AlfalfaGEDB | MS.gene72426

M. sativa cultivar XinJiangDaYe / MS.gene72426

KEGG: -
GO: -
PFAM: PF02893.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72426.t1	XP_003624460.1	92.1	240	17	1	1	240	51	288	1.30E-122	449.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72426.t1	Q9LYV6	61.3	230	78	2	1	229	44	263	1.3e-78	294.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72426.t1	G7KW78	92.1	240	17	1	1	240	51	288	9.1e-123	449.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049281	MS.gene72426	0.816001	6.93E-52	-1.69E-46
MS.gene050363	MS.gene72426	0.821597	3.71E-53	-1.69E-46
MS.gene050381	MS.gene72426	0.812365	4.40E-51	-1.69E-46
MS.gene050479	MS.gene72426	0.802425	5.64E-49	-1.69E-46
MS.gene050547	MS.gene72426	0.804633	1.97E-49	-1.69E-46
MS.gene054435	MS.gene72426	0.801273	9.73E-49	-1.69E-46
MS.gene054959	MS.gene72426	0.824346	8.48E-54	-1.69E-46
MS.gene055154	MS.gene72426	0.804028	2.63E-49	-1.69E-46
MS.gene056550	MS.gene72426	0.810438	1.15E-50	-1.69E-46
MS.gene06077	MS.gene72426	-0.822108	2.83E-53	-1.69E-46

Showing 1 to 10 of 10 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene008897	MS.gene72426	PPI
MS.gene067912	MS.gene72426	PPI
MS.gene46291	MS.gene72426	PPI

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72426.t1	MTR_7g083570	95.833	240	8	1	1	240	51	288	2.61e-173	478
MS.gene72426.t1	MTR_3g100750	47.475	198	94	3	38	226	59	255	2.83e-61	193
MS.gene72426.t1	MTR_8g069110	48.125	160	82	1	67	226	109	267	2.96e-53	173
MS.gene72426.t1	MTR_2g076350	41.951	205	104	4	39	229	25	228	1.56e-48	160
MS.gene72426.t1	MTR_6g077990	39.394	198	111	2	31	227	8	197	6.01e-46	152
MS.gene72426.t1	MTR_6g077990	43.293	164	93	0	64	227	33	196	2.31e-45	150
MS.gene72426.t1	MTR_1g033750	38.857	175	107	0	54	228	48	222	2.70e-45	151
MS.gene72426.t1	MTR_1g114640	38.547	179	110	0	48	226	40	218	6.08e-45	150
MS.gene72426.t1	MTR_6g077990	45.578	147	80	0	81	227	8	154	6.07e-44	145
MS.gene72426.t1	MTR_8g100065	41.975	162	93	1	67	227	22	183	1.09e-41	140

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72426.t1	AT5G13200	62.174	230	76	2	1	229	44	263	8.30e-104	302
MS.gene72426.t1	AT5G13200	62.644	174	54	3	1	173	44	207	1.59e-73	223
MS.gene72426.t1	AT2G22475	44.670	197	98	3	40	226	96	291	1.71e-59	190
MS.gene72426.t1	AT1G28200	46.429	196	94	3	38	226	63	254	2.26e-59	188
MS.gene72426.t1	AT1G28200	46.429	196	94	3	38	226	63	254	2.26e-59	188
MS.gene72426.t1	AT5G23370	41.875	160	93	0	68	227	55	214	6.80e-44	147
MS.gene72426.t1	AT5G08350	39.326	178	103	1	50	227	41	213	2.76e-43	146
MS.gene72426.t1	AT5G23360	41.615	161	94	0	68	228	47	207	3.36e-43	145
MS.gene72426.t1	AT5G23350	41.615	161	94	0	68	228	55	215	7.97e-43	144
MS.gene72426.t1	AT4G40100	36.364	198	79	5	40	226	55	216	2.35e-38	133

Showing 1 to 10 of 14 entries

Previous1 2Next

Find 57 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTACCGCCAATAACATC+TGG	0.518887	7.4:+23456865	MS.gene72426:CDS
AAGTAAAGGGTTCCTGCAAC+AGG	0.429659	7.4:-23458220	None:intergenic
AATGTGAGATGCCTTCCGAT+AGG	0.639873	7.4:-23459224	None:intergenic
ACAACAACAGGGCCTGTTGC+AGG	0.417937	7.4:+23458208	MS.gene72426:CDS
ACAAGGACAACCTCAGCCTC+AGG	0.564940	7.4:+23456728	MS.gene72426:CDS
ACAGGACTGTGTTGCACGTA+TGG	0.537458	7.4:-23456774	None:intergenic
ACGATTGTGCCAGATGTTAT+TGG	0.273073	7.4:-23456874	None:intergenic
ACTGCTTCTGCTGATGGACA+AGG	0.594269	7.4:+23456711	MS.gene72426:CDS
ACTGTAAAAGCGATATCAGA+GGG	0.644668	7.4:+23458103	MS.gene72426:CDS
ACTGTTCCAATCTTCGCTAA+AGG	0.459341	7.4:-23459087	None:intergenic

