Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71261.t1 | CAB46083.1 | 100 | 467 | 0 | 0 | 1 | 467 | 1 | 467 | 2.80E-259 | 904 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71261.t1 | Q9C968 | 50.6 | 453 | 194 | 6 | 16 | 467 | 19 | 442 | 1.3e-108 | 394.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71261.t1 | Q9XGI0 | 100.0 | 467 | 0 | 0 | 1 | 467 | 1 | 467 | 2.0e-259 | 904.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene71261 | 0.822074 | 2.88E-53 | -1.69E-46 |
| MS.gene051914 | MS.gene71261 | 0.812398 | 4.33E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene71261 | 0.831244 | 1.86E-55 | -1.69E-46 |
| MS.gene054941 | MS.gene71261 | 0.815263 | 1.01E-51 | -1.69E-46 |
| MS.gene05652 | MS.gene71261 | 0.847941 | 8.41E-60 | -1.69E-46 |
| MS.gene057669 | MS.gene71261 | 0.80225 | 6.13E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene71261 | 0.807498 | 4.91E-50 | -1.69E-46 |
| MS.gene058128 | MS.gene71261 | 0.85176 | 7.19E-61 | -1.69E-46 |
| MS.gene058853 | MS.gene71261 | 0.821334 | 4.27E-53 | -1.69E-46 |
| MS.gene059616 | MS.gene71261 | 0.817676 | 2.91E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAAATGTTACCTTTCT+TGG | 0.133114 | 4.4:+64054404 | None:intergenic |
| CTTAAATCCAACTGAAATTC+AGG | 0.218558 | 4.4:-64054995 | MS.gene71261:intron |
| TTAGATCATCAGAAGATTTC+AGG | 0.248087 | 4.4:-64054716 | MS.gene71261:CDS |
| TTCTTGCGGATGGCGGTTAA+AGG | 0.248838 | 4.4:+64052462 | None:intergenic |
| TGCTTCTGATTCTGAGTTCC+TGG | 0.256521 | 4.4:+64055135 | None:intergenic |
| AGGTAACATTTCTGAACTTT+TGG | 0.265548 | 4.4:-64054397 | MS.gene71261:CDS |
| CTTAAACTTCCTTCCTTCTA+TGG | 0.274701 | 4.4:-64052736 | MS.gene71261:CDS |
| TTTCAGGTGCTTAGATGATT+TGG | 0.298761 | 4.4:-64054700 | MS.gene71261:CDS |
| TCCAAGCATGCGTGCGATAC+TGG | 0.334324 | 4.4:-64054005 | MS.gene71261:CDS |
| TGTACTGTTTCCATGAAGTT+AGG | 0.339878 | 4.4:+64054040 | None:intergenic |
| TGGTTGGAACTCATCCTAAA+AGG | 0.354683 | 4.4:+64054666 | None:intergenic |
| CAAATCTGATGCTTTGTAAG+AGG | 0.356045 | 4.4:+64052539 | None:intergenic |
| CCTGGTGCTACCTCCTTCAT+TGG | 0.361989 | 4.4:+64055153 | None:intergenic |
| GAAACACCTGAGGAAAGTTT+TGG | 0.367596 | 4.4:+64053055 | None:intergenic |
| GCGTCTATGTCAGCGACATC+TGG | 0.374347 | 4.4:+64054360 | None:intergenic |
| TAGCATTGAGTTGGAGTACT+TGG | 0.388611 | 4.4:-64052799 | MS.gene71261:CDS |
| GAAGATGCAGCGACCATAGA+AGG | 0.394096 | 4.4:+64052723 | None:intergenic |
| GAACTAACACTGATGAACTA+TGG | 0.399485 | 4.4:-64052762 | MS.gene71261:CDS |
| TCACTGTATATCTCATTGAT+TGG | 0.404894 | 4.4:-64053655 | MS.gene71261:CDS |
| TGATTGACAGGTAGTAAAAC+TGG | 0.408227 | 4.4:-64053126 | MS.gene71261:intron |
| AAGGCCTTATCCTAACTTCA+TGG | 0.409072 | 4.4:-64054050 | MS.gene71261:CDS |
| CAAATTGTTGCAGCCAAGAA+AGG | 0.441666 | 4.4:-64054417 | MS.gene71261:CDS |
| ACCAGTATCGCACGCATGCT+TGG | 0.449229 | 4.4:+64054004 | None:intergenic |
| GGAACCTCATTTGAAACATC+AGG | 0.452258 | 4.4:+64054804 | None:intergenic |
| GCTGTGGCTTTAAGTACATC+TGG | 0.460174 | 4.4:-64055186 | MS.gene71261:CDS |
| TCTTGCGGATGGCGGTTAAA+GGG | 0.462277 | 4.4:+64052463 | None:intergenic |
