Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054850.t1 | RHN47713.1 | 98.4 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 1.20E-110 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054850.t1 | O80674 | 67.4 | 178 | 54 | 3 | 57 | 232 | 49 | 224 | 4.8e-57 | 222.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054850.t1 | A0A396H4N2 | 98.4 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 8.4e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene054850.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene054850 | 0.809329 | 2.00E-50 | -1.69E-46 |
| MS.gene050707 | MS.gene054850 | 0.881041 | 3.34E-70 | -1.69E-46 |
| MS.gene052308 | MS.gene054850 | 0.806623 | 7.52E-50 | -1.69E-46 |
| MS.gene054850 | MS.gene054941 | 0.815259 | 1.01E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene05652 | 0.827383 | 1.61E-54 | -1.69E-46 |
| MS.gene054850 | MS.gene058128 | 0.846564 | 2.01E-59 | -1.69E-46 |
| MS.gene054850 | MS.gene058789 | 0.803049 | 4.20E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene058853 | 0.846636 | 1.92E-59 | -1.69E-46 |
| MS.gene054850 | MS.gene05926 | 0.825263 | 5.16E-54 | -1.69E-46 |
| MS.gene054850 | MS.gene059616 | 0.818833 | 1.60E-52 | -1.69E-46 |
| MS.gene054850 | MS.gene059717 | -0.80053 | 1.38E-48 | -1.69E-46 |
| MS.gene054850 | MS.gene059905 | 0.846242 | 2.46E-59 | -1.69E-46 |
| MS.gene054850 | MS.gene060374 | 0.808189 | 3.50E-50 | -1.69E-46 |
| MS.gene054850 | MS.gene061357 | 0.804292 | 2.32E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene063235 | 0.803124 | 4.05E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene063279 | 0.802967 | 4.36E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene063280 | 0.820559 | 6.44E-53 | -1.69E-46 |
| MS.gene054850 | MS.gene06421 | 0.815815 | 7.62E-52 | -1.69E-46 |
| MS.gene054850 | MS.gene064328 | 0.813922 | 2.00E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene064509 | 0.833003 | 6.84E-56 | -1.69E-46 |
| MS.gene054850 | MS.gene065314 | 0.844753 | 6.22E-59 | -1.69E-46 |
| MS.gene054850 | MS.gene069421 | 0.80107 | 1.07E-48 | -1.69E-46 |
| MS.gene054850 | MS.gene070726 | 0.846316 | 2.35E-59 | -1.69E-46 |
| MS.gene054850 | MS.gene071405 | 0.813105 | 3.03E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene072070 | -0.818863 | 1.57E-52 | -1.69E-46 |
| MS.gene054850 | MS.gene072366 | 0.837168 | 6.10E-57 | -1.69E-46 |
| MS.gene054850 | MS.gene074201 | 0.817645 | 2.96E-52 | -1.69E-46 |
| MS.gene054850 | MS.gene074515 | 0.842409 | 2.63E-58 | -1.69E-46 |
| MS.gene054850 | MS.gene08362 | 0.802525 | 5.38E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene20121 | -0.837363 | 5.43E-57 | -1.69E-46 |
