AlfalfaGEDB | MS.gene69952

M. sativa cultivar XinJiangDaYe / MS.gene69952

KEGG: K11275
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006325 GO:0006334 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044815 GO:0065003 GO:0065004 GO:0071824 GO:0071840 GO:0097159 GO:0110165 GO:1901363
PFAM: PF00538.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69952.t1	XP_013468967.1	96.8	94	1	1	1	94	1	92	2.20E-37	165.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69952.t1	P08283	68.9	74	23	0	22	95	59	132	3.5e-20	99.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69952.t1	A0A072VLX5	96.8	94	1	1	1	94	1	92	1.6e-37	165.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049596	MS.gene69952	0.839062	1.98E-57	-1.69E-46
MS.gene05124	MS.gene69952	0.833593	4.88E-56	-1.69E-46
MS.gene053173	MS.gene69952	0.812621	3.87E-51	-1.69E-46
MS.gene054551	MS.gene69952	0.812305	4.53E-51	-1.69E-46
MS.gene054633	MS.gene69952	0.803878	2.82E-49	-1.69E-46
MS.gene054643	MS.gene69952	0.853254	2.70E-61	-1.69E-46
MS.gene05640	MS.gene69952	0.806796	6.91E-50	-1.69E-46
MS.gene058818	MS.gene69952	0.836248	1.05E-56	-1.69E-46
MS.gene058844	MS.gene69952	0.816864	4.44E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69952.t1	MTR_1g080700	95.699	186	5	2	1	185	1	184	7.37e-106	301
MS.gene69952.t1	MTR_1g070390	69.880	83	25	0	12	94	50	132	8.04e-27	102
MS.gene69952.t1	MTR_1g070435	69.880	83	25	0	12	94	50	132	2.03e-26	101
MS.gene69952.t1	MTR_1g070440	63.964	111	38	2	24	132	9	119	7.84e-26	99.4
MS.gene69952.t1	MTR_7g096280	61.644	73	28	0	19	91	56	128	1.45e-25	100
MS.gene69952.t1	MTR_5g021730	46.316	95	39	3	1	94	22	105	9.35e-18	76.6
MS.gene69952.t1	MTR_8g077160	69.048	42	13	0	12	53	49	90	2.43e-13	63.2
MS.gene69952.t1	MTR_3g065570	42.857	70	40	0	20	89	8	77	8.66e-13	63.9
MS.gene69952.t1	MTR_6g079520	44.444	72	37	1	23	91	40	111	1.78e-12	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69952.t1	AT2G30620	68.085	94	29	1	24	117	61	153	2.30e-32	115
MS.gene69952.t1	AT2G30620	68.085	94	29	1	24	117	61	153	5.85e-32	116
MS.gene69952.t1	AT1G06760	77.941	68	15	0	24	91	61	128	1.29e-23	94.7
MS.gene69952.t1	AT2G18050	44.094	127	62	3	14	131	8	134	4.11e-21	85.5
MS.gene69952.t1	AT2G18050	39.024	123	70	3	31	148	1	123	1.05e-16	73.2