| CTCAAAACCGGTGAGTTCAA+TGG | 0.463382 | 4.4:-64054748 | MS.gene71261:CDS |
| GTTTCCATGAAGTTAGGATA+AGG | 0.469825 | 4.4:+64054046 | None:intergenic |
| TTTGAAACATCAGGTTGAGC+AGG | 0.471682 | 4.4:+64054813 | None:intergenic |
| GAGCAGATATTCGAGATGTC+TGG | 0.487371 | 4.4:+64054613 | None:intergenic |
| AAGAGTGTCACTCTGAAAGC+TGG | 0.489355 | 4.4:-64055240 | MS.gene71261:CDS |
| CGCATTTCCATTGAACTCAC+CGG | 0.493862 | 4.4:+64054741 | None:intergenic |
| AAGAGAGAGACTTCAGCTGC+TGG | 0.496709 | 4.4:-64053609 | MS.gene71261:CDS |
| CATATCTTCCTCATGAAATG+AGG | 0.504019 | 4.4:-64055071 | MS.gene71261:CDS |
| GAGGCATACTGTTCAAGAGT+TGG | 0.504331 | 4.4:+64052558 | None:intergenic |
| TCAACCTGATGTTTCAAATG+AGG | 0.507462 | 4.4:-64054808 | MS.gene71261:CDS |
| TGCGTGCGATACTGGTTGAT+TGG | 0.508489 | 4.4:-64053997 | MS.gene71261:CDS |
| TATGCAACCTGAATTTCAGT+TGG | 0.513953 | 4.4:+64054988 | None:intergenic |
| AATTCATGTTCAGGTTTCTG+AGG | 0.514222 | 4.4:-64053708 | MS.gene71261:intron |
| GGTGCTACCTCCTTCATTGG+TGG | 0.514272 | 4.4:+64055156 | None:intergenic |
| GGAGTACTTGGCAAATTACC+TGG | 0.519674 | 4.4:-64052787 | MS.gene71261:CDS |
| ATTGTTTGTGCCACTCTGGT+TGG | 0.520011 | 4.4:+64054650 | None:intergenic |
| ATGTTTGCCAGGCTAAGAAA+AGG | 0.526676 | 4.4:-64054848 | MS.gene71261:intron |
| GATTATTGTTTGTGCCACTC+TGG | 0.531908 | 4.4:+64054646 | None:intergenic |
| AGCAAATAGTTGATATGAAG+AGG | 0.537833 | 4.4:+64053085 | None:intergenic |
| TGGACAGTTACCACCAATGA+AGG | 0.540275 | 4.4:-64055166 | MS.gene71261:CDS |
| CGAGCACGAGTCAATCGACT+TGG | 0.540414 | 4.4:+64055210 | None:intergenic |
| GTTCATAGCTGACTCAAAAC+CGG | 0.542331 | 4.4:-64054760 | MS.gene71261:CDS |
| TCATCAGTGTTAGTTCAGCC+AGG | 0.544691 | 4.4:+64052769 | None:intergenic |
| TTGTGTGTACTTCTTGCGGA+TGG | 0.546451 | 4.4:+64052452 | None:intergenic |
| ATTGCGGCGAAAATACAAAC+AGG | 0.547104 | 4.4:-64055023 | MS.gene71261:CDS |
| GCAGAGGCCTAGCATTGAGT+TGG | 0.548505 | 4.4:-64052808 | MS.gene71261:intron |
| CCAATGAAGGAGGTAGCACC+AGG | 0.548598 | 4.4:-64055153 | MS.gene71261:CDS |
| CTACTACCAAAACTTTCCTC+AGG | 0.552988 | 4.4:-64053061 | MS.gene71261:intron |
| ATTCATGTTCAGGTTTCTGA+GGG | 0.554200 | 4.4:-64053707 | MS.gene71261:intron |
| CTTCCGTGTTTCTTGCACGA+TGG | 0.556981 | 4.4:-64052704 | MS.gene71261:CDS |
| GGTGGTCGCTCAGCAGCTGA+TGG | 0.558126 | 4.4:+64054783 | None:intergenic |
| TAGATCAGTCAAGCCACCCA+TGG | 0.558247 | 4.4:-64052677 | MS.gene71261:CDS |
| AAGTACTCCAACTCAATGCT+AGG | 0.564248 | 4.4:+64052801 | None:intergenic |
| GGATAACACATACGTAAAAG+AGG | 0.568506 | 4.4:-64053423 | MS.gene71261:CDS |
| CATATATATCAGCAGCATAG+TGG | 0.569484 | 4.4:+64054310 | None:intergenic |
| TGTCTTGTGTGTACTTCTTG+CGG | 0.570627 | 4.4:+64052448 | None:intergenic |
| AGAGAGAGACTTCAGCTGCT+GGG | 0.571332 | 4.4:-64053608 | MS.gene71261:CDS |
| ACTGGTTGATTGGCTTGTTG+AGG | 0.576476 | 4.4:-64053987 | MS.gene71261:intron |
| AGCGGCACAAGCTTCCTACA+AGG | 0.577919 | 4.4:-64052923 | MS.gene71261:intron |
| ATTGACTCGTGCTCGAGCTG+TGG | 0.579601 | 4.4:-64055202 | MS.gene71261:CDS |