| MS.gene054850 | MS.gene21734 | 0.826888 | 2.12E-54 | -1.69E-46 |
| MS.gene054850 | MS.gene21888 | 0.829295 | 5.58E-55 | -1.69E-46 |
| MS.gene054850 | MS.gene22759 | 0.879177 | 1.54E-69 | -1.69E-46 |
| MS.gene054850 | MS.gene24857 | -0.810953 | 8.92E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene25398 | -0.81097 | 8.84E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene25797 | 0.826207 | 3.08E-54 | -1.69E-46 |
| MS.gene054850 | MS.gene26122 | 0.823256 | 1.53E-53 | -1.69E-46 |
| MS.gene054850 | MS.gene26406 | 0.817365 | 3.43E-52 | -1.69E-46 |
| MS.gene054850 | MS.gene26901 | 0.842965 | 1.87E-58 | -1.69E-46 |
| MS.gene054850 | MS.gene27560 | 0.844539 | 7.10E-59 | -1.69E-46 |
| MS.gene054850 | MS.gene27811 | 0.813781 | 2.15E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene27812 | 0.823563 | 1.29E-53 | -1.69E-46 |
| MS.gene054850 | MS.gene28158 | -0.823915 | 1.07E-53 | -1.69E-46 |
| MS.gene054850 | MS.gene28452 | 0.841668 | 4.13E-58 | -1.69E-46 |
| MS.gene054850 | MS.gene28923 | 0.826105 | 3.26E-54 | -1.69E-46 |
| MS.gene054850 | MS.gene29939 | 0.802538 | 5.35E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene29940 | 0.812962 | 3.26E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene29942 | 0.810952 | 8.92E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene31804 | 0.803362 | 3.61E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene31917 | 0.871193 | 8.24E-67 | -1.69E-46 |
| MS.gene054850 | MS.gene31973 | 0.875557 | 2.81E-68 | -1.69E-46 |
| MS.gene054850 | MS.gene32271 | -0.81097 | 8.84E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene33809 | 0.867625 | 1.19E-65 | -1.69E-46 |
| MS.gene054850 | MS.gene35794 | 0.84919 | 3.79E-60 | -1.69E-46 |
| MS.gene054850 | MS.gene35795 | 0.848833 | 4.76E-60 | -1.69E-46 |
| MS.gene054850 | MS.gene35853 | 0.838181 | 3.35E-57 | -1.69E-46 |
| MS.gene054850 | MS.gene35931 | 0.855279 | 7.02E-62 | -1.69E-46 |
| MS.gene054850 | MS.gene36273 | 0.811332 | 7.38E-51 | -1.69E-46 |
| MS.gene054850 | MS.gene36820 | 0.819934 | 8.95E-53 | -1.69E-46 |
| MS.gene054850 | MS.gene38102 | 0.825335 | 4.96E-54 | -1.69E-46 |
| MS.gene054850 | MS.gene38166 | 0.810357 | 1.20E-50 | -1.69E-46 |
| MS.gene054850 | MS.gene39469 | 0.864059 | 1.60E-64 | -1.69E-46 |
| MS.gene054850 | MS.gene40278 | 0.850898 | 1.26E-60 | -1.69E-46 |
| MS.gene054850 | MS.gene40724 | 0.830163 | 3.43E-55 | -1.69E-46 |
| MS.gene054850 | MS.gene41190 | 0.868572 | 5.91E-66 | -1.69E-46 |
| MS.gene054850 | MS.gene51554 | 0.808574 | 2.90E-50 | -1.69E-46 |
| MS.gene054850 | MS.gene52072 | 0.843028 | 1.80E-58 | -1.69E-46 |
| MS.gene054850 | MS.gene52113 | 0.800269 | 1.56E-48 | -1.69E-46 |
