Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72426.t1 | XP_003624460.1 | 92.1 | 240 | 17 | 1 | 1 | 240 | 51 | 288 | 1.30E-122 | 449.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72426.t1 | Q9LYV6 | 61.3 | 230 | 78 | 2 | 1 | 229 | 44 | 263 | 1.3e-78 | 294.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72426.t1 | G7KW78 | 92.1 | 240 | 17 | 1 | 1 | 240 | 51 | 288 | 9.1e-123 | 449.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049281 | MS.gene72426 | 0.816001 | 6.93E-52 | -1.69E-46 |
| MS.gene050363 | MS.gene72426 | 0.821597 | 3.71E-53 | -1.69E-46 |
| MS.gene050381 | MS.gene72426 | 0.812365 | 4.40E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene72426 | 0.802425 | 5.64E-49 | -1.69E-46 |
| MS.gene050547 | MS.gene72426 | 0.804633 | 1.97E-49 | -1.69E-46 |
| MS.gene054435 | MS.gene72426 | 0.801273 | 9.73E-49 | -1.69E-46 |
| MS.gene054959 | MS.gene72426 | 0.824346 | 8.48E-54 | -1.69E-46 |
| MS.gene055154 | MS.gene72426 | 0.804028 | 2.63E-49 | -1.69E-46 |
| MS.gene056550 | MS.gene72426 | 0.810438 | 1.15E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene72426 | -0.822108 | 2.83E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008897 | MS.gene72426 | PPI |
| MS.gene46291 | MS.gene72426 | PPI |
| MS.gene067912 | MS.gene72426 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72426.t1 | MTR_7g083570 | 95.833 | 240 | 8 | 1 | 1 | 240 | 51 | 288 | 2.61e-173 | 478 |
| MS.gene72426.t1 | MTR_3g100750 | 47.475 | 198 | 94 | 3 | 38 | 226 | 59 | 255 | 2.83e-61 | 193 |
| MS.gene72426.t1 | MTR_8g069110 | 48.125 | 160 | 82 | 1 | 67 | 226 | 109 | 267 | 2.96e-53 | 173 |
| MS.gene72426.t1 | MTR_2g076350 | 41.951 | 205 | 104 | 4 | 39 | 229 | 25 | 228 | 1.56e-48 | 160 |
| MS.gene72426.t1 | MTR_6g077990 | 39.394 | 198 | 111 | 2 | 31 | 227 | 8 | 197 | 6.01e-46 | 152 |
| MS.gene72426.t1 | MTR_6g077990 | 43.293 | 164 | 93 | 0 | 64 | 227 | 33 | 196 | 2.31e-45 | 150 |
| MS.gene72426.t1 | MTR_1g033750 | 38.857 | 175 | 107 | 0 | 54 | 228 | 48 | 222 | 2.70e-45 | 151 |
| MS.gene72426.t1 | MTR_1g114640 | 38.547 | 179 | 110 | 0 | 48 | 226 | 40 | 218 | 6.08e-45 | 150 |
| MS.gene72426.t1 | MTR_6g077990 | 45.578 | 147 | 80 | 0 | 81 | 227 | 8 | 154 | 6.07e-44 | 145 |
| MS.gene72426.t1 | MTR_8g100065 | 41.975 | 162 | 93 | 1 | 67 | 227 | 22 | 183 | 1.09e-41 | 140 |
| MS.gene72426.t1 | MTR_8g100065 | 41.975 | 162 | 93 | 1 | 67 | 227 | 44 | 205 | 3.07e-41 | 140 |
| MS.gene72426.t1 | MTR_1g114750 | 35.758 | 165 | 106 | 0 | 64 | 228 | 56 | 220 | 1.21e-37 | 131 |
| MS.gene72426.t1 | MTR_1g114690 | 37.654 | 162 | 101 | 0 | 67 | 228 | 56 | 217 | 1.33e-35 | 126 |
| MS.gene72426.t1 | MTR_1g114690 | 36.196 | 163 | 104 | 0 | 66 | 228 | 55 | 217 | 3.97e-35 | 125 |
| MS.gene72426.t1 | MTR_1g115130 | 39.189 | 148 | 90 | 0 | 81 | 228 | 46 | 193 | 4.21e-34 | 122 |
