Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72141.t1 | XP_003630507.1 | 95.3 | 511 | 24 | 0 | 70 | 580 | 69 | 579 | 5.10E-279 | 969.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72141.t1 | G7LHC0 | 95.3 | 511 | 24 | 0 | 70 | 580 | 69 | 579 | 3.7e-279 | 969.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049695 | MS.gene72141 | 0.803029 | 4.24E-49 | -1.69E-46 |
| MS.gene049979 | MS.gene72141 | 0.803005 | 4.28E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene72141 | 0.823632 | 1.25E-53 | -1.69E-46 |
| MS.gene050478 | MS.gene72141 | 0.831415 | 1.69E-55 | -1.69E-46 |
| MS.gene050546 | MS.gene72141 | 0.830101 | 3.55E-55 | -1.69E-46 |
| MS.gene052611 | MS.gene72141 | 0.842776 | 2.10E-58 | -1.69E-46 |
| MS.gene052612 | MS.gene72141 | 0.821255 | 4.45E-53 | -1.69E-46 |
| MS.gene053074 | MS.gene72141 | 0.80173 | 7.84E-49 | -1.69E-46 |
| MS.gene054833 | MS.gene72141 | 0.800184 | 1.62E-48 | -1.69E-46 |
| MS.gene055512 | MS.gene72141 | 0.836792 | 7.60E-57 | -1.69E-46 |
| MS.gene056542 | MS.gene72141 | 0.8253 | 5.05E-54 | -1.69E-46 |
| MS.gene056543 | MS.gene72141 | 0.827647 | 1.39E-54 | -1.69E-46 |
| MS.gene056545 | MS.gene72141 | 0.812011 | 5.25E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene72141 | 0.82795 | 1.18E-54 | -1.69E-46 |
| MS.gene056643 | MS.gene72141 | 0.800713 | 1.27E-48 | -1.69E-46 |
| MS.gene059154 | MS.gene72141 | 0.803659 | 3.14E-49 | -1.69E-46 |
| MS.gene060470 | MS.gene72141 | 0.836813 | 7.51E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72141.t1 | MTR_8g098290 | 97.414 | 580 | 14 | 1 | 1 | 580 | 1 | 579 | 0.0 | 1162 |
| MS.gene72141.t1 | MTR_8g098290 | 94.266 | 436 | 24 | 1 | 1 | 436 | 1 | 435 | 0.0 | 794 |
| MS.gene72141.t1 | MTR_8g098260 | 71.296 | 540 | 136 | 5 | 30 | 565 | 19 | 543 | 0.0 | 714 |
| MS.gene72141.t1 | MTR_5g010190 | 61.167 | 600 | 207 | 10 | 1 | 580 | 1 | 594 | 0.0 | 702 |
| MS.gene72141.t1 | MTR_5g010190 | 62.690 | 461 | 163 | 7 | 1 | 458 | 1 | 455 | 0.0 | 556 |
| MS.gene72141.t1 | MTR_6g464540 | 53.125 | 352 | 90 | 7 | 74 | 425 | 50 | 326 | 1.50e-108 | 330 |
| MS.gene72141.t1 | MTR_6g007787 | 34.014 | 147 | 91 | 4 | 100 | 246 | 39 | 179 | 1.68e-17 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72141.t1 | AT4G11560 | 50.490 | 612 | 242 | 12 | 1 | 578 | 1 | 585 | 0.0 | 563 |
| MS.gene72141.t1 | AT4G11560 | 51.383 | 506 | 195 | 9 | 1 | 474 | 1 | 487 | 3.59e-165 | 479 |
| MS.gene72141.t1 | AT2G25120 | 40.199 | 403 | 174 | 8 | 26 | 425 | 15 | 353 | 3.80e-71 | 233 |
| MS.gene72141.t1 | AT4G23120 | 41.322 | 363 | 148 | 11 | 67 | 425 | 22 | 323 | 3.48e-65 | 217 |
| MS.gene72141.t1 | AT3G43990 | 47.000 | 200 | 105 | 1 | 53 | 252 | 33 | 231 | 1.03e-53 | 187 |
| MS.gene72141.t1 | AT3G48050 | 35.754 | 179 | 102 | 5 | 100 | 271 | 47 | 219 | 2.73e-23 | 105 |
| MS.gene72141.t1 | AT3G48050 | 35.754 | 179 | 102 | 5 | 100 | 271 | 47 | 219 | 2.73e-23 | 105 |
| MS.gene72141.t1 | AT3G48060 | 35.196 | 179 | 103 | 5 | 100 | 271 | 47 | 219 | 1.46e-22 | 103 |
| MS.gene72141.t1 | AT3G48060 | 35.196 | 179 | 103 | 5 | 100 | 271 | 47 | 219 | 1.46e-22 | 103 |
| MS.gene72141.t1 | AT3G48060 | 35.196 | 179 | 103 | 5 | 100 | 271 | 48 | 220 | 1.50e-22 | 103 |
Find 117 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGCTTCCATTTCCATTTA+TGG | 0.039959 | 4.2:+6545341 | None:intergenic |
| CTGTTACGCCGTTTATTAAA+TGG | 0.186955 | 4.2:-6543607 | MS.gene72141:CDS |
| AGACTAGCTGTCGTAACTTT+TGG | 0.222495 | 4.2:+6544360 | None:intergenic |
| GACATCACACAATCCATAAA+TGG | 0.285616 | 4.2:-6545354 | MS.gene72141:CDS |
| GGACAACTCCCTGGTGTTCC+AGG | 0.309381 | 4.2:+6544850 | None:intergenic |
| TCTTTATGCCGCCTGTTTCC+AGG | 0.316399 | 4.2:-6542125 | MS.gene72141:CDS |
| GCATAGCTTGTGGTCATTCC+TGG | 0.328387 | 4.2:-6542293 | MS.gene72141:CDS |
| CCGGGATGTACCTTACGATT+TGG | 0.356202 | 4.2:+6545144 | None:intergenic |
| AGTTTCAAGACGTGCTGATT+AGG | 0.362194 | 4.2:-6542085 | None:intergenic |
| ATTTGGAAGTTGTTTGTGTA+TGG | 0.380933 | 4.2:+6545161 | None:intergenic |
| TGATGAAGCTGCTGCTGATC+AGG | 0.382210 | 4.2:-6544974 | MS.gene72141:CDS |
| CTAGCTCTCCATTTAATAAA+CGG | 0.393751 | 4.2:+6543599 | None:intergenic |
| CTGCATGTGTTGTGGCTCAT+CGG | 0.401201 | 4.2:+6542597 | None:intergenic |
| TGGCTCATCGGGCTCATCCT+TGG | 0.407766 | 4.2:+6542609 | None:intergenic |
| ATGGGTTTAGCGTCTTCAAC+TGG | 0.409853 | 4.2:+6546511 | None:intergenic |
| TGCATGTGTTGTGGCTCATC+GGG | 0.417646 | 4.2:+6542598 | None:intergenic |
| ACACAATCCATAAATGGAAA+TGG | 0.420558 | 4.2:-6545348 | MS.gene72141:CDS |
| TTTCAGCTATTGATGTTTCA+AGG | 0.424153 | 4.2:-6544912 | MS.gene72141:CDS |
| ACCTTGATAATTGCGACATA+CGG | 0.431264 | 4.2:+6546158 | None:intergenic |
| TAGCCATCGTGACAAGGGTT+TGG | 0.435591 | 4.2:-6544770 | MS.gene72141:CDS |
| AACCTAACGGGTTCACCAAT+GGG | 0.437811 | 4.2:+6546493 | None:intergenic |
| TATGACACCTACTGAATTGA+AGG | 0.438751 | 4.2:-6543557 | MS.gene72141:intron |
| TGATGCTCTGTGGTAATAAC+TGG | 0.445613 | 4.2:+6544829 | None:intergenic |
| CACCTTCTGCACTATGAACC+CGG | 0.458270 | 4.2:+6545125 | None:intergenic |
| ATTGGTCTTGTCAGATTCAC+GGG | 0.458297 | 4.2:+6542152 | None:intergenic |
| ATTGTGGAAATTAACTGATA+AGG | 0.458770 | 4.2:-6545082 | MS.gene72141:CDS |
| CTTCCAACCTCGGAGGCAAA+AGG | 0.463571 | 4.2:-6546648 | MS.gene72141:CDS |