| MS.gene054850 | MS.gene52363 | 0.821258 | 4.44E-53 | -1.69E-46 |
| MS.gene054850 | MS.gene52403 | 0.819046 | 1.43E-52 | -1.69E-46 |
| MS.gene054850 | MS.gene53366 | 0.804693 | 1.91E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene53408 | 0.830861 | 2.31E-55 | -1.69E-46 |
| MS.gene054850 | MS.gene54335 | 0.860661 | 1.77E-63 | -1.69E-46 |
| MS.gene054850 | MS.gene55329 | 0.801445 | 8.97E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene58849 | 0.908996 | 9.28E-82 | -1.69E-46 |
| MS.gene054850 | MS.gene61094 | 0.844579 | 6.93E-59 | -1.69E-46 |
| MS.gene054850 | MS.gene61684 | 0.823157 | 1.61E-53 | -1.69E-46 |
| MS.gene054850 | MS.gene63320 | 0.801336 | 9.45E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene63375 | 0.853859 | 1.81E-61 | -1.69E-46 |
| MS.gene054850 | MS.gene63469 | 0.804776 | 1.84E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene69722 | 0.809633 | 1.72E-50 | -1.69E-46 |
| MS.gene054850 | MS.gene71261 | 0.831244 | 1.86E-55 | -1.69E-46 |
| MS.gene054850 | MS.gene74253 | 0.829673 | 4.51E-55 | -1.69E-46 |
| MS.gene054850 | MS.gene74548 | 0.837337 | 5.52E-57 | -1.69E-46 |
| MS.gene054850 | MS.gene80899 | 0.851382 | 9.20E-61 | -1.69E-46 |
| MS.gene054850 | MS.gene82050 | -0.832353 | 9.92E-56 | -1.69E-46 |
| MS.gene054850 | MS.gene82356 | -0.835835 | 1.33E-56 | -1.69E-46 |
| MS.gene054850 | MS.gene87345 | 0.805039 | 1.62E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene90302 | 0.805788 | 1.13E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene90842 | 0.830147 | 3.46E-55 | -1.69E-46 |
| MS.gene054850 | MS.gene90899 | 0.826358 | 2.83E-54 | -1.69E-46 |
| MS.gene054850 | MS.gene91412 | 0.822007 | 2.98E-53 | -1.69E-46 |
| MS.gene054850 | MS.gene92313 | 0.836311 | 1.01E-56 | -1.69E-46 |
| MS.gene054850 | MS.gene93762 | 0.809253 | 2.07E-50 | -1.69E-46 |
| MS.gene054850 | MS.gene94553 | 0.856646 | 2.80E-62 | -1.69E-46 |
| MS.gene054850 | MS.gene94954 | 0.847713 | 9.71E-60 | -1.69E-46 |
| MS.gene054850 | MS.gene97443 | 0.8616 | 9.15E-64 | -1.69E-46 |
| MS.gene054850 | MS.gene99885 | 0.848142 | 7.40E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054850.t1 | MTR_7g089400 | 87.200 | 125 | 15 | 1 | 1 | 125 | 1 | 124 | 1.78e-74 | 223 |
| MS.gene054850.t1 | MTR_1g093750 | 49.215 | 191 | 90 | 3 | 59 | 243 | 141 | 330 | 3.96e-47 | 159 |
| MS.gene054850.t1 | MTR_3g070970 | 35.714 | 252 | 136 | 6 | 14 | 243 | 7 | 254 | 3.42e-42 | 144 |
| MS.gene054850.t1 | MTR_2g091190 | 45.810 | 179 | 90 | 3 | 71 | 243 | 54 | 231 | 4.37e-33 | 120 |
| MS.gene054850.t1 | MTR_2g015890 | 38.068 | 176 | 100 | 3 | 71 | 241 | 62 | 233 | 5.07e-30 | 113 |
| MS.gene054850.t1 | MTR_4g079760 | 42.553 | 188 | 91 | 5 | 68 | 243 | 60 | 242 | 3.49e-28 | 108 |