| ATATCTTCCTCATGAAATGA+GGG | 0.590347 | 4.4:-64055070 | MS.gene71261:CDS |
| GCATAGTGGCTGCATAGTTG+AGG | 0.597253 | 4.4:+64054324 | None:intergenic |
| TTGTAGGAGGTTTCTTCGAG+CGG | 0.597311 | 4.4:-64052941 | MS.gene71261:intron |
| TGACCACTTGCGTGTTGCTG+AGG | 0.600917 | 4.4:-64054289 | MS.gene71261:intron |
| TGAAGACTTCTGCTTCATCA+CGG | 0.603644 | 4.4:-64053444 | MS.gene71261:CDS |
| TGTGTACTTCTTGCGGATGG+CGG | 0.608917 | 4.4:+64052455 | None:intergenic |
| ATGCAGCGACCATAGAAGGA+AGG | 0.622018 | 4.4:+64052727 | None:intergenic |
| AGATCAGTCAAGCCACCCAT+GGG | 0.623354 | 4.4:-64052676 | MS.gene71261:intron |
| AGACATCTCGAATATCTGCT+CGG | 0.624360 | 4.4:-64054611 | MS.gene71261:CDS |
| AGAATTGCCCTCATTTCATG+AGG | 0.626975 | 4.4:+64055063 | None:intergenic |
| CAAGAAGTACACACAAGACA+AGG | 0.627309 | 4.4:-64052445 | None:intergenic |
| CGGTGAGTTCAATGGAAATG+CGG | 0.632380 | 4.4:-64054740 | MS.gene71261:CDS |
| TGTCCATCGTGCAAGAAACA+CGG | 0.632857 | 4.4:+64052701 | None:intergenic |
| AGCAGAAGTCTTCAATACGA+GGG | 0.635042 | 4.4:+64053453 | None:intergenic |
| CAAGATGTCACTAACAATTG+CGG | 0.646916 | 4.4:-64055039 | MS.gene71261:CDS |
| AAACCTCAGCAACACGCAAG+TGG | 0.651996 | 4.4:+64054286 | None:intergenic |
| CCAGGCTAAGAAAAGGAAGG+TGG | 0.660180 | 4.4:-64054841 | MS.gene71261:intron |
| AAGCAGAAGTCTTCAATACG+AGG | 0.666457 | 4.4:+64053452 | None:intergenic |
| GCAGAAGTCTTCAATACGAG+GGG | 0.667503 | 4.4:+64053454 | None:intergenic |
| TTTGAGTCAGCTATGAACGG+TGG | 0.674912 | 4.4:+64054765 | None:intergenic |
| AGGATGAGTTCCAACCAGAG+TGG | 0.678417 | 4.4:-64054660 | MS.gene71261:CDS |
| GAAAAGAACTAACCCATGGG+TGG | 0.679908 | 4.4:+64052664 | None:intergenic |
| TAACACATACGTAAAAGAGG+AGG | 0.680647 | 4.4:-64053420 | MS.gene71261:intron |
| TTGCCAGGCTAAGAAAAGGA+AGG | 0.684325 | 4.4:-64054844 | MS.gene71261:intron |
| ACAGTTACCACCAATGAAGG+AGG | 0.688615 | 4.4:-64055163 | MS.gene71261:CDS |
| AATCAATGAGATATACAGTG+AGG | 0.713603 | 4.4:+64053657 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAGAAGTAGAAATTA+AGG | + | chr4.4:64055100-64055119 | None:intergenic | 20.0% |
| !! | AACTAATATAATACACATCT+AGG | + | chr4.4:64053928-64053947 | None:intergenic | 20.0% |
| !! | TAGTCATTAGATTTCATTTA+GGG | - | chr4.4:64054448-64054467 | MS.gene71261:intron | 20.0% |
| !! | TTTATAAAATGCATGCTAAT+CGG | - | chr4.4:64053495-64053514 | MS.gene71261:intron | 20.0% |
| !! | TTTCTTTGAGTAATTTCATA+TGG | + | chr4.4:64055071-64055090 | None:intergenic | 20.0% |
| !!! | ATAAATGACTTTTAGTTAGT+TGG | - | chr4.4:64053210-64053229 | MS.gene71261:intron | 20.0% |
| ! | AAACAAGAACCATTTGATAT+TGG | + | chr4.4:64052735-64052754 | None:intergenic | 25.0% |
| ! | AAATGAAATCTAATGACTAG+AGG | + | chr4.4:64054447-64054466 | None:intergenic | 25.0% |
| ! | AACAACTTACTTAGCATAAA+AGG | + | chr4.4:64053593-64053612 | None:intergenic | 25.0% |
| ! | ATAAAGTTCATAACTATGTG+CGG | + | chr4.4:64053480-64053499 | None:intergenic | 25.0% |
| ! | ATGAGCATTACTAAACATAA+TGG | + | chr4.4:64054174-64054193 | None:intergenic | 25.0% |
| ! | CAATTATCTTAGTACATTCT+TGG | - | chr4.4:64054728-64054747 | MS.gene71261:CDS | 25.0% |
