Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70627.t1 | XP_003601269.1 | 95 | 318 | 13 | 1 | 1 | 315 | 1 | 318 | 7.90E-165 | 589.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70627.t1 | Q9ZUD9 | 36.1 | 310 | 180 | 4 | 15 | 307 | 8 | 316 | 5.2e-48 | 193.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70627.t1 | G7J5G4 | 95.0 | 318 | 13 | 1 | 1 | 315 | 1 | 318 | 5.7e-165 | 589.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05141 | MS.gene70627 | 0.804077 | 2.57E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene70627 | -0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene05234 | MS.gene70627 | 0.809887 | 1.52E-50 | -1.69E-46 |
| MS.gene053421 | MS.gene70627 | 0.86086 | 1.54E-63 | -1.69E-46 |
| MS.gene055202 | MS.gene70627 | 0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene057173 | MS.gene70627 | 0.838938 | 2.14E-57 | -1.69E-46 |
| MS.gene058157 | MS.gene70627 | -0.800958 | 1.13E-48 | -1.69E-46 |
| MS.gene061226 | MS.gene70627 | 0.829934 | 3.90E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70627.t1 | MTR_3g077870 | 94.969 | 318 | 13 | 1 | 1 | 315 | 1 | 318 | 0.0 | 620 |
| MS.gene70627.t1 | MTR_4g105740 | 49.518 | 311 | 141 | 5 | 9 | 315 | 11 | 309 | 2.10e-101 | 300 |
| MS.gene70627.t1 | MTR_4g105740 | 49.508 | 305 | 138 | 5 | 9 | 309 | 11 | 303 | 4.19e-99 | 295 |
| MS.gene70627.t1 | MTR_8g088250 | 35.507 | 276 | 166 | 4 | 39 | 303 | 5 | 279 | 1.68e-53 | 177 |
| MS.gene70627.t1 | MTR_1g112330 | 28.657 | 335 | 193 | 6 | 6 | 299 | 223 | 552 | 3.64e-39 | 145 |
| MS.gene70627.t1 | MTR_1g112330 | 28.402 | 338 | 193 | 6 | 6 | 299 | 223 | 555 | 8.83e-39 | 144 |
| MS.gene70627.t1 | MTR_5g032190 | 29.969 | 327 | 173 | 8 | 20 | 300 | 233 | 549 | 3.01e-36 | 137 |
| MS.gene70627.t1 | MTR_5g029580 | 29.021 | 286 | 160 | 8 | 58 | 305 | 64 | 344 | 5.30e-34 | 128 |
| MS.gene70627.t1 | MTR_1g112330 | 32.328 | 232 | 144 | 5 | 8 | 231 | 225 | 451 | 4.87e-33 | 127 |
| MS.gene70627.t1 | MTR_7g011550 | 29.643 | 280 | 159 | 7 | 64 | 309 | 257 | 532 | 1.51e-32 | 126 |
| MS.gene70627.t1 | MTR_5g032190 | 34.234 | 222 | 126 | 7 | 20 | 231 | 233 | 444 | 2.04e-30 | 120 |
| MS.gene70627.t1 | MTR_5g032190 | 34.234 | 222 | 126 | 7 | 20 | 231 | 233 | 444 | 2.48e-30 | 120 |
| MS.gene70627.t1 | MTR_7g011880 | 32.110 | 109 | 66 | 2 | 182 | 282 | 78 | 186 | 6.35e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70627.t1 | AT1G23550 | 37.500 | 280 | 162 | 3 | 47 | 314 | 45 | 323 | 9.89e-63 | 202 |
| MS.gene70627.t1 | AT3G47720 | 36.709 | 316 | 176 | 8 | 10 | 311 | 8 | 313 | 5.81e-57 | 187 |
| MS.gene70627.t1 | AT5G62520 | 40.727 | 275 | 145 | 8 | 47 | 311 | 42 | 308 | 1.44e-55 | 183 |
| MS.gene70627.t1 | AT1G70440 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.42e-47 | 162 |