| MS.gene054850.t1 | MTR_2g015890 | 41.880 | 117 | 64 | 1 | 71 | 187 | 62 | 174 | 2.06e-24 | 97.4 |
| MS.gene054850.t1 | MTR_5g066080 | 38.506 | 174 | 79 | 3 | 59 | 206 | 19 | 190 | 7.14e-23 | 94.0 |
| MS.gene054850.t1 | MTR_5g032375 | 32.558 | 215 | 117 | 6 | 32 | 233 | 7 | 206 | 4.87e-22 | 90.9 |
| MS.gene054850.t1 | MTR_4g087920 | 38.415 | 164 | 96 | 4 | 70 | 230 | 69 | 230 | 1.48e-21 | 90.9 |
| MS.gene054850.t1 | MTR_2g015890 | 33.333 | 138 | 83 | 3 | 109 | 241 | 2 | 135 | 1.71e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054850.t1 | AT2G41130 | 61.187 | 219 | 79 | 5 | 18 | 233 | 10 | 225 | 1.96e-79 | 239 |
| MS.gene054850.t1 | AT3G56770 | 61.140 | 193 | 61 | 4 | 70 | 250 | 39 | 229 | 1.80e-72 | 221 |
| MS.gene054850.t1 | AT1G68810 | 45.729 | 199 | 96 | 3 | 57 | 243 | 151 | 349 | 1.06e-45 | 157 |
| MS.gene054850.t1 | AT3G25710 | 58.571 | 140 | 56 | 1 | 72 | 211 | 128 | 265 | 8.74e-44 | 151 |
| MS.gene054850.t1 | AT2G40200 | 41.579 | 190 | 94 | 4 | 71 | 245 | 58 | 245 | 1.83e-34 | 124 |
| MS.gene054850.t1 | AT4G38070 | 34.254 | 181 | 103 | 5 | 26 | 206 | 50 | 214 | 2.09e-21 | 90.5 |
Find 47 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTGTTATTTCGTCGGTTT+CGG | 0.235930 | 7.3:+20158913 | None:intergenic |
| TTTCGATTAGGTCGGGAATT+AGG | 0.256589 | 7.3:+20158813 | None:intergenic |
| CAACAGATTCAGAATAATAT+TGG | 0.265015 | 7.3:-20160270 | MS.gene054850:CDS |
| GTAATAGTTATTGTTGTTAT+CGG | 0.378138 | 7.3:+20160137 | None:intergenic |
| GAATTCACTCAGGTCTTTGT+TGG | 0.378871 | 7.3:-20158663 | MS.gene054850:CDS |
| GAGACTTGAGGATTTCGATT+AGG | 0.380801 | 7.3:+20158801 | None:intergenic |
| AACAGATTCAGAATAATATT+GGG | 0.426141 | 7.3:-20160269 | MS.gene054850:CDS |
| TGTTGCATCATAGTGCTACT+AGG | 0.431842 | 7.3:+20160177 | None:intergenic |
| GCTGAAATGGCCACACTTGG+TGG | 0.453567 | 7.3:-20158758 | MS.gene054850:CDS |
| GTCGAAAAGGCGTCGAGGGT+TGG | 0.453710 | 7.3:-20158615 | MS.gene054850:CDS |
| GTTGAGTATTCAAAGAATGA+AGG | 0.456323 | 7.3:+20160201 | None:intergenic |
| CACTCAGGTCTTTGTTGGAT+AGG | 0.462227 | 7.3:-20158658 | MS.gene054850:CDS |
| AGGAAGCTGAGAAGAGAAGA+AGG | 0.471315 | 7.3:-20160038 | MS.gene054850:CDS |
| GGCAATGACATCTCCGACGA+AGG | 0.483297 | 7.3:-20158881 | MS.gene054850:CDS |
| GTTATTTCGTCGGTTTCGGA+TGG | 0.483862 | 7.3:+20158917 | None:intergenic |
| GTAATTTCAGAAACTTCAAA+GGG | 0.483898 | 7.3:+20160111 | None:intergenic |
| TTGAGGATTTCGATTAGGTC+GGG | 0.493776 | 7.3:+20158806 | None:intergenic |
| AGTAATTTCAGAAACTTCAA+AGG | 0.496460 | 7.3:+20160110 | None:intergenic |
| CTTGAGGATTTCGATTAGGT+CGG | 0.504746 | 7.3:+20158805 | None:intergenic |
| CCTTGGAGTTGCAAGGGAGA+AGG | 0.512266 | 7.3:+20159980 | None:intergenic |
