Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73510.t1 | XP_003605795.2 | 94.3 | 367 | 21 | 0 | 1 | 367 | 4 | 370 | 2.00E-204 | 721.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73510.t1 | G7JUL6 | 94.3 | 367 | 21 | 0 | 1 | 367 | 1 | 367 | 1.5e-204 | 721.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051996 | MS.gene73510 | 0.804907 | 1.72E-49 | -1.69E-46 |
| MS.gene052223 | MS.gene73510 | 0.82738 | 1.62E-54 | -1.69E-46 |
| MS.gene054277 | MS.gene73510 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene73510 | 0.826325 | 2.89E-54 | -1.69E-46 |
| MS.gene056330 | MS.gene73510 | 0.812536 | 4.04E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene73510 | 0.815113 | 1.09E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene73510 | 0.821651 | 3.60E-53 | -1.69E-46 |
| MS.gene059891 | MS.gene73510 | 0.800162 | 1.64E-48 | -1.69E-46 |
| MS.gene059892 | MS.gene73510 | 0.808741 | 2.67E-50 | -1.69E-46 |
| MS.gene060087 | MS.gene73510 | 0.813236 | 2.83E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51556 | MS.gene73510 | PPI |
| MS.gene015971 | MS.gene73510 | PPI |
| MS.gene60267 | MS.gene73510 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73510.t1 | MTR_4g039740 | 94.278 | 367 | 21 | 0 | 1 | 367 | 1 | 367 | 0.0 | 723 |
| MS.gene73510.t1 | MTR_4g039720 | 92.391 | 368 | 27 | 1 | 1 | 367 | 4 | 371 | 0.0 | 707 |
| MS.gene73510.t1 | MTR_4g039680 | 88.828 | 367 | 41 | 0 | 1 | 367 | 1 | 367 | 0.0 | 684 |
| MS.gene73510.t1 | MTR_0045s0110 | 79.292 | 367 | 76 | 0 | 1 | 367 | 1 | 367 | 0.0 | 610 |
| MS.gene73510.t1 | MTR_1g011800 | 54.545 | 330 | 148 | 2 | 34 | 361 | 39 | 368 | 2.52e-131 | 380 |
| MS.gene73510.t1 | MTR_2g103170 | 50.000 | 334 | 161 | 2 | 34 | 361 | 28 | 361 | 1.20e-115 | 341 |
| MS.gene73510.t1 | MTR_2g019600 | 41.994 | 331 | 191 | 1 | 34 | 363 | 35 | 365 | 4.36e-95 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73510.t1 | AT3G08030 | 68.235 | 340 | 107 | 1 | 29 | 367 | 26 | 365 | 3.88e-177 | 496 |
| MS.gene73510.t1 | AT3G08030 | 69.350 | 323 | 98 | 1 | 46 | 367 | 1 | 323 | 6.14e-171 | 479 |
| MS.gene73510.t1 | AT2G41810 | 59.066 | 364 | 145 | 3 | 3 | 363 | 4 | 366 | 3.85e-154 | 438 |
| MS.gene73510.t1 | AT2G41800 | 61.145 | 332 | 128 | 1 | 34 | 364 | 36 | 367 | 1.56e-152 | 434 |
| MS.gene73510.t1 | AT5G25460 | 53.039 | 362 | 160 | 3 | 6 | 361 | 4 | 361 | 2.49e-137 | 395 |
| MS.gene73510.t1 | AT5G11420 | 55.319 | 329 | 146 | 1 | 34 | 361 | 30 | 358 | 4.48e-136 | 392 |
| MS.gene73510.t1 | AT4G32460 | 54.103 | 329 | 150 | 1 | 34 | 361 | 29 | 357 | 9.37e-133 | 384 |
| MS.gene73510.t1 | AT4G32460 | 54.103 | 329 | 150 | 1 | 34 | 361 | 29 | 357 | 9.37e-133 | 384 |
| MS.gene73510.t1 | AT4G32460 | 54.574 | 317 | 143 | 1 | 46 | 361 | 1 | 317 | 2.87e-130 | 376 |
| MS.gene73510.t1 | AT4G32460 | 54.574 | 317 | 143 | 1 | 46 | 361 | 1 | 317 | 2.87e-130 | 376 |
| MS.gene73510.t1 | AT1G80240 | 51.368 | 329 | 159 | 1 | 34 | 361 | 32 | 360 | 2.95e-117 | 345 |