| MS.gene70627.t1 | AT1G70440 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.42e-47 | 162 |
| MS.gene70627.t1 | AT1G32230 | 31.333 | 300 | 155 | 7 | 58 | 311 | 276 | 570 | 4.84e-40 | 147 |
| MS.gene70627.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene70627.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene70627.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene70627.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene70627.t1 | AT1G32230 | 31.741 | 293 | 148 | 7 | 58 | 303 | 276 | 563 | 1.88e-39 | 146 |
| MS.gene70627.t1 | AT5G62520 | 40.104 | 192 | 100 | 7 | 47 | 228 | 42 | 228 | 2.00e-37 | 134 |
| MS.gene70627.t1 | AT2G35510 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.24e-31 | 124 |
| MS.gene70627.t1 | AT2G35510 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.24e-31 | 124 |
| MS.gene70627.t1 | AT2G35510 | 32.642 | 193 | 111 | 4 | 48 | 230 | 262 | 445 | 1.78e-25 | 106 |
Find 68 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACTGTGCAGGGTTATTT+TGG | 0.115015 | 3.1:+64015335 | MS.gene70627:CDS |
| AGTTGTGCGGATTATGATTC+TGG | 0.187777 | 3.1:+64015402 | MS.gene70627:CDS |
| TTCTCCTAACCTAACTAAAA+AGG | 0.275442 | 3.1:-64014122 | None:intergenic |
| CTTTGTAGAACTTGCAAATC+AGG | 0.284073 | 3.1:-64015736 | None:intergenic |
| CTCCAACTAAGTACATGATT+TGG | 0.360085 | 3.1:+64015442 | MS.gene70627:CDS |
| CTAAAGACGAGGTTTCTTCA+TGG | 0.400145 | 3.1:+64014166 | MS.gene70627:CDS |
| GACGAGGTTTCTTCATGGCT+TGG | 0.402614 | 3.1:+64014171 | MS.gene70627:CDS |
| ACGAGGTTTCTTCATGGCTT+GGG | 0.407523 | 3.1:+64014172 | MS.gene70627:CDS |
| TTCTTCGCCGGTGGTGGTGG+CGG | 0.412701 | 3.1:-64014071 | None:intergenic |
| CAAGTTCTACAAAGCTAGAA+AGG | 0.426903 | 3.1:+64015745 | MS.gene70627:CDS |
| GTAGAATGAATACTCATGTT+TGG | 0.434386 | 3.1:+64015469 | MS.gene70627:CDS |
| ACTGGTGAGAATGACGTTAG+AGG | 0.440885 | 3.1:+64014352 | MS.gene70627:CDS |
| CATCATGATCCCATTCCTCT+TGG | 0.443393 | 3.1:-64013997 | None:intergenic |
| CTTTGAAGAGGAGAATCATC+TGG | 0.446663 | 3.1:-64014427 | None:intergenic |
| TTCAAGGTTTCTTCTTTGAA+AGG | 0.449498 | 3.1:+64015510 | MS.gene70627:CDS |
| GTTGTGCGGATTATGATTCT+GGG | 0.450865 | 3.1:+64015403 | MS.gene70627:CDS |
| CTCCAAATCATGTACTTAGT+TGG | 0.452958 | 3.1:-64015444 | None:intergenic |
| TTGTTCTTCGCCGGTGGTGG+TGG | 0.454132 | 3.1:-64014074 | None:intergenic |
| ATCAAGTTGTGGCGAAACCT+TGG | 0.465639 | 3.1:-64015708 | None:intergenic |
| TGAGGCATTTGATACTGTGC+AGG | 0.465779 | 3.1:+64015325 | MS.gene70627:CDS |
| GGAGGAGTCTTCACCGATGC+TGG | 0.466913 | 3.1:-64014020 | None:intergenic |
| TTTGCAGCGGTTGAGATTGA+AGG | 0.470522 | 3.1:+64015629 | MS.gene70627:intron |
| TATGGAATTCCAAGAGGAAT+GGG | 0.475448 | 3.1:+64013988 | None:intergenic |