| CTTGGAGTTGCAAGGGAGAA+GGG | 0.521866 | 7.3:+20159981 | None:intergenic |
| TTCGTCGGAGATGTCATTGC+CGG | 0.522101 | 7.3:+20158883 | None:intergenic |
| TTGAGTATTCAAAGAATGAA+GGG | 0.546799 | 7.3:+20160202 | None:intergenic |
| AAAGCTGAAATGGCCACACT+TGG | 0.548268 | 7.3:-20158761 | MS.gene054850:CDS |
| CCTTCTCCCTTGCAACTCCA+AGG | 0.549041 | 7.3:-20159980 | MS.gene054850:intron |
| ATAATAACCTTGGAGTTGCA+AGG | 0.549750 | 7.3:+20159973 | None:intergenic |
| TCTTTGTTGGATAGGTCTAG+TGG | 0.556474 | 7.3:-20158650 | MS.gene054850:CDS |
| AGATATGACTGTTATTTCGT+CGG | 0.558305 | 7.3:+20158907 | None:intergenic |
| GGTCTAGTGGTTGTAACGAT+AGG | 0.565435 | 7.3:-20158637 | MS.gene054850:CDS |
| TAATAACCTTGGAGTTGCAA+GGG | 0.573577 | 7.3:+20159974 | None:intergenic |
| AAGGGAGAAGGGTACGAAGA+TGG | 0.575464 | 7.3:+20159992 | None:intergenic |
| ACGTGTTCTTCCACCAAGTG+TGG | 0.575747 | 7.3:+20158748 | None:intergenic |
| GAATATGAGTCTGCCTTCGT+CGG | 0.576237 | 7.3:+20158868 | None:intergenic |
| ATAGGTCGAAAAGGCGTCGA+GGG | 0.576982 | 7.3:-20158619 | MS.gene054850:CDS |
| AGAGCTCTATCTTGCTGAGA+GGG | 0.579252 | 7.3:+20160081 | None:intergenic |
| GTTGTAACGATAGGTCGAAA+AGG | 0.580273 | 7.3:-20158628 | MS.gene054850:CDS |
| TTTCAGAAACTTCAAAGGGG+TGG | 0.587837 | 7.3:+20160115 | None:intergenic |
| GAAATAACAGTCATATCTGC+CGG | 0.595239 | 7.3:-20158902 | MS.gene054850:CDS |
| GATTCAGAATAATATTGGGA+TGG | 0.603750 | 7.3:-20160265 | MS.gene054850:CDS |
| GGAAGCTGAGAAGAGAAGAA+GGG | 0.604105 | 7.3:-20160037 | MS.gene054850:CDS |
| GAAGGGTACGAAGATGGTCA+AGG | 0.633890 | 7.3:+20159998 | None:intergenic |
| AGCTGCTTTGAAGAATCACA+AGG | 0.645458 | 7.3:-20160058 | MS.gene054850:CDS |
| TAGAGCTCTATCTTGCTGAG+AGG | 0.647696 | 7.3:+20160080 | None:intergenic |
| ATGAAGGGTTGTTAGCAACA+AGG | 0.651347 | 7.3:+20160217 | None:intergenic |
| GATAGGTCGAAAAGGCGTCG+AGG | 0.658588 | 7.3:-20158620 | MS.gene054850:CDS |
| TGATTGATTTCAGACAGACA+AGG | 0.674472 | 7.3:-20159020 | MS.gene054850:intron |
| TAATTTCAGAAACTTCAAAG+GGG | 0.757536 | 7.3:+20160112 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTTTACCATTTA+AGG | + | chr7.3:20159454-20159473 | None:intergenic | 10.0% |
| !! | AACAGATTCAGAATAATATT+GGG | - | chr7.3:20158605-20158624 | MS.gene054850:CDS | 20.0% |
| !! | AATGATGAAAATAATAACCT+TGG | + | chr7.3:20158914-20158933 | None:intergenic | 20.0% |
| !! | AATTATTTGCAAATTAAGCT+AGG | - | chr7.3:20159478-20159497 | MS.gene054850:intron | 20.0% |
| !! | ATTATTTGCAAATTAAGCTA+GGG | - | chr7.3:20159479-20159498 | MS.gene054850:intron | 20.0% |
| !! | GATGTTCCAAAAAAAAATTA+AGG | + | chr7.3:20159262-20159281 | None:intergenic | 20.0% |
| !! | TCATTCTTAATTATTTGTCT+TGG | - | chr7.3:20158929-20158948 | MS.gene054850:CDS | 20.0% |
