AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72842

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72842.t1 MTR_5g026930 99.331 598 4 0 1 598 1 598 0.0 1243
MS.gene72842.t1 MTR_5g026930 99.599 499 2 0 1 499 1 499 0.0 1038
MS.gene72842.t1 MTR_8g071280 76.000 600 138 3 1 598 1 596 0.0 954
MS.gene72842.t1 MTR_1g101370 45.710 606 301 12 11 590 14 617 0.0 545
MS.gene72842.t1 MTR_0019s0120 48.767 527 257 8 72 590 105 626 8.56e-180 523
MS.gene72842.t1 MTR_8g432680 47.917 528 264 9 72 590 105 630 1.39e-178 520
MS.gene72842.t1 MTR_8g100075 46.970 528 266 8 72 590 98 620 6.94e-178 518
MS.gene72842.t1 MTR_7g076170 47.874 541 261 11 73 598 102 636 1.69e-173 507
MS.gene72842.t1 MTR_8g055840 43.000 600 312 11 13 590 9 600 1.16e-167 491
MS.gene72842.t1 MTR_5g040360 41.833 600 318 10 13 590 9 599 3.26e-167 489
MS.gene72842.t1 MTR_4g098890 44.040 604 300 12 13 589 10 602 1.09e-164 510
MS.gene72842.t1 MTR_7g006060 46.332 518 268 7 57 566 28 543 6.48e-164 480
MS.gene72842.t1 MTR_3g040370 42.905 599 310 14 13 590 10 597 4.48e-163 479
MS.gene72842.t1 MTR_7g076150 43.879 531 272 9 71 591 74 588 1.22e-153 454
MS.gene72842.t1 MTR_5g080720 42.857 560 295 11 38 587 93 637 8.56e-153 454
MS.gene72842.t1 MTR_1g442840 38.818 626 325 11 13 595 10 620 2.27e-151 450
MS.gene72842.t1 MTR_8g432620 40.429 559 296 10 49 590 62 600 2.52e-150 446
MS.gene72842.t1 MTR_1g069785 40.134 598 327 11 13 595 9 590 3.44e-148 441
MS.gene72842.t1 MTR_0019s0120 49.425 435 208 7 72 499 105 534 7.91e-148 437
MS.gene72842.t1 MTR_1g442840 43.056 504 266 6 103 595 14 507 2.87e-147 435
MS.gene72842.t1 MTR_3g068990 43.199 544 281 11 60 589 138 667 1.11e-146 439
MS.gene72842.t1 MTR_1g075900 40.727 550 291 9 66 595 85 619 1.95e-144 432
MS.gene72842.t1 MTR_5g021100 41.573 534 273 13 81 597 329 840 6.37e-142 432
MS.gene72842.t1 MTR_8g076650 43.074 527 266 11 81 593 387 893 1.14e-140 431
MS.gene72842.t1 MTR_3g096480 42.135 534 270 14 81 595 268 781 2.22e-138 422
MS.gene72842.t1 MTR_1g029730 41.954 522 276 12 81 589 151 658 3.97e-138 417
MS.gene72842.t1 MTR_5g083150 40.977 532 272 12 81 597 101 605 2.98e-137 413
MS.gene72842.t1 MTR_5g080720 42.656 497 261 10 38 525 93 574 4.80e-134 404
MS.gene72842.t1 MTR_7g076150 44.469 461 230 9 141 591 1 445 3.05e-133 397
MS.gene72842.t1 MTR_8g093880 39.785 558 296 14 53 593 275 809 4.50e-132 406
MS.gene72842.t1 MTR_3g088790 41.463 533 272 15 81 593 233 745 9.35e-132 403
MS.gene72842.t1 MTR_3g071530 41.300 523 269 12 81 592 153 648 1.27e-131 400
MS.gene72842.t1 MTR_1g051055 38.436 601 315 15 25 590 23 603 3.01e-126 384
MS.gene72842.t1 MTR_1g022255 36.832 524 290 13 80 592 208 701 1.08e-110 347
MS.gene72842.t1 MTR_5g064080 32.541 547 315 14 75 591 149 671 1.42e-96 310
MS.gene72842.t1 MTR_3g074780 31.597 576 343 15 51 591 130 689 5.17e-95 306
MS.gene72842.t1 MTR_4g083030 32.149 563 320 15 55 587 71 601 1.32e-90 292
MS.gene72842.t1 MTR_1g022255 32.481 391 227 11 80 460 208 571 1.39e-60 211
MS.gene72842.t1 MTR_5g033760 62.121 66 25 0 533 598 41 106 2.30e-22 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72842.t1 AT4G19120 74.167 600 151 3 1 598 1 598 0.0 956
MS.gene72842.t1 AT4G19120 74.167 600 151 3 1 598 1 598 0.0 956
MS.gene72842.t1 AT1G31850 73.422 602 152 4 4 597 2 603 0.0 953
MS.gene72842.t1 AT1G31850 73.422 602 152 4 4 597 2 603 0.0 953
MS.gene72842.t1 AT1G31850 73.422 602 152 4 4 597 2 603 0.0 953
MS.gene72842.t1 AT1G31850 73.422 602 152 4 4 597 2 603 0.0 953
MS.gene72842.t1 AT4G19120 74.451 501 124 3 1 499 1 499 0.0 799
MS.gene72842.t1 AT4G10440 46.816 534 269 8 72 594 93 622 1.31e-178 520
MS.gene72842.t1 AT1G33170 46.442 534 272 8 72 595 110 639 2.66e-176 514
MS.gene72842.t1 AT4G00750 42.623 610 312 12 14 590 18 622 1.73e-173 506
MS.gene72842.t1 AT2G45750 46.516 531 272 7 71 590 86 615 1.80e-171 501
MS.gene72842.t1 AT4G18030 43.301 612 315 11 10 596 5 609 5.69e-171 500
MS.gene72842.t1 AT1G26850 41.571 611 324 13 14 597 11 615 1.94e-165 485
MS.gene72842.t1 AT1G26850 41.571 611 324 13 14 597 11 615 1.94e-165 485
MS.gene72842.t1 AT2G43200 45.898 512 267 8 72 576 91 599 6.84e-163 479
MS.gene72842.t1 AT2G43200 45.898 512 267 8 72 576 91 599 6.84e-163 479
MS.gene72842.t1 AT4G00740 42.752 545 275 12 66 595 77 599 3.42e-157 464
MS.gene72842.t1 AT4G00740 42.752 545 275 12 66 595 77 599 3.42e-157 464
MS.gene72842.t1 AT2G39750 43.566 544 280 11 57 589 164 691 8.34e-149 446
MS.gene72842.t1 AT3G23300 41.774 541 291 8 69 595 76 606 4.19e-146 436
MS.gene72842.t1 AT3G23300 41.774 541 291 8 69 595 76 606 4.19e-146 436
MS.gene72842.t1 AT5G06050 41.758 546 289 11 56 589 135 663 4.82e-146 438
MS.gene72842.t1 AT1G04430 40.753 584 308 13 34 595 51 618 7.11e-145 433
MS.gene72842.t1 AT1G04430 40.753 584 308 13 34 595 51 618 7.11e-145 433
MS.gene72842.t1 AT1G04430 40.753 584 308 13 34 595 51 618 7.11e-145 433
MS.gene72842.t1 AT2G34300 43.609 532 264 12 81 595 250 762 1.51e-144 437