| GCCGAGTGACGAGGCTGAGA+AGG | 0.469280 | 4.2:-6546590 | MS.gene72141:CDS |
| AGGATATGCTGACCGATATA+TGG | 0.472218 | 4.2:-6542416 | MS.gene72141:intron |
| TCCTTCTCAGCCTCGTCACT+CGG | 0.475898 | 4.2:+6546589 | None:intergenic |
| TTCTCCAGAGCAACTACAGC+TGG | 0.476425 | 4.2:+6544425 | None:intergenic |
| TCAAATTTCGCAGTTGCCCA+TGG | 0.478662 | 4.2:+6542198 | None:intergenic |
| AACCCATTGGTGAACCCGTT+AGG | 0.478741 | 4.2:-6546495 | MS.gene72141:CDS |
| ACAGCTGGAACAGCAACATC+TGG | 0.480099 | 4.2:+6544440 | None:intergenic |
| CGCATCACGAGAGGCAGACC+AGG | 0.481336 | 4.2:+6542275 | None:intergenic |
| TCTCTGAAACCTGGAACACC+AGG | 0.483246 | 4.2:-6544859 | MS.gene72141:CDS |
| TGTTCCAGCTGTAGTTGCTC+TGG | 0.490575 | 4.2:-6544429 | MS.gene72141:CDS |
| CAACTGCGAAATTTGATGTT+GGG | 0.491494 | 4.2:-6542191 | MS.gene72141:CDS |
| CCTCCGAGGTTGGAAGGAGT+CGG | 0.494800 | 4.2:+6546655 | None:intergenic |
| AGCTGTAGTTGCTCTGGAGA+AGG | 0.495264 | 4.2:-6544423 | MS.gene72141:CDS |
| AAATAGAAGAAACTTTAAGA+AGG | 0.497072 | 4.2:-6544938 | MS.gene72141:CDS |
| GTTGTCTTCATCGTCGTCAC+TGG | 0.497783 | 4.2:+6546687 | None:intergenic |
| GAAATGTAGGCACGGCCCCA+TGG | 0.498959 | 4.2:-6542215 | MS.gene72141:CDS |
| CCTCGGAGGCAAAAGGAAGA+TGG | 0.503625 | 4.2:-6546641 | MS.gene72141:CDS |
| CAGAAAACTCGTCAACGGTT+GGG | 0.504228 | 4.2:-6545018 | MS.gene72141:CDS |
| AATGGAAGCTTGATGATCAC+AGG | 0.509765 | 4.2:-6545330 | MS.gene72141:CDS |
| AATAGAAGAAACTTTAAGAA+GGG | 0.511912 | 4.2:-6544937 | MS.gene72141:CDS |
| CATTGGTCTTGTCAGATTCA+CGG | 0.511947 | 4.2:+6542151 | None:intergenic |
| CAAATTTCGCAGTTGCCCAT+GGG | 0.512135 | 4.2:+6542199 | None:intergenic |
| ACCTCAGGCACAAGAAGCAC+AGG | 0.512314 | 4.2:+6546194 | None:intergenic |
| GAAACTATAAAACAGCTCTC+TGG | 0.514714 | 4.2:+6545242 | None:intergenic |
| GTGTTCCAGGTTTCAGAGAG+TGG | 0.515192 | 4.2:+6544863 | None:intergenic |
| TCAGAAAACTCGTCAACGGT+TGG | 0.519475 | 4.2:-6545019 | MS.gene72141:CDS |
| GCTTCATCAGTCTTGATGTC+AGG | 0.519787 | 4.2:+6544988 | None:intergenic |
| AGGTTGGAAGGAGTCGGTTG+TGG | 0.520790 | 4.2:+6546661 | None:intergenic |
| CCCTGTGCTTCTTGTGCCTG+AGG | 0.521604 | 4.2:-6546195 | MS.gene72141:CDS |
| GCCGTATGTCGCAATTATCA+AGG | 0.521805 | 4.2:-6546159 | MS.gene72141:intron |
| AAATGTAGGCACGGCCCCAT+GGG | 0.524078 | 4.2:-6542214 | MS.gene72141:CDS |
| TTTCAGTCATTCGACTTCGA+TGG | 0.526583 | 4.2:-6546439 | MS.gene72141:CDS |
| TTAAGGCGCAGACCATATAT+CGG | 0.527727 | 4.2:+6542404 | None:intergenic |
| CCAAATCGTAAGGTACATCC+CGG | 0.528994 | 4.2:-6545144 | MS.gene72141:CDS |
| AGGCGGCATAAAGATGTCAT+TGG | 0.534499 | 4.2:+6542134 | None:intergenic |
| TTCAGCTATTGATGTTTCAA+GGG | 0.535846 | 4.2:-6544911 | MS.gene72141:CDS |
| GCAACTGCGAAATTTGATGT+TGG | 0.536898 | 4.2:-6542192 | MS.gene72141:CDS |
| TTGGAAGTTGTTTGTGTATG+GGG | 0.541279 | 4.2:+6545163 | None:intergenic |
| TCTGATGCTATTAACAATGA+AGG | 0.542988 | 4.2:-6544670 | MS.gene72141:CDS |
| GGCTGAGAAGGAGGAAGAAG+AGG | 0.543311 | 4.2:-6546578 | MS.gene72141:CDS |
| ATTTGATGTTGGGAAGAAGC+TGG | 0.548027 | 4.2:-6542181 | MS.gene72141:CDS |
| AAACCTAACGGGTTCACCAA+TGG | 0.548184 | 4.2:+6546492 | None:intergenic |
| ACAGCTAGTCTTTAATCTCA+AGG | 0.550261 | 4.2:-6544348 | MS.gene72141:intron |
| GATAATCTGATGAAAATGTA+TGG | 0.551108 | 4.2:+6544393 | None:intergenic |
| ATCTGGCCAGACAAAAGACT+TGG | 0.555544 | 4.2:+6544457 | None:intergenic |
| GATGATATACGAGTGAGTAT+TGG | 0.555834 | 4.2:+6546413 | None:intergenic |
| AGGAGATAGCCATCGTGACA+AGG | 0.557906 | 4.2:-6544776 | MS.gene72141:CDS |
| TTTGGAAGTTGTTTGTGTAT+GGG | 0.559208 | 4.2:+6545162 | None:intergenic |
| GTGAGGGATATTATCCGTGC+AGG | 0.559610 | 4.2:-6542436 | MS.gene72141:CDS |
| AGTCTCCACTCTCTGAAACC+TGG | 0.562516 | 4.2:-6544868 | MS.gene72141:CDS |
| CGATGAGCCACAACACATGC+AGG | 0.563452 | 4.2:-6542596 | MS.gene72141:intron |
| TTAAATACCTTCAATTCAGT+AGG | 0.571340 | 4.2:+6543550 | None:intergenic |
| GCTTGATGATCACAGGGCAG+TGG | 0.574881 | 4.2:-6545323 | MS.gene72141:CDS |
| AGCTATTGATGTTTCAAGGG+AGG | 0.575509 | 4.2:-6544908 | MS.gene72141:CDS |
| AAACAGCTCTCTGGTGTCAA+CGG | 0.576675 | 4.2:+6545251 | None:intergenic |
| GTTGAAGACGCTAAACCCAT+TGG | 0.577340 | 4.2:-6546508 | MS.gene72141:CDS |
| CAACCGACTCCTTCCAACCT+CGG | 0.578331 | 4.2:-6546658 | MS.gene72141:CDS |
| GAGTGACGAGGCTGAGAAGG+AGG | 0.584413 | 4.2:-6546587 | MS.gene72141:CDS |
| TCCCGGGTTCATAGTGCAGA+AGG | 0.588980 | 4.2:-6545127 | MS.gene72141:CDS |
| CAAACAACTTCCAAATCGTA+AGG | 0.589088 | 4.2:-6545154 | MS.gene72141:CDS |
| GAAGGCAATGACAAAAGTGT+AGG | 0.592714 | 4.2:-6544652 | MS.gene72141:CDS |
| GTAATAACTGGACAACTCCC+TGG | 0.594989 | 4.2:+6544841 | None:intergenic |
| ACACAGATGAATTGAAATTG+TGG | 0.595464 | 4.2:-6545098 | MS.gene72141:CDS |
| CTGGTCTGCCTCTCGTGATG+CGG | 0.602163 | 4.2:-6542274 | MS.gene72141:CDS |
| ATCGGTCAGCATATCCTGCA+CGG | 0.603169 | 4.2:+6542422 | None:intergenic |
| GACTGCTGAGGAAATATCCA+AGG | 0.604264 | 4.2:-6542626 | MS.gene72141:CDS |
| ATTCTGCAGGAACCTCATCT+CGG | 0.604407 | 4.2:+6545217 | None:intergenic |
| ATCTAAAGACAAAGTTCCGA+AGG | 0.608846 | 4.2:-6544617 | MS.gene72141:intron |
| ACCTTCTGCACTATGAACCC+GGG | 0.612157 | 4.2:+6545126 | None:intergenic |
| TTATGCATAACAGATTCTGC+AGG | 0.612906 | 4.2:+6545204 | None:intergenic |