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAACACATGAGAGAA+CGG	-	chr7.4:23458615-23458634	None:intergenic	30.0%
ACGTCATATATGTAGTACTA+CGG	+	chr7.4:23458825-23458844	MS.gene72426:intron	30.0%
AGATATATAGTAAGGAGCTT+AGG	-	chr7.4:23457818-23457837	None:intergenic	30.0%
TAAAGCAGTAAAGAACCTAT+CGG	+	chr7.4:23459209-23459228	MS.gene72426:CDS	30.0%
TAGTCTAGCATCTCATAATT+TGG	+	chr7.4:23457242-23457261	MS.gene72426:intron	30.0%
TCACATATTGACACAAAAGA+GGG	-	chr7.4:23458906-23458925	None:intergenic	30.0%
TTATGAGATGCTAGACTATT+AGG	-	chr7.4:23457240-23457259	None:intergenic	30.0%
AAATGAACACATGAGAGAAC+GGG	-	chr7.4:23458614-23458633	None:intergenic	35.0%
AAGCTGGTATTGTTGTAATC+TGG	-	chr7.4:23458852-23458871	None:intergenic	35.0%
ACTGTAAAAGCGATATCAGA+GGG	+	chr7.4:23458103-23458122	MS.gene72426:CDS	35.0%

Showing 1 to 10 of 139 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	23456654	23459284	23456654	ID=MS.gene72426
chr7.4	mRNA	23456654	23459284	23456654	ID=MS.gene72426.t1;Parent=MS.gene72426
chr7.4	exon	23456654	23456894	23456654	ID=MS.gene72426.t1.exon1;Parent=MS.gene72426.t1
chr7.4	CDS	23456654	23456894	23456654	ID=cds.MS.gene72426.t1;Parent=MS.gene72426.t1
chr7.4	exon	23458053	23458327	23458053	ID=MS.gene72426.t1.exon2;Parent=MS.gene72426.t1
chr7.4	CDS	23458053	23458327	23458053	ID=cds.MS.gene72426.t1;Parent=MS.gene72426.t1
chr7.4	exon	23459078	23459284	23459078	ID=MS.gene72426.t1.exon3;Parent=MS.gene72426.t1
chr7.4	CDS	23459078	23459284	23459078	ID=cds.MS.gene72426.t1;Parent=MS.gene72426.t1