MS.gene72842.t1 AT2G34300 43.609 532 264 12 81 595 250 762 1.51e-144 437
MS.gene72842.t1 AT2G34300 43.609 532 264 12 81 595 250 762 1.51e-144 437
MS.gene72842.t1 AT4G14360 41.774 541 291 8 69 595 73 603 4.35e-142 425
MS.gene72842.t1 AT4G14360 41.774 541 291 8 69 595 73 603 4.35e-142 425
MS.gene72842.t1 AT1G77260 41.293 557 290 13 54 589 115 655 1.47e-140 423
MS.gene72842.t1 AT1G29470 42.669 532 269 13 81 595 250 762 6.66e-140 425
MS.gene72842.t1 AT1G29470 42.669 532 269 13 81 595 250 762 6.66e-140 425
MS.gene72842.t1 AT5G64030 43.100 529 268 11 81 593 308 819 6.98e-140 427
MS.gene72842.t1 AT2G40280 41.877 554 267 16 64 598 72 589 1.21e-137 413
MS.gene72842.t1 AT3G56080 43.238 525 257 14 81 592 114 610 1.92e-137 414
MS.gene72842.t1 AT5G14430 39.833 600 316 15 22 591 21 605 7.77e-137 412
MS.gene72842.t1 AT3G51070 41.308 535 273 12 81 595 381 894 1.19e-135 417
MS.gene72842.t1 AT5G14430 39.333 600 319 15 22 591 21 605 1.64e-134 406
MS.gene72842.t1 AT3G10200 37.124 598 334 13 16 590 10 588 9.14e-130 393
MS.gene72842.t1 AT1G26850 41.393 488 255 11 14 476 11 492 5.99e-128 385
MS.gene72842.t1 AT5G04060 36.529 605 335 12 16 590 12 597 1.47e-124 380
MS.gene72842.t1 AT3G56080 45.197 458 217 13 81 525 114 550 9.43e-124 376
MS.gene72842.t1 AT3G10200 36.007 586 326 13 16 571 10 576 5.96e-121 370
MS.gene72842.t1 AT3G51070 42.174 460 228 11 81 520 381 822 6.50e-118 370
MS.gene72842.t1 AT1G19430 36.243 527 290 15 80 592 230 724 2.93e-109 344
MS.gene72842.t1 AT1G19430 36.243 527 290 15 80 592 230 724 2.93e-109 344
MS.gene72842.t1 AT1G78240 31.086 608 354 17 22 587 92 676 8.05e-94 303
MS.gene72842.t1 AT1G78240 31.086 608 354 17 22 587 92 676 8.05e-94 303
MS.gene72842.t1 AT1G13860 31.588 554 313 11 72 591 81 602 5.10e-92 295
MS.gene72842.t1 AT1G13860 31.588 554 313 11 72 591 81 602 5.10e-92 295
MS.gene72842.t1 AT1G13860 31.588 554 313 11 72 591 81 602 5.10e-92 295
MS.gene72842.t1 AT1G13860 31.588 554 313 11 72 591 81 602 5.10e-92 295
MS.gene72842.t1 AT2G03480 32.092 564 316 14 52 587 66 590 1.91e-84 275
MS.gene72842.t1 AT2G03480 32.270 564 326 15 52 587 66 601 5.15e-84 275
MS.gene72842.t1 AT1G13860 31.828 465 265 9 156 589 1 444 1.95e-77 253
MS.gene72842.t1 AT1G19430 33.924 395 219 13 80 461 230 595 5.21e-64 221
MS.gene72842.t1 AT2G03480 30.882 340 217 7 52 382 66 396 1.44e-44 164

Find 154 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCGTCCCGGAGGATTT+TGG 0.137518 5.1:+17605816 MS.gene72842:CDS
ATGAATGTTGTTTCATCTTA+TGG 0.183938 5.1:+17606379 MS.gene72842:CDS
CTTATCCCATGGACAGAATT+TGG 0.187513 5.1:+17605539 MS.gene72842:CDS
TGAACAAGTGAAATCCTTTC+AGG 0.225038 5.1:-17606184 None:intergenic
TCGAGACTGTCGTCACATTT+TGG 0.252715 5.1:-17606046 None:intergenic
CCCTTCAAACTCCTTTGATA+TGG 0.267872 5.1:+17605499 MS.gene72842:CDS
ACTGACCCATCTTTGATTCC+TGG 0.271124 5.1:-17605040 None:intergenic
GGAGAGAAATTTCAATTTCC+TGG 0.292268 5.1:+17604956 MS.gene72842:CDS
GAGCTTCATGGTTATCTCTT+GGG 0.297706 5.1:-17605406 None:intergenic
GAAGAATTCGGTGAATTTCT+TGG 0.297915 5.1:-17605799 None:intergenic
CTTGGTGGAGTCTTTAAATC+TGG 0.314276 5.1:+17604348 MS.gene72842:CDS
TTCAACCTTTGAGGCCATTT+CGG 0.329744 5.1:-17606154 None:intergenic
TTGATAATCATTGCTGCATT+CGG 0.332172 5.1:-17604466 None:intergenic
CAAATTGAACCTGAGCTTCA+TGG 0.341870 5.1:-17605418 None:intergenic
CTTCAAATTATACAACAAAA+AGG 0.343104 5.1:+17605952 MS.gene72842:CDS
CAACATTCATCTCTACTCTT+TGG 0.346033 5.1:-17604746 None:intergenic
AAAACTACAGGGAGTGTATT+AGG 0.348105 5.1:-17606403 None:intergenic
ATCATAGCAAGCGTTGTCTT+TGG 0.357055 5.1:-17605999 None:intergenic
CCTTGATCAATGATCCTTTG+TGG 0.361183 5.1:+17606353 MS.gene72842:CDS
AAGAAGTTGTTGCCTGATCT+TGG 0.365039 5.1:+17606271 MS.gene72842:CDS
CTACTCTTTGGCCATCTGAT+TGG 0.368686 5.1:-17604734 None:intergenic
CTTGATCAATGATCCTTTGT+GGG 0.371015 5.1:+17606354 MS.gene72842:CDS
TGAGCTTCATGGTTATCTCT+TGG 0.371605 5.1:-17605407 None:intergenic
TGATAATCATTGCTGCATTC+GGG 0.379226 5.1:-17604465 None:intergenic
CTCTTTGGCCATCTGATTGG+AGG 0.385100 5.1:-17604731 None:intergenic
TTTATGTTAGGTTGCTAGCT+GGG 0.388813 5.1:+17605340 MS.gene72842:intron
TAATCAGCATTGGTTGATAA+AGG 0.396465 5.1:+17604931 MS.gene72842:CDS
CGCTTGTTTCGTTGTTCCAA+TGG 0.398244 5.1:+17606099 MS.gene72842:CDS
GGCCGCCTGGTCGCAAAATC+CGG 0.400319 5.1:-17607235 None:intergenic
ATGGATATGAATACAGCTTA+TGG 0.401394 5.1:+17606316 MS.gene72842:CDS
CTGACCCATCTTTGATTCCT+GGG 0.404275 5.1:-17605039 None:intergenic
TACCTATAGACTTACTTTGT+TGG 0.405719 5.1:+17604643 MS.gene72842:CDS
ATCTTGTTTGTGCCAAGATC+AGG 0.406150 5.1:-17606283 None:intergenic
ACATATTCACCAACACCATT+AGG 0.406899 5.1:-17604995 None:intergenic
TAGCTGGGGTGGTGACTTGT+TGG 0.407104 5.1:+17605355 MS.gene72842:CDS
ATCCTCCGGGACGAAGAATT+CGG 0.410892 5.1:-17605811 None:intergenic
CTGCATTCGGGAAAACTAAA+GGG 0.412194 5.1:-17604453 None:intergenic
TGCTTAGTTCCTCCTCCTCC+TGG 0.414185 5.1:+17604701 MS.gene72842:CDS