| TTATAGTTTCCACCGAGATG+AGG | 0.616938 | 4.2:-6545229 | MS.gene72141:CDS |
| CCAGGAGGGTTTGACTGCTG+AGG | 0.617348 | 4.2:-6542638 | MS.gene72141:intron |
| TTGTTCAGAAAACTCGTCAA+CGG | 0.626910 | 4.2:-6545023 | MS.gene72141:CDS |
| AAATTTCGCAGTTGCCCATG+GGG | 0.641672 | 4.2:+6542200 | None:intergenic |
| TCGCCAAACCCTTGTCACGA+TGG | 0.646277 | 4.2:+6544767 | None:intergenic |
| CAAATCGTAAGGTACATCCC+GGG | 0.647140 | 4.2:-6545143 | MS.gene72141:CDS |
| GGAGATAGCCATCGTGACAA+GGG | 0.652066 | 4.2:-6544775 | MS.gene72141:CDS |
| TCATCTTTCCTGGAAACAGG+CGG | 0.652086 | 4.2:+6542117 | None:intergenic |
| ATGGAAGCTTGATGATCACA+GGG | 0.666809 | 4.2:-6545329 | MS.gene72141:CDS |
| CACAGACACCGCATCACGAG+AGG | 0.671514 | 4.2:+6542266 | None:intergenic |
| CAGCTGGAATGCATAGCTTG+TGG | 0.679347 | 4.2:-6542303 | MS.gene72141:CDS |
| ATCTGTTATGCATAAGTGTG+TGG | 0.679710 | 4.2:-6545196 | MS.gene72141:CDS |
| CTGCAGGAACCTCATCTCGG+TGG | 0.688627 | 4.2:+6545220 | None:intergenic |
| CTCTGAAACCTGGAACACCA+GGG | 0.695985 | 4.2:-6544858 | MS.gene72141:CDS |
| CCTCAGGCACAAGAAGCACA+GGG | 0.699542 | 4.2:+6546195 | None:intergenic |
| AAAGTGACCTGCATGTGTTG+TGG | 0.703974 | 4.2:+6542589 | None:intergenic |
| TTGGTCTTGTCAGATTCACG+GGG | 0.706246 | 4.2:+6542153 | None:intergenic |
| TAATATGCGCTGATGCTCTG+TGG | 0.715970 | 4.2:+6544819 | None:intergenic |
| CCGACTCCTTCCAACCTCGG+AGG | 0.723347 | 4.2:-6546655 | MS.gene72141:CDS |
| CATTGTTAATAGCATCAGAG+CGG | 0.753559 | 4.2:+6544674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATATATATATATGTT+GGG | - | chr4.2:6542719-6542738 | MS.gene72141:intron | 10.0% |
| !! | AAATATGTTCAAAATTATAA+AGG | + | chr4.2:6545424-6545443 | None:intergenic | 10.0% |
| !! | AATGTATTAATTATCAACAA+AGG | + | chr4.2:6542903-6542922 | None:intergenic | 15.0% |
| !! | ACGTTATAAAATAGAATTAT+GGG | - | chr4.2:6543296-6543315 | MS.gene72141:intron | 15.0% |
| !! | ATATATAGTTTCAAAAAACA+AGG | + | chr4.2:6542710-6542729 | None:intergenic | 15.0% |
| !! | ATGTATTAATTATCAACAAA+GGG | + | chr4.2:6542902-6542921 | None:intergenic | 15.0% |
| !! | ATTATTAAAAAATAATCACC+AGG | - | chr4.2:6544649-6544668 | MS.gene72141:CDS | 15.0% |
| !! | GAAACTATATATATATATGT+TGG | - | chr4.2:6542718-6542737 | MS.gene72141:intron | 15.0% |
| !!! | TTTTTTTTTTTCTTTTCTGA+AGG | - | chr4.2:6542868-6542887 | MS.gene72141:intron | 15.0% |
| !! | AAAAAAAAAAGCTGAAAAGA+TGG | + | chr4.2:6545286-6545305 | None:intergenic | 20.0% |
| !! | AACAGATAACATAAAATTGT+TGG | + | chr4.2:6546251-6546270 | None:intergenic | 20.0% |
| !! | ACAGATAACATAAAATTGTT+GGG | + | chr4.2:6546250-6546269 | None:intergenic | 20.0% |
| !! | AGGTCAGAAAAAATAAATAT+GGG | + | chr4.2:6545155-6545174 | None:intergenic | 20.0% |
| !! | GACGTTATAAAATAGAATTA+TGG | - | chr4.2:6543295-6543314 | MS.gene72141:intron | 20.0% |
| !! | TATATATATATATGTTGGGT+TGG | - | chr4.2:6542723-6542742 | MS.gene72141:intron | 20.0% |
| !! | TTATCCAAAGTTATCATATT+AGG | - | chr4.2:6545029-6545048 | MS.gene72141:CDS | 20.0% |
| !!! | AAATAGAAGAAACTTTAAGA+AGG | - | chr4.2:6543866-6543885 | MS.gene72141:intron | 20.0% |
| !!! | AATACCAATTTTTTGTCAAA+CGG | + | chr4.2:6545542-6545561 | None:intergenic | 20.0% |
| !!! | AATAGAAGAAACTTTAAGAA+GGG | - | chr4.2:6543867-6543886 | MS.gene72141:intron | 20.0% |
| !!! | AGGTTTTTAGATATTTTACT+AGG | + | chr4.2:6545644-6545663 | None:intergenic | 20.0% |
| !!! | GTCATATTCAATATTTTTGA+AGG | + | chr4.2:6545233-6545252 | None:intergenic | 20.0% |
| !!! | TATTTTACTAGTATGTAACA+AGG | + | chr4.2:6542677-6542696 | None:intergenic | 20.0% |
| !!! | TCATTTTTTCTTCTTCTTTT+TGG | + | chr4.2:6542193-6542212 | None:intergenic | 20.0% |
| !!! | TTTTTCTTGTAGTATTTTCA+TGG | - | chr4.2:6545716-6545735 | MS.gene72141:intron | 20.0% |
| !!! | TTTTTTTGTTGTAGTTGAAT+AGG | - | chr4.2:6544606-6544625 | MS.gene72141:intron | 20.0% |
| ! | AAAAAGAAAGAAGACAAATG+TGG | - | chr4.2:6544104-6544123 | MS.gene72141:intron | 25.0% |
| ! | AAAATAGTACCATCTAAACT+GGG | - | chr4.2:6544687-6544706 | MS.gene72141:CDS | 25.0% |
| ! | AACAATGTGACAGTTTATAA+TGG | + | chr4.2:6543008-6543027 | None:intergenic | 25.0% |
| ! | AAGAAATCACAACCATAATT+GGG | + | chr4.2:6544227-6544246 | None:intergenic | 25.0% |
| ! | ATAACATAAAATTGTTGGGA+TGG | + | chr4.2:6546246-6546265 | None:intergenic | 25.0% |
| ! | ATTGTGGAAATTAACTGATA+AGG | - | chr4.2:6543722-6543741 | MS.gene72141:intron | 25.0% |
| ! | CTACATGTTATAAAAGAGAA+GGG | + | chr4.2:6543377-6543396 | None:intergenic | 25.0% |
| ! | CTATCCTAATATGATAACTT+TGG | + | chr4.2:6545036-6545055 | None:intergenic | 25.0% |
| ! | CTGAACTTAGTAAATGAATT+GGG | - | chr4.2:6545907-6545926 | MS.gene72141:intron | 25.0% |
| ! | GAATATTATCTACTGAATGT+TGG | - | chr4.2:6546280-6546299 | MS.gene72141:intron | 25.0% |
| ! | GAGGTCAGAAAAAATAAATA+TGG | + | chr4.2:6545156-6545175 | None:intergenic | 25.0% |
| ! | GATAATCTGATGAAAATGTA+TGG | + | chr4.2:6544414-6544433 | None:intergenic | 25.0% |
| ! | GTTATTCTGTGGTTATTTAT+TGG | - | chr4.2:6546132-6546151 | MS.gene72141:intron | 25.0% |
| ! | TAAAATAGTACCATCTAAAC+TGG | - | chr4.2:6544686-6544705 | MS.gene72141:CDS | 25.0% |
| ! | TATAACAATGCGACAAAATT+TGG | + | chr4.2:6543237-6543256 | None:intergenic | 25.0% |
| ! | TATCATCCATTAATCACATA+CGG | + | chr4.2:6545785-6545804 | None:intergenic | 25.0% |