| ! | CTAGTCATTAGATTTCATTT+AGG | - | chr4.4:64054447-64054466 | MS.gene71261:intron | 25.0% |
| ! | TGCATATATCCAATATCAAA+TGG | - | chr4.4:64052723-64052742 | MS.gene71261:CDS | 25.0% |
| ! | TTTGAGTAATTTCATATGGA+AGG | + | chr4.4:64055067-64055086 | None:intergenic | 25.0% |
| ! | TTTGTCTTGAAATGTATTGA+AGG | - | chr4.4:64052754-64052773 | MS.gene71261:CDS | 25.0% |
| !! | CTCTCTTTCAATACAATTTT+TGG | + | chr4.4:64054072-64054091 | None:intergenic | 25.0% |
| !! | TCTTGAACAGATTTCTTTTA+TGG | + | chr4.4:64053180-64053199 | None:intergenic | 25.0% |
| !! | TGATTAATACTAAAGTACCA+AGG | - | chr4.4:64054337-64054356 | MS.gene71261:CDS | 25.0% |
| !! | TTTCATTTAGGGTCTTAAAA+AGG | - | chr4.4:64054459-64054478 | MS.gene71261:intron | 25.0% |
| !! | TTTTTGTAAAGACTACTGAA+CGG | + | chr4.4:64054683-64054702 | None:intergenic | 25.0% |
| !!! | AACTTAGTTGTGGTTATTTT+TGG | - | chr4.4:64053243-64053262 | MS.gene71261:intron | 25.0% |
| AAAGAAAAGAACTAACCCAT+GGG | + | chr4.4:64055036-64055055 | None:intergenic | 30.0% | |
| AAGGATTCATATCTCAATAG+TGG | - | chr4.4:64052773-64052792 | MS.gene71261:CDS | 30.0% | |
| AATCAATGAGATATACAGTG+AGG | + | chr4.4:64054040-64054059 | None:intergenic | 30.0% | |
| ACAATGTACTACACAAATAG+AGG | + | chr4.4:64053136-64053155 | None:intergenic | 30.0% | |
| AGTAATGCTCAATACAAATC+TGG | + | chr4.4:64054840-64054859 | None:intergenic | 30.0% | |
| ATATCTTCCTCATGAAATGA+GGG | - | chr4.4:64052624-64052643 | MS.gene71261:intron | 30.0% | |
| CAATTGAATAAAACATGCAG+AGG | - | chr4.4:64054870-64054889 | MS.gene71261:intron | 30.0% | |
| CTGAAAGTAGCAATTTCATA+TGG | - | chr4.4:64054376-64054395 | MS.gene71261:CDS | 30.0% | |
| CTTAAATCCAACTGAAATTC+AGG | - | chr4.4:64052699-64052718 | MS.gene71261:CDS | 30.0% | |
| TCACTGTATATCTCATTGAT+TGG | - | chr4.4:64054039-64054058 | MS.gene71261:CDS | 30.0% | |
| TCATATTGTTCAGCTAAACT+TGG | + | chr4.4:64053785-64053804 | None:intergenic | 30.0% | |
| TGAACATGAATTCAACACAT+GGG | + | chr4.4:64053978-64053997 | None:intergenic | 30.0% | |
| TGTACTAAGATAATTGCAAG+AGG | + | chr4.4:64054724-64054743 | None:intergenic | 30.0% | |
| TTAGATCATCAGAAGATTTC+AGG | - | chr4.4:64052978-64052997 | MS.gene71261:intron | 30.0% | |
| TTCAGAAATGTTACCTTTCT+TGG | + | chr4.4:64053293-64053312 | None:intergenic | 30.0% | |
| ! | AGCAAATAGTTGATATGAAG+AGG | + | chr4.4:64054612-64054631 | None:intergenic | 30.0% |
| ! | AGGTAACATTTCTGAACTTT+TGG | - | chr4.4:64053297-64053316 | MS.gene71261:intron | 30.0% |
| ! | TAAACATAATGGAACACAAG+AGG | + | chr4.4:64054163-64054182 | None:intergenic | 30.0% |
| ! | TGAAACTGCTCTTTTTGAAT+TGG | + | chr4.4:64052596-64052615 | None:intergenic | 30.0% |
| !! | CTCTGCATGTTTTATTCAAT+TGG | + | chr4.4:64054872-64054891 | None:intergenic | 30.0% |
| !! | TACTCAATGTATTGATTGAC+AGG | - | chr4.4:64054556-64054575 | MS.gene71261:intron | 30.0% |
| !! | TCTTTTTGAATTGGCTCTTA+GGG | + | chr4.4:64052587-64052606 | None:intergenic | 30.0% |
| !! | TTCATATCTCAATAGTGGAT+AGG | - | chr4.4:64052778-64052797 | MS.gene71261:CDS | 30.0% |
| !!! | TAGTACATTCTTGGTTTTGT+AGG | - | chr4.4:64054737-64054756 | MS.gene71261:CDS | 30.0% |
