AlfalfaGEDB | MS.gene72352

M. sativa cultivar XinJiangDaYe / MS.gene72352

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF12854.10 PF13041.9 PF14432.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72352.t1	XP_013457603.1	92.3	634	49	0	1	634	1	634	9.40E-250	872.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72352.t1	Q9M4P3	66.0	382	130	0	253	634	275	656	6.3e-154	545.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72352.t1	A0A072UP65	92.3	634	49	0	1	634	1	634	6.7e-250	872.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049824	MS.gene72352	0.823968	1.04E-53	-1.69E-46
MS.gene049825	MS.gene72352	0.810863	9.33E-51	-1.69E-46
MS.gene051247	MS.gene72352	0.807618	4.63E-50	-1.69E-46
MS.gene051700	MS.gene72352	0.808729	2.68E-50	-1.69E-46
MS.gene051720	MS.gene72352	0.804577	2.02E-49	-1.69E-46
MS.gene051744	MS.gene72352	0.807876	4.08E-50	-1.69E-46
MS.gene052584	MS.gene72352	0.805448	1.33E-49	-1.69E-46
MS.gene053226	MS.gene72352	0.824353	8.45E-54	-1.69E-46
MS.gene054576	MS.gene72352	0.809801	1.58E-50	-1.69E-46
MS.gene055778	MS.gene72352	0.802918	4.47E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene036929	MS.gene72352	PPI
MS.gene040140	MS.gene72352	PPI
MS.gene046980	MS.gene72352	PPI
MS.gene27517	MS.gene72352	PPI
MS.gene51848	MS.gene72352	PPI
MS.gene72352	MS.gene040141	PPI
MS.gene87672	MS.gene72352	PPI
MS.gene92776	MS.gene72352	PPI
MS.gene94542	MS.gene72352	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72352.t1	MTR_4g099480	95.899	634	26	0	1	634	1	634	0.0	1283
MS.gene72352.t1	MTR_8g106950	45.318	598	326	1	37	634	170	766	0.0	568
MS.gene72352.t1	MTR_8g106950	29.778	450	259	10	16	428	29	458	2.53e-60	215
MS.gene72352.t1	MTR_8g106910	42.289	629	331	2	37	634	107	734	0.0	541
MS.gene72352.t1	MTR_8g106910	25.391	256	159	5	196	428	48	294	5.88e-14	75.9
MS.gene72352.t1	MTR_7g074040	43.072	599	338	3	37	634	111	707	1.31e-176	518
MS.gene72352.t1	MTR_7g074040	32.222	360	228	7	37	391	15	363	4.72e-55	199
MS.gene72352.t1	MTR_8g065730	43.113	559	310	3	84	634	190	748	3.56e-160	478
MS.gene72352.t1	MTR_8g065730	26.716	408	256	4	62	428	35	440	5.24e-51	189
MS.gene72352.t1	MTR_5g008600	39.179	633	340	6	45	633	37	668	3.84e-160	482

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72352.t1	AT4G16835	64.167	600	214	1	36	634	57	656	0.0	817
MS.gene72352.t1	AT4G16835	19.653	346	228	9	33	360	179	492	9.16e-16	81.3
MS.gene72352.t1	AT4G02750	45.151	598	327	1	37	634	185	781	0.0	561
MS.gene72352.t1	AT4G02750	30.342	468	268	9	4	428	21	473	5.59e-65	228
MS.gene72352.t1	AT1G09410	42.925	629	325	5	39	634	78	705	4.17e-180	528
MS.gene72352.t1	AT1G09410	30.030	333	220	4	43	373	20	341	2.85e-48	180
MS.gene72352.t1	AT1G09410	24.118	340	238	8	37	362	200	533	2.57e-26	114
MS.gene72352.t1	AT1G09410	24.183	306	195	8	198	495	19	295	2.30e-12	70.5
MS.gene72352.t1	AT1G56690	42.237	599	344	2	37	634	107	704	3.67e-173	509
MS.gene72352.t1	AT1G56690	32.110	327	213	3	47	373	24	341	2.64e-53	194