CGTGGTATCCCAGCAATTCT+TGG 0.416355 5.1:+17605449 MS.gene72842:CDS
GTCAGAGATCGGTTCTTGTT+CGG 0.419349 5.1:-17604282 None:intergenic
ATTTATGTTAGGTTGCTAGC+TGG 0.420475 5.1:+17605339 MS.gene72842:intron
TGCTTGTTAATCCAATCATA+TGG 0.422387 5.1:-17604902 None:intergenic
GAGATGACACCAAGAATTGC+TGG 0.425210 5.1:-17605458 None:intergenic
CAAATTCTGTCCATGGGATA+AGG 0.432198 5.1:-17605538 None:intergenic
GCCTCACGTACATGCCGAAA+TGG 0.432992 5.1:+17606140 MS.gene72842:CDS
GAAAGGATTTCACTTGTTCA+AGG 0.433009 5.1:+17606187 MS.gene72842:CDS
ATGGAAAAGTACAAGAAATC+AGG 0.433649 5.1:+17606118 MS.gene72842:CDS
GAAGTATGTAATGTTGGAAA+TGG 0.436291 5.1:+17607211 MS.gene72842:CDS
CGGATTATAGCGTGGCCGCC+TGG 0.438510 5.1:-17607248 None:intergenic
GGAGTGTACCATGCTGAATC+TGG 0.456691 5.1:-17606070 None:intergenic
GAGATCGGTTCTTGTTCGGC+TGG 0.470906 5.1:-17604278 None:intergenic
TGAAGGAGGTCATAGGTTCT+AGG 0.475544 5.1:-17606598 None:intergenic
ACAGGAATGTGCCATATGAT+TGG 0.476125 5.1:+17604891 MS.gene72842:intron
AGGCCTCGATCGAAAACTAC+AGG 0.476192 5.1:-17606415 None:intergenic
AGCTTCATGGTTATCTCTTG+GGG 0.476481 5.1:-17605405 None:intergenic
GGTGCAACATTCAACCTTTG+AGG 0.476749 5.1:-17606163 None:intergenic
GTCAGAACTGCAATTGATAC+TGG 0.477826 5.1:+17605061 MS.gene72842:CDS
GCTGCATTCGGGAAAACTAA+AGG 0.478763 5.1:-17604454 None:intergenic
AACAAGGATCATGAAGCATA+AGG 0.478806 5.1:+17604239 None:intergenic
TGAAATGAAGTATGTAATGT+TGG 0.482893 5.1:+17607205 MS.gene72842:CDS
ATCGGTTCTTGTTCGGCTGG+TGG 0.487576 5.1:-17604275 None:intergenic
CTCATAGTTGACTGGTGGAC+CGG 0.491832 5.1:-17605846 None:intergenic
CATCTTGATCCTGAGTTGGA+TGG 0.492062 5.1:-17607401 None:intergenic
GAATTACCAAATTCTGTCCA+TGG 0.492339 5.1:-17605545 None:intergenic
AAATTTCAATTTCCTGGTGG+AGG 0.497318 5.1:+17604962 MS.gene72842:CDS
CTGATCCCAGGAATCAAAGA+TGG 0.497573 5.1:+17605034 MS.gene72842:CDS
AAAAGGATGACATATATGTA+TGG 0.500938 5.1:+17605969 MS.gene72842:CDS
TTCCAACAAAGTAAGTCTAT+AGG 0.502688 5.1:-17604645 None:intergenic
TGACATATATGTATGGCAAA+AGG 0.507120 5.1:+17605976 MS.gene72842:CDS
AAAGAACCTGAGGATTGCTT+AGG 0.514314 5.1:-17604420 None:intergenic
GGCTTGTAACCAGGAGGAGG+AGG 0.516627 5.1:-17604710 None:intergenic
AAGAGATAACCATGAAGCTC+AGG 0.517215 5.1:+17605409 MS.gene72842:CDS
AGTTTCAAACATACCAGTCA+TGG 0.518005 5.1:-17606450 None:intergenic
GTAGAGATGAATGTTGGTAC+AGG 0.518059 5.1:+17604753 MS.gene72842:CDS
CTGATTGGAGGCTTGTAACC+AGG 0.519130 5.1:-17604719 None:intergenic
TTATCGGTACCTTCCATGAC+TGG 0.519417 5.1:+17606437 MS.gene72842:CDS
TCAGTCATGATAACAGTAAG+TGG 0.521028 5.1:+17606227 MS.gene72842:CDS
TTTGGAGGATAGGTGTCTCT+AGG 0.521324 5.1:-17606028 None:intergenic
GCCATATCAAAGGAGTTTGA+AGG 0.521561 5.1:-17605500 None:intergenic
GGACAAAACCCAAAATCCTC+CGG 0.525700 5.1:-17605825 None:intergenic
GGAGGTACTATGTTTCCTAA+TGG 0.527366 5.1:+17604980 MS.gene72842:CDS
TTGTCATCTTGATCCTGAGT+TGG 0.530646 5.1:-17607405 None:intergenic
CACCTACGCTCATAGTTGAC+TGG 0.531226 5.1:-17605854 None:intergenic
ATCAGCATGAAGGAGGTCAT+AGG 0.531348 5.1:-17606605 None:intergenic
TTATGTTAGGTTGCTAGCTG+GGG 0.531407 5.1:+17605341 MS.gene72842:intron
TATGACCTCCTTCATGCTGA+TGG 0.535477 5.1:+17606607 MS.gene72842:CDS
TCTTCACTGCTGAAAGCCAC+AGG 0.536372 5.1:+17606632 MS.gene72842:CDS
GGTTGAATGTTGCACCTGAA+AGG 0.539137 5.1:+17606170 MS.gene72842:CDS
GATTCACCTAAGCAATCCTC+AGG 0.541290 5.1:+17604414 MS.gene72842:CDS
CCACAAAGGATCATTGATCA+AGG 0.542881 5.1:-17606353 None:intergenic
TGCCATTGCAACTATTGCGA+AGG 0.544120 5.1:+17607292 MS.gene72842:CDS
ATGTAATGTTGGAAATGGAC+CGG 0.544880 5.1:+17607216 MS.gene72842:CDS
AAACAAGATAAGAAATGTGA+TGG 0.544976 5.1:+17606297 MS.gene72842:CDS
AGCAGAAGTCTAATCAGCAT+TGG 0.548041 5.1:+17604921 MS.gene72842:CDS
GCCCTTCGCAATAGTTGCAA+TGG 0.550946 5.1:-17607294 None:intergenic
TCAAAGGAGTTTGAAGGGAA+AGG 0.552291 5.1:-17605494 None:intergenic
GTCTTTAAATCTGGAAACAA+TGG 0.552619 5.1:+17604357 MS.gene72842:CDS
TTAATGCAAGATCTGATCCC+AGG 0.555758 5.1:+17605022 MS.gene72842:CDS
TGATCGCCGCAGTCAGAGAT+CGG 0.556133 5.1:-17604293 None:intergenic
CAGCATTGGTTGATAAAGGA+AGG 0.557499 5.1:+17604935 MS.gene72842:CDS
ACATGCCGAAATGGCCTCAA+AGG 0.560915 5.1:+17606149 MS.gene72842:CDS
AACTATGAGCGTAGGTGGCG+CGG 0.564106 5.1:+17605860 MS.gene72842:CDS
TGTTAGGTTGCTAGCTGGGG+TGG 0.567384 5.1:+17605344 MS.gene72842:intron
CCATATCAAAGGAGTTTGAA+GGG 0.568671 5.1:-17605499 None:intergenic
ATCACTATCATTGTTCTGTG+TGG 0.571055 5.1:+17604312 MS.gene72842:CDS
GAGAAATTTCAATTTCCTGG+TGG 0.571653 5.1:+17604959 MS.gene72842:CDS
CCGCAAAATAACTTGACTCT+CGG 0.573098 5.1:-17607268 None:intergenic
CTTAATTTGCAAAGAACCTG+AGG 0.573339 5.1:-17604430 None:intergenic
CTGTGGCAGCCATCCAACTC+AGG 0.575238 5.1:+17607392 MS.gene72842:CDS
ATGAGCGTAGGTGGCGCGGA+TGG 0.575531 5.1:+17605864 MS.gene72842:CDS
GACAAAACCCAAAATCCTCC+GGG 0.575836 5.1:-17605824 None:intergenic
AGGATCATGAAGCATAAGGA+TGG 0.579185 5.1:+17604243 None:intergenic