| MS.gene72426.t1 | MTR_1g114680 | 50.926 | 108 | 53 | 0 | 121 | 228 | 55 | 162 | 6.77e-29 | 107 |
| MS.gene72426.t1 | MTR_1g114690 | 30.964 | 197 | 102 | 1 | 66 | 228 | 55 | 251 | 2.25e-28 | 108 |
| MS.gene72426.t1 | MTR_6g077990 | 41.071 | 112 | 66 | 0 | 64 | 175 | 33 | 144 | 1.47e-24 | 95.9 |
| MS.gene72426.t1 | MTR_1g114640 | 31.538 | 130 | 89 | 0 | 48 | 177 | 40 | 169 | 1.94e-24 | 95.9 |
| MS.gene72426.t1 | MTR_8g100065 | 38.739 | 111 | 67 | 1 | 64 | 173 | 19 | 129 | 6.67e-21 | 85.5 |
| MS.gene72426.t1 | MTR_8g100065 | 39.815 | 108 | 64 | 1 | 67 | 173 | 44 | 151 | 9.86e-21 | 85.5 |
| MS.gene72426.t1 | MTR_1g114690 | 32.456 | 114 | 77 | 0 | 66 | 179 | 55 | 168 | 8.78e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72426.t1 | AT5G13200 | 62.174 | 230 | 76 | 2 | 1 | 229 | 44 | 263 | 8.30e-104 | 302 |
| MS.gene72426.t1 | AT5G13200 | 62.644 | 174 | 54 | 3 | 1 | 173 | 44 | 207 | 1.59e-73 | 223 |
| MS.gene72426.t1 | AT2G22475 | 44.670 | 197 | 98 | 3 | 40 | 226 | 96 | 291 | 1.71e-59 | 190 |
| MS.gene72426.t1 | AT1G28200 | 46.429 | 196 | 94 | 3 | 38 | 226 | 63 | 254 | 2.26e-59 | 188 |
| MS.gene72426.t1 | AT1G28200 | 46.429 | 196 | 94 | 3 | 38 | 226 | 63 | 254 | 2.26e-59 | 188 |
| MS.gene72426.t1 | AT5G23370 | 41.875 | 160 | 93 | 0 | 68 | 227 | 55 | 214 | 6.80e-44 | 147 |
| MS.gene72426.t1 | AT5G08350 | 39.326 | 178 | 103 | 1 | 50 | 227 | 41 | 213 | 2.76e-43 | 146 |
| MS.gene72426.t1 | AT5G23360 | 41.615 | 161 | 94 | 0 | 68 | 228 | 47 | 207 | 3.36e-43 | 145 |
| MS.gene72426.t1 | AT5G23350 | 41.615 | 161 | 94 | 0 | 68 | 228 | 55 | 215 | 7.97e-43 | 144 |
| MS.gene72426.t1 | AT4G40100 | 36.364 | 198 | 79 | 5 | 40 | 226 | 55 | 216 | 2.35e-38 | 133 |
| MS.gene72426.t1 | AT2G22475 | 43.537 | 147 | 72 | 3 | 40 | 176 | 96 | 241 | 2.77e-38 | 134 |
| MS.gene72426.t1 | AT4G01600 | 34.906 | 212 | 129 | 3 | 24 | 226 | 13 | 224 | 3.35e-38 | 133 |
| MS.gene72426.t1 | AT4G01600 | 33.816 | 207 | 133 | 3 | 24 | 226 | 13 | 219 | 2.13e-36 | 128 |
| MS.gene72426.t1 | AT4G01600 | 39.130 | 161 | 97 | 1 | 67 | 226 | 25 | 185 | 2.94e-36 | 127 |
Find 57 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCATATGTTTGATTCT+TGG | 0.179773 | 7.4:+23456829 | MS.gene72426:CDS |
| ACGATTGTGCCAGATGTTAT+TGG | 0.273073 | 7.4:-23456874 | None:intergenic |
| CTGTGATTTGCAGTTAAAAC+AGG | 0.342749 | 7.4:+23458040 | MS.gene72426:intron |
| TTCATTGTCTTCAGCTGCAA+TGG | 0.365963 | 7.4:+23458066 | MS.gene72426:CDS |
| TGTTACCTTTCAACAACAAC+AGG | 0.385011 | 7.4:+23458196 | MS.gene72426:CDS |
| TTGTTGTCTGGATGACTACT+TGG | 0.395182 | 7.4:-23456672 | None:intergenic |
| CACCCTCCGGCCAAGTGACT+TGG | 0.405041 | 7.4:+23458293 | MS.gene72426:CDS |
| TCATTGTCTTCAGCTGCAAT+GGG | 0.409086 | 7.4:+23458067 | MS.gene72426:CDS |
| GCCCGTCAACTGTCACAATC+TGG | 0.413594 | 7.4:-23459152 | None:intergenic |
| ACAACAACAGGGCCTGTTGC+AGG | 0.417937 | 7.4:+23458208 | MS.gene72426:CDS |
