG+AGG | - | chr3.4:77307250-77307269 | MS.gene69759:intron | 50.0% | |
| ! | CCTATAAGGATTGGCAACCC+TGG | + | chr3.4:77306705-77306724 | None:intergenic | 50.0% |
| ! | CGACCAACTAACTTGCCAAC+AGG | + | chr3.4:77309198-77309217 | None:intergenic | 50.0% |
| ! | TGATGTTGGCTACCCTAGGT+TGG | - | chr3.4:77309574-77309593 | MS.gene69759:intron | 50.0% |
| !! | GTAGTGTTGACCTGAGACCT+TGG | - | chr3.4:77306947-77306966 | MS.gene69759:intron | 50.0% |
| AGAGCACAGTCCAAGGTCTC+AGG | + | chr3.4:77306960-77306979 | None:intergenic | 55.0% | |
| ATACCTCACCGCCCTCATCT+TGG | + | chr3.4:77309353-77309372 | None:intergenic | 55.0% | |
| GAAAGGGGTCGAAGCTAAGG+CGG | - | chr3.4:77309254-77309273 | MS.gene69759:intron | 55.0% | |
| GAGTCTCAGTTAGGGCAACC+TGG | - | chr3.4:77309659-77309678 | MS.gene69759:CDS | 55.0% | |
| GCTTCTCGCGCTTTCTTCTC+TGG | - | chr3.4:77307416-77307435 | MS.gene69759:intron | 55.0% | |
| GGGCGGTGAGGTATAGACTA+TGG | - | chr3.4:77309359-77309378 | MS.gene69759:intron | 55.0% | |
| GGTCGATACTACGATAGCCG+AGG | - | chr3.4:77309213-77309232 | MS.gene69759:intron | 55.0% | |
| ! | GGTGTGATGTTGGCTACCCT+AGG | - | chr3.4:77309570-77309589 | MS.gene69759:intron | 55.0% |
| ! | GTTAGGGCAACCTGGGTTAG+AGG | - | chr3.4:77309667-77309686 | MS.gene69759:CDS | 55.0% |
| !! | GGACTCACTGACTCATTGCG+CGG | - | chr3.4:77308346-77308365 | MS.gene69759:intron | 55.0% |
| GTCGAAGCTAAGGCGGCAAG+AGG | - | chr3.4:77309261-77309280 | MS.gene69759:intron | 60.0% | |
| GAGCCAAGATGAGGGCGGTG+AGG | - | chr3.4:77309347-77309366 | MS.gene69759:intron | 65.0% | |
| GCGCGGTCTGTCTAGCACTG+AGG | - | chr3.4:77308363-77308382 | MS.gene69759:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77306382 | 77309733 | 77306382 | ID=MS.gene69759 |
| chr3.4 | mRNA | 77306382 | 77309733 | 77306382 | ID=MS.gene69759.t1;Parent=MS.gene69759 |
| chr3.4 | exon | 77309638 | 77309733 | 77309638 | ID=MS.gene69759.t1.exon1;Parent=MS.gene69759.t1 |
| chr3.4 | CDS | 77309638 | 77309733 | 77309638 | ID=cds.MS.gene69759.t1;Parent=MS.gene69759.t1 |
| chr3.4 | exon | 77309382 | 77309458 | 77309382 | ID=MS.gene69759.t1.exon2;Parent=MS.gene69759.t1 |
| chr3.4 | CDS | 77309382 | 77309458 | 77309382 | ID=cds.MS.gene69759.t1;Parent=MS.gene69759.t1 |
| chr3.4 | exon | 77308822 | 77308893 | 77308822 | ID=MS.gene69759.t1.exon3;Parent=MS.gene69759.t1 |
| chr3.4 | CDS | 77308822 | 77308893 | 77308822 | ID=cds.MS.gene69759.t1;Parent=MS.gene69759.t1 |
| chr3.4 | exon | 77308666 | 77308703 | 77308666 | ID=MS.gene69759.t1.exon4;Parent=MS.gene69759.t1 |
| chr3.4 | CDS | 77308666 | 77308703 | 77308666 | ID=cds.MS.gene69759.t1;Parent=MS.gene69759.t1 |
| chr3.4 | exon | 77307731 | 77307774 | 77307731 | ID=MS.gene69759.t1.exon5;Parent=MS.gene69759.t1 |
| chr3.4 | CDS | 77307731 | 77307774 | 77307731 | ID=cds.MS.gene69759.t1;Parent=MS.gene69759.t1 |
| chr3.4 | exon | 77307552 | 77307598 | 77307552 | ID=MS.gene69759.t1.exon6;Parent=MS.gene69759.t1 |
| chr3.4 | CDS | 77307552 | 77307598 | 77307552 | ID=cds.MS.gene69759.t1;Parent=MS.gene69759.t1 |
| chr3.4 | exon | 77306747 | 77306921 | 77306747 | ID=MS.gene69759.t1.exon7;Parent=MS.gene69759.t1 |
| chr3.4 | CDS | 77306747 | 77306921 | 77306747 | ID=cds.MS.gene69759.t1;Parent=MS.gene69759.t1 |
| chr3.4 | exon | 77306382 | 77306549 | 77306382 | ID=MS.gene69759.t1.exon8;Parent=MS.gene69759.t1 |
| chr3.4 | CDS | 77306382 | 77306549 | 77306382 | ID=cds.MS.gene69759.t1;Parent=MS.gene69759.t1 |
| Gene Sequence |
| Protein sequence |