AATTACCAAATTCTGTCCAT+GGG 0.580974 5.1:-17605544 None:intergenic
AGTCATGGAAGGTACCGATA+AGG 0.582392 5.1:-17606435 None:intergenic
AATACCTTTGGATCTGTGCA+TGG 0.582765 5.1:-17604498 None:intergenic
CTGCAATTGATACTGGTTGT+GGG 0.583160 5.1:+17605068 MS.gene72842:CDS
TACTCCATGCACAGATCCAA+AGG 0.583464 5.1:+17604494 MS.gene72842:CDS
TCACAGAGATGGAGAAAGTA+CGG 0.584400 5.1:+17604620 MS.gene72842:intron
ATTCACCGAATTCTTCGTCC+CGG 0.585958 5.1:+17605806 MS.gene72842:CDS
GCTCTAGATGCCTTATCCCA+TGG 0.586277 5.1:+17605528 MS.gene72842:CDS
CAAAGAGTAGAGATGAATGT+TGG 0.586343 5.1:+17604747 MS.gene72842:CDS
GCCATTTCGGCATGTACGTG+AGG 0.586487 5.1:-17606141 None:intergenic
CAGTCAACTATGAGCGTAGG+TGG 0.587123 5.1:+17605855 MS.gene72842:CDS
CACCGAATTCTTCGTCCCGG+AGG 0.588572 5.1:+17605809 MS.gene72842:CDS
TGAAGAATCCATCAGCATGA+AGG 0.594586 5.1:-17606615 None:intergenic
ACTATGTTTCCTAATGGTGT+TGG 0.597032 5.1:+17604986 MS.gene72842:CDS
ACTGCAATTGATACTGGTTG+TGG 0.599923 5.1:+17605067 MS.gene72842:CDS
GTTCAATTTGCTCTCGAGCG+TGG 0.603549 5.1:+17605431 MS.gene72842:CDS
GGAGGCTTGTAACCAGGAGG+AGG 0.604710 5.1:-17604713 None:intergenic
AGATGACACCAAGAATTGCT+GGG 0.605182 5.1:-17605457 None:intergenic
GCCATTGCAACTATTGCGAA+GGG 0.608094 5.1:+17607293 MS.gene72842:CDS
CTATTGCGAAGGGCATGAGA+TGG 0.612026 5.1:+17607303 MS.gene72842:CDS
TGATCCCAGGAATCAAAGAT+GGG 0.614158 5.1:+17605035 MS.gene72842:CDS
GTTACAAGCCTCCAATCAGA+TGG 0.620710 5.1:+17604723 MS.gene72842:CDS
CTACGCTCATAGTTGACTGG+TGG 0.622282 5.1:-17605851 None:intergenic
TGAATCAAGTGATTTCTGAA+TGG 0.624350 5.1:-17604397 None:intergenic
GATATGAATACAGCTTATGG+AGG 0.639260 5.1:+17606319 MS.gene72842:CDS
GGTGGTGACTTGTTGGATCG+CGG 0.646853 5.1:+17605362 MS.gene72842:CDS
GTCTCGAACCAGATTCAGCA+TGG 0.653935 5.1:+17606062 MS.gene72842:CDS
AGAGCAATGAGCCATATCAA+AGG 0.654623 5.1:-17605510 None:intergenic
ACAACATTCATAACCCACAA+AGG 0.657750 5.1:-17606367 None:intergenic
AGAATCCATCAGCATGAAGG+AGG 0.658380 5.1:-17606612 None:intergenic
TCAAACATACCAGTCATGGA+AGG 0.663945 5.1:-17606446 None:intergenic
GGCCTCGATCGAAAACTACA+GGG 0.664815 5.1:-17606414 None:intergenic
TGCAATTGATACTGGTTGTG+GGG 0.666739 5.1:+17605069 MS.gene72842:CDS
ACAACGAAACAAGCGCGAAG+CGG 0.670028 5.1:-17606091 None:intergenic
CACCAGTCAACTATGAGCGT+AGG 0.677148 5.1:+17605852 MS.gene72842:CDS
TTGACTCTCGGATTATAGCG+TGG 0.690484 5.1:-17607256 None:intergenic
GCGCGGATGGAACACAACGG+TGG 0.695965 5.1:+17605877 MS.gene72842:CDS
GGAAACATAGTACCTCCACC+AGG 0.698372 5.1:-17604974 None:intergenic
ATTGGAGGCTTGTAACCAGG+AGG 0.710676 5.1:-17604716 None:intergenic
CAAGAACCGATCTCTGACTG+CGG 0.721103 5.1:+17604287 MS.gene72842:CDS
CAGATTTAAAGACTCCACCA+AGG 0.721559 5.1:-17604347 None:intergenic
GTGGCGCGGATGGAACACAA+CGG 0.793897 5.1:+17605874 MS.gene72842:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACTAAAAACAACTTAT+TGG - chr5.1:17606976-17606995 None:intergenic 15.0%
!! TTAGTATTAATTAATACCTT+TGG - chr5.1:17604513-17604532 None:intergenic 15.0%
!! AACAACTTATAACATATAGA+TGG - chr5.1:17606748-17606767 None:intergenic 20.0%
!! ACTATTCAAAAGTAAAATGA+AGG - chr5.1:17605105-17605124 None:intergenic 20.0%
!! CTTCAAATTATACAACAAAA+AGG + chr5.1:17605952-17605971 MS.gene72842:CDS 20.0%
!! TATAAGCACTTGTAATAATA+TGG + chr5.1:17606711-17606730 MS.gene72842:intron 20.0%
!! TCTACAAAAAATTTGATGTT+TGG + chr5.1:17604539-17604558 MS.gene72842:intron 20.0%
!! TTGTTATAAGATAAGTCTAA+GGG + chr5.1:17606860-17606879 MS.gene72842:intron 20.0%
!!! GAATAGTTATTTAGTTTCAA+TGG + chr5.1:17605118-17605137 MS.gene72842:intron 20.0%
!!! TATTCATATCTTATGCTTTT+AGG + chr5.1:17605764-17605783 MS.gene72842:intron 20.0%
!!! TGTTTTTGTGTTATATCATA+TGG + chr5.1:17606507-17606526 MS.gene72842:intron 20.0%
!!! TTTGTTATAAGATAAGTCTA+AGG + chr5.1:17606859-17606878 MS.gene72842:intron 20.0%
! AAAAGGATGACATATATGTA+TGG + chr5.1:17605969-17605988 MS.gene72842:CDS 25.0%
! AAACAAGATAAGAAATGTGA+TGG + chr5.1:17606297-17606316 MS.gene72842:CDS 25.0%
! AACTCTAAATATGAACCATA+AGG + chr5.1:17606469-17606488 MS.gene72842:intron 25.0%
! CATAGTGTAATTAATGCTTA+AGG - chr5.1:17605170-17605189 None:intergenic 25.0%
! TCACTTAACTCATTTATGTT+AGG + chr5.1:17605328-17605347 MS.gene72842:intron 25.0%
! TGAAATGAAGTATGTAATGT+TGG + chr5.1:17607205-17607224 MS.gene72842:CDS 25.0%
! TGTTATAAGATAAGTCTAAG+GGG + chr5.1:17606861-17606880 MS.gene72842:intron 25.0%
! TGTTGAAAAAGAGAAGATAT+TGG + chr5.1:17607355-17607374 MS.gene72842:CDS 25.0%
!! AATTTTCATCCATTAACTGA+TGG + chr5.1:17605738-17605757 MS.gene72842:intron 25.0%
!! ATTTTCATCCATTAACTGAT+GGG + chr5.1:17605739-17605758 MS.gene72842:intron 25.0%
!!! ATGAATGTTGTTTCATCTTA+TGG + chr5.1:17606379-17606398 MS.gene72842:CDS 25.0%
!!! GCATTTTGAAAATCTTGTTT+AGG - chr5.1:17607140-17607159 None:intergenic 25.0%
AATTACCAAATTCTGTCCAT+GGG - chr5.1:17605547-17605566 None:intergenic 30.0%
ACCATAAGGTTATGTGTTTA+TGG + chr5.1:17606483-17606502 MS.gene72842:intron 30.0%
ATGGATATGAATACAGCTTA+TGG + chr5.1:17606316-17606335 MS.gene72842:CDS 30.0%