Find 0 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	GATGAAGAAGAATGAGTTTG+CGG	-	11145:18798-18817	None:intergenic	35.0%
	GTGAGTTTGAAAGAAAGAAC+TGG	+	11145:18709-18728	MS.gene69952:CDS	35.0%
	TCTTCATCTGAAGAAATCTG+TGG	+	11145:18810-18829	MS.gene69952:CDS	35.0%
!	ATTCATCGAAGAGAAGCATA+AGG	+	11145:18756-18775	MS.gene69952:CDS	35.0%
!!	ATTTGTTATTACCTCAGCGT+AGG	-	11145:18590-18609	None:intergenic	35.0%
	AAACTCCTTCAAAATCGCTC+CGG	+	11145:18858-18877	MS.gene69952:CDS	40.0%
	AGAATGAGTTTGCGGAATGT+TGG	-	11145:18790-18809	None:intergenic	40.0%
	TGAATTTCGTTATCGCGTGT+TGG	-	11145:18741-18760	None:intergenic	40.0%
!	CACTTCTTAGCTTTCTTCAC+CGG	-	11145:19138-19157	None:intergenic	40.0%
	ACCGGAGTCTTAACACTCTT+CGG	-	11145:19120-19139	None:intergenic	45.0%
	CCCTTAACACTCTTCGCTTT+CGG	-	11145:19054-19073	None:intergenic	45.0%
	CTGAAGAAATCTGTGGCTTC+TGG	+	11145:18817-18836	MS.gene69952:CDS	45.0%
	GTTATTACCTCAGCGTAGGT+AGG	-	11145:18586-18605	None:intergenic	45.0%
	TTCGGCTTCACAACAGCTTT+AGG	-	11145:19036-19055	None:intergenic	45.0%
!	TTTGCTGCAGCGGTTTTCTT+GGG	-	11145:18547-18566	None:intergenic	45.0%
!!	CCGAAAGCGAAGAGTGTTAA+GGG	+	11145:19051-19070	MS.gene69952:CDS	45.0%
	CTTCTTAGCAGGAGCAGTAG+CGG	-	11145:18911-18930	None:intergenic	50.0%
	TAAGGCTGCAACTAAGCCGA+AGG	+	11145:18957-18976	MS.gene69952:CDS	50.0%
	TGCTCCTGCTAAGAAGGCTA+AGG	+	11145:18915-18934	MS.gene69952:CDS	50.0%
	TGTGAAGAAAGCGGCGAAGA+AGG	+	11145:19080-19099	MS.gene69952:CDS	50.0%
	TTCACAGCAGCTTTCGCCTT+CGG	-	11145:18976-18995	None:intergenic	50.0%
!	ACAGCCTTAGCCTTCTTAGC+AGG	-	11145:18922-18941	None:intergenic	50.0%
!	CTTTGCTGCAGCGGTTTTCT+TGG	-	11145:18548-18567	None:intergenic	50.0%
!	TTCTTCGCCGCTTTCTTCAC+AGG	-	11145:19081-19100	None:intergenic	50.0%
!!	GCCGAAAGCGAAGAGTGTTA+AGG	+	11145:19050-19069	MS.gene69952:CDS	50.0%
!!	GCCGAAGAGTGTTAAGACTC+CGG	+	11145:19116-19135	MS.gene69952:CDS	50.0%
!!	TTTGGCTTTGCGGCAGCTTT+CGG	-	11145:19000-19019	None:intergenic	50.0%
	AAGGCTGTTACGAAGCCAGC+CGG	+	11145:18934-18953	MS.gene69952:CDS	55.0%
	CGCTACTGCTCCTGCTAAGA+AGG	+	11145:18909-18928	MS.gene69952:CDS	55.0%
	CGGCTTAGTTGCAGCCTTAC+CGG	-	11145:18956-18975	None:intergenic	55.0%
	CTCTCATCCTACCTACGCTG+AGG	+	11145:18576-18595	MS.gene69952:CDS	55.0%
	CTTCAAAATCGCTCCGGCAG+CGG	+	11145:18864-18883	MS.gene69952:CDS	55.0%
	GAAGAAAGCGGCGAAGAAGG+TGG	+	11145:19083-19102	MS.gene69952:CDS	55.0%
	GAGAGGCTTCTTTGCTGCAG+CGG	-	11145:18557-18576	None:intergenic	55.0%
	GCGTAGGTAGGATGAGAGAG+AGG	-	11145:18574-18593	None:intergenic	55.0%
	GGGTACGCCTGTGAAGAAAG+CGG	+	11145:19071-19090	MS.gene69952:CDS	55.0%
	TGCCGCAAAGCCAAAAGCAG+CGG	+	11145:19005-19024	MS.gene69952:CDS	55.0%
	TGTTACGAAGCCAGCCGGTA+AGG	+	11145:18939-18958	MS.gene69952:CDS	55.0%
	TTAGTTGCAGCCTTACCGGC+TGG	-	11145:18952-18971	None:intergenic	55.0%
!	GCAGCGGTTTTCTTGGGCTT+GGG	-	11145:18541-18560	None:intergenic	55.0%
!	GGTTTTCTTGGGCTTGGGCT+TGG	-	11145:18536-18555	None:intergenic	55.0%
!	TGCAGCGGTTTTCTTGGGCT+TGG	-	11145:18542-18561	None:intergenic	55.0%
!!	TTAGGCTTCGCCGCTGCTTT+TGG	-	11145:19018-19037	None:intergenic	55.0%
	GGCGAAAACTGCTCCGGTGA+AGG	+	11145:18885-18904	MS.gene69952:CDS	60.0%
	GGCTTCTGGCAAGCTCGTGA+AGG	+	11145:18831-18850	MS.gene69952:CDS	60.0%
!	CGCTGCCGGAGCGATTTTGA+AGG	-	11145:18866-18885	None:intergenic	60.0%
!	CTTGGGCTTGGTCTGAGCAG+CGG	-	11145:18524-18543	None:intergenic	60.0%
!!!	CGCCGCTGCTTTTGGCTTTG+CGG	-	11145:19010-19029	None:intergenic	60.0%
	GGAGCAGTAGCGGCCTTCAC+CGG	-	11145:18901-18920	None:intergenic	65.0%
	GGCAGCGGCGAAAACTGCTC+CGG	+	11145:18879-18898	MS.gene69952:CDS	65.0%
	TTGGTCTGAGCAGCGGCGGT+GGG	-	11145:18517-18536	None:intergenic	65.0%
!	GGAGCAGTTTTCGCCGCTGC+CGG	-	11145:18880-18899	None:intergenic	65.0%
	CTTGGTCTGAGCAGCGGCGG+TGG	-	11145:18518-18537	None:intergenic	70.0%
!	GGGCTTGGTCTGAGCAGCGG+CGG	-	11145:18521-18540	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
11145	gene	18508	19158	18508	ID=MS.gene69952
11145	mRNA	18508	19158	18508	ID=MS.gene69952.t1;Parent=MS.gene69952
11145	exon	18508	18597	18508	ID=MS.gene69952.t1.exon1;Parent=MS.gene69952.t1
11145	CDS	18508	18597	18508	ID=cds.MS.gene69952.t1;Parent=MS.gene69952.t1
11145	exon	18691	19158	18691	ID=MS.gene69952.t1.exon2;Parent=MS.gene69952.t1
11145	CDS	18691	19158	18691	ID=cds.MS.gene69952.t1;Parent=MS.gene69952.t1