| !!! | TTTGCTGTTTTGTAAGTATG+TGG | - | chr4.4:64054507-64054526 | MS.gene71261:intron | 30.0% |
| ACAAGGTAAAAAGATCGATC+TGG | - | chr4.4:64054788-64054807 | MS.gene71261:CDS | 35.0% | |
| CAAATCTGATGCTTTGTAAG+AGG | + | chr4.4:64055158-64055177 | None:intergenic | 35.0% | |
| CAAGATGTCACTAACAATTG+CGG | - | chr4.4:64052655-64052674 | MS.gene71261:intron | 35.0% | |
| CAAGGTAAAAAGATCGATCT+GGG | - | chr4.4:64054789-64054808 | MS.gene71261:CDS | 35.0% | |
| CACGTAAGTTCTCAACTTAA+TGG | - | chr4.4:64054130-64054149 | MS.gene71261:intron | 35.0% | |
| CATATATATCAGCAGCATAG+TGG | + | chr4.4:64053387-64053406 | None:intergenic | 35.0% | |
| CATATCTTCCTCATGAAATG+AGG | - | chr4.4:64052623-64052642 | MS.gene71261:intron | 35.0% | |
| CATGTGTTGAATTCATGTTC+AGG | - | chr4.4:64053977-64053996 | MS.gene71261:intron | 35.0% | |
| CTGAACATGAATTCAACACA+TGG | + | chr4.4:64053979-64053998 | None:intergenic | 35.0% | |
| CTTAAACTTCCTTCCTTCTA+TGG | - | chr4.4:64054958-64054977 | MS.gene71261:intron | 35.0% | |
| GAAAGAAAAGAACTAACCCA+TGG | + | chr4.4:64055037-64055056 | None:intergenic | 35.0% | |
| GAACTAACACTGATGAACTA+TGG | - | chr4.4:64054932-64054951 | MS.gene71261:intron | 35.0% | |
| GGATAACACATACGTAAAAG+AGG | - | chr4.4:64054271-64054290 | MS.gene71261:intron | 35.0% | |
| GTTCTCAACTTAATGGAAGT+TGG | - | chr4.4:64054137-64054156 | MS.gene71261:intron | 35.0% | |
| GTTTCCATGAAGTTAGGATA+AGG | + | chr4.4:64053651-64053670 | None:intergenic | 35.0% | |
| TAACACATACGTAAAAGAGG+AGG | - | chr4.4:64054274-64054293 | MS.gene71261:intron | 35.0% | |
| TATGCAACCTGAATTTCAGT+TGG | + | chr4.4:64052709-64052728 | None:intergenic | 35.0% | |
| TATGTGCGGTAAAGCAATAT+TGG | + | chr4.4:64053466-64053485 | None:intergenic | 35.0% | |
| TCAACCTGATGTTTCAAATG+AGG | - | chr4.4:64052886-64052905 | MS.gene71261:intron | 35.0% | |
| TGATTGACAGGTAGTAAAAC+TGG | - | chr4.4:64054568-64054587 | MS.gene71261:intron | 35.0% | |
| TGTACTGTTTCCATGAAGTT+AGG | + | chr4.4:64053657-64053676 | None:intergenic | 35.0% | |
| ! | AATTCATGTTCAGGTTTCTG+AGG | - | chr4.4:64053986-64054005 | MS.gene71261:intron | 35.0% |
| ! | ATTCATGTTCAGGTTTCTGA+GGG | - | chr4.4:64053987-64054006 | MS.gene71261:intron | 35.0% |
| ! | GATCGATCTTTTTACCTTGT+AGG | + | chr4.4:64054788-64054807 | None:intergenic | 35.0% |
| ! | TTTCAGGTGCTTAGATGATT+TGG | - | chr4.4:64052994-64053013 | MS.gene71261:intron | 35.0% |
| !! | CATTAAGTTGAGAACTTACG+TGG | + | chr4.4:64054132-64054151 | None:intergenic | 35.0% |
| !! | CTCTTTTTGAATTGGCTCTT+AGG | + | chr4.4:64052588-64052607 | None:intergenic | 35.0% |
| !! | CTTTTTGAATTGGCTCTTAG+GGG | + | chr4.4:64052586-64052605 | None:intergenic | 35.0% |
| !! | GTTTTGATGTATGCTTTCCT+TGG | + | chr4.4:64054357-64054376 | None:intergenic | 35.0% |
| !!! | ACTTTTAGTTAGTTGGTGAC+TGG | - | chr4.4:64053217-64053236 | MS.gene71261:intron | 35.0% |
| !!! | CATTTTTTCAGCTGTCAAGA+AGG | - | chr4.4:64053625-64053644 | MS.gene71261:CDS | 35.0% |
| !!! | CTGTTACTTTTATGTTTGCC+AGG | - | chr4.4:64052835-64052854 | MS.gene71261:intron | 35.0% |
| !!! | CTTTTGAGTTCTCAGAAGAA+AGG | - | chr4.4:64053106-64053125 | MS.gene71261:CDS | 35.0% |