CATTCTTTCCTCTCAAAAAT+CGG - chr5.1:17604683-17604702 None:intergenic 30.0%
GAAGTATGTAATGTTGGAAA+TGG + chr5.1:17607211-17607230 MS.gene72842:CDS 30.0%
GTCTTTAAATCTGGAAACAA+TGG + chr5.1:17604357-17604376 MS.gene72842:CDS 30.0%
GTGTTACATGAATAAATGAC+AGG + chr5.1:17604873-17604892 MS.gene72842:intron 30.0%
TAATTAATGCTTAAGGAGTG+TGG - chr5.1:17605163-17605182 None:intergenic 30.0%
TACCTATAGACTTACTTTGT+TGG + chr5.1:17604643-17604662 MS.gene72842:CDS 30.0%
TATGCTATAAACGCTTAGTT+AGG + chr5.1:17607095-17607114 MS.gene72842:intron 30.0%
TCAATTGTAACTAGATGTGT+CGG - chr5.1:17605226-17605245 None:intergenic 30.0%
TCCATAAACACATAACCTTA+TGG - chr5.1:17606487-17606506 None:intergenic 30.0%
TGAATATTCCCATCAGTTAA+TGG - chr5.1:17605750-17605769 None:intergenic 30.0%
TGAATCAAGTGATTTCTGAA+TGG - chr5.1:17604400-17604419 None:intergenic 30.0%
TGACATATATGTATGGCAAA+AGG + chr5.1:17605976-17605995 MS.gene72842:CDS 30.0%
TGGTACAGGTATGTAATATA+TGG + chr5.1:17604767-17604786 MS.gene72842:intron 30.0%
TTCCAACAAAGTAAGTCTAT+AGG - chr5.1:17604648-17604667 None:intergenic 30.0%
! ATGGAAAAGTACAAGAAATC+AGG + chr5.1:17606118-17606137 MS.gene72842:CDS 30.0%
! GATTTCTTGTACTTTTCCAT+TGG - chr5.1:17606118-17606137 None:intergenic 30.0%
! TCATATCTTATGCTTTTAGG+TGG + chr5.1:17605767-17605786 MS.gene72842:intron 30.0%
! TGCTTGTTAATCCAATCATA+TGG - chr5.1:17604905-17604924 None:intergenic 30.0%
! TTGATAATCATTGCTGCATT+CGG - chr5.1:17604469-17604488 None:intergenic 30.0%
!! TAATCAGCATTGGTTGATAA+AGG + chr5.1:17604931-17604950 MS.gene72842:CDS 30.0%
AAATTTCAATTTCCTGGTGG+AGG + chr5.1:17604962-17604981 MS.gene72842:CDS 35.0%
AATGGATGATTTCACAGAGA+TGG + chr5.1:17604609-17604628 MS.gene72842:intron 35.0%
ACAACATTCATAACCCACAA+AGG - chr5.1:17606370-17606389 None:intergenic 35.0%
ACATATTCACCAACACCATT+AGG - chr5.1:17604998-17605017 None:intergenic 35.0%
ACTATGTTTCCTAATGGTGT+TGG + chr5.1:17604986-17605005 MS.gene72842:CDS 35.0%
AGTTTCAAACATACCAGTCA+TGG - chr5.1:17606453-17606472 None:intergenic 35.0%
ATCACTATCATTGTTCTGTG+TGG + chr5.1:17604312-17604331 MS.gene72842:CDS 35.0%
ATGTAATGTTGGAAATGGAC+CGG + chr5.1:17607216-17607235 MS.gene72842:CDS 35.0%
CAAAGAGTAGAGATGAATGT+TGG + chr5.1:17604747-17604766 MS.gene72842:CDS 35.0%
CAACATTCATCTCTACTCTT+TGG - chr5.1:17604749-17604768 None:intergenic 35.0%
CCATATCAAAGGAGTTTGAA+GGG - chr5.1:17605502-17605521 None:intergenic 35.0%
CTTGATCAATGATCCTTTGT+GGG + chr5.1:17606354-17606373 MS.gene72842:CDS 35.0%
GAAAGGATTTCACTTGTTCA+AGG + chr5.1:17606187-17606206 MS.gene72842:CDS 35.0%
GAATTACCAAATTCTGTCCA+TGG - chr5.1:17605548-17605567 None:intergenic 35.0%
GAGAAATTTCAATTTCCTGG+TGG + chr5.1:17604959-17604978 MS.gene72842:CDS 35.0%
GATATGAATACAGCTTATGG+AGG + chr5.1:17606319-17606338 MS.gene72842:CDS 35.0%
GGAGAGAAATTTCAATTTCC+TGG + chr5.1:17604956-17604975 MS.gene72842:CDS 35.0%
TAGGCTGTTTATCCAAACTT+TGG + chr5.1:17607114-17607133 MS.gene72842:intron 35.0%
TCAGTCATGATAACAGTAAG+TGG + chr5.1:17606227-17606246 MS.gene72842:CDS 35.0%
TGAACAAGTGAAATCCTTTC+AGG - chr5.1:17606187-17606206 None:intergenic 35.0%
TGATAATCATTGCTGCATTC+GGG - chr5.1:17604468-17604487 None:intergenic 35.0%
! AAAACTACAGGGAGTGTATT+AGG - chr5.1:17606406-17606425 None:intergenic 35.0%
! ATCTTGTTTAGGCCAAAGTT+TGG - chr5.1:17607129-17607148 None:intergenic 35.0%
! ATTTATGTTAGGTTGCTAGC+TGG + chr5.1:17605339-17605358 MS.gene72842:intron 35.0%
! GAAGAATTCGGTGAATTTCT+TGG - chr5.1:17605802-17605821 None:intergenic 35.0%
! TCATGATGTCTTGTGCTATT+AGG + chr5.1:17606554-17606573 MS.gene72842:intron 35.0%
! TGTGGTTTTTCATTCTACCT+TGG + chr5.1:17604330-17604349 MS.gene72842:CDS 35.0%
! TTTATGTTAGGTTGCTAGCT+GGG + chr5.1:17605340-17605359 MS.gene72842:intron 35.0%
!! CTTAATTTGCAAAGAACCTG+AGG - chr5.1:17604433-17604452 None:intergenic 35.0%
!!! TGTTGATCGAGTTTTGAGAA+TGG + chr5.1:17604591-17604610 MS.gene72842:intron 35.0%
!!! TGTTTTCTGAAACTATCACG+AGG + chr5.1:17606764-17606783 MS.gene72842:intron 35.0%
AAAGAACCTGAGGATTGCTT+AGG - chr5.1:17604423-17604442 None:intergenic 40.0%
AAGAAGTTGTTGCCTGATCT+TGG + chr5.1:17606271-17606290 MS.gene72842:CDS 40.0%
AAGAGATAACCATGAAGCTC+AGG + chr5.1:17605409-17605428 MS.gene72842:CDS 40.0%
AATACCTTTGGATCTGTGCA+TGG - chr5.1:17604501-17604520 None:intergenic 40.0%
ACAGGAATGTGCCATATGAT+TGG + chr5.1:17604891-17604910 MS.gene72842:intron 40.0%
AGAGCAATGAGCCATATCAA+AGG - chr5.1:17605513-17605532 None:intergenic 40.0%
AGATGACACCAAGAATTGCT+GGG - chr5.1:17605460-17605479 None:intergenic 40.0%
AGCAGAAGTCTAATCAGCAT+TGG + chr5.1:17604921-17604940 MS.gene72842:CDS 40.0%
AGCTTCATGGTTATCTCTTG+GGG - chr5.1:17605408-17605427 None:intergenic 40.0%
ATTGAGTGCATATTCACCTG+TGG - chr5.1:17606651-17606670 None:intergenic 40.0%
CAAATTCTGTCCATGGGATA+AGG - chr5.1:17605541-17605560 None:intergenic 40.0%
CAAATTGAACCTGAGCTTCA+TGG - chr5.1:17605421-17605440 None:intergenic 40.0%