| ATAGAAATCAAAGTCGGAAA+AGG | 0.484157 | 3.1:-64015680 | None:intergenic |
| TGCGAGACCAACTTCACCTT+CGG | 0.491538 | 3.1:+64015655 | MS.gene70627:CDS |
| ACCGCTTTCGCAGTCGGAAA+CGG | 0.496051 | 3.1:-64014044 | None:intergenic |
| TTTGATTTCTATGCTTTCCA+AGG | 0.497741 | 3.1:+64015691 | MS.gene70627:CDS |
| GAATCATAATCCGCACAACT+TGG | 0.501035 | 3.1:-64015399 | None:intergenic |
| TATGCTTGGTATGGAGCTAC+TGG | 0.501397 | 3.1:+64014334 | MS.gene70627:CDS |
| TTCGCAGTCGGAAACGGTGG+AGG | 0.502683 | 3.1:-64014038 | None:intergenic |
| TCGAAGCCGCGCCTGTGAAA+CGG | 0.510220 | 3.1:-64014251 | None:intergenic |
| TTGAAGCTTAAAACATATGC+AGG | 0.515889 | 3.1:-64015492 | None:intergenic |
| TAAAGAACTAACCTTTGAAG+AGG | 0.520559 | 3.1:-64014439 | None:intergenic |
| TTTGTAGAACTTGCAAATCA+GGG | 0.522828 | 3.1:-64015735 | None:intergenic |
| GTGTTCTGACGCCGTTTCAC+AGG | 0.529220 | 3.1:+64014240 | MS.gene70627:CDS |
| AACGGTTTCAGTCATGTCCA+TGG | 0.529234 | 3.1:+64014385 | MS.gene70627:CDS |
| GAAGAAACCTCGTCTTTAGT+AGG | 0.529434 | 3.1:-64014162 | None:intergenic |
| TCGTTGTTCTTCGCCGGTGG+TGG | 0.529479 | 3.1:-64014077 | None:intergenic |
| AGTTGTGCTGTTGGCAGAGA+TGG | 0.530261 | 3.1:+64015300 | MS.gene70627:CDS |
| CTATGGAATTCCAAGAGGAA+TGG | 0.530385 | 3.1:+64013987 | None:intergenic |
| ACCGTTTCCGACTGCGAAAG+CGG | 0.530594 | 3.1:+64014043 | MS.gene70627:CDS |
| GGTGTTTCCGCCACCACCAC+CGG | 0.531519 | 3.1:+64014064 | MS.gene70627:CDS |
| GTTAGAGGCATTCTATCAAA+CGG | 0.543708 | 3.1:+64014367 | MS.gene70627:CDS |
| ATTCGAATGTGAAATATGCT+TGG | 0.547805 | 3.1:+64014320 | MS.gene70627:CDS |
| CAGATGATTCTCCTCTTCAA+AGG | 0.551412 | 3.1:+64014428 | MS.gene70627:CDS |
| AATGTGAAATATGCTTGGTA+TGG | 0.558383 | 3.1:+64014325 | MS.gene70627:CDS |
| TCGTTGTCGTTGTTCTTCGC+CGG | 0.558549 | 3.1:-64014083 | None:intergenic |
| GGAAACACCGCTTTCGCAGT+CGG | 0.561570 | 3.1:-64014050 | None:intergenic |
| TTGTCGTTGTTCTTCGCCGG+TGG | 0.567729 | 3.1:-64014080 | None:intergenic |
| AAAGGCACCGAAGGTGAAGT+TGG | 0.570890 | 3.1:-64015662 | None:intergenic |
| GAAGCTGTTTCGAAACTTCG+CGG | 0.575795 | 3.1:+64014292 | MS.gene70627:CDS |
| CTGACGCCGTTTCACAGGCG+CGG | 0.588804 | 3.1:+64014245 | MS.gene70627:CDS |
| GAATGAAACTAGTTGTACCT+TGG | 0.596219 | 3.1:-64015965 | None:intergenic |
| ACGGTTTCAGTCATGTCCAT+GGG | 0.601023 | 3.1:+64014386 | MS.gene70627:CDS |
| TGGGATCATGATGCCAGCAT+CGG | 0.605132 | 3.1:+64014007 | MS.gene70627:CDS |
| AAAGTCGGAAAAGGCACCGA+AGG | 0.610022 | 3.1:-64015671 | None:intergenic |
| GAAAGCATAGAAATCAAAGT+CGG | 0.616257 | 3.1:-64015686 | None:intergenic |
| AGAGACAGATGCTATTCCCA+TGG | 0.619618 | 3.1:-64014402 | None:intergenic |
| GAGGCATTTGATACTGTGCA+GGG | 0.621915 | 3.1:+64015326 | MS.gene70627:CDS |
| ATCAGGGCAATATCAAGTTG+TGG | 0.630687 | 3.1:-64015719 | None:intergenic |