| !!! | CTAGATCCTTAATTTTTTTT+TGG | - | chr7.3:20159253-20159272 | MS.gene054850:intron | 20.0% |
| !!! | GCTTAATTTGCAAATAATTT+TGG | + | chr7.3:20159477-20159496 | None:intergenic | 20.0% |
| !!! | GTAATAGTTATTGTTGTTAT+CGG | + | chr7.3:20158740-20158759 | None:intergenic | 20.0% |
| !!! | TTGGATTACATATTTTTTGT+AGG | + | chr7.3:20159411-20159430 | None:intergenic | 20.0% |
| ! | AATCACTCAAAATCCTTAAA+TGG | - | chr7.3:20159438-20159457 | MS.gene054850:intron | 25.0% |
| ! | AGTAATTTCAGAAACTTCAA+AGG | + | chr7.3:20158767-20158786 | None:intergenic | 25.0% |
| ! | CAACAGATTCAGAATAATAT+TGG | - | chr7.3:20158604-20158623 | MS.gene054850:CDS | 25.0% |
| ! | CTTAATTACTAAAGTGAGAA+AGG | + | chr7.3:20159152-20159171 | None:intergenic | 25.0% |
| ! | GTAATTTCAGAAACTTCAAA+GGG | + | chr7.3:20158766-20158785 | None:intergenic | 25.0% |
| ! | TAATTTCAGAAACTTCAAAG+GGG | + | chr7.3:20158765-20158784 | None:intergenic | 25.0% |
| ! | TAGTCATGTATAAAACTTGA+TGG | + | chr7.3:20159568-20159587 | None:intergenic | 25.0% |
| ! | TTGAGTATTCAAAGAATGAA+GGG | + | chr7.3:20158675-20158694 | None:intergenic | 25.0% |
| !! | ACATGTTTTCACTCTTTTTT+TGG | + | chr7.3:20159097-20159116 | None:intergenic | 25.0% |
| !! | TCAATTTTACAAAACCTACA+AGG | - | chr7.3:20159686-20159705 | MS.gene054850:intron | 25.0% |
| !! | TTTTGTTCTTTTGTTCTCAA+AGG | - | chr7.3:20158995-20159014 | MS.gene054850:CDS | 25.0% |
| !!! | TTGTAGGTTTTGTAAAATTG+AGG | + | chr7.3:20159687-20159706 | None:intergenic | 25.0% |
| !!! | TTTTGAGTGATTAAGTTCAT+TGG | + | chr7.3:20159430-20159449 | None:intergenic | 25.0% |
| AAAAACTCTCAAAGCTGAAA+TGG | - | chr7.3:20160103-20160122 | MS.gene054850:CDS | 30.0% | |
| AAACCATTGTGATTTAGAAG+AGG | + | chr7.3:20159714-20159733 | None:intergenic | 30.0% | |
| GATTCAGAATAATATTGGGA+TGG | - | chr7.3:20158609-20158628 | MS.gene054850:CDS | 30.0% | |
| GTTGAGTATTCAAAGAATGA+AGG | + | chr7.3:20158676-20158695 | None:intergenic | 30.0% | |
| ! | ATTTTCTTCAGAATTCACTC+AGG | - | chr7.3:20160201-20160220 | MS.gene054850:CDS | 30.0% |
| ! | CTTTAGTAATTAAGTTGCCA+TGG | - | chr7.3:20159158-20159177 | MS.gene054850:intron | 30.0% |
| !! | AGATATGACTGTTATTTCGT+CGG | + | chr7.3:20159970-20159989 | None:intergenic | 30.0% |
| !!! | GTTTTCACTCTTTTTTTGGA+TGG | + | chr7.3:20159093-20159112 | None:intergenic | 30.0% |
| !!! | TTTCAGCTTTGAGAGTTTTT+AGG | + | chr7.3:20160103-20160122 | None:intergenic | 30.0% |
| ACACACACAATTATCTTTGC+TGG | + | chr7.3:20159036-20159055 | None:intergenic | 35.0% | |
| ATAATAACCTTGGAGTTGCA+AGG | + | chr7.3:20158904-20158923 | None:intergenic | 35.0% | |
| CTAGTACATGTTTGCATATG+TGG | + | chr7.3:20159749-20159768 | None:intergenic | 35.0% | |