| ! | TATGAATTTAGTGATCATCT+GGG | - | chr4.2:6542776-6542795 | MS.gene72141:intron | 25.0% |
| ! | TCTACATGTTATAAAAGAGA+AGG | + | chr4.2:6543378-6543397 | None:intergenic | 25.0% |
| ! | TGAACTTAGTAAATGAATTG+GGG | - | chr4.2:6545908-6545927 | MS.gene72141:intron | 25.0% |
| ! | TTAAATACCTTCAATTCAGT+AGG | + | chr4.2:6545257-6545276 | None:intergenic | 25.0% |
| ! | TTATGAATTTAGTGATCATC+TGG | - | chr4.2:6542775-6542794 | MS.gene72141:intron | 25.0% |
| ! | TTCAAGGTAGTTAGAATTAA+AGG | + | chr4.2:6543041-6543060 | None:intergenic | 25.0% |
| ! | TTTATTAGACATTAATCTCC+TGG | + | chr4.2:6544670-6544689 | None:intergenic | 25.0% |
| !! | AATCCTTTATGTGATTTTCA+AGG | + | chr4.2:6543057-6543076 | None:intergenic | 25.0% |
| !! | AGGATAGAATTAAGATTTTG+AGG | - | chr4.2:6545049-6545068 | MS.gene72141:CDS | 25.0% |
| !! | GAAATATCAGTAAAGCATTA+AGG | + | chr4.2:6546420-6546439 | None:intergenic | 25.0% |
| !! | GATAGAATTAAGATTTTGAG+GGG | - | chr4.2:6545051-6545070 | MS.gene72141:CDS | 25.0% |
| !! | GGATAGAATTAAGATTTTGA+GGG | - | chr4.2:6545050-6545069 | MS.gene72141:CDS | 25.0% |
| !! | TAACTTTGGAAAGATTAATC+TGG | - | chr4.2:6546110-6546129 | MS.gene72141:intron | 25.0% |
| !! | TTTTGTTCAGTCAATACAAT+TGG | - | chr4.2:6545393-6545412 | MS.gene72141:intron | 25.0% |
| !!! | GATTTACTATTTCTGTTGTA+TGG | - | chr4.2:6544750-6544769 | MS.gene72141:CDS | 25.0% |
| !!! | TATTTTCTGTGATGTTTTGA+AGG | - | chr4.2:6545870-6545889 | MS.gene72141:intron | 25.0% |
| !!! | TTGGAAGTTACTTTTCAATA+TGG | - | chr4.2:6544479-6544498 | MS.gene72141:intron | 25.0% |
| !!! | TTTTCTTTGAGCTTTAAACA+GGG | - | chr4.2:6544883-6544902 | MS.gene72141:CDS | 25.0% |
| !!! | TTTTTCTTTGAGCTTTAAAC+AGG | - | chr4.2:6544882-6544901 | MS.gene72141:CDS | 25.0% |
| AACACCGTTTGACAAAAAAT+TGG | - | chr4.2:6545535-6545554 | MS.gene72141:intron | 30.0% | |
| AACTCATCACTGAACTTAAA+AGG | + | chr4.2:6544965-6544984 | None:intergenic | 30.0% | |
| ACACAATCCATAAATGGAAA+TGG | - | chr4.2:6543456-6543475 | MS.gene72141:intron | 30.0% | |
| ACACAGATGAATTGAAATTG+TGG | - | chr4.2:6543706-6543725 | MS.gene72141:intron | 30.0% | |
| AGATTAATCTGGTTATTCTG+TGG | - | chr4.2:6546121-6546140 | MS.gene72141:intron | 30.0% | |
| ATTTGGAAGTTGTTTGTGTA+TGG | + | chr4.2:6543646-6543665 | None:intergenic | 30.0% | |
| CAAGAAATCACAACCATAAT+TGG | + | chr4.2:6544228-6544247 | None:intergenic | 30.0% | |
| CTACCTTGAAAATCACATAA+AGG | - | chr4.2:6543051-6543070 | MS.gene72141:intron | 30.0% | |
| CTAGGATCTAATCTGATTAA+AGG | + | chr4.2:6545626-6545645 | None:intergenic | 30.0% | |
| GCTGAACTTAGTAAATGAAT+TGG | - | chr4.2:6545906-6545925 | MS.gene72141:intron | 30.0% | |
| TCAGACTCAAAAAGAAATGT+AGG | - | chr4.2:6546576-6546595 | MS.gene72141:CDS | 30.0% | |
| TCTGATGCTATTAACAATGA+AGG | - | chr4.2:6544134-6544153 | MS.gene72141:intron | 30.0% | |
| TTAAAAACAAACAGCACATG+AGG | + | chr4.2:6546039-6546058 | None:intergenic | 30.0% | |
| TTATCAAAAGCCAAGAAATG+AGG | + | chr4.2:6543206-6543225 | None:intergenic | 30.0% | |
| TTATCCAAAATCATATGCAG+TGG | + | chr4.2:6544570-6544589 | None:intergenic | 30.0% | |
| TTATTGGATATTTGAACTCC+AGG | - | chr4.2:6546148-6546167 | MS.gene72141:intron | 30.0% | |
| TTCAGCTATTGATGTTTCAA+GGG | - | chr4.2:6543893-6543912 | MS.gene72141:intron | 30.0% | |
| TTTCAGCTATTGATGTTTCA+AGG | - | chr4.2:6543892-6543911 | MS.gene72141:intron | 30.0% | |
| TTTGGAAGTTGTTTGTGTAT+GGG | + | chr4.2:6543645-6543664 | None:intergenic | 30.0% | |
| ! | ACAGTGCTGAAAAACATTTA+AGG | + | chr4.2:6544513-6544532 | None:intergenic | 30.0% |
| ! | ACTGCATATGATTTTGGATA+AGG | - | chr4.2:6544569-6544588 | MS.gene72141:intron | 30.0% |
| ! | ATATGTTCCAACCTTTTCTT+GGG | - | chr4.2:6545564-6545583 | MS.gene72141:intron | 30.0% |
| ! | CACATTCTTTCTAGTAACTT+TGG | - | chr4.2:6546096-6546115 | MS.gene72141:intron | 30.0% |
| ! | CATATGATTTTGGATAAGGT+GGG | - | chr4.2:6544573-6544592 | MS.gene72141:intron | 30.0% |
| ! | CTAGCTCTCCATTTAATAAA+CGG | + | chr4.2:6545208-6545227 | None:intergenic | 30.0% |
| ! | TATATGTTCCAACCTTTTCT+TGG | - | chr4.2:6545563-6545582 | MS.gene72141:intron | 30.0% |
| ! | TTTTAGCATTCAGAATGATG+TGG | - | chr4.2:6544922-6544941 | MS.gene72141:CDS | 30.0% |
| !! | AAAACCTTTGTTACTTTCCT+TGG | - | chr4.2:6545657-6545676 | MS.gene72141:intron | 30.0% |
| !! | AGAACACACTTTTAGAAAAC+TGG | - | chr4.2:6545970-6545989 | MS.gene72141:intron | 30.0% |
| !! | ATTTGTTTTCCTTTTCCTTG+AGG | - | chr4.2:6544279-6544298 | MS.gene72141:intron | 30.0% |
| !! | GTGAATTTTAATGCGTTAAC+AGG | - | chr4.2:6544008-6544027 | MS.gene72141:intron | 30.0% |
| !! | TTTCTTGGCTTTTGATAACA+AGG | - | chr4.2:6543208-6543227 | MS.gene72141:intron | 30.0% |
| !! | TTTCTTTGAGCTTTAAACAG+GGG | - | chr4.2:6544884-6544903 | MS.gene72141:CDS | 30.0% |
| !! | TTTGTTTTCCTTTTCCTTGA+GGG | - | chr4.2:6544280-6544299 | MS.gene72141:intron | 30.0% |
| !!! | CGTGTTTTAGAAAAAGGATA+GGG | - | chr4.2:6545993-6546012 | MS.gene72141:intron | 30.0% |
| !!! | GTGTTTTAGAAAAAGGATAG+GGG | - | chr4.2:6545994-6546013 | MS.gene72141:intron | 30.0% |
| !!! | TGTTTTAGAAAAAGGATAGG+GGG | - | chr4.2:6545995-6546014 | MS.gene72141:intron | 30.0% |
| AAAACGTTAGATCCAATGCA+TGG | + | chr4.2:6545695-6545714 | None:intergenic | 35.0% | |
| AAACGTTAGATCCAATGCAT+GGG | + | chr4.2:6545694-6545713 | None:intergenic | 35.0% | |