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Find 157 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGGCCAGAGCACTA+TGG	0.483082	8.3:+21193834	MS.gene72352:CDS
AACTCAATGGTAAAGGATTT+TGG	0.135029	8.3:+21193807	MS.gene72352:CDS
AACTTACCAGTAATCGCTGC+AGG	0.528547	8.3:-21194534	None:intergenic
AAGCCACATCCTGCCATATT+TGG	0.215733	8.3:+21193930	MS.gene72352:CDS
AAGGAAGAGAAATCATTGTA+AGG	0.449195	8.3:+21194471	MS.gene72352:CDS
AAGTACATCTCAGCTATAGA+AGG	0.451077	8.3:+21194452	MS.gene72352:CDS
AATAATGTTGTGAAGCCACC+TGG	0.519275	8.3:+21194128	MS.gene72352:CDS
ACAACGTCGTGCACGAGTTT+AGG	0.293675	8.3:+21194171	MS.gene72352:CDS
ACATATCCAGTTGCACTGGT+TGG	0.543925	8.3:-21194032	None:intergenic
ACATGGAATGCAATGATTTC+TGG	0.251962	8.3:+21193636	MS.gene72352:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGAAGAGAAATCATTGTA+AGG	+	chr8.3:21194471-21194490	MS.gene72352:CDS	30.0%
AGGAAGAGAAATCATTGTAA+GGG	+	chr8.3:21194472-21194491	MS.gene72352:CDS	30.0%
ATTAGCATGTATTCTAAGTG+TGG	+	chr8.3:21193558-21193577	MS.gene72352:CDS	30.0%
ATTGGAGATGAAAATGAAGT+TGG	+	chr8.3:21194247-21194266	MS.gene72352:CDS	30.0%
CATGTATAGAAACCAATTCA+GGG	-	chr8.3:21194214-21194233	None:intergenic	30.0%
GAAAATGAGTTTGAAGACTT+TGG	+	chr8.3:21193308-21193327	MS.gene72352:CDS	30.0%
GATTCATAAAAACATGCACA+TGG	+	chr8.3:21193974-21193993	MS.gene72352:CDS	30.0%
GTATTATACGAAACAGTGTT+TGG	-	chr8.3:21192952-21192971	None:intergenic	30.0%
TCATGTATAGAAACCAATTC+AGG	-	chr8.3:21194215-21194234	None:intergenic	30.0%
TTAAGACAATGTTGGAAACT+GGG	+	chr8.3:21193397-21193416	MS.gene72352:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	21192649	21194553	21192649	ID=MS.gene72352
chr8.3	mRNA	21192649	21194553	21192649	ID=MS.gene72352.t1;Parent=MS.gene72352
chr8.3	exon	21192649	21194553	21192649	ID=MS.gene72352.t1.exon1;Parent=MS.gene72352.t1
chr8.3	CDS	21192649	21194553	21192649	ID=cds.MS.gene72352.t1;Parent=MS.gene72352.t1