| GCTTTCGCAGTCGGAAACGG+TGG | 0.645384 | 3.1:-64014041 | None:intergenic |
| CATTAAGTATTATAGAGCCA+AGG | 0.648089 | 3.1:+64015948 | MS.gene70627:CDS |
| ACAATGTTATCCAAGTTGTG+CGG | 0.655418 | 3.1:+64015389 | MS.gene70627:CDS |
| TTCACGACCTACTAAAGACG+AGG | 0.669260 | 3.1:+64014155 | MS.gene70627:CDS |
| TTGTGCGGATTATGATTCTG+GGG | 0.671025 | 3.1:+64015404 | MS.gene70627:CDS |
| CTGTTGGCAGAGATGGCGTG+AGG | 0.672325 | 3.1:+64015307 | MS.gene70627:CDS |
| GCTGTTTCGAAACTTCGCGG+TGG | 0.700179 | 3.1:+64014295 | MS.gene70627:CDS |
| ATTCACTATGGAATTCCAAG+AGG | 0.710595 | 3.1:+64013982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTAAATTCAAATTAACAT+TGG | - | chr3.1:64014469-64014488 | None:intergenic | 20.0% |
| !!! | AAGATAAAGTGTTTTATGTT+TGG | - | chr3.1:64015071-64015090 | None:intergenic | 20.0% |
| !!! | TCCAATGTTAATTTGAATTT+AGG | + | chr3.1:64014465-64014484 | MS.gene70627:intron | 20.0% |
| !!! | TTTTTTATTGTTTTTTGCAG+CGG | + | chr3.1:64015616-64015635 | MS.gene70627:intron | 20.0% |
| ! | ACTAAATTCATGAAACAACA+AGG | - | chr3.1:64015584-64015603 | None:intergenic | 25.0% |
| ! | TCAAGTATAATCAATTCTTG+AGG | - | chr3.1:64014974-64014993 | None:intergenic | 25.0% |
| ! | TCATAAGCTATTCCAAAATA+AGG | + | chr3.1:64014577-64014596 | MS.gene70627:intron | 25.0% |
| ! | TTGAACAATAAGTGTATGTA+TGG | - | chr3.1:64015149-64015168 | None:intergenic | 25.0% |
| !! | CTTTTTCTATCAATTCATGT+CGG | - | chr3.1:64015891-64015910 | None:intergenic | 25.0% |
| !! | TTTTTCTATCAATTCATGTC+GGG | - | chr3.1:64015890-64015909 | None:intergenic | 25.0% |
| !!! | ATTCTGATTCCTTTTTAGTT+AGG | + | chr3.1:64014113-64014132 | MS.gene70627:CDS | 25.0% |
| !!! | TAGAATTGATTTTGCCATTT+TGG | + | chr3.1:64014652-64014671 | MS.gene70627:intron | 25.0% |
| AAATAAGGCAACATTCCATA+AGG | + | chr3.1:64014592-64014611 | MS.gene70627:intron | 30.0% | |
| AATGTGAAATATGCTTGGTA+TGG | + | chr3.1:64014325-64014344 | MS.gene70627:CDS | 30.0% | |
| AGCTTCTGCATAAAAAAGAA+AGG | - | chr3.1:64014278-64014297 | None:intergenic | 30.0% | |
| ATACTCAATAGCAACCAAAA+TGG | - | chr3.1:64014669-64014688 | None:intergenic | 30.0% | |
| ATAGAAATCAAAGTCGGAAA+AGG | - | chr3.1:64015683-64015702 | None:intergenic | 30.0% | |
| ATTCGAATGTGAAATATGCT+TGG | + | chr3.1:64014320-64014339 | MS.gene70627:CDS | 30.0% | |
| CATTAAGTATTATAGAGCCA+AGG | + | chr3.1:64015948-64015967 | MS.gene70627:CDS | 30.0% | |
| GTAGAATGAATACTCATGTT+TGG | + | chr3.1:64015469-64015488 | MS.gene70627:CDS | 30.0% | |
| TCTTAAACCAATATGCAAGT+AGG | - | chr3.1:64015789-64015808 | None:intergenic | 30.0% | |
| TTCAAGGTTTCTTCTTTGAA+AGG | + | chr3.1:64015510-64015529 | MS.gene70627:CDS | 30.0% | |
| TTCTCCTAACCTAACTAAAA+AGG | - | chr3.1:64014125-64014144 | None:intergenic | 30.0% | |