| GAAATAACAGTCATATCTGC+CGG | - | chr7.3:20159972-20159991 | MS.gene054850:intron | 35.0% | |
| TAATAACCTTGGAGTTGCAA+GGG | + | chr7.3:20158903-20158922 | None:intergenic | 35.0% | |
| TCAATCTTGTCACAAAACCT+AGG | + | chr7.3:20159791-20159810 | None:intergenic | 35.0% | |
| TGATGAAGAAAGCAAAACCT+AGG | - | chr7.3:20159771-20159790 | MS.gene054850:intron | 35.0% | |
| ! | AGGCATATTTTCACTCATTC+TGG | + | chr7.3:20159132-20159151 | None:intergenic | 35.0% |
| ! | AGTATCGAACTCAAAACATC+CGG | + | chr7.3:20159386-20159405 | None:intergenic | 35.0% |
| ! | GTAAAGTACTACATGTTCCA+TGG | + | chr7.3:20159178-20159197 | None:intergenic | 35.0% |
| ! | TGATTGATTTCAGACAGACA+AGG | - | chr7.3:20159854-20159873 | MS.gene054850:intron | 35.0% |
| !!! | TTTTTAGGTGAAGAGACTTG+AGG | + | chr7.3:20160088-20160107 | None:intergenic | 35.0% |
| ATGAAGGGTTGTTAGCAACA+AGG | + | chr7.3:20158660-20158679 | None:intergenic | 40.0% | |
| ATTTAGAAGAGGCTCCTTGT+AGG | + | chr7.3:20159703-20159722 | None:intergenic | 40.0% | |
| CTTGAGGATTTCGATTAGGT+CGG | + | chr7.3:20160072-20160091 | None:intergenic | 40.0% | |
| GAATTCACTCAGGTCTTTGT+TGG | - | chr7.3:20160211-20160230 | MS.gene054850:CDS | 40.0% | |
| GAGACTTGAGGATTTCGATT+AGG | + | chr7.3:20160076-20160095 | None:intergenic | 40.0% | |
| GAGCCTCTTCTAAATCACAA+TGG | - | chr7.3:20159708-20159727 | MS.gene054850:intron | 40.0% | |
| GTTGTAACGATAGGTCGAAA+AGG | - | chr7.3:20160246-20160265 | MS.gene054850:CDS | 40.0% | |
| TCTTATGCGTTAAGCACAAG+TGG | - | chr7.3:20159326-20159345 | MS.gene054850:intron | 40.0% | |
| TCTTTGTTGGATAGGTCTAG+TGG | - | chr7.3:20160224-20160243 | MS.gene054850:CDS | 40.0% | |
| TTAAGCTAGGGAAGTCACTT+AGG | - | chr7.3:20159491-20159510 | MS.gene054850:intron | 40.0% | |
| TTGAGGATTTCGATTAGGTC+GGG | + | chr7.3:20160071-20160090 | None:intergenic | 40.0% | |
| TTTCAGAAACTTCAAAGGGG+TGG | + | chr7.3:20158762-20158781 | None:intergenic | 40.0% | |
| TTTCGATTAGGTCGGGAATT+AGG | + | chr7.3:20160064-20160083 | None:intergenic | 40.0% | |
| ! | AGGGAAGTCACTTAGGTTTT+AGG | - | chr7.3:20159498-20159517 | MS.gene054850:intron | 40.0% |
| ! | TAGCTTTTGCAAAATCGTGG+TGG | + | chr7.3:20159659-20159678 | None:intergenic | 40.0% |
| ! | TCGTAGCTTTTGCAAAATCG+TGG | + | chr7.3:20159662-20159681 | None:intergenic | 40.0% |
| ! | TGTCTGAAGTGGTGTATATC+CGG | - | chr7.3:20159364-20159383 | MS.gene054850:intron | 40.0% |
| ! | TGTTGCATCATAGTGCTACT+AGG | + | chr7.3:20158700-20158719 | None:intergenic | 40.0% |
| !! | AGCTGCTTTGAAGAATCACA+AGG | - | chr7.3:20158816-20158835 | MS.gene054850:CDS | 40.0% |
| !! | GACTGTTATTTCGTCGGTTT+CGG | + | chr7.3:20159964-20159983 | None:intergenic | 40.0% |