| ATGGTGCCTTTAGCGAAGAT+TGG | 0.428167 | 7.4:+23459081 | MS.gene72426:CDS |
| AAGTAAAGGGTTCCTGCAAC+AGG | 0.429659 | 7.4:-23458220 | None:intergenic |
| ATGAATATCTGATAAGTAAA+GGG | 0.435046 | 7.4:-23458233 | None:intergenic |
| ACTGTTCCAATCTTCGCTAA+AGG | 0.459341 | 7.4:-23459087 | None:intergenic |
| TTACAAACTGCTTCTGCTGA+TGG | 0.483740 | 7.4:+23456705 | MS.gene72426:CDS |
| GATGAATATCTGATAAGTAA+AGG | 0.486525 | 7.4:-23458234 | None:intergenic |
| GTCGTTGGTACGGCTACGCC+GGG | 0.491352 | 7.4:-23459255 | None:intergenic |
| GCACGTATGGATGATCTTGC+TGG | 0.491754 | 7.4:-23456761 | None:intergenic |
| ATCCAGATTGTGACAGTTGA+CGG | 0.497932 | 7.4:+23459150 | MS.gene72426:CDS |
| TAAGCCTAGCAGTAGTCCTA+TGG | 0.515052 | 7.4:+23456800 | MS.gene72426:CDS |
| AAGCTACCGCCAATAACATC+TGG | 0.518887 | 7.4:+23456865 | MS.gene72426:CDS |
| GGATGACTACTTGGTACAGC+TGG | 0.522699 | 7.4:-23456663 | None:intergenic |
| CTCCAAGTCACTTGGCCGGA+GGG | 0.523356 | 7.4:-23458295 | None:intergenic |
| CTACTGCTAGGCTTATCAAC+AGG | 0.523543 | 7.4:-23456792 | None:intergenic |
| TGATTCTCCCTCATGATCAC+AGG | 0.530214 | 7.4:-23459114 | None:intergenic |
| TCCAGATTGTGACAGTTGAC+GGG | 0.531799 | 7.4:+23459151 | MS.gene72426:CDS |
| TTGAGTTTCACTGCACCCTC+CGG | 0.532381 | 7.4:+23458280 | MS.gene72426:CDS |
| ACAGGACTGTGTTGCACGTA+TGG | 0.537458 | 7.4:-23456774 | None:intergenic |
| GAGGGTGCAGTGAAACTCAA+AGG | 0.539333 | 7.4:-23458277 | None:intergenic |
| CAGGCCCTGTTGTTGTTGAA+AGG | 0.548045 | 7.4:-23458201 | None:intergenic |
| CAGTTAATCCTGTGATCATG+AGG | 0.557822 | 7.4:+23459106 | MS.gene72426:CDS |
| ATTGCAGCTGAAGACAATGA+AGG | 0.560885 | 7.4:-23458064 | None:intergenic |
| ACAAGGACAACCTCAGCCTC+AGG | 0.564940 | 7.4:+23456728 | MS.gene72426:CDS |
| AGGGTGCAGTGAAACTCAAA+GGG | 0.565964 | 7.4:-23458276 | None:intergenic |
| TTGAAGAACTAGTTAGTCGT+TGG | 0.566224 | 7.4:-23459270 | None:intergenic |
| AGTCGTTGGTACGGCTACGC+CGG | 0.571636 | 7.4:-23459256 | None:intergenic |
| GTAGCTCCAAGTCACTTGGC+CGG | 0.578164 | 7.4:-23458299 | None:intergenic |
| GAACTAGTTAGTCGTTGGTA+CGG | 0.588752 | 7.4:-23459265 | None:intergenic |
| TGTAGTAGCTCCAAGTCACT+TGG | 0.593028 | 7.4:-23458303 | None:intergenic |
| ACTGCTTCTGCTGATGGACA+AGG | 0.594269 | 7.4:+23456711 | MS.gene72426:CDS |
| ATTGTGCCAGATGTTATTGG+CGG | 0.596019 | 7.4:-23456871 | None:intergenic |
| GCTCCAAGTCACTTGGCCGG+AGG | 0.599038 | 7.4:-23458296 | None:intergenic |
| ATATGAAGAATTGATTCCAT+AGG | 0.605924 | 7.4:-23456816 | None:intergenic |
| TAGTAATGAACCTGAGGCTG+AGG | 0.610263 | 7.4:-23456738 | None:intergenic |
| GATTCCATAGGACTACTGCT+AGG | 0.615191 | 7.4:-23456804 | None:intergenic |
| TAAAGCAGTAAAGAACCTAT+CGG | 0.619248 | 7.4:+23459209 | MS.gene72426:CDS |
| GCAGTAAAGAACCTATCGGA+AGG | 0.626352 | 7.4:+23459213 | MS.gene72426:CDS |
| AGTGACTTGGAGCTACTACA+AGG | 0.629250 | 7.4:+23458306 | MS.gene72426:CDS |