| !!! | TACATTCTTGGTTTTGTAGG+AGG | - | chr4.4:64054740-64054759 | MS.gene71261:CDS | 35.0% |
| AAGCAGAAGTCTTCAATACG+AGG | + | chr4.4:64054245-64054264 | None:intergenic | 40.0% | |
| AAGTACTCCAACTCAATGCT+AGG | + | chr4.4:64054896-64054915 | None:intergenic | 40.0% | |
| AAGTTGACAAGAAACACCTG+AGG | + | chr4.4:64054652-64054671 | None:intergenic | 40.0% | |
| AGAATTGCCCTCATTTCATG+AGG | + | chr4.4:64052634-64052653 | None:intergenic | 40.0% | |
| AGACATCTCGAATATCTGCT+CGG | - | chr4.4:64053083-64053102 | MS.gene71261:CDS | 40.0% | |
| AGCAGAAGTCTTCAATACGA+GGG | + | chr4.4:64054244-64054263 | None:intergenic | 40.0% | |
| ATGTTTGCCAGGCTAAGAAA+AGG | - | chr4.4:64052846-64052865 | MS.gene71261:intron | 40.0% | |
| ATTGCGGCGAAAATACAAAC+AGG | - | chr4.4:64052671-64052690 | MS.gene71261:intron | 40.0% | |
| CAAATTGTTGCAGCCAAGAA+AGG | - | chr4.4:64053277-64053296 | MS.gene71261:intron | 40.0% | |
| CTACTACCAAAACTTTCCTC+AGG | - | chr4.4:64054633-64054652 | MS.gene71261:CDS | 40.0% | |
| TGAAGACTTCTGCTTCATCA+CGG | - | chr4.4:64054250-64054269 | MS.gene71261:intron | 40.0% | |
| TGACTGGTGTAACTTAGTTG+TGG | - | chr4.4:64053233-64053252 | MS.gene71261:intron | 40.0% | |
| TGGTAGAGACAATAGTGACA+GGG | + | chr4.4:64053446-64053465 | None:intergenic | 40.0% | |
| TGGTTGGAACTCATCCTAAA+AGG | + | chr4.4:64053031-64053050 | None:intergenic | 40.0% | |
| TGTCTTGTGTGTACTTCTTG+CGG | + | chr4.4:64055249-64055268 | None:intergenic | 40.0% | |
| TTGGTAGAGACAATAGTGAC+AGG | + | chr4.4:64053447-64053466 | None:intergenic | 40.0% | |
| ! | AAGGCCTTATCCTAACTTCA+TGG | - | chr4.4:64053644-64053663 | MS.gene71261:CDS | 40.0% |
| ! | GAAACACCTGAGGAAAGTTT+TGG | + | chr4.4:64054642-64054661 | None:intergenic | 40.0% |
| ! | GATTATTGTTTGTGCCACTC+TGG | + | chr4.4:64053051-64053070 | None:intergenic | 40.0% |
| ! | GGAACCTCATTTGAAACATC+AGG | + | chr4.4:64052893-64052912 | None:intergenic | 40.0% |
| ! | GTTCATAGCTGACTCAAAAC+CGG | - | chr4.4:64052934-64052953 | MS.gene71261:CDS | 40.0% |
| ! | TGGAAGACAATGCACCTTTT+AGG | - | chr4.4:64053014-64053033 | MS.gene71261:intron | 40.0% |
| !! | CTGAGGAAAGTTTTGGTAGT+AGG | + | chr4.4:64054635-64054654 | None:intergenic | 40.0% |
| !! | TAGCATTGAGTTGGAGTACT+TGG | - | chr4.4:64054895-64054914 | MS.gene71261:intron | 40.0% |
| !! | TTTGAAACATCAGGTTGAGC+AGG | + | chr4.4:64052884-64052903 | None:intergenic | 40.0% |
| !!! | GGTTTTGAGTCAGCTATGAA+CGG | + | chr4.4:64052935-64052954 | None:intergenic | 40.0% |
| ACAGTTACCACCAATGAAGG+AGG | - | chr4.4:64052531-64052550 | MS.gene71261:CDS | 45.0% | |
| CGCATTTCCATTGAACTCAC+CGG | + | chr4.4:64052956-64052975 | None:intergenic | 45.0% | |
| CGGTGAGTTCAATGGAAATG+CGG | - | chr4.4:64052954-64052973 | MS.gene71261:intron | 45.0% | |
| CTCAAAACCGGTGAGTTCAA+TGG | - | chr4.4:64052946-64052965 | MS.gene71261:intron | 45.0% | |
| GAAAAGAACTAACCCATGGG+TGG | + | chr4.4:64055033-64055052 | None:intergenic | 45.0% | |
| GAGCAGATATTCGAGATGTC+TGG | + | chr4.4:64053084-64053103 | None:intergenic | 45.0% | |
| GAGGCATACTGTTCAAGAGT+TGG | + | chr4.4:64055139-64055158 | None:intergenic | 45.0% | |