| AATTCTGTAGAGCGAAACAA+TGG | + | chr4.2:6544327-6544346 | None:intergenic | 35.0% | |
| ACAAATTTCGCAAGTTGTGA+TGG | - | chr4.2:6545125-6545144 | MS.gene72141:CDS | 35.0% | |
| ACACGTAAAGGAGAAAAGAA+AGG | + | chr4.2:6543333-6543352 | None:intergenic | 35.0% | |
| ACGAGAGTAAGCAATAATCA+TGG | + | chr4.2:6545514-6545533 | None:intergenic | 35.0% | |
| ACGTAAAGGAGAAAAGAAAG+GGG | + | chr4.2:6543331-6543350 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAGAAG+AGG | - | chr4.2:6542262-6542281 | MS.gene72141:CDS | 35.0% | |
| AGAATGATGTGGTCAACTAA+CGG | - | chr4.2:6544933-6544952 | MS.gene72141:CDS | 35.0% | |
| ATCTAAAGACAAAGTTCCGA+AGG | - | chr4.2:6544187-6544206 | MS.gene72141:intron | 35.0% | |
| ATCTGTTATGCATAAGTGTG+TGG | - | chr4.2:6543608-6543627 | MS.gene72141:CDS | 35.0% | |
| ATGACAGCTTGTCACTATTA+GGG | - | chr4.2:6542498-6542517 | MS.gene72141:intron | 35.0% | |
| ATGCATTGTTCTGCAAAATG+AGG | + | chr4.2:6545175-6545194 | None:intergenic | 35.0% | |
| ATGGTTGTGATTTCTTGTGT+GGG | - | chr4.2:6544231-6544250 | MS.gene72141:intron | 35.0% | |
| ATTCATCAGTATGTGACCTA+TGG | + | chr4.2:6544723-6544742 | None:intergenic | 35.0% | |
| ATTGCCAAGGAAAGTAACAA+AGG | + | chr4.2:6545664-6545683 | None:intergenic | 35.0% | |
| ATTTGCGATGAGCAAAAAGT+TGG | - | chr4.2:6546344-6546363 | MS.gene72141:intron | 35.0% | |
| CAAACAACTTCCAAATCGTA+AGG | - | chr4.2:6543650-6543669 | MS.gene72141:intron | 35.0% | |
| CAAATTTCGCAAGTTGTGAT+GGG | - | chr4.2:6545126-6545145 | MS.gene72141:CDS | 35.0% | |
| CAACTGCGAAATTTGATGTT+GGG | - | chr4.2:6546613-6546632 | MS.gene72141:CDS | 35.0% | |
| CAAGCTTCCATTTCCATTTA+TGG | + | chr4.2:6543466-6543485 | None:intergenic | 35.0% | |
| CACGTAAAGGAGAAAAGAAA+GGG | + | chr4.2:6543332-6543351 | None:intergenic | 35.0% | |
| CATACATAACCCAGTTTAGA+TGG | + | chr4.2:6544699-6544718 | None:intergenic | 35.0% | |
| CATTATAACCCTCAAGGAAA+AGG | + | chr4.2:6544291-6544310 | None:intergenic | 35.0% | |
| CATTGTTAATAGCATCAGAG+CGG | + | chr4.2:6544133-6544152 | None:intergenic | 35.0% | |
| CTCAAAAAGAAATGTAGGCA+CGG | - | chr4.2:6546581-6546600 | MS.gene72141:CDS | 35.0% | |
| CTGGAAATCAGAAAATGGAA+AGG | + | chr4.2:6543413-6543432 | None:intergenic | 35.0% | |
| CTGTTACGCCGTTTATTAAA+TGG | - | chr4.2:6545197-6545216 | MS.gene72141:CDS | 35.0% | |
| GAAACTATAAAACAGCTCTC+TGG | + | chr4.2:6543565-6543584 | None:intergenic | 35.0% | |
| GAAGTGATTCTGCAACTTAT+TGG | - | chr4.2:6542555-6542574 | MS.gene72141:intron | 35.0% | |
| GACATCACACAATCCATAAA+TGG | - | chr4.2:6543450-6543469 | MS.gene72141:intron | 35.0% | |
| GATGATATACGAGTGAGTAT+TGG | + | chr4.2:6542394-6542413 | None:intergenic | 35.0% | |
| TATGACACCTACTGAATTGA+AGG | - | chr4.2:6545247-6545266 | MS.gene72141:CDS | 35.0% | |
| TATGACAGCTTGTCACTATT+AGG | - | chr4.2:6542497-6542516 | MS.gene72141:intron | 35.0% | |
| TATGGTTGTGATTTCTTGTG+TGG | - | chr4.2:6544230-6544249 | MS.gene72141:intron | 35.0% | |
| TCCTGACAAAAAAACAACTC+TGG | + | chr4.2:6543432-6543451 | None:intergenic | 35.0% | |
| TGAAGTCATTATAACCCTCA+AGG | + | chr4.2:6544297-6544316 | None:intergenic | 35.0% | |
| TTATGCATAACAGATTCTGC+AGG | + | chr4.2:6543603-6543622 | None:intergenic | 35.0% | |
| TTCATGGATGCATCATTCTA+GGG | - | chr4.2:6545732-6545751 | MS.gene72141:intron | 35.0% | |
| TTGGAAGTTGTTTGTGTATG+GGG | + | chr4.2:6543644-6543663 | None:intergenic | 35.0% | |
| TTGTTCAGAAAACTCGTCAA+CGG | - | chr4.2:6543781-6543800 | MS.gene72141:intron | 35.0% | |
| TTTCATGGATGCATCATTCT+AGG | - | chr4.2:6545731-6545750 | MS.gene72141:intron | 35.0% | |
| ! | ACCTTGATAATTGCGACATA+CGG | + | chr4.2:6542649-6542668 | None:intergenic | 35.0% |
| ! | AGAATTCCAAGTCTTTTGTC+TGG | - | chr4.2:6544341-6544360 | MS.gene72141:intron | 35.0% |
| ! | CAACTCTGGAAATCAGAAAA+TGG | + | chr4.2:6543418-6543437 | None:intergenic | 35.0% |
| ! | CTAGTCTTTAATCTCAAGGT+TGG | - | chr4.2:6544460-6544479 | MS.gene72141:CDS | 35.0% |
| ! | CTTCTTGAAGTACCCAATTA+TGG | - | chr4.2:6544212-6544231 | MS.gene72141:intron | 35.0% |
| ! | GCATATGATTTTGGATAAGG+TGG | - | chr4.2:6544572-6544591 | MS.gene72141:intron | 35.0% |
| ! | TATGTTCCAACCTTTTCTTG+GGG | - | chr4.2:6545565-6545584 | MS.gene72141:intron | 35.0% |
| ! | TCCTTTTCCAGAAAACCTAA+CGG | + | chr4.2:6542327-6542346 | None:intergenic | 35.0% |
| ! | TTCGATGTTTTCATCTTTCC+TGG | + | chr4.2:6546700-6546719 | None:intergenic | 35.0% |
| ! | TTCTTTTCTCCTTTACGTGT+GGG | - | chr4.2:6543333-6543352 | MS.gene72141:intron | 35.0% |
| ! | TTTCTTTTCTCCTTTACGTG+TGG | - | chr4.2:6543332-6543351 | MS.gene72141:intron | 35.0% |
| ! | TTTTCATCTTTCCTGGAAAC+AGG | + | chr4.2:6546693-6546712 | None:intergenic | 35.0% |
| !! | ACAGCTAGTCTTTAATCTCA+AGG | - | chr4.2:6544456-6544475 | MS.gene72141:CDS | 35.0% |
| !! | TAGCTTCCATGTTTTGTTCT+TGG | - | chr4.2:6543145-6543164 | MS.gene72141:intron | 35.0% |
| !! | TTCTTTGAGCTTTAAACAGG+GGG | - | chr4.2:6544885-6544904 | MS.gene72141:CDS | 35.0% |
| !! | TTTGTTACTTTCCTTGGCAA+TGG | - | chr4.2:6545663-6545682 | MS.gene72141:intron | 35.0% |
| !! | TTTTGAGTCTGATGCATCTA+AGG | + | chr4.2:6546568-6546587 | None:intergenic | 35.0% |
| !!! | AACTGGCGTGTTTTAGAAAA+AGG | - | chr4.2:6545987-6546006 | MS.gene72141:intron | 35.0% |
| !!! | GCGTGTTTTAGAAAAAGGAT+AGG | - | chr4.2:6545992-6546011 | MS.gene72141:intron | 35.0% |