| GACTGTAAAAGCGATATCAG+AGG | 0.638142 | 7.4:+23458102 | MS.gene72426:CDS |
| AATGTGAGATGCCTTCCGAT+AGG | 0.639873 | 7.4:-23459224 | None:intergenic |
| ACTGTAAAAGCGATATCAGA+GGG | 0.644668 | 7.4:+23458103 | MS.gene72426:CDS |
| TGCTGGTAGTAATGAACCTG+AGG | 0.645046 | 7.4:-23456744 | None:intergenic |
| GTTACCTTTCAACAACAACA+GGG | 0.667635 | 7.4:+23458197 | MS.gene72426:CDS |
| AGTTAATCCTGTGATCATGA+GGG | 0.672652 | 7.4:+23459107 | MS.gene72426:CDS |
| TGTGATTTGCAGTTAAAACA+GGG | 0.680349 | 7.4:+23458041 | MS.gene72426:intron |
| CATTGTCTTCAGCTGCAATG+GGG | 0.684360 | 7.4:+23458068 | MS.gene72426:CDS |
| GTAAAAGCGATATCAGAGGG+TGG | 0.696098 | 7.4:+23458106 | MS.gene72426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATATGAAAATAGTTT+TGG | - | chr7.4:23457751-23457770 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAAAAATAGATTT+TGG | + | chr7.4:23457513-23457532 | MS.gene72426:intron | 10.0% |
| !!! | TAATTTAATTGAATTTTATG+AGG | + | chr7.4:23457099-23457118 | MS.gene72426:intron | 10.0% |
| !!! | TGTATTTATGTTTTATATTA+TGG | - | chr7.4:23458947-23458966 | None:intergenic | 10.0% |
| !! | AGATGATAATTTCAATATTA+AGG | - | chr7.4:23457698-23457717 | None:intergenic | 15.0% |
| !! | CTGTTCATAAATATAATAAA+CGG | - | chr7.4:23458336-23458355 | None:intergenic | 15.0% |
| !! | GATGATAATTTCAATATTAA+GGG | - | chr7.4:23457697-23457716 | None:intergenic | 15.0% |
| !!! | AAATGATTTTTTTAGCAAAA+TGG | + | chr7.4:23457573-23457592 | MS.gene72426:intron | 15.0% |
| !!! | AATTTTTATTAAAATTGTGG+TGG | - | chr7.4:23457916-23457935 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTTCATAGTTTA+AGG | - | chr7.4:23459009-23459028 | None:intergenic | 15.0% |
| !!! | TTTCATATTTTATACTAAGT+TGG | + | chr7.4:23457758-23457777 | MS.gene72426:intron | 15.0% |
| !! | AAAAAAAATCCAAAACAAAC+AGG | + | chr7.4:23457671-23457690 | MS.gene72426:intron | 20.0% |
| !! | ATCAATCTATCTAAATATAG+AGG | - | chr7.4:23456922-23456941 | None:intergenic | 20.0% |
| !! | ATGAATATCTGATAAGTAAA+GGG | - | chr7.4:23458236-23458255 | None:intergenic | 20.0% |
| !! | ATTGAAATGAATGTTTGATA+TGG | + | chr7.4:23459021-23459040 | MS.gene72426:intron | 20.0% |
| !! | CATAAACACTTATTAGTATA+AGG | - | chr7.4:23457178-23457197 | None:intergenic | 20.0% |
| !!! | AAAATTTCTATTACACCTTT+TGG | + | chr7.4:23458976-23458995 | MS.gene72426:intron | 20.0% |
| !!! | ATATATCTATGAGAGTTTTT+GGG | + | chr7.4:23457830-23457849 | MS.gene72426:intron | 20.0% |
| !!! | TATATATCTATGAGAGTTTT+TGG | + | chr7.4:23457829-23457848 | MS.gene72426:intron | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | - | chr7.4:23457510-23457529 | None:intergenic | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | + | chr7.4:23457546-23457565 | MS.gene72426:intron | 20.0% |
| ! | ACTCTCATAGATATATAGTA+AGG | - | chr7.4:23457826-23457845 | None:intergenic | 25.0% |