CAGATTTAAAGACTCCACCA+AGG - chr5.1:17604350-17604369 None:intergenic 40.0%
CCACAAAGGATCATTGATCA+AGG - chr5.1:17606356-17606375 None:intergenic 40.0%
CCCTTCAAACTCCTTTGATA+TGG + chr5.1:17605499-17605518 MS.gene72842:CDS 40.0%
CCGCAAAATAACTTGACTCT+CGG - chr5.1:17607271-17607290 None:intergenic 40.0%
CCTTGATCAATGATCCTTTG+TGG + chr5.1:17606353-17606372 MS.gene72842:CDS 40.0%
CTGCATTCGGGAAAACTAAA+GGG - chr5.1:17604456-17604475 None:intergenic 40.0%
CTTATCCCATGGACAGAATT+TGG + chr5.1:17605539-17605558 MS.gene72842:CDS 40.0%
CTTGGTGGAGTCTTTAAATC+TGG + chr5.1:17604348-17604367 MS.gene72842:CDS 40.0%
CTTTCCTCTCAAAAATCGGA+GGG - chr5.1:17604679-17604698 None:intergenic 40.0%
GAGCTTCATGGTTATCTCTT+GGG - chr5.1:17605409-17605428 None:intergenic 40.0%
GCCATATCAAAGGAGTTTGA+AGG - chr5.1:17605503-17605522 None:intergenic 40.0%
GCTTGTTTGAGCTTATCTAC+TGG + chr5.1:17606896-17606915 MS.gene72842:intron 40.0%
GTAGAGATGAATGTTGGTAC+AGG + chr5.1:17604753-17604772 MS.gene72842:CDS 40.0%
GTCAGAACTGCAATTGATAC+TGG + chr5.1:17605061-17605080 MS.gene72842:CDS 40.0%
GTTAGTGTCAGTGTTGTGTA+TGG + chr5.1:17605286-17605305 MS.gene72842:intron 40.0%
TCAAACATACCAGTCATGGA+AGG - chr5.1:17606449-17606468 None:intergenic 40.0%
TCAAAGGAGTTTGAAGGGAA+AGG - chr5.1:17605497-17605516 None:intergenic 40.0%
TCACAGAGATGGAGAAAGTA+CGG + chr5.1:17604620-17604639 MS.gene72842:intron 40.0%
TCTTTCCTCTCAAAAATCGG+AGG - chr5.1:17604680-17604699 None:intergenic 40.0%
TGAAGAATCCATCAGCATGA+AGG - chr5.1:17606618-17606637 None:intergenic 40.0%
TGAGCTTCATGGTTATCTCT+TGG - chr5.1:17605410-17605429 None:intergenic 40.0%
TGATCCCAGGAATCAAAGAT+GGG + chr5.1:17605035-17605054 MS.gene72842:CDS 40.0%
TTAATGCAAGATCTGATCCC+AGG + chr5.1:17605022-17605041 MS.gene72842:CDS 40.0%
! ACTGCAATTGATACTGGTTG+TGG + chr5.1:17605067-17605086 MS.gene72842:CDS 40.0%
! ATCATAGCAAGCGTTGTCTT+TGG - chr5.1:17606002-17606021 None:intergenic 40.0%
! ATCTTGTTTGTGCCAAGATC+AGG - chr5.1:17606286-17606305 None:intergenic 40.0%
! CTGCAATTGATACTGGTTGT+GGG + chr5.1:17605068-17605087 MS.gene72842:CDS 40.0%
! GGTTTTTCATTCTACCTTGG+TGG + chr5.1:17604333-17604352 MS.gene72842:CDS 40.0%
! TGCAATTGATACTGGTTGTG+GGG + chr5.1:17605069-17605088 MS.gene72842:CDS 40.0%
! TTATGTTAGGTTGCTAGCTG+GGG + chr5.1:17605341-17605360 MS.gene72842:intron 40.0%
!! CAGCATTGGTTGATAAAGGA+AGG + chr5.1:17604935-17604954 MS.gene72842:CDS 40.0%
!! CCGAGAGTCAAGTTATTTTG+CGG + chr5.1:17607268-17607287 MS.gene72842:CDS 40.0%
!! GGAGGTACTATGTTTCCTAA+TGG + chr5.1:17604980-17604999 MS.gene72842:CDS 40.0%
!! TTCAACCTTTGAGGCCATTT+CGG - chr5.1:17606157-17606176 None:intergenic 40.0%
!!! TGACTGTTTGAGAGTGCTTT+TGG + chr5.1:17606933-17606952 MS.gene72842:intron 40.0%
ACTGACCCATCTTTGATTCC+TGG - chr5.1:17605043-17605062 None:intergenic 45.0%
AGAATCCATCAGCATGAAGG+AGG - chr5.1:17606615-17606634 None:intergenic 45.0%
AGCAGTGATACTTGCGTGTT+TGG + chr5.1:17605191-17605210 MS.gene72842:intron 45.0%
ATCAGCATGAAGGAGGTCAT+AGG - chr5.1:17606608-17606627 None:intergenic 45.0%
ATTCACCGAATTCTTCGTCC+CGG + chr5.1:17605806-17605825 MS.gene72842:CDS 45.0%
CGCTTGTTTCGTTGTTCCAA+TGG + chr5.1:17606099-17606118 MS.gene72842:CDS 45.0%
CTACTCTTTGGCCATCTGAT+TGG - chr5.1:17604737-17604756 None:intergenic 45.0%
CTGACCCATCTTTGATTCCT+GGG - chr5.1:17605042-17605061 None:intergenic 45.0%
CTGATCCCAGGAATCAAAGA+TGG + chr5.1:17605034-17605053 MS.gene72842:CDS 45.0%
GACAAAACCCAAAATCCTCC+GGG - chr5.1:17605827-17605846 None:intergenic 45.0%
GAGATGACACCAAGAATTGC+TGG - chr5.1:17605461-17605480 None:intergenic 45.0%
GATAAGTCTAAGGGGCTGTT+TGG + chr5.1:17606869-17606888 MS.gene72842:intron 45.0%
GATTCACCTAAGCAATCCTC+AGG + chr5.1:17604414-17604433 MS.gene72842:CDS 45.0%
GCCATTGCAACTATTGCGAA+GGG + chr5.1:17607293-17607312 MS.gene72842:CDS 45.0%
GCTGCATTCGGGAAAACTAA+AGG - chr5.1:17604457-17604476 None:intergenic 45.0%
GGACAAAACCCAAAATCCTC+CGG - chr5.1:17605828-17605847 None:intergenic 45.0%
GGTGCAACATTCAACCTTTG+AGG - chr5.1:17606166-17606185 None:intergenic 45.0%
GGTTGAATGTTGCACCTGAA+AGG + chr5.1:17606170-17606189 MS.gene72842:CDS 45.0%
GTTACAAGCCTCCAATCAGA+TGG + chr5.1:17604723-17604742 MS.gene72842:CDS 45.0%
TACTCCATGCACAGATCCAA+AGG + chr5.1:17604494-17604513 MS.gene72842:CDS 45.0%
TATGACCTCCTTCATGCTGA+TGG + chr5.1:17606607-17606626 MS.gene72842:CDS 45.0%
TCTCAAAAATCGGAGGGCAA+TGG - chr5.1:17604673-17604692 None:intergenic 45.0%
TGAAGGAGGTCATAGGTTCT+AGG - chr5.1:17606601-17606620 None:intergenic 45.0%
TGCCATTGCAACTATTGCGA+AGG + chr5.1:17607292-17607311 MS.gene72842:CDS 45.0%
TGGTATGCCAGAAAAAGCTG+TGG + chr5.1:17607375-17607394 MS.gene72842:CDS 45.0%
TTATCGGTACCTTCCATGAC+TGG + chr5.1:17606437-17606456 MS.gene72842:CDS 45.0%
TTGACTCTCGGATTATAGCG+TGG - chr5.1:17607259-17607278 None:intergenic 45.0%
TTGTGAGATCGCTCTAACAG+TGG + chr5.1:17607165-17607184 MS.gene72842:intron 45.0%
TTTGGAGGATAGGTGTCTCT+AGG - chr5.1:17606031-17606050 None:intergenic 45.0%