| !!! | GTATGCTGTTTGTTTTGCAT+TGG | - | chr4.2:6542798-6542817 | MS.gene72141:intron | 35.0% |
| !!! | TCCAGAGTTGTTTTTTTGTC+AGG | - | chr4.2:6543428-6543447 | MS.gene72141:intron | 35.0% |
| AACGTTAGATCCAATGCATG+GGG | + | chr4.2:6545693-6545712 | None:intergenic | 40.0% | |
| ACCTTAGATGATGTGAATCG+AGG | + | chr4.2:6545008-6545027 | None:intergenic | 40.0% | |
| ACTGGGTTATGTATGTCCAT+AGG | - | chr4.2:6544704-6544723 | MS.gene72141:CDS | 40.0% | |
| AGCTATTGATGTTTCAAGGG+AGG | - | chr4.2:6543896-6543915 | MS.gene72141:intron | 40.0% | |
| AGGATATGCTGACCGATATA+TGG | - | chr4.2:6546388-6546407 | MS.gene72141:intron | 40.0% | |
| ATTTGATGTTGGGAAGAAGC+TGG | - | chr4.2:6546623-6546642 | MS.gene72141:CDS | 40.0% | |
| CCAGACGAAGCAGAAAAAAA+GGG | - | chr4.2:6543513-6543532 | MS.gene72141:intron | 40.0% | |
| GCAACTGCGAAATTTGATGT+TGG | - | chr4.2:6546612-6546631 | MS.gene72141:CDS | 40.0% | |
| GTAGTGTTGTCCTCATTTCT+TGG | - | chr4.2:6543193-6543212 | MS.gene72141:intron | 40.0% | |
| TCAGCAGTACGTTAATTCGT+TGG | - | chr4.2:6545759-6545778 | MS.gene72141:intron | 40.0% | |
| TCCAGACGAAGCAGAAAAAA+AGG | - | chr4.2:6543512-6543531 | MS.gene72141:intron | 40.0% | |
| TGATGCTCTGTGGTAATAAC+TGG | + | chr4.2:6543978-6543997 | None:intergenic | 40.0% | |
| TGGATATTTGAACTCCAGGA+GGG | - | chr4.2:6546152-6546171 | MS.gene72141:intron | 40.0% | |
| TTAACCAAGAACAGTCTGCA+AGG | + | chr4.2:6545090-6545109 | None:intergenic | 40.0% | |
| TTAAGGCGCAGACCATATAT+CGG | + | chr4.2:6546403-6546422 | None:intergenic | 40.0% | |
| TTATAGTTTCCACCGAGATG+AGG | - | chr4.2:6543575-6543594 | MS.gene72141:CDS | 40.0% | |
| TTCTTCTTCTTCTTCTTCGC+TGG | + | chr4.2:6542258-6542277 | None:intergenic | 40.0% | |
| TTGGATATTTGAACTCCAGG+AGG | - | chr4.2:6546151-6546170 | MS.gene72141:intron | 40.0% | |
| TTTCAGTCATTCGACTTCGA+TGG | - | chr4.2:6542365-6542384 | MS.gene72141:intron | 40.0% | |
| ! | AATGGAAGCTTGATGATCAC+AGG | - | chr4.2:6543474-6543493 | MS.gene72141:intron | 40.0% |
| ! | ATGGAAGCTTGATGATCACA+GGG | - | chr4.2:6543475-6543494 | MS.gene72141:intron | 40.0% |
| ! | ATGTTCCAACCTTTTCTTGG+GGG | - | chr4.2:6545566-6545585 | MS.gene72141:intron | 40.0% |
| ! | CCTTTTCCAGAAAACCTAAC+GGG | + | chr4.2:6542326-6542345 | None:intergenic | 40.0% |
| ! | GAAGGCAATGACAAAAGTGT+AGG | - | chr4.2:6544152-6544171 | MS.gene72141:intron | 40.0% |
| ! | GGCTTTTGATCTTTAACCTC+AGG | + | chr4.2:6542628-6542647 | None:intergenic | 40.0% |
| ! | GTCACCACTGCATATGATTT+TGG | - | chr4.2:6544563-6544582 | MS.gene72141:intron | 40.0% |
| ! | TCTTTTCTCCTTTACGTGTG+GGG | - | chr4.2:6543334-6543353 | MS.gene72141:intron | 40.0% |
| !! | AGACTAGCTGTCGTAACTTT+TGG | + | chr4.2:6544447-6544466 | None:intergenic | 40.0% |
| !! | AGGTTTTCTGGAAAAGGAAG+AGG | - | chr4.2:6542329-6542348 | MS.gene72141:intron | 40.0% |
| !! | ATTGGTCTTGTCAGATTCAC+GGG | + | chr4.2:6546655-6546674 | None:intergenic | 40.0% |
| !! | CATTGGTCTTGTCAGATTCA+CGG | + | chr4.2:6546656-6546675 | None:intergenic | 40.0% |
| !! | GAATTAAGATTTTGAGGGGC+TGG | - | chr4.2:6545055-6545074 | MS.gene72141:CDS | 40.0% |
| !! | GACTAGCTGTCGTAACTTTT+GGG | + | chr4.2:6544446-6544465 | None:intergenic | 40.0% |
| !! | GGTACTTCAAGAAGTACCTT+CGG | + | chr4.2:6544206-6544225 | None:intergenic | 40.0% |
| !! | TCCTGCGCTTTTTATGACTT+CGG | - | chr4.2:6546456-6546475 | MS.gene72141:CDS | 40.0% |
| !! | TTTCGCGTTATTGATTCTGC+AGG | - | chr4.2:6542582-6542601 | MS.gene72141:intron | 40.0% |
| !!! | ATTTTGAGGGGCTGGTTTTT+CGG | - | chr4.2:6545063-6545082 | MS.gene72141:CDS | 40.0% |
| !!! | CTGAATGTTGGCTTTTCTAC+TGG | - | chr4.2:6546292-6546311 | MS.gene72141:intron | 40.0% |
| !!! | TTTTTTCTGCTTCGTCTGGA+CGG | + | chr4.2:6543512-6543531 | None:intergenic | 40.0% |
| AAAAAAAGGGAGGTGGTAGC+TGG | - | chr4.2:6543526-6543545 | MS.gene72141:intron | 45.0% | |
| AAAAATGAAGCCGAGTGACG+AGG | - | chr4.2:6542205-6542224 | MS.gene72141:CDS | 45.0% | |
| AAAGTGACCTGCATGTGTTG+TGG | + | chr4.2:6546218-6546237 | None:intergenic | 45.0% | |
| AAATTTCGCAGTTGCCCATG+GGG | + | chr4.2:6546607-6546626 | None:intergenic | 45.0% | |
| ACGTTAGATCCAATGCATGG+GGG | + | chr4.2:6545692-6545711 | None:intergenic | 45.0% | |
| AGGCGGCATAAAGATGTCAT+TGG | + | chr4.2:6546673-6546692 | None:intergenic | 45.0% | |
| ATCTGGCCAGACAAAAGACT+TGG | + | chr4.2:6544350-6544369 | None:intergenic | 45.0% | |
| ATGAGCAAAAAGTTGGCGTG+AGG | - | chr4.2:6546351-6546370 | MS.gene72141:intron | 45.0% | |
| ATGATGTGGTCAACTAACGG+TGG | - | chr4.2:6544936-6544955 | MS.gene72141:CDS | 45.0% | |
| ATGGGTTTAGCGTCTTCAAC+TGG | + | chr4.2:6542296-6542315 | None:intergenic | 45.0% | |
| ATTCTGCAGGAACCTCATCT+CGG | + | chr4.2:6543590-6543609 | None:intergenic | 45.0% | |
| CAAATCGTAAGGTACATCCC+GGG | - | chr4.2:6543661-6543680 | MS.gene72141:intron | 45.0% | |
| CAAATTTCGCAGTTGCCCAT+GGG | + | chr4.2:6546608-6546627 | None:intergenic | 45.0% | |
| CACGTGCCAAGAACAAAACA+TGG | + | chr4.2:6543154-6543173 | None:intergenic | 45.0% | |
| CAGAAAACTCGTCAACGGTT+GGG | - | chr4.2:6543786-6543805 | MS.gene72141:intron | 45.0% | |
| CCAAATCGTAAGGTACATCC+CGG | - | chr4.2:6543660-6543679 | MS.gene72141:intron | 45.0% | |
| CGTTGGCCGTATGTGATTAA+TGG | - | chr4.2:6545776-6545795 | MS.gene72141:intron | 45.0% | |