| ! | GATGAATATCTGATAAGTAA+AGG | - | chr7.4:23458237-23458256 | None:intergenic | 25.0% |
| ! | TAATCCACTCAAGTAATTTA+CGG | - | chr7.4:23458789-23458808 | None:intergenic | 25.0% |
| ! | TTATATTGTGTAATAGGTGA+TGG | + | chr7.4:23459062-23459081 | MS.gene72426:intron | 25.0% |
| ! | TTCTTCATATGTTTGATTCT+TGG | + | chr7.4:23456829-23456848 | MS.gene72426:CDS | 25.0% |
| !! | ATATGAAGAATTGATTCCAT+AGG | - | chr7.4:23456819-23456838 | None:intergenic | 25.0% |
| !! | TCATTTTCTAACTTCAAAAC+TGG | + | chr7.4:23458628-23458647 | MS.gene72426:intron | 25.0% |
| !! | TTAAGTTTGTTTATCCAGAT+AGG | + | chr7.4:23457212-23457231 | MS.gene72426:intron | 25.0% |
| !! | TTTTATGCTAACAATATTGC+TGG | - | chr7.4:23458678-23458697 | None:intergenic | 25.0% |
| !!! | CTATTGAACAAATTTTGACA+AGG | - | chr7.4:23458360-23458379 | None:intergenic | 25.0% |
| !!! | GACTTGTTATATTGTGTAAT+AGG | + | chr7.4:23459056-23459075 | MS.gene72426:intron | 25.0% |
| !!! | TAAATTACTTGAGTGGATTA+GGG | + | chr7.4:23458789-23458808 | MS.gene72426:intron | 25.0% |
| !!! | TACAATAGTCAATTTGTTGT+TGG | + | chr7.4:23458557-23458576 | MS.gene72426:intron | 25.0% |
| AAAATGAACACATGAGAGAA+CGG | - | chr7.4:23458615-23458634 | None:intergenic | 30.0% | |
| ACGTCATATATGTAGTACTA+CGG | + | chr7.4:23458825-23458844 | MS.gene72426:intron | 30.0% | |
| AGATATATAGTAAGGAGCTT+AGG | - | chr7.4:23457818-23457837 | None:intergenic | 30.0% | |
| TAAAGCAGTAAAGAACCTAT+CGG | + | chr7.4:23459209-23459228 | MS.gene72426:CDS | 30.0% | |
| TAGTCTAGCATCTCATAATT+TGG | + | chr7.4:23457242-23457261 | MS.gene72426:intron | 30.0% | |
| TCACATATTGACACAAAAGA+GGG | - | chr7.4:23458906-23458925 | None:intergenic | 30.0% | |
| TTATGAGATGCTAGACTATT+AGG | - | chr7.4:23457240-23457259 | None:intergenic | 30.0% | |
| ! | CAAAGTTCTGATAATATCCA+CGG | - | chr7.4:23457882-23457901 | None:intergenic | 30.0% |
| ! | GTAAATTACTTGAGTGGATT+AGG | + | chr7.4:23458788-23458807 | MS.gene72426:intron | 30.0% |
| ! | TGTGATTTGCAGTTAAAACA+GGG | + | chr7.4:23458041-23458060 | MS.gene72426:intron | 30.0% |
| ! | TTGTTCAATAGAGCATTAGA+GGG | + | chr7.4:23458369-23458388 | MS.gene72426:intron | 30.0% |
| ! | TTGTTGTTGGTAGACATAAT+TGG | + | chr7.4:23458570-23458589 | MS.gene72426:intron | 30.0% |
| ! | TTTGTTCAATAGAGCATTAG+AGG | + | chr7.4:23458368-23458387 | MS.gene72426:intron | 30.0% |
| ! | TTTTTGCGTGAGTCAATTTA+GGG | + | chr7.4:23457329-23457348 | MS.gene72426:intron | 30.0% |
| !! | TATATCGAGCATTGATAAGT+AGG | + | chr7.4:23458417-23458436 | MS.gene72426:intron | 30.0% |
| !!! | TTTTTTGCGTGAGTCAATTT+AGG | + | chr7.4:23457328-23457347 | MS.gene72426:intron | 30.0% |
| AAATGAACACATGAGAGAAC+GGG | - | chr7.4:23458614-23458633 | None:intergenic | 35.0% | |
| AAGCTGGTATTGTTGTAATC+TGG | - | chr7.4:23458852-23458871 | None:intergenic | 35.0% | |
| ACTGTAAAAGCGATATCAGA+GGG | + | chr7.4:23458103-23458122 | MS.gene72426:CDS | 35.0% | |