! AGACTGTCGTCACATTTTGG+AGG - chr5.1:17606046-17606065 None:intergenic 45.0%
! CATCTTGATCCTGAGTTGGA+TGG - chr5.1:17607404-17607423 None:intergenic 45.0%
! GTCAGAGATCGGTTCTTGTT+CGG - chr5.1:17604285-17604304 None:intergenic 45.0%
! TCGAGACTGTCGTCACATTT+TGG - chr5.1:17606049-17606068 None:intergenic 45.0%
!! AGTCATGGAAGGTACCGATA+AGG - chr5.1:17606438-17606457 None:intergenic 45.0%
!! ATTGCCCTCCGATTTTTGAG+AGG + chr5.1:17604672-17604691 MS.gene72842:CDS 45.0%
!! GTCGTCACATTTTGGAGGAT+AGG - chr5.1:17606041-17606060 None:intergenic 45.0%
!! GTTTTCGATCGAGGCCTTAT+CGG + chr5.1:17606421-17606440 MS.gene72842:CDS 45.0%
!!! GGAGGATTTTGGGTTTTGTC+CGG + chr5.1:17605827-17605846 MS.gene72842:CDS 45.0%
!!! ATTGTTTTTTAAATAATTAT+TGG + chr5.1:17605254-17605273 MS.gene72842:intron 5.0%
!!! TTTATTTTATCTTTTATAAT+AGG + chr5.1:17607037-17607056 MS.gene72842:intron 5.0%
ACAACGAAACAAGCGCGAAG+CGG - chr5.1:17606094-17606113 None:intergenic 50.0%
ACATGCCGAAATGGCCTCAA+AGG + chr5.1:17606149-17606168 MS.gene72842:CDS 50.0%
AGGCCTCGATCGAAAACTAC+AGG - chr5.1:17606418-17606437 None:intergenic 50.0%
ATCCTCCGGGACGAAGAATT+CGG - chr5.1:17605814-17605833 None:intergenic 50.0%
ATTGGAGGCTTGTAACCAGG+AGG - chr5.1:17604719-17604738 None:intergenic 50.0%
CAAGAACCGATCTCTGACTG+CGG + chr5.1:17604287-17604306 MS.gene72842:CDS 50.0%
CACCAGTCAACTATGAGCGT+AGG + chr5.1:17605852-17605871 MS.gene72842:CDS 50.0%
CACCTACGCTCATAGTTGAC+TGG - chr5.1:17605857-17605876 None:intergenic 50.0%
CAGTCAACTATGAGCGTAGG+TGG + chr5.1:17605855-17605874 MS.gene72842:CDS 50.0%
CGTGGTATCCCAGCAATTCT+TGG + chr5.1:17605449-17605468 MS.gene72842:CDS 50.0%
CTACGCTCATAGTTGACTGG+TGG - chr5.1:17605854-17605873 None:intergenic 50.0%
CTCTTTGGCCATCTGATTGG+AGG - chr5.1:17604734-17604753 None:intergenic 50.0%
CTGATTGGAGGCTTGTAACC+AGG - chr5.1:17604722-17604741 None:intergenic 50.0%
GCCCTTCGCAATAGTTGCAA+TGG - chr5.1:17607297-17607316 None:intergenic 50.0%
GGAAACATAGTACCTCCACC+AGG - chr5.1:17604977-17604996 None:intergenic 50.0%
GGAGTGTACCATGCTGAATC+TGG - chr5.1:17606073-17606092 None:intergenic 50.0%
GGCCTCGATCGAAAACTACA+GGG - chr5.1:17606417-17606436 None:intergenic 50.0%
GTCTCGAACCAGATTCAGCA+TGG + chr5.1:17606062-17606081 MS.gene72842:CDS 50.0%
TCTTCACTGCTGAAAGCCAC+AGG + chr5.1:17606632-17606651 MS.gene72842:CDS 50.0%
! CTATTGCGAAGGGCATGAGA+TGG + chr5.1:17607303-17607322 MS.gene72842:CDS 50.0%
! CTCATAGTTGACTGGTGGAC+CGG - chr5.1:17605849-17605868 None:intergenic 50.0%
! CTCCCTGTAGTTTTCGATCG+AGG + chr5.1:17606412-17606431 MS.gene72842:CDS 50.0%
! GCTCTAGATGCCTTATCCCA+TGG + chr5.1:17605528-17605547 MS.gene72842:CDS 50.0%
! GTTCAATTTGCTCTCGAGCG+TGG + chr5.1:17605431-17605450 MS.gene72842:CDS 50.0%
! TCTTCGTCCCGGAGGATTTT+GGG + chr5.1:17605817-17605836 MS.gene72842:CDS 50.0%
! TTCTTCGTCCCGGAGGATTT+TGG + chr5.1:17605816-17605835 MS.gene72842:CDS 50.0%
!! ATGGCTGCCACAGCTTTTTC+TGG - chr5.1:17607385-17607404 None:intergenic 50.0%
AACTATGAGCGTAGGTGGCG+CGG + chr5.1:17605860-17605879 MS.gene72842:CDS 55.0%
GCCATTTCGGCATGTACGTG+AGG - chr5.1:17606144-17606163 None:intergenic 55.0%
GCCTCACGTACATGCCGAAA+TGG + chr5.1:17606140-17606159 MS.gene72842:CDS 55.0%
TGATCGCCGCAGTCAGAGAT+CGG - chr5.1:17604296-17604315 None:intergenic 55.0%
TGCTTAGTTCCTCCTCCTCC+TGG + chr5.1:17604701-17604720 MS.gene72842:CDS 55.0%
! ATCGGTTCTTGTTCGGCTGG+TGG - chr5.1:17604278-17604297 None:intergenic 55.0%
! ATGGACCGGATTTTGCGACC+AGG + chr5.1:17607230-17607249 MS.gene72842:CDS 55.0%
! GAGATCGGTTCTTGTTCGGC+TGG - chr5.1:17604281-17604300 None:intergenic 55.0%
! TAGCTGGGGTGGTGACTTGT+TGG + chr5.1:17605355-17605374 MS.gene72842:CDS 55.0%
! TGTTAGGTTGCTAGCTGGGG+TGG + chr5.1:17605344-17605363 MS.gene72842:intron 55.0%
!! GGTGGTGACTTGTTGGATCG+CGG + chr5.1:17605362-17605381 MS.gene72842:CDS 55.0%
CACCGAATTCTTCGTCCCGG+AGG + chr5.1:17605809-17605828 MS.gene72842:CDS 60.0%
CTGTGGCAGCCATCCAACTC+AGG + chr5.1:17607392-17607411 MS.gene72842:CDS 60.0%
GGAGGCTTGTAACCAGGAGG+AGG - chr5.1:17604716-17604735 None:intergenic 60.0%
GGCTTGTAACCAGGAGGAGG+AGG - chr5.1:17604713-17604732 None:intergenic 60.0%
GTGGCGCGGATGGAACACAA+CGG + chr5.1:17605874-17605893 MS.gene72842:CDS 60.0%
! GACCGGATTTTGCGACCAGG+CGG + chr5.1:17607233-17607252 MS.gene72842:CDS 60.0%
ATGAGCGTAGGTGGCGCGGA+TGG + chr5.1:17605864-17605883 MS.gene72842:CDS 65.0%
CGGATTATAGCGTGGCCGCC+TGG - chr5.1:17607251-17607270 None:intergenic 65.0%
GCGCGGATGGAACACAACGG+TGG + chr5.1:17605877-17605896 MS.gene72842:CDS 65.0%
GGCCGCCTGGTCGCAAAATC+CGG - chr5.1:17607238-17607257 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 17604249 17607424 17604249 ID=MS.gene72842
chr5.1 mRNA 17604249 17607424 17604249 ID=MS.gene72842.t1;Parent=MS.gene72842
chr5.1 exon 17604249 17604515 17604249 ID=MS.gene72842.t1.exon1;Parent=MS.gene72842.t1
chr5.1 CDS 17604249 17604515 17604249 ID=cds.MS.gene72842.t1;Parent=MS.gene72842.t1
chr5.1 exon 17604626 17604774 17604626 ID=MS.gene72842.t1.exon2;Parent=MS.gene72842.t1