| AAAGCTGAAATGGCCACACT+TGG | - | chr7.3:20160113-20160132 | MS.gene054850:CDS | 45.0% | |
| AGAGCTCTATCTTGCTGAGA+GGG | + | chr7.3:20158796-20158815 | None:intergenic | 45.0% | |
| AGGAAGCTGAGAAGAGAAGA+AGG | - | chr7.3:20158836-20158855 | MS.gene054850:CDS | 45.0% | |
| ATGCGTTAAGCACAAGTGGT+CGG | - | chr7.3:20159330-20159349 | MS.gene054850:intron | 45.0% | |
| CACTCAGGTCTTTGTTGGAT+AGG | - | chr7.3:20160216-20160235 | MS.gene054850:CDS | 45.0% | |
| GAATATGAGTCTGCCTTCGT+CGG | + | chr7.3:20160009-20160028 | None:intergenic | 45.0% | |
| GGAAGCTGAGAAGAGAAGAA+GGG | - | chr7.3:20158837-20158856 | MS.gene054850:CDS | 45.0% | |
| GGTCTAGTGGTTGTAACGAT+AGG | - | chr7.3:20160237-20160256 | MS.gene054850:CDS | 45.0% | |
| TAGAGCTCTATCTTGCTGAG+AGG | + | chr7.3:20158797-20158816 | None:intergenic | 45.0% | |
| TGCGTAATGTGTGTCTGAAG+TGG | - | chr7.3:20159353-20159372 | MS.gene054850:intron | 45.0% | |
| !! | GTTATTTCGTCGGTTTCGGA+TGG | + | chr7.3:20159960-20159979 | None:intergenic | 45.0% |
| ACGTGTTCTTCCACCAAGTG+TGG | + | chr7.3:20160129-20160148 | None:intergenic | 50.0% | |
| CTTGGAGTTGCAAGGGAGAA+GGG | + | chr7.3:20158896-20158915 | None:intergenic | 50.0% | |
| TTCGTCGGAGATGTCATTGC+CGG | + | chr7.3:20159994-20160013 | None:intergenic | 50.0% | |
| ! | AAGGGAGAAGGGTACGAAGA+TGG | + | chr7.3:20158885-20158904 | None:intergenic | 50.0% |
| ! | GAAGGGTACGAAGATGGTCA+AGG | + | chr7.3:20158879-20158898 | None:intergenic | 50.0% |
| !! | ATAGGTCGAAAAGGCGTCGA+GGG | - | chr7.3:20160255-20160274 | MS.gene054850:CDS | 50.0% |
| CCTTCTCCCTTGCAACTCCA+AGG | - | chr7.3:20158894-20158913 | MS.gene054850:CDS | 55.0% | |
| CCTTGGAGTTGCAAGGGAGA+AGG | + | chr7.3:20158897-20158916 | None:intergenic | 55.0% | |
| GCTGAAATGGCCACACTTGG+TGG | - | chr7.3:20160116-20160135 | MS.gene054850:CDS | 55.0% | |
| GGCAATGACATCTCCGACGA+AGG | - | chr7.3:20159993-20160012 | MS.gene054850:CDS | 55.0% | |
| !! | GATAGGTCGAAAAGGCGTCG+AGG | - | chr7.3:20160254-20160273 | MS.gene054850:CDS | 55.0% |
| !! | GTCGAAAAGGCGTCGAGGGT+TGG | - | chr7.3:20160259-20160278 | MS.gene054850:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 20158595 | 20160301 | 20158595 | ID=MS.gene054850 |
| chr7.3 | mRNA | 20158595 | 20160301 | 20158595 | ID=MS.gene054850.t1;Parent=MS.gene054850 |
| chr7.3 | exon | 20159981 | 20160301 | 20159981 | ID=MS.gene054850.t1.exon1;Parent=MS.gene054850.t1 |
| chr7.3 | CDS | 20159981 | 20160301 | 20159981 | ID=cds.MS.gene054850.t1;Parent=MS.gene054850.t1 |
| chr7.3 | exon | 20158595 | 20159029 | 20158595 | ID=MS.gene054850.t1.exon2;Parent=MS.gene054850.t1 |
| chr7.3 | CDS | 20158595 | 20159029 | 20158595 | ID=cds.MS.gene054850.t1;Parent=MS.gene054850.t1 |
| Gene Sequence |
| Protein sequence |