| TTGAAGCTTAAAACATATGC+AGG | - | chr3.1:64015495-64015514 | None:intergenic | 30.0% | |
| TTTGTAGAACTTGCAAATCA+GGG | - | chr3.1:64015738-64015757 | None:intergenic | 30.0% | |
| ! | AATTGATTCTACTTGAAGCT+AGG | + | chr3.1:64014693-64014712 | MS.gene70627:intron | 30.0% |
| ! | GAAAGCATAGAAATCAAAGT+CGG | - | chr3.1:64015689-64015708 | None:intergenic | 30.0% |
| ! | TAAAGAACTAACCTTTGAAG+AGG | - | chr3.1:64014442-64014461 | None:intergenic | 30.0% |
| ! | TTTGATTTCTATGCTTTCCA+AGG | + | chr3.1:64015691-64015710 | MS.gene70627:CDS | 30.0% |
| ! | TTTTCGTTTCTGACTAAAAG+TGG | - | chr3.1:64014802-64014821 | None:intergenic | 30.0% |
| !! | ACTGATTTTCACATGTTTGA+TGG | + | chr3.1:64014926-64014945 | MS.gene70627:intron | 30.0% |
| !! | TGCATATGTTTTAAGCTTCA+AGG | + | chr3.1:64015494-64015513 | MS.gene70627:CDS | 30.0% |
| !!! | GATTCCTTTTTAGTTAGGTT+AGG | + | chr3.1:64014118-64014137 | MS.gene70627:CDS | 30.0% |
| !!! | TATGGAATGTTGCCTTATTT+TGG | - | chr3.1:64014592-64014611 | None:intergenic | 30.0% |
| !!! | TTTTTAGTTAGGTTAGGAGA+AGG | + | chr3.1:64014124-64014143 | MS.gene70627:CDS | 30.0% |
| ACAATGTTATCCAAGTTGTG+CGG | + | chr3.1:64015389-64015408 | MS.gene70627:CDS | 35.0% | |
| ACACATGCTTAGTGTATGTT+TGG | + | chr3.1:64014860-64014879 | MS.gene70627:intron | 35.0% | |
| AGTGTAAAAAGTTGTGCTGT+TGG | + | chr3.1:64015291-64015310 | MS.gene70627:intron | 35.0% | |
| CAAGTTCTACAAAGCTAGAA+AGG | + | chr3.1:64015745-64015764 | MS.gene70627:CDS | 35.0% | |
| CGAAATGTCTAGTGTAAGTT+TGG | + | chr3.1:64014620-64014639 | MS.gene70627:intron | 35.0% | |
| CTCCAAATCATGTACTTAGT+TGG | - | chr3.1:64015447-64015466 | None:intergenic | 35.0% | |
| CTCCAACTAAGTACATGATT+TGG | + | chr3.1:64015442-64015461 | MS.gene70627:CDS | 35.0% | |
| CTTTGTAGAACTTGCAAATC+AGG | - | chr3.1:64015739-64015758 | None:intergenic | 35.0% | |
| GAAAAAGTGAGACAAATTGC+AGG | + | chr3.1:64015904-64015923 | MS.gene70627:CDS | 35.0% | |
| GAATGAAACTAGTTGTACCT+TGG | - | chr3.1:64015968-64015987 | None:intergenic | 35.0% | |
| GACTAAAAGTGGTATGTGTT+TGG | - | chr3.1:64014791-64014810 | None:intergenic | 35.0% | |
| TTCTACAAAGCTAGAAAGGT+AGG | + | chr3.1:64015749-64015768 | MS.gene70627:intron | 35.0% | |
| TTTGCTTCCTACTTGCATAT+TGG | + | chr3.1:64015779-64015798 | MS.gene70627:intron | 35.0% | |
| ! | ACTTCTAGAGGGATCAAAAT+TGG | + | chr3.1:64014887-64014906 | MS.gene70627:intron | 35.0% |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | + | chr3.1:64014875-64014894 | MS.gene70627:intron | 35.0% |
| ! | GGCAAAATCAATTCTAAGAG+TGG | - | chr3.1:64014648-64014667 | None:intergenic | 35.0% |
| ! | TCATTTGCTCTATTTCTTGC+AGG | + | chr3.1:64015852-64015871 | MS.gene70627:intron | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | + | chr3.1:64014876-64014895 | MS.gene70627:intron | 35.0% |