| AGTTAATCCTGTGATCATGA+GGG | + | chr7.4:23459107-23459126 | MS.gene72426:CDS | 35.0% | |
| AGTTCCGTAAATTACTTGAG+TGG | + | chr7.4:23458782-23458801 | MS.gene72426:intron | 35.0% | |
| CTCACATATTGACACAAAAG+AGG | - | chr7.4:23458907-23458926 | None:intergenic | 35.0% | |
| CTTACTTTCATAAGCTCTCT+AGG | + | chr7.4:23457059-23457078 | MS.gene72426:intron | 35.0% | |
| GTTACCTTTCAACAACAACA+GGG | + | chr7.4:23458197-23458216 | MS.gene72426:CDS | 35.0% | |
| TAGACATAATTGGCCGAATT+CGG | + | chr7.4:23458580-23458599 | MS.gene72426:intron | 35.0% | |
| TAGACTATTAGGTTCCTATC+TGG | - | chr7.4:23457229-23457248 | None:intergenic | 35.0% | |
| TGTTACCTTTCAACAACAAC+AGG | + | chr7.4:23458196-23458215 | MS.gene72426:CDS | 35.0% | |
| TTGCCTAACATACACATGAA+GGG | + | chr7.4:23457977-23457996 | MS.gene72426:intron | 35.0% | |
| TTTGCCTAACATACACATGA+AGG | + | chr7.4:23457976-23457995 | MS.gene72426:intron | 35.0% | |
| ! | AATCCTTCTAGAAGTAAGGA+GGG | - | chr7.4:23456965-23456984 | None:intergenic | 35.0% |
| ! | AGTCAATCCTTCTAGAAGTA+AGG | - | chr7.4:23456969-23456988 | None:intergenic | 35.0% |
| ! | CTGTGATTTGCAGTTAAAAC+AGG | + | chr7.4:23458040-23458059 | MS.gene72426:intron | 35.0% |
| ! | GTTTAAGGCTCTTTACCAAA+AGG | - | chr7.4:23458994-23459013 | None:intergenic | 35.0% |
| ! | TATTAAGGGCCTGTTTGTTT+TGG | - | chr7.4:23457683-23457702 | None:intergenic | 35.0% |
| !!! | AAAGCTGCTTTTTTGTTGTC+TGG | - | chr7.4:23456687-23456706 | None:intergenic | 35.0% |
| !!! | GTCTTTTTCAGCTTCTCATT+TGG | - | chr7.4:23458169-23458188 | None:intergenic | 35.0% |
| ACGATTGTGCCAGATGTTAT+TGG | - | chr7.4:23456877-23456896 | None:intergenic | 40.0% | |
| ACGGGATTAATCACCGAATT+CGG | - | chr7.4:23458596-23458615 | None:intergenic | 40.0% | |
| ACTGTTCCAATCTTCGCTAA+AGG | - | chr7.4:23459090-23459109 | None:intergenic | 40.0% | |
| ATAAGTAGGTAGACACCTGA+GGG | + | chr7.4:23458431-23458450 | MS.gene72426:intron | 40.0% | |
| ATCCAGATTGTGACAGTTGA+CGG | + | chr7.4:23459150-23459169 | MS.gene72426:CDS | 40.0% | |
| ATTGACACAAAAGAGGGACA+AGG | - | chr7.4:23458900-23458919 | None:intergenic | 40.0% | |
| ATTGCAGCTGAAGACAATGA+AGG | - | chr7.4:23458067-23458086 | None:intergenic | 40.0% | |
| ATTGTGCCAGATGTTATTGG+CGG | - | chr7.4:23456874-23456893 | None:intergenic | 40.0% | |
| CAGTTAATCCTGTGATCATG+AGG | + | chr7.4:23459106-23459125 | MS.gene72426:CDS | 40.0% | |
| GACTGTAAAAGCGATATCAG+AGG | + | chr7.4:23458102-23458121 | MS.gene72426:CDS | 40.0% | |
| TAACCCTCCTTACTTCTAGA+AGG | + | chr7.4:23456959-23456978 | MS.gene72426:intron | 40.0% | |
| TCATTGTCTTCAGCTGCAAT+GGG | + | chr7.4:23458067-23458086 | MS.gene72426:CDS | 40.0% | |
| TGTTCCATTATACTACCCTC+AGG | - | chr7.4:23458449-23458468 | None:intergenic | 40.0% | |
| TTACAAACTGCTTCTGCTGA+TGG | + | chr7.4:23456705-23456724 | MS.gene72426:CDS | 40.0% | |
| TTCATTGTCTTCAGCTGCAA+TGG | + | chr7.4:23458066-23458085 | MS.gene72426:CDS | 40.0% | |