chr5.1 CDS 17604626 17604774 17604626 ID=cds.MS.gene72842.t1;Parent=MS.gene72842.t1
chr5.1 exon 17604895 17605090 17604895 ID=MS.gene72842.t1.exon3;Parent=MS.gene72842.t1
chr5.1 CDS 17604895 17605090 17604895 ID=cds.MS.gene72842.t1;Parent=MS.gene72842.t1
chr5.1 exon 17605350 17605560 17605350 ID=MS.gene72842.t1.exon4;Parent=MS.gene72842.t1
chr5.1 CDS 17605350 17605560 17605350 ID=cds.MS.gene72842.t1;Parent=MS.gene72842.t1
chr5.1 exon 17605786 17606458 17605786 ID=MS.gene72842.t1.exon5;Parent=MS.gene72842.t1
chr5.1 CDS 17605786 17606458 17605786 ID=cds.MS.gene72842.t1;Parent=MS.gene72842.t1
chr5.1 exon 17606576 17606653 17606576 ID=MS.gene72842.t1.exon6;Parent=MS.gene72842.t1
chr5.1 CDS 17606576 17606653 17606576 ID=cds.MS.gene72842.t1;Parent=MS.gene72842.t1
chr5.1 exon 17607202 17607424 17607202 ID=MS.gene72842.t1.exon7;Parent=MS.gene72842.t1
chr5.1 CDS 17607202 17607424 17607202 ID=cds.MS.gene72842.t1;Parent=MS.gene72842.t1
Gene Sequence

>MS.gene72842

ATGAAGCATAAGGATGGAAAACTGATCCACCAGCCGAACAAGAACCGATCTCTGACTGCGGCGATCACTATCATTGTTCTGTGTGGTTTTTCATTCTACCTTGGTGGAGTCTTTAAATCTGGAAACAATGGTGTTGATGTCATCAACACCATTCAGAAATCACTTGATTCACCTAAGCAATCCTCAGGTTCTTTGCAAATTAAGCCCTTTAGTTTTCCCGAATGCAGCAATGATTATCAAGACTATACTCCATGCACAGATCCAAAGGTATTAATTAATACTAATAGTTTTCTACAAAAAATTTGATGTTTGGATTTTTTGTAGAAGAAAATTTCATTATTTTGTTGATCGAGTTTTGAGAATGGATGATTTCACAGAGATGGAGAAAGTACGGTACCTATAGACTTACTTTGTTGGAACGCCATTGCCCTCCGATTTTTGAGAGGAAAGAATGCTTAGTTCCTCCTCCTCCTGGTTACAAGCCTCCAATCAGATGGCCAAAGAGTAGAGATGAATGTTGGTACAGGTATGTAATATATGGTTTATAAGTTGAAATAATTATTGTTTGAATTGATTTTAAGTTGATTGCTACATCGTATATTGTTGTTCAAGTTTTTAATCATTGTGTTACATGAATAAATGACAGGAATGTGCCATATGATTGGATTAACAAGCAGAAGTCTAATCAGCATTGGTTGATAAAGGAAGGAGAGAAATTTCAATTTCCTGGTGGAGGTACTATGTTTCCTAATGGTGTTGGTGAATATGTTGATTTAATGCAAGATCTGATCCCAGGAATCAAAGATGGGTCAGTCAGAACTGCAATTGATACTGGTTGTGGGGTGAGTTTTATCCTTCATTTTACTTTTGAATAGTTATTTAGTTTCAATGGCAATGCAAATTAAAATTCTCCACACTCCTTAAGCATTAATTACACTATGTAGCAGTGATACTTGCGTGTTTGGTGTCTAACACCGACACATCTAGTTACAATTGATCACTTTCATTGTTTTTTAAATAATTATTGGTCTCTATGTGTTAGTGTCAGTGTTGTGTATGGTGTATCTGTCAATTAATATTCACTTAACTCATTTATGTTAGGTTGCTAGCTGGGGTGGTGACTTGTTGGATCGCGGCGTTCTAACAATTTCTCTTGCCCCAAGAGATAACCATGAAGCTCAGGTTCAATTTGCTCTCGAGCGTGGTATCCCAGCAATTCTTGGTGTCATCTCTACACAAAGACTTCCTTTCCCTTCAAACTCCTTTGATATGGCTCATTGCTCTAGATGCCTTATCCCATGGACAGAATTTGGTAATTCTTGAATGAATTTTAAAATTTTCAGCTCTTAAAACAGATTTTTTTTTTTTTGCTTTCTGTTTATGCAATGTTTTCATGAACTTTATCAACATAATAAAACATTTTCATTCATCTAAGTTAGTAGTAATTTTCATAAACTGTCTTGTTTAGAGCTGATATAAGTTCAGTCGAAATTTTCATCCATTAACTGATGGGAATATTCATATCTTATGCTTTTAGGTGGAATTTATCTCCAAGAAATTCACCGAATTCTTCGTCCCGGAGGATTTTGGGTTTTGTCCGGTCCACCAGTCAACTATGAGCGTAGGTGGCGCGGATGGAACACAACGGTGGAAGAGCAAAGATCAGATTATGAAAAGCTACAAGATTTGCTCACATCAATGTGCTTCAAATTATACAACAAAAAGGATGACATATATGTATGGCAAAAGGCCAAAGACAACGCTTGCTATGATAAGCTTCCTAGAGACACCTATCCTCCAAAATGTGACGACAGTCTCGAACCAGATTCAGCATGGTACACTCCGCTTCGCGCTTGTTTCGTTGTTCCAATGGAAAAGTACAAGAAATCAGGCCTCACGTACATGCCGAAATGGCCTCAAAGGTTGAATGTTGCACCTGAAAGGATTTCACTTGTTCAAGGTTCTAGTTCTAGTACTTTCAGTCATGATAACAGTAAGTGGAAAAAGCGCATTCAGCACTACAAGAAGTTGTTGCCTGATCTTGGCACAAACAAGATAAGAAATGTGATGGATATGAATACAGCTTATGGAGGTTTTGCTGCTTCCTTGATCAATGATCCTTTGTGGGTTATGAATGTTGTTTCATCTTATGGTCCTAATACACTCCCTGTAGTTTTCGATCGAGGCCTTATCGGTACCTTCCATGACTGGTATGTTTGAAACTCTAAATATGAACCATAAGGTTATGTGTTTATGGATGTTTTTGTGTTATATCATATGGTTTTCATTAGTAATGATTTGAATTTCATGATGTCTTGTGCTATTAGGTGTGAAGCTTTTTCAACATATCCTAGAACCTATGACCTCCTTCATGCTGATGGATTCTTCACTGCTGAAAGCCACAGGTGAATATGCACTCAATCAATACTTCAATTTTGACAGCTTAATTAATCACTTCTTAATATAAGCACTTGTAATAATATGGTCAAACTGTTTCCATCTATATGTTATAAGTTGTTTTCTGAAACTATCACGAGGAGCATACTGAAAACAGCTTTATCAAGTCACGAGTTATTTTTATAAGTTCTGTTGAACACTTTCACAGTTGCTTTTGTTATAAGATAAGTCTAAGGGGCTGTTTGGATTCGCTTGTTTGAGCTTATCTACTGGCATAAACAATTGCTTGACTGTTTGAGAGTGCTTTTGGAAACAACTTATGACATGCCAATAAGTTGTTTTTAGTTTATTTCTATAAGCTCTCTATTATAGCTTATGAAAACAAGTTGACTTTATTTTATCTTTTATAATAGGAAAGTTTATACATAAGCACTTATATGATAAAATCTTATGCTATAAACGCTTAGTTAGGCTGTTTATCCAAACTTTGGCCTAAACAAGATTTTCAAAATGCACTCATTGTGAGATCGCTCTAACAGTGGCTGTTACATTGCAGATGTGAAATGAAGTATGTAATGTTGGAAATGGACCGGATTTTGCGACCAGGCGGCCACGCTATAATCCGAGAGTCAAGTTATTTTGCGGATGCCATTGCAACTATTGCGAAGGGCATGAGATGGATATGTCATAAAGAAAACACTGAGTTTGATGTTGAAAAAGAGAAGATATTGGTATGCCAGAAAAAGCTGTGGCAGCCATCCAACTCAGGATCAAGATGA
Protein sequence

>MS.gene72842.t1

MKHKDGKLIHQPNKNRSLTAAITIIVLCGFSFYLGGVFKSGNNGVDVINTIQKSLDSPKQSSGSLQIKPFSFPECSNDYQDYTPCTDPKRWRKYGTYRLTLLERHCPPIFERKECLVPPPPGYKPPIRWPKSRDECWYRNVPYDWINKQKSNQHWLIKEGEKFQFPGGGTMFPNGVGEYVDLMQDLIPGIKDGSVRTAIDTGCGVASWGGDLLDRGVLTISLAPRDNHEAQVQFALERGIPAILGVISTQRLPFPSNSFDMAHCSRCLIPWTEFGGIYLQEIHRILRPGGFWVLSGPPVNYERRWRGWNTTVEEQRSDYEKLQDLLTSMCFKLYNKKDDIYVWQKAKDNACYDKLPRDTYPPKCDDSLEPDSAWYTPLRACFVVPMEKYKKSGLTYMPKWPQRLNVAPERISLVQGSSSSTFSHDNSKWKKRIQHYKKLLPDLGTNKIRNVMDMNTAYGGFAASLINDPLWVMNVVSSYGPNTLPVVFDRGLIGTFHDWCEAFSTYPRTYDLLHADGFFTAESHRCEMKYVMLEMDRILRPGGHAIIRESSYFADAIATIAKGMRWICHKENTEFDVEKEKILVCQKKLWQPSNSGSR