| GCAGAAGTCTTCAATACGAG+GGG | + | chr4.4:64054243-64054262 | None:intergenic | 45.0% | |
| TCATCAGTGTTAGTTCAGCC+AGG | + | chr4.4:64054928-64054947 | None:intergenic | 45.0% | |
| TGCTTCTGATTCTGAGTTCC+TGG | + | chr4.4:64052562-64052581 | None:intergenic | 45.0% | |
| TGGACAGTTACCACCAATGA+AGG | - | chr4.4:64052528-64052547 | MS.gene71261:CDS | 45.0% | |
| TGTCCATCGTGCAAGAAACA+CGG | + | chr4.4:64054996-64055015 | None:intergenic | 45.0% | |
| TTGCCAGGCTAAGAAAAGGA+AGG | - | chr4.4:64052850-64052869 | MS.gene71261:intron | 45.0% | |
| TTGTAGGAGGTTTCTTCGAG+CGG | - | chr4.4:64054753-64054772 | MS.gene71261:CDS | 45.0% | |
| TTGTGTGTACTTCTTGCGGA+TGG | + | chr4.4:64055245-64055264 | None:intergenic | 45.0% | |
| TTTGAGTCAGCTATGAACGG+TGG | + | chr4.4:64052932-64052951 | None:intergenic | 45.0% | |
| ! | ATTGTTTGTGCCACTCTGGT+TGG | + | chr4.4:64053047-64053066 | None:intergenic | 45.0% |
| ! | GGAGTACTTGGCAAATTACC+TGG | - | chr4.4:64054907-64054926 | MS.gene71261:intron | 45.0% |
| !! | AAGAGTGTCACTCTGAAAGC+TGG | - | chr4.4:64052454-64052473 | MS.gene71261:CDS | 45.0% |
| !! | ACTGGTTGATTGGCTTGTTG+AGG | - | chr4.4:64053707-64053726 | MS.gene71261:intron | 45.0% |
| !! | GCTGTGGCTTTAAGTACATC+TGG | - | chr4.4:64052508-64052527 | MS.gene71261:CDS | 45.0% |
| AAACCTCAGCAACACGCAAG+TGG | + | chr4.4:64053411-64053430 | None:intergenic | 50.0% | |
| AAGAGAGAGACTTCAGCTGC+TGG | - | chr4.4:64054085-64054104 | MS.gene71261:intron | 50.0% | |
| AGAGAGAGACTTCAGCTGCT+GGG | - | chr4.4:64054086-64054105 | MS.gene71261:intron | 50.0% | |
| AGATCAGTCAAGCCACCCAT+GGG | - | chr4.4:64055018-64055037 | MS.gene71261:CDS | 50.0% | |
| AGGATGAGTTCCAACCAGAG+TGG | - | chr4.4:64053034-64053053 | MS.gene71261:intron | 50.0% | |
| ATGCAGCGACCATAGAAGGA+AGG | + | chr4.4:64054970-64054989 | None:intergenic | 50.0% | |
| CCAGGCTAAGAAAAGGAAGG+TGG | - | chr4.4:64052853-64052872 | MS.gene71261:intron | 50.0% | |
| CTTCCGTGTTTCTTGCACGA+TGG | - | chr4.4:64054990-64055009 | MS.gene71261:intron | 50.0% | |
| GAAGATGCAGCGACCATAGA+AGG | + | chr4.4:64054974-64054993 | None:intergenic | 50.0% | |
| GCATAGTGGCTGCATAGTTG+AGG | + | chr4.4:64053373-64053392 | None:intergenic | 50.0% | |
| TAGATCAGTCAAGCCACCCA+TGG | - | chr4.4:64055017-64055036 | MS.gene71261:CDS | 50.0% | |
| TGTGTACTTCTTGCGGATGG+CGG | + | chr4.4:64055242-64055261 | None:intergenic | 50.0% | |
| ! | CCACCTTCCTTTTCTTAGCC+TGG | + | chr4.4:64052856-64052875 | None:intergenic | 50.0% |
| ! | TCTTGCGGATGGCGGTTAAA+GGG | + | chr4.4:64055234-64055253 | None:intergenic | 50.0% |
| ! | TGCGTGCGATACTGGTTGAT+TGG | - | chr4.4:64053697-64053716 | MS.gene71261:CDS | 50.0% |
| ! | TTCTTGCGGATGGCGGTTAA+AGG | + | chr4.4:64055235-64055254 | None:intergenic | 50.0% |
| ACCAGTATCGCACGCATGCT+TGG | + | chr4.4:64053693-64053712 | None:intergenic | 55.0% | |
| AGCGGCACAAGCTTCCTACA+AGG | - | chr4.4:64054771-64054790 | MS.gene71261:CDS | 55.0% | |
| CCAATGAAGGAGGTAGCACC+AGG | - | chr4.4:64052541-64052560 | MS.gene71261:CDS | 55.0% | |
| CGAGCACGAGTCAATCGACT+TGG | + | chr4.4:64052487-64052506 | None:intergenic | 55.0% | |