| TTGACACAAAAGAGGGACAA+GGG | - | chr7.4:23458899-23458918 | None:intergenic | 40.0% | |
| TTGTTGTCTGGATGACTACT+TGG | - | chr7.4:23456675-23456694 | None:intergenic | 40.0% | |
| ! | AGTTCTGATAATATCCACGG+TGG | - | chr7.4:23457879-23457898 | None:intergenic | 40.0% |
| ! | CAATCCTTCTAGAAGTAAGG+AGG | - | chr7.4:23456966-23456985 | None:intergenic | 40.0% |
| ! | GGGTAGTATAATGGAACAAG+TGG | + | chr7.4:23458451-23458470 | MS.gene72426:intron | 40.0% |
| !!! | GGGCATGATTTTTGGTTCAT+GGG | + | chr7.4:23459171-23459190 | MS.gene72426:CDS | 40.0% |
| AAGCTACCGCCAATAACATC+TGG | + | chr7.4:23456865-23456884 | MS.gene72426:CDS | 45.0% | |
| AAGTAAAGGGTTCCTGCAAC+AGG | - | chr7.4:23458223-23458242 | None:intergenic | 45.0% | |
| AATGTGAGATGCCTTCCGAT+AGG | - | chr7.4:23459227-23459246 | None:intergenic | 45.0% | |
| AGGGTGCAGTGAAACTCAAA+GGG | - | chr7.4:23458279-23458298 | None:intergenic | 45.0% | |
| ATGGTGCCTTTAGCGAAGAT+TGG | + | chr7.4:23459081-23459100 | MS.gene72426:CDS | 45.0% | |
| CATTGTCTTCAGCTGCAATG+GGG | + | chr7.4:23458068-23458087 | MS.gene72426:CDS | 45.0% | |
| CCTAACATACACATGAAGGG+CGG | + | chr7.4:23457980-23457999 | MS.gene72426:intron | 45.0% | |
| CTACTGCTAGGCTTATCAAC+AGG | - | chr7.4:23456795-23456814 | None:intergenic | 45.0% | |
| GACACCTGAGGGTAGTATAA+TGG | + | chr7.4:23458442-23458461 | MS.gene72426:intron | 45.0% | |
| GATAAGTAGGTAGACACCTG+AGG | + | chr7.4:23458430-23458449 | MS.gene72426:intron | 45.0% | |
| GATTCCATAGGACTACTGCT+AGG | - | chr7.4:23456807-23456826 | None:intergenic | 45.0% | |
| GCAGTAAAGAACCTATCGGA+AGG | + | chr7.4:23459213-23459232 | MS.gene72426:CDS | 45.0% | |
| GTAAAAGCGATATCAGAGGG+TGG | + | chr7.4:23458106-23458125 | MS.gene72426:CDS | 45.0% | |
| GTCGCAAAGGTAGACACAAT+TGG | - | chr7.4:23458748-23458767 | None:intergenic | 45.0% | |
| GTGGATCGAATCATGCTCTA+AGG | - | chr7.4:23457860-23457879 | None:intergenic | 45.0% | |
| TAAGCCTAGCAGTAGTCCTA+TGG | + | chr7.4:23456800-23456819 | MS.gene72426:CDS | 45.0% | |
| TAGCTGCTCTATAGTCGCAA+AGG | - | chr7.4:23458761-23458780 | None:intergenic | 45.0% | |
| TAGTAATGAACCTGAGGCTG+AGG | - | chr7.4:23456741-23456760 | None:intergenic | 45.0% | |
| TCCAGATTGTGACAGTTGAC+GGG | + | chr7.4:23459151-23459170 | MS.gene72426:CDS | 45.0% | |
| TGACACAAAAGAGGGACAAG+GGG | - | chr7.4:23458898-23458917 | None:intergenic | 45.0% | |
| TGATTCTCCCTCATGATCAC+AGG | - | chr7.4:23459117-23459136 | None:intergenic | 45.0% | |
| TGCTGGTAGTAATGAACCTG+AGG | - | chr7.4:23456747-23456766 | None:intergenic | 45.0% | |
| TGTAGTAGCTCCAAGTCACT+TGG | - | chr7.4:23458306-23458325 | None:intergenic | 45.0% | |
| ! | AGTGACTTGGAGCTACTACA+AGG | + | chr7.4:23458306-23458325 | MS.gene72426:CDS | 45.0% |
| ! | ATCTCACATTTTGTTGCGCC+CGG | + | chr7.4:23459237-23459256 | MS.gene72426:CDS | 45.0% |