| GAAGCAGAAAAAAAGGGAGG+TGG | - | chr4.2:6543519-6543538 | MS.gene72141:intron | 45.0% | |
| GACGAAGCAGAAAAAAAGGG+AGG | - | chr4.2:6543516-6543535 | MS.gene72141:intron | 45.0% | |
| GACTGCTGAGGAAATATCCA+AGG | - | chr4.2:6546178-6546197 | MS.gene72141:CDS | 45.0% | |
| GCCGTATGTCGCAATTATCA+AGG | - | chr4.2:6542645-6542664 | MS.gene72141:intron | 45.0% | |
| GCCTCGATTCACATCATCTA+AGG | - | chr4.2:6545004-6545023 | MS.gene72141:CDS | 45.0% | |
| GCTTCATCAGTCTTGATGTC+AGG | + | chr4.2:6543819-6543838 | None:intergenic | 45.0% | |
| GTAATAACTGGACAACTCCC+TGG | + | chr4.2:6543966-6543985 | None:intergenic | 45.0% | |
| GTTGAAGACGCTAAACCCAT+TGG | - | chr4.2:6542296-6542315 | MS.gene72141:CDS | 45.0% | |
| TCAAATTTCGCAGTTGCCCA+TGG | + | chr4.2:6546609-6546628 | None:intergenic | 45.0% | |
| TCAGAAAACTCGTCAACGGT+TGG | - | chr4.2:6543785-6543804 | MS.gene72141:intron | 45.0% | |
| TCATCTTTCCTGGAAACAGG+CGG | + | chr4.2:6546690-6546709 | None:intergenic | 45.0% | |
| TGAGCAAAAAGTTGGCGTGA+GGG | - | chr4.2:6546352-6546371 | MS.gene72141:intron | 45.0% | |
| TTTACGTGTGGGGACAGATA+GGG | - | chr4.2:6543344-6543363 | MS.gene72141:intron | 45.0% | |
| TTTGGATAAGGTGGGACAGT+GGG | - | chr4.2:6544581-6544600 | MS.gene72141:intron | 45.0% | |
| ! | AAACAGCTCTCTGGTGTCAA+CGG | + | chr4.2:6543556-6543575 | None:intergenic | 45.0% |
| ! | ACCGAAGTCATAAAAAGCGC+AGG | + | chr4.2:6546460-6546479 | None:intergenic | 45.0% |
| ! | TAATATGCGCTGATGCTCTG+TGG | + | chr4.2:6543988-6544007 | None:intergenic | 45.0% |
| ! | TTTTGCTCTGCTTGTTCAGC+TGG | - | chr4.2:6546485-6546504 | MS.gene72141:CDS | 45.0% |
| ! | TTTTGGATAAGGTGGGACAG+TGG | - | chr4.2:6544580-6544599 | MS.gene72141:intron | 45.0% |
| !! | AAACCTAACGGGTTCACCAA+TGG | + | chr4.2:6542315-6542334 | None:intergenic | 45.0% |
| !! | AACCTAACGGGTTCACCAAT+GGG | + | chr4.2:6542314-6542333 | None:intergenic | 45.0% |
| !! | CCCGTTAGGTTTTCTGGAAA+AGG | - | chr4.2:6542323-6542342 | MS.gene72141:intron | 45.0% |
| !! | TTGGTCTTGTCAGATTCACG+GGG | + | chr4.2:6546654-6546673 | None:intergenic | 45.0% |
| !!! | CCCTTTTTTTCTGCTTCGTC+TGG | + | chr4.2:6543516-6543535 | None:intergenic | 45.0% |
| !!! | TTTTGAGGGGCTGGTTTTTC+GGG | - | chr4.2:6545064-6545083 | MS.gene72141:CDS | 45.0% |
| !! | AAGAAAAAAAAAAAAAAAAA+AGG | + | chr4.2:6542862-6542881 | None:intergenic | 5.0% |
| !! | AGAAAAAAAAAAAAAAAAAA+GGG | + | chr4.2:6542861-6542880 | None:intergenic | 5.0% |
| AACCCATTGGTGAACCCGTT+AGG | - | chr4.2:6542309-6542328 | MS.gene72141:intron | 50.0% | |
| ACAGCTGGAACAGCAACATC+TGG | + | chr4.2:6544367-6544386 | None:intergenic | 50.0% | |
| ACCTTCTGCACTATGAACCC+GGG | + | chr4.2:6543681-6543700 | None:intergenic | 50.0% | |
| AGGAGATAGCCATCGTGACA+AGG | - | chr4.2:6544028-6544047 | MS.gene72141:intron | 50.0% | |
| ATCGGTCAGCATATCCTGCA+CGG | + | chr4.2:6546385-6546404 | None:intergenic | 50.0% | |
| CACCTTCTGCACTATGAACC+CGG | + | chr4.2:6543682-6543701 | None:intergenic | 50.0% | |
| CAGCTGGAATGCATAGCTTG+TGG | - | chr4.2:6546501-6546520 | MS.gene72141:CDS | 50.0% | |
| CCGGGATGTACCTTACGATT+TGG | + | chr4.2:6543663-6543682 | None:intergenic | 50.0% | |
| CTATCTGTCCCCACACGTAA+AGG | + | chr4.2:6543345-6543364 | None:intergenic | 50.0% | |
| CTGCATGTGTTGTGGCTCAT+CGG | + | chr4.2:6546210-6546229 | None:intergenic | 50.0% | |
| CTTTACGTGTGGGGACAGAT+AGG | - | chr4.2:6543343-6543362 | MS.gene72141:intron | 50.0% | |
| GGAGATAGCCATCGTGACAA+GGG | - | chr4.2:6544029-6544048 | MS.gene72141:intron | 50.0% | |
| GTGAGGGATATTATCCGTGC+AGG | - | chr4.2:6546368-6546387 | MS.gene72141:intron | 50.0% | |
| GTGTTCCAGGTTTCAGAGAG+TGG | + | chr4.2:6543944-6543963 | None:intergenic | 50.0% | |
| GTTGTCTTCATCGTCGTCAC+TGG | + | chr4.2:6542120-6542139 | None:intergenic | 50.0% | |
| TAGCCATCGTGACAAGGGTT+TGG | - | chr4.2:6544034-6544053 | MS.gene72141:intron | 50.0% | |
| TCTTTATGCCGCCTGTTTCC+AGG | - | chr4.2:6546679-6546698 | MS.gene72141:CDS | 50.0% | |
| TGATGAAGCTGCTGCTGATC+AGG | - | chr4.2:6543830-6543849 | MS.gene72141:intron | 50.0% | |
| TGCATGTGTTGTGGCTCATC+GGG | + | chr4.2:6546209-6546228 | None:intergenic | 50.0% | |
| TGTTCCAGCTGTAGTTGCTC+TGG | - | chr4.2:6544375-6544394 | MS.gene72141:CDS | 50.0% | |
| TTCTCCAGAGCAACTACAGC+TGG | + | chr4.2:6544382-6544401 | None:intergenic | 50.0% | |
| ! | GCATAGCTTGTGGTCATTCC+TGG | - | chr4.2:6546511-6546530 | MS.gene72141:CDS | 50.0% |
| ! | GGTGAACCCGTTAGGTTTTC+TGG | - | chr4.2:6542317-6542336 | MS.gene72141:intron | 50.0% |
| ! | TCCAACCTTTTCTTGGGGGT+GGG | - | chr4.2:6545570-6545589 | MS.gene72141:intron | 50.0% |
| ! | TTCCAACCTTTTCTTGGGGG+TGG | - | chr4.2:6545569-6545588 | MS.gene72141:intron | 50.0% |
| !! | AGCTGTAGTTGCTCTGGAGA+AGG | - | chr4.2:6544381-6544400 | MS.gene72141:CDS | 50.0% |
| !! | AGTCTCCACTCTCTGAAACC+TGG | - | chr4.2:6543936-6543955 | MS.gene72141:intron | 50.0% |
| !! | CGCGTTATTGATTCTGCAGG+AGG | - | chr4.2:6542585-6542604 | MS.gene72141:intron | 50.0% |
| !! | CTCTGAAACCTGGAACACCA+GGG | - | chr4.2:6543946-6543965 | MS.gene72141:intron | 50.0% |
| !! | TCTCTGAAACCTGGAACACC+AGG | - | chr4.2:6543945-6543964 | MS.gene72141:intron | 50.0% |
| AAATGTAGGCACGGCCCCAT+GGG | - | chr4.2:6546590-6546609 | MS.gene72141:CDS | 55.0% | |
| AACTCCCCACCCCCAAGAAA+AGG | + | chr4.2:6545578-6545597 | None:intergenic | 55.0% | |