Gene Sequence

>MS.gene72426

ATGGGAGCACCAGCTGTACCAAGTAGTCATCCAGACAACAAAAAAGCAGCTTTACAAACTGCTTCTGCTGATGGACAAGGACAACCTCAGCCTCAGGTTCATTACTACCAGCAAGATCATCCATACGTGCAACACAGTCCTGTTGATAAGCCTAGCAGTAGTCCTATGGAATCAATTCTTCATATGTTTGATTCTTGGAGTAAAAAAGCTGAAGCTACCGCCAATAACATCTGGCACAATCGTGAGTGACTAATTTTTATTCATTCCTCTATATTTAGATAGATTGATAGACTGATTTTAATTAATAACCCTCCTTACTTCTAGAAGGATTGACTTATTTGATCTTTTCTACTCACAGAAGCACTTGTGAGATCGTTTGTGATATTTTATGAAAATTGTTTTCAGCTTACTTTCATAAGCTCTCTAGGATAACTTATGCAAAAAATAATTTAATTGAATTTTATGAGGATAACTTATGCAAAAAACAATTTAATTGAATTTTATGTTTTGTTATAGAAATACCTTATACTAATAAGTGTTTATGCTATAAGCTGCAAATTAAGTTTGTTTATCCAGATAGGAACCTAATAGTCTAGCATCTCATAATTTGGTATTGAAAATTAATAATTATAAAATAGTATTTGAAATTAAAAATTGTCAATATATTAAGTTAGTTTTTTGCGTGAGTCAATTTAGGGTGCGTTTGTTTCAGCTTTAAAAAAAAAATAGATTTTGAGTTAAAAGAATCTAGAGATTTTTTTTTAGAGATTTTTAAAAAAATCTAAAGTTATTTCTGTTTGTCTACTATCATAAAAATCATTTTTTTGAGATTTGAAACACTTACACTTGAGTTCCTTGCATTAAGAAAAAAATAGATTTTGGAAAAGCTACTTGAAATAGATTTTCATTTTGAGGCTAAAAATGATTTTTTTAGCAAAATGGATTTTTTAAAAATCTCAAACAAACACAACAAAAACTAAAAAAGTGATTTTTTACTCAAAAAAATAGATTTTTTTCAAAAAAAATCCAAAACAAACAGGCCCTTAATATTGAAATTATCATCTAGAACTAAGATCTACTAGTATTTTCAGTTTCCAAAACTATTTTCATATTTTATACTAAGTTGGTAAATTATTTTACTTCAGTCATTAAATTGTATATCCTAAGCTCCTTACTATATATCTATGAGAGTTTTTGGGTAAGCCTTAGAGCATGATTCGATCCACCGTGGATATTATCAGAACTTTGATGTCATTGAGCCACCACAATTTTAATAAAAATTATAGTTTCGAGCTTCGACAAAATTATAGTGTCAATGTGATTTTGCCTAACATACACATGAAGGGCGGCTAAATCTTCGATTTTTATATGATGTTTTTGTTACTACTGTGATTTGCAGTTAAAACAGGGCCTTCATTGTCTTCAGCTGCAATGGGGAAGATGAATCTGACTGTAAAAGCGATATCAGAGGGTGGATTTGAGTCACTTTACAAACAAATATTCACTACTTATCCAAATGAGAAGCTGAAAAAGACATTTGCTTGTTACCTTTCAACAACAACAGGGCCTGTTGCAGGAACCCTTTACTTATCAGATATTCATCTAGCATTTTGCAGTGATCGCCCTTTGAGTTTCACTGCACCCTCCGGCCAAGTGACTTGGAGCTACTACAAGGTACTCCGTTTATTATATTTATGAACAGTCCTTGTCAAAATTTGTTCAATAGAGCATTAGAGGGATAACTATATAGAGTTTAATGATTATATATCGAGCATTGATAAGTAGGTAGACACCTGAGGGTAGTATAATGGAACAAGTGGAGCTGAAAGTCTACGACTAACGAGCATAGTATTATTACAGTGTTTTGTACTTTGTAACTCTAGTTCAATGCATAATAGTAAAGTACAATAGTCAATTTGTTGTTGGTAGACATAATTGGCCGAATTCGGTGATTAATCCCGTTCTCTCATGTGTTCATTTTCTAACTTCAAAACTGGATTTGCTATTTTTGAAGTATCTTACCAGCAATATTGTTAGCATAAAATGTAAATTGCAAGCAATGAAACACGATCGTTTGTTTACGCAATTCTGCCAATTGTGTCTACCTTTGCGACTATAGAGCAGCTATAGTTCCGTAAATTACTTGAGTGGATTAGGGTTTACAGTGTTACACGTCATATATGTAGTACTACGGTCCAGATTACAACAATACCAGCTTCGCTACGCTATGCTAGCTCACCACCCCTTGTCCCTCTTTTGTGTCAATATGTGAGTCATACTCAACAAATAGCCATAATATAAAACATAAATACATGATTCTGTAAAATTTCTATTACACCTTTTGGTAAAGAGCCTTAAACTATGAAAATTGAAATGAATGTTTGATATGGTGTATGAAATTTGACTTGTTATATTGTGTAATAGGTGATGGTGCCTTTAGCGAAGATTGGAACAGTTAATCCTGTGATCATGAGGGAGAATCAATCAGAGAAGTATATCCAGATTGTGACAGTTGACGGGCATGATTTTTGGTTCATGGGTTTTGTTAATTATGATAAAGCAGTAAAGAACCTATCGGAAGGCATCTCACATTTTGTTGCGCCCGGCGTAGCCGTACCAACGACTAACTAG

Protein sequence

>MS.gene72426.t1

MGAPAVPSSHPDNKKAALQTASADGQGQPQPQVHYYQQDHPYVQHSPVDKPSSSPMESILHMFDSWSKKAEATANNIWHNLKTGPSLSSAAMGKMNLTVKAISEGGFESLYKQIFTTYPNEKLKKTFACYLSTTTGPVAGTLYLSDIHLAFCSDRPLSFTAPSGQVTWSYYKVMVPLAKIGTVNPVIMRENQSEKYIQIVTVDGHDFWFMGFVNYDKAVKNLSEGISHFVAPGVAVPTTN