Gene Sequence

>MS.gene69952

ATGTCTCCCACCGCCGCTGCTCAGACCAAGCCCAAGCCCAAGAAAACCGCTGCAGCAAAGAAGCCTCTCTCTCATCCTACCTACGCTGAGGTAATAACAAATCTCAATTTTCAAATTTTGTCTTAATTTTCTTAATTTTTGAAATTTGAATTCTGATTTTGTTTTTTGATTTTTTTTTTGTAGATGATAACTGAAGCAATTGTGAGTTTGAAAGAAAGAACTGGTTCAAGCCAACACGCGATAACGAAATTCATCGAAGAGAAGCATAAGGATTTATCTCCAACATTCCGCAAACTCATTCTTCTTCATCTGAAGAAATCTGTGGCTTCTGGCAAGCTCGTGAAGGTGAAAAACTCCTTCAAAATCGCTCCGGCAGCGGCGAAAACTGCTCCGGTGAAGGCCGCTACTGCTCCTGCTAAGAAGGCTAAGGCTGTTACGAAGCCAGCCGGTAAGGCTGCAACTAAGCCGAAGGCGAAAGCTGCTGTGAAGCCGAAAGCTGCCGCAAAGCCAAAAGCAGCGGCGAAGCCTAAAGCTGTTGTGAAGCCGAAAGCGAAGAGTGTTAAGGGTACGCCTGTGAAGAAAGCGGCGAAGAAGGTGGTTGCGAAGAAGCCGAAGAGTGTTAAGACTCCGGTGAAGAAAGCTAAGAAGTGA

Protein sequence

>MS.gene69952.t1

MSPTAAAQTKPKPKKTAAAKKPLSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKKSVASGKLVKVKNSFKIAPAAAKTAPVKAATAPAKKAKAVTKPAGKAATKPKAKAAVKPKAAAKPKAAAKPKAVVKPKAKSVKGTPVKKAAKKVVAKKPKSVKTPVKKAKK