| AGGTTGGAAGGAGTCGGTTG+TGG | + | chr4.2:6542146-6542165 | None:intergenic | 55.0% | |
| CAATGGTGACCCCCATGCAT+TGG | - | chr4.2:6545680-6545699 | MS.gene72141:intron | 55.0% | |
| CCTCGGAGGCAAAAGGAAGA+TGG | - | chr4.2:6542163-6542182 | MS.gene72141:CDS | 55.0% | |
| CGATGAGCCACAACACATGC+AGG | - | chr4.2:6546208-6546227 | MS.gene72141:intron | 55.0% | |
| CTTCCAACCTCGGAGGCAAA+AGG | - | chr4.2:6542156-6542175 | MS.gene72141:CDS | 55.0% | |
| GCACGTGCACATGCTGGATT+TGG | - | chr4.2:6543167-6543186 | MS.gene72141:intron | 55.0% | |
| GGCTGAGAAGGAGGAAGAAG+AGG | - | chr4.2:6542226-6542245 | MS.gene72141:CDS | 55.0% | |
| TCCCGGGTTCATAGTGCAGA+AGG | - | chr4.2:6543677-6543696 | MS.gene72141:intron | 55.0% | |
| TCCTTCTCAGCCTCGTCACT+CGG | + | chr4.2:6542218-6542237 | None:intergenic | 55.0% | |
| TCGCCAAACCCTTGTCACGA+TGG | + | chr4.2:6544040-6544059 | None:intergenic | 55.0% | |
| TTCTTGGCACGTGCACATGC+TGG | - | chr4.2:6543161-6543180 | MS.gene72141:intron | 55.0% | |
| TTGGGGGTGGGGAGTTAGAA+GGG | - | chr4.2:6545582-6545601 | MS.gene72141:intron | 55.0% | |
| ! | ACCTCAGGCACAAGAAGCAC+AGG | + | chr4.2:6542613-6542632 | None:intergenic | 55.0% |
| ! | CAACCGACTCCTTCCAACCT+CGG | - | chr4.2:6542146-6542165 | MS.gene72141:CDS | 55.0% |
| ! | CCAACCTTTTCTTGGGGGTG+GGG | - | chr4.2:6545571-6545590 | MS.gene72141:intron | 55.0% |
| ! | CCATCTTCCTTTTGCCTCCG+AGG | + | chr4.2:6542166-6542185 | None:intergenic | 55.0% |
| ! | CCTCAGGCACAAGAAGCACA+GGG | + | chr4.2:6542612-6542631 | None:intergenic | 55.0% |
| ! | CTTCCTTTTGCCTCCGAGGT+TGG | + | chr4.2:6542162-6542181 | None:intergenic | 55.0% |
| ! | CTTTTGCCTCCGAGGTTGGA+AGG | + | chr4.2:6542158-6542177 | None:intergenic | 55.0% |
| ! | GCTTGATGATCACAGGGCAG+TGG | - | chr4.2:6543481-6543500 | MS.gene72141:intron | 55.0% |
| CACAGACACCGCATCACGAG+AGG | + | chr4.2:6546541-6546560 | None:intergenic | 60.0% | |
| CATGGGGGTCACCATTGCCA+AGG | + | chr4.2:6545677-6545696 | None:intergenic | 60.0% | |
| CCAGGAGGGTTTGACTGCTG+AGG | - | chr4.2:6546166-6546185 | MS.gene72141:CDS | 60.0% | |
| CCCCACCCCCAAGAAAAGGT+TGG | + | chr4.2:6545574-6545593 | None:intergenic | 60.0% | |
| CCCTGTGCTTCTTGTGCCTG+AGG | - | chr4.2:6542609-6542628 | MS.gene72141:CDS | 60.0% | |
| CCTCAGCAGTCAAACCCTCC+TGG | + | chr4.2:6546169-6546188 | None:intergenic | 60.0% | |
| CCTCCGAGGTTGGAAGGAGT+CGG | + | chr4.2:6542152-6542171 | None:intergenic | 60.0% | |
| CGGGCCTTGCAGACTGTTCT+TGG | - | chr4.2:6545083-6545102 | MS.gene72141:CDS | 60.0% | |
| CTGCAGGAACCTCATCTCGG+TGG | + | chr4.2:6543587-6543606 | None:intergenic | 60.0% | |
| CTGGTCTGCCTCTCGTGATG+CGG | - | chr4.2:6546530-6546549 | MS.gene72141:CDS | 60.0% | |
| CTTGGGGGTGGGGAGTTAGA+AGG | - | chr4.2:6545581-6545600 | MS.gene72141:intron | 60.0% | |
| GAAATGTAGGCACGGCCCCA+TGG | - | chr4.2:6546589-6546608 | MS.gene72141:CDS | 60.0% | |
| GAGTGACGAGGCTGAGAAGG+AGG | - | chr4.2:6542217-6542236 | MS.gene72141:CDS | 60.0% | |
| GGACAACTCCCTGGTGTTCC+AGG | + | chr4.2:6543957-6543976 | None:intergenic | 60.0% | |
| TGGCTCATCGGGCTCATCCT+TGG | + | chr4.2:6546198-6546217 | None:intergenic | 60.0% | |
| TGGGGGTGGGGAGTTAGAAG+GGG | - | chr4.2:6545583-6545602 | MS.gene72141:intron | 60.0% | |
| CCGACTCCTTCCAACCTCGG+AGG | - | chr4.2:6542149-6542168 | MS.gene72141:CDS | 65.0% | |
| CGCATCACGAGAGGCAGACC+AGG | + | chr4.2:6546532-6546551 | None:intergenic | 65.0% | |
| GCCGAGTGACGAGGCTGAGA+AGG | - | chr4.2:6542214-6542233 | MS.gene72141:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 6542086 | 6546740 | 6542086 | ID=MS.gene72141 |
| chr4.2 | mRNA | 6542086 | 6546740 | 6542086 | ID=MS.gene72141.t1;Parent=MS.gene72141 |
| chr4.2 | exon | 6546423 | 6546740 | 6546423 | ID=MS.gene72141.t1.exon1;Parent=MS.gene72141.t1 |
| chr4.2 | CDS | 6546423 | 6546740 | 6546423 | ID=cds.MS.gene72141.t1;Parent=MS.gene72141.t1 |
| chr4.2 | exon | 6546160 | 6546222 | 6546160 | ID=MS.gene72141.t1.exon2;Parent=MS.gene72141.t1 |
| chr4.2 | CDS | 6546160 | 6546222 | 6546160 | ID=cds.MS.gene72141.t1;Parent=MS.gene72141.t1 |
| chr4.2 | exon | 6544618 | 6545376 | 6544618 | ID=MS.gene72141.t1.exon3;Parent=MS.gene72141.t1 |
| chr4.2 | CDS | 6544618 | 6545376 | 6544618 | ID=cds.MS.gene72141.t1;Parent=MS.gene72141.t1 |
| chr4.2 | exon | 6544349 | 6544483 | 6544349 | ID=MS.gene72141.t1.exon4;Parent=MS.gene72141.t1 |
| chr4.2 | CDS | 6544349 | 6544483 | 6544349 | ID=cds.MS.gene72141.t1;Parent=MS.gene72141.t1 |
| chr4.2 | exon | 6543558 | 6543641 | 6543558 | ID=MS.gene72141.t1.exon5;Parent=MS.gene72141.t1 |
| chr4.2 | CDS | 6543558 | 6543641 | 6543558 | ID=cds.MS.gene72141.t1;Parent=MS.gene72141.t1 |
| chr4.2 | exon | 6542597 | 6542656 | 6542597 | ID=MS.gene72141.t1.exon6;Parent=MS.gene72141.t1 |
| chr4.2 | CDS | 6542597 | 6542656 | 6542597 | ID=cds.MS.gene72141.t1;Parent=MS.gene72141.t1 |
| chr4.2 | exon | 6542417 | 6542503 | 6542417 | ID=MS.gene72141.t1.exon7;Parent=MS.gene72141.t1 |
| chr4.2 | CDS | 6542417 | 6542503 | 6542417 | ID=cds.MS.gene72141.t1;Parent=MS.gene72141.t1 |
| chr4.2 | exon | 6542086 | 6542322 | 6542086 | ID=MS.gene72141.t1.exon8;Parent=MS.gene72141.t1 |
| chr4.2 | CDS | 6542086 | 6542322 | 6542086 | ID=cds.MS.gene72141.t1;Parent=MS.gene72141.t1 |
| Gene Sequence |
| Protein sequence |