| !! | ATACTGTGCAGGGTTATTTT+GGG | + | chr3.1:64015336-64015355 | MS.gene70627:CDS | 35.0% |
| !! | GTTAGAGGCATTCTATCAAA+CGG | + | chr3.1:64014367-64014386 | MS.gene70627:CDS | 35.0% |
| AAAGCTAGAAAGGTAGGTGT+TGG | + | chr3.1:64015755-64015774 | MS.gene70627:intron | 40.0% | |
| AGACATTTCGAGAGACCTTA+TGG | - | chr3.1:64014610-64014629 | None:intergenic | 40.0% | |
| CAGATGATTCTCCTCTTCAA+AGG | + | chr3.1:64014428-64014447 | MS.gene70627:CDS | 40.0% | |
| CTAAAGACGAGGTTTCTTCA+TGG | + | chr3.1:64014166-64014185 | MS.gene70627:CDS | 40.0% | |
| GAAGAAACCTCGTCTTTAGT+AGG | - | chr3.1:64014165-64014184 | None:intergenic | 40.0% | |
| GAATCATAATCCGCACAACT+TGG | - | chr3.1:64015402-64015421 | None:intergenic | 40.0% | |
| ! | AGTTGTGCGGATTATGATTC+TGG | + | chr3.1:64015402-64015421 | MS.gene70627:CDS | 40.0% |
| ! | ATCAGGGCAATATCAAGTTG+TGG | - | chr3.1:64015722-64015741 | None:intergenic | 40.0% |
| ! | CTTTGAAGAGGAGAATCATC+TGG | - | chr3.1:64014430-64014449 | None:intergenic | 40.0% |
| ! | GATACTGTGCAGGGTTATTT+TGG | + | chr3.1:64015335-64015354 | MS.gene70627:CDS | 40.0% |
| ! | GTTGTGCGGATTATGATTCT+GGG | + | chr3.1:64015403-64015422 | MS.gene70627:CDS | 40.0% |
| ! | TTGTGCGGATTATGATTCTG+GGG | + | chr3.1:64015404-64015423 | MS.gene70627:CDS | 40.0% |
| AACGGTTTCAGTCATGTCCA+TGG | + | chr3.1:64014385-64014404 | MS.gene70627:CDS | 45.0% | |
| ACGAGGTTTCTTCATGGCTT+GGG | + | chr3.1:64014172-64014191 | MS.gene70627:CDS | 45.0% | |
| ACGGTTTCAGTCATGTCCAT+GGG | + | chr3.1:64014386-64014405 | MS.gene70627:CDS | 45.0% | |
| ACTGGTGAGAATGACGTTAG+AGG | + | chr3.1:64014352-64014371 | MS.gene70627:CDS | 45.0% | |
| AGAGACAGATGCTATTCCCA+TGG | - | chr3.1:64014405-64014424 | None:intergenic | 45.0% | |
| CATCATGATCCCATTCCTCT+TGG | - | chr3.1:64014000-64014019 | None:intergenic | 45.0% | |
| TATGCTTGGTATGGAGCTAC+TGG | + | chr3.1:64014334-64014353 | MS.gene70627:CDS | 45.0% | |
| TTCACGACCTACTAAAGACG+AGG | + | chr3.1:64014155-64014174 | MS.gene70627:CDS | 45.0% | |
| TTTGCAGCGGTTGAGATTGA+AGG | + | chr3.1:64015629-64015648 | MS.gene70627:intron | 45.0% | |
| ! | ATCAAGTTGTGGCGAAACCT+TGG | - | chr3.1:64015711-64015730 | None:intergenic | 45.0% |
| ! | GAAGCTGTTTCGAAACTTCG+CGG | + | chr3.1:64014292-64014311 | MS.gene70627:CDS | 45.0% |
| ! | GAGGCATTTGATACTGTGCA+GGG | + | chr3.1:64015326-64015345 | MS.gene70627:CDS | 45.0% |
| ! | TGAGGCATTTGATACTGTGC+AGG | + | chr3.1:64015325-64015344 | MS.gene70627:CDS | 45.0% |
| GACGAGGTTTCTTCATGGCT+TGG | + | chr3.1:64014171-64014190 | MS.gene70627:CDS | 50.0% | |
| TCGTTGTCGTTGTTCTTCGC+CGG | - | chr3.1:64014086-64014105 | None:intergenic | 50.0% | |
| TGCGAGACCAACTTCACCTT+CGG | + | chr3.1:64015655-64015674 | MS.gene70627:CDS | 50.0% | |
| TGGGATCATGATGCCAGCAT+CGG | + | chr3.1:64014007-64014026 | MS.gene70627:CDS | 50.0% | |