| GCGTCTATGTCAGCGACATC+TGG | + | chr4.4:64053337-64053356 | None:intergenic | 55.0% | |
| TCCAAGCATGCGTGCGATAC+TGG | - | chr4.4:64053689-64053708 | MS.gene71261:CDS | 55.0% | |
| ! | GCAGAGGCCTAGCATTGAGT+TGG | - | chr4.4:64054886-64054905 | MS.gene71261:intron | 55.0% |
| ! | GGTGCTACCTCCTTCATTGG+TGG | + | chr4.4:64052541-64052560 | None:intergenic | 55.0% |
| ! | TGACCACTTGCGTGTTGCTG+AGG | - | chr4.4:64053405-64053424 | MS.gene71261:intron | 55.0% |
| !! | ATTGACTCGTGCTCGAGCTG+TGG | - | chr4.4:64052492-64052511 | MS.gene71261:CDS | 55.0% |
| !! | CCTGGTGCTACCTCCTTCAT+TGG | + | chr4.4:64052544-64052563 | None:intergenic | 55.0% |
| GGTGGTCGCTCAGCAGCTGA+TGG | + | chr4.4:64052914-64052933 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 64052446 | 64055270 | 64052446 | ID=MS.gene71261 |
| chr4.4 | mRNA | 64052446 | 64055270 | 64052446 | ID=MS.gene71261.t1;Parent=MS.gene71261 |
| chr4.4 | exon | 64054996 | 64055270 | 64054996 | ID=MS.gene71261.t1.exon1;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64054996 | 64055270 | 64054996 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| chr4.4 | exon | 64054589 | 64054859 | 64054589 | ID=MS.gene71261.t1.exon2;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64054589 | 64054859 | 64054589 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| chr4.4 | exon | 64054290 | 64054444 | 64054290 | ID=MS.gene71261.t1.exon3;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64054290 | 64054444 | 64054290 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| chr4.4 | exon | 64053988 | 64054080 | 64053988 | ID=MS.gene71261.t1.exon4;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64053988 | 64054080 | 64053988 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| chr4.4 | exon | 64053584 | 64053717 | 64053584 | ID=MS.gene71261.t1.exon5;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64053584 | 64053717 | 64053584 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| chr4.4 | exon | 64053421 | 64053496 | 64053421 | ID=MS.gene71261.t1.exon6;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64053421 | 64053496 | 64053421 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| chr4.4 | exon | 64053062 | 64053138 | 64053062 | ID=MS.gene71261.t1.exon7;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64053062 | 64053138 | 64053062 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| chr4.4 | exon | 64052924 | 64052957 | 64052924 | ID=MS.gene71261.t1.exon8;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64052924 | 64052957 | 64052924 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| chr4.4 | exon | 64052677 | 64052826 | 64052677 | ID=MS.gene71261.t1.exon9;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64052677 | 64052826 | 64052677 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| chr4.4 | exon | 64052446 | 64052583 | 64052446 | ID=MS.gene71261.t1.exon10;Parent=MS.gene71261.t1 |
| chr4.4 | CDS | 64052446 | 64052583 | 64052446 | ID=cds.MS.gene71261.t1;Parent=MS.gene71261.t1 |
| Gene Sequence |
| Protein sequence |