| !! | CAGTTGACGGGCATGATTTT+TGG | + | chr7.4:23459163-23459182 | MS.gene72426:CDS | 45.0% |
| !!! | CGGGCATGATTTTTGGTTCA+TGG | + | chr7.4:23459170-23459189 | MS.gene72426:CDS | 45.0% |
| !!! | TATAATTTTTATTAAAATTG+TGG | - | chr7.4:23457919-23457938 | None:intergenic | 5.0% |
| ACAGGACTGTGTTGCACGTA+TGG | - | chr7.4:23456777-23456796 | None:intergenic | 50.0% | |
| CCGCCCTTCATGTGTATGTT+AGG | - | chr7.4:23457983-23458002 | None:intergenic | 50.0% | |
| GCACGTATGGATGATCTTGC+TGG | - | chr7.4:23456764-23456783 | None:intergenic | 50.0% | |
| GGATGACTACTTGGTACAGC+TGG | - | chr7.4:23456666-23456685 | None:intergenic | 50.0% | |
| TTGAGTTTCACTGCACCCTC+CGG | + | chr7.4:23458280-23458299 | MS.gene72426:CDS | 50.0% | |
| ! | ACTGCTTCTGCTGATGGACA+AGG | + | chr7.4:23456711-23456730 | MS.gene72426:CDS | 50.0% |
| ! | CAGGCCCTGTTGTTGTTGAA+AGG | - | chr7.4:23458204-23458223 | None:intergenic | 50.0% |
| ! | GAGGGTGCAGTGAAACTCAA+AGG | - | chr7.4:23458280-23458299 | None:intergenic | 50.0% |
| ACAACAACAGGGCCTGTTGC+AGG | + | chr7.4:23458208-23458227 | MS.gene72426:CDS | 55.0% | |
| ACAAGGACAACCTCAGCCTC+AGG | + | chr7.4:23456728-23456747 | MS.gene72426:CDS | 55.0% | |
| CACAAAAGAGGGACAAGGGG+TGG | - | chr7.4:23458895-23458914 | None:intergenic | 55.0% | |
| CTAGCATAGCGTAGCGAAGC+TGG | - | chr7.4:23458868-23458887 | None:intergenic | 55.0% | |
| GAGCATGATTCGATCCACCG+TGG | + | chr7.4:23457862-23457881 | MS.gene72426:intron | 55.0% | |
| GCCCGTCAACTGTCACAATC+TGG | - | chr7.4:23459155-23459174 | None:intergenic | 55.0% | |
| GTAGCTCCAAGTCACTTGGC+CGG | - | chr7.4:23458302-23458321 | None:intergenic | 55.0% | |
| AGTCGTTGGTACGGCTACGC+CGG | - | chr7.4:23459259-23459278 | None:intergenic | 60.0% | |
| CTCCAAGTCACTTGGCCGGA+GGG | - | chr7.4:23458298-23458317 | None:intergenic | 60.0% | |
| CACCCTCCGGCCAAGTGACT+TGG | + | chr7.4:23458293-23458312 | MS.gene72426:CDS | 65.0% | |
| GCTCCAAGTCACTTGGCCGG+AGG | - | chr7.4:23458299-23458318 | None:intergenic | 65.0% | |
| GTCGTTGGTACGGCTACGCC+GGG | - | chr7.4:23459258-23459277 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 23456654 | 23459284 | 23456654 | ID=MS.gene72426 |
| chr7.4 | mRNA | 23456654 | 23459284 | 23456654 | ID=MS.gene72426.t1;Parent=MS.gene72426 |
| chr7.4 | exon | 23456654 | 23456894 | 23456654 | ID=MS.gene72426.t1.exon1;Parent=MS.gene72426.t1 |
| chr7.4 | CDS | 23456654 | 23456894 | 23456654 | ID=cds.MS.gene72426.t1;Parent=MS.gene72426.t1 |
| chr7.4 | exon | 23458053 | 23458327 | 23458053 | ID=MS.gene72426.t1.exon2;Parent=MS.gene72426.t1 |
| chr7.4 | CDS | 23458053 | 23458327 | 23458053 | ID=cds.MS.gene72426.t1;Parent=MS.gene72426.t1 |
| chr7.4 | exon | 23459078 | 23459284 | 23459078 | ID=MS.gene72426.t1.exon3;Parent=MS.gene72426.t1 |
| chr7.4 | CDS | 23459078 | 23459284 | 23459078 | ID=cds.MS.gene72426.t1;Parent=MS.gene72426.t1 |
| Gene Sequence |
| Protein sequence |