| ! | AGTTGTGCTGTTGGCAGAGA+TGG | + | chr3.1:64015300-64015319 | MS.gene70627:CDS | 50.0% |
| !! | AAAGGCACCGAAGGTGAAGT+TGG | - | chr3.1:64015665-64015684 | None:intergenic | 50.0% |
| !! | AAAGTCGGAAAAGGCACCGA+AGG | - | chr3.1:64015674-64015693 | None:intergenic | 50.0% |
| ACCGCTTTCGCAGTCGGAAA+CGG | - | chr3.1:64014047-64014066 | None:intergenic | 55.0% | |
| ACCGTTTCCGACTGCGAAAG+CGG | + | chr3.1:64014043-64014062 | MS.gene70627:CDS | 55.0% | |
| GGAAACACCGCTTTCGCAGT+CGG | - | chr3.1:64014053-64014072 | None:intergenic | 55.0% | |
| GTGTTCTGACGCCGTTTCAC+AGG | + | chr3.1:64014240-64014259 | MS.gene70627:CDS | 55.0% | |
| TTGTCGTTGTTCTTCGCCGG+TGG | - | chr3.1:64014083-64014102 | None:intergenic | 55.0% | |
| ! | GCTGTTTCGAAACTTCGCGG+TGG | + | chr3.1:64014295-64014314 | MS.gene70627:CDS | 55.0% |
| CTGTTGGCAGAGATGGCGTG+AGG | + | chr3.1:64015307-64015326 | MS.gene70627:CDS | 60.0% | |
| GCTTTCGCAGTCGGAAACGG+TGG | - | chr3.1:64014044-64014063 | None:intergenic | 60.0% | |
| GGAGGAGTCTTCACCGATGC+TGG | - | chr3.1:64014023-64014042 | None:intergenic | 60.0% | |
| TCGAAGCCGCGCCTGTGAAA+CGG | - | chr3.1:64014254-64014273 | None:intergenic | 60.0% | |
| TCGTTGTTCTTCGCCGGTGG+TGG | - | chr3.1:64014080-64014099 | None:intergenic | 60.0% | |
| TTCGCAGTCGGAAACGGTGG+AGG | - | chr3.1:64014041-64014060 | None:intergenic | 60.0% | |
| ! | TTGTTCTTCGCCGGTGGTGG+TGG | - | chr3.1:64014077-64014096 | None:intergenic | 60.0% |
| CTGACGCCGTTTCACAGGCG+CGG | + | chr3.1:64014245-64014264 | MS.gene70627:CDS | 65.0% | |
| GGTGTTTCCGCCACCACCAC+CGG | + | chr3.1:64014064-64014083 | MS.gene70627:CDS | 65.0% | |
| !! | TTCTTCGCCGGTGGTGGTGG+CGG | - | chr3.1:64014074-64014093 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64013989 | 64015990 | 64013989 | ID=MS.gene70627 |
| chr3.1 | mRNA | 64013989 | 64015990 | 64013989 | ID=MS.gene70627.t1;Parent=MS.gene70627 |
| chr3.1 | exon | 64013989 | 64014449 | 64013989 | ID=MS.gene70627.t1.exon1;Parent=MS.gene70627.t1 |
| chr3.1 | CDS | 64013989 | 64014449 | 64013989 | ID=cds.MS.gene70627.t1;Parent=MS.gene70627.t1 |
| chr3.1 | exon | 64015293 | 64015531 | 64015293 | ID=MS.gene70627.t1.exon2;Parent=MS.gene70627.t1 |
| chr3.1 | CDS | 64015293 | 64015531 | 64015293 | ID=cds.MS.gene70627.t1;Parent=MS.gene70627.t1 |
| chr3.1 | exon | 64015636 | 64015766 | 64015636 | ID=MS.gene70627.t1.exon3;Parent=MS.gene70627.t1 |
| chr3.1 | CDS | 64015636 | 64015766 | 64015636 | ID=cds.MS.gene70627.t1;Parent=MS.gene70627.t1 |
| chr3.1 | exon | 64015874 | 64015990 | 64015874 | ID=MS.gene70627.t1.exon4;Parent=MS.gene70627.t1 |
| chr3.1 | CDS | 64015874 | 64015990 | 64015874 | ID=cds.MS.gene70627.t1;Parent=MS.gene70627.t1 |
| Gene Sequence |
| Protein sequence |