Gene Sequence

>MS.gene72352

ATGTATTGTTTGCGATTCCTGAGGAGAAAGAAATTAAACGCTTTTTCAACCTCGTCCTTTGTTACTGTAACCAACCACACCAAAACCCATCATGCATATGATCACGATCAAAGCAATGTCATCGCTTCGAACCAGCTCATCGCGAGTTACGTTCGATCCGGTGACATTGATTCTGCTCTCCGCGTGTTTCATAACATGACAGTGAAATCCACGACTACCTGGAACACTATCCTAGCTGCATTTGCAAAGAAACATGGGAATTTCGAACGCGCTCGCCAACTGTTTGATAAAATACCCGAACCAAACACTGTTTCGTATAATACAATGTTGGCGTGTTATTTGCACCATTTTGGAATTCATAATGCCCGTCGTTTCTTTGACCGGATGCCTGTTAGGGATACAGCGTCGTGGAATACTATGATTTCGGGTTATGCTCAGGTTGGGATGATGGATGAGGCGCGGAGATTGTTAGTGGCAATGCCGGAGAAAAACTGTGTTACGTGGAGTGCGATGGTGTCTGGATATGTGGCTTGTGGGGATTTAAATGCGGCTGTGGAGTGTTTTTATGCTGCACCTATGAAGAGTGTGATTACTTGGACTGCAATGATCACTGGGTACATGAAATTTGGGAGGGTGGGAATGGCGGAAATATTGTTTTGGAAAATGAGTTTGAAGACTTTGGTGACCTGGAATGCTATGATTGCTGGGTATGTTGATAATGGTAGAGCAGAGAATGGGTTAAAGCTTTTTAAGACAATGTTGGAAACTGGGGTTAAACCTAATGCTTTGAGCTTGACTAGTGTGTTGTTGGGTTGTAGTGATTTATCAGCTTTGCAGACGGGTAAACAAGTTCATCAGTTAGTTTGTAAATCTCCATTGAATAGGGATACAACCGCAGTAACTTCATTGATTAGCATGTATTCTAAGTGTGGGGATCTTAAGGATTCGTGGGAGTTATTTGTTCAGATTCCGCGGAAAGATGTTGTAACATGGAATGCAATGATTTCTGGTTACGCTCAACATGGAGCTGGCGAAAAGGCTCTTCATTTGTTTGATGAGATGAAAAAGGGTGAGATAAAGCCAGATTGGATTACTTTTGTTGCAGTGTTATTAGCTTGTAACCATGCAGGAATGGTAGATCTTGGGATCAAATATTTTAACTCAATGGTAAAGGATTTTGGTATTAAAACTAGGCCAGAGCACTATGGATGCATGGTTGATCTTCTTGGCCGAGCTGGTAGGTTATCTGAGGCTGTAGATATGATAAAAAGTATGCCTTTTAAGCCACATCCTGCCATATTTGGTACGCTTCTGGGTGCTTGTAGGATTCATAAAAACATGCACATGGCTGAGTTTGCTGCTAAGAATCTGCTTGAGCTTGATCCAACCAGTGCAACTGGATATGTTCAATTGGCTAATGTTTATGCAGCACAAAGCAAATGGGAACATGTTGCTAGAGTCCGAAAATCAATGAAAGAAAATAATGTTGTGAAGCCACCTGGATATAGTTGGGTTGAAATAAACAACGTCGTGCACGAGTTTAGGTCAAATGACAGGCTACACCCTGAATTGGTTTCTATACATGAAAAACTAGATAAATTGGAGATGAAAATGAAGTTGGCTGGTTATGTGCCAGATCTTGAATTTGCATTGCATGATGTGGGAGAGGAGTTGAAAGAACAACTTCTTTTACGGCATAGTGAGAAACTAGCAATTGCATTTGGACTTTTAAAGGTACCATTAGGGGTACCAATCCGGGTGTTTAAAAATTTGAGGGTTTGTGGAGATTGCCACTCTGCGATCAAGTACATCTCAGCTATAGAAGGAAGAGAAATCATTGTAAGGGACACCACAAGGTTTCATCATTTCAAGGATGGGTTCTGCTCCTGCAGCGATTACTGGTAA

Protein sequence

>MS.gene72352.t1

MYCLRFLRRKKLNAFSTSSFVTVTNHTKTHHAYDHDQSNVIASNQLIASYVRSGDIDSALRVFHNMTVKSTTTWNTILAAFAKKHGNFERARQLFDKIPEPNTVSYNTMLACYLHHFGIHNARRFFDRMPVRDTASWNTMISGYAQVGMMDEARRLLVAMPEKNCVTWSAMVSGYVACGDLNAAVECFYAAPMKSVITWTAMITGYMKFGRVGMAEILFWKMSLKTLVTWNAMIAGYVDNGRAENGLKLFKTMLETGVKPNALSLTSVLLGCSDLSALQTGKQVHQLVCKSPLNRDTTAVTSLISMYSKCGDLKDSWELFVQIPRKDVVTWNAMISGYAQHGAGEKALHLFDEMKKGEIKPDWITFVAVLLACNHAGMVDLGIKYFNSMVKDFGIKTRPEHYGCMVDLLGRAGRLSEAVDMIKSMPFKPHPAIFGTLLGACRIHKNMHMAEFAAKNLLELDPTSATGYVQLANVYAAQSKWEHVARVRKSMKENNVVKPPGYSWVEINNVVHEFRSNDRLHPELVSIHEKLDKLEMKMKLAGYVPDLEFALHDVGEELKEQLLLRHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSAIKYISAIEGREIIVRDTTRFHHFKDGFCSCSDYW