| MS.gene73510.t1 | AT2G34510 | 42.560 | 336 | 187 | 2 | 34 | 363 | 43 | 378 | 7.87e-96 | 291 |
| MS.gene73510.t1 | AT1G29980 | 41.176 | 340 | 190 | 2 | 34 | 363 | 7 | 346 | 1.88e-95 | 289 |
| MS.gene73510.t1 | AT1G29980 | 41.176 | 340 | 190 | 2 | 34 | 363 | 43 | 382 | 7.47e-95 | 289 |
| MS.gene73510.t1 | AT2G34510 | 43.836 | 292 | 158 | 2 | 78 | 363 | 1 | 292 | 5.02e-85 | 260 |
| MS.gene73510.t1 | AT5G14150 | 27.835 | 388 | 232 | 14 | 1 | 367 | 1 | 361 | 3.52e-33 | 127 |
| MS.gene73510.t1 | AT5G14150 | 27.835 | 388 | 232 | 14 | 1 | 367 | 1 | 361 | 3.52e-33 | 127 |
Find 106 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGTTGTAGACTTTATT+TGG | 0.124368 | 4.4:+64438949 | None:intergenic |
| CTTTGAATCAATGAATTTAA+TGG | 0.135571 | 4.4:+64439056 | None:intergenic |
| CATACAAAGATTGATGATTT+TGG | 0.136231 | 4.4:-64438745 | MS.gene73510:CDS |
| CCATTGGTTGAGTTGAAAAT+AGG | 0.216368 | 4.4:+64439150 | None:intergenic |
| GACACAAGATCTTGTTGTTT+TGG | 0.237874 | 4.4:+64439114 | None:intergenic |
| TTTAGATGCTGTTGCTATTA+GGG | 0.266257 | 4.4:-64439990 | MS.gene73510:CDS |
| CCCTTTCCAACAGATTTAAA+AGG | 0.279827 | 4.4:+64438844 | None:intergenic |
| GCATGAACTCCATGTGATAC+TGG | 0.289540 | 4.4:+64440283 | None:intergenic |
| CTTCTTGAACACCAGGGTTA+TGG | 0.308939 | 4.4:+64440032 | None:intergenic |
| CTGGTTTGACCTTGATGGTT+TGG | 0.309128 | 4.4:+64440230 | None:intergenic |
| CAATGGTATGCTCTAATATT+AGG | 0.317657 | 4.4:-64440205 | MS.gene73510:CDS |
| TGGTTTGACCTTGATGGTTT+GGG | 0.339163 | 4.4:+64440231 | None:intergenic |
| CATGATTTATTACCTCTTGT+AGG | 0.340927 | 4.4:+64439950 | None:intergenic |
| TAGACCACTGGTTTCCCATT+TGG | 0.342054 | 4.4:+64440351 | None:intergenic |
| CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4.4:-64440092 | MS.gene73510:CDS |
| CATTGGTTGAGTTGAAAATA+GGG | 0.362525 | 4.4:+64439151 | None:intergenic |
| AGACCACTGGTTTCCCATTT+GGG | 0.363737 | 4.4:+64440352 | None:intergenic |
| TGCTTTATGTATCCCGGGTT+TGG | 0.373955 | 4.4:+64440403 | None:intergenic |
| TTGACCTGGTTTGACCTTGA+TGG | 0.379172 | 4.4:+64440225 | None:intergenic |
| AAGCATTTCCAAGTGCCATT+TGG | 0.388861 | 4.4:-64439036 | MS.gene73510:CDS |
| ATAAGGCAAATTTAAGCAAC+GGG | 0.400142 | 4.4:+64438682 | None:intergenic |
| CTTGTTTGCTTTATGTATCC+CGG | 0.400586 | 4.4:+64440397 | None:intergenic |
| CAAACACTTTATAGCCTCAA+TGG | 0.405480 | 4.4:-64440109 | MS.gene73510:CDS |
| ACAATTGGAGATGGAAGAAA+TGG | 0.406784 | 4.4:-64438922 | MS.gene73510:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4.4:-64440083 | MS.gene73510:CDS |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4.4:-64440145 | MS.gene73510:CDS |
| GACCTTGATGGTTTGGGAGA+TGG | 0.428706 | 4.4:+64440237 | None:intergenic |
| TTCCAAGTGCCATTTGGAAA+AGG | 0.447631 | 4.4:-64439030 | MS.gene73510:CDS |
| ATGATGGTTGAAGCATTTGC+TGG | 0.456953 | 4.4:-64438886 | MS.gene73510:CDS |
| AATGGACCCTCCTCAAAGCC+TGG | 0.458291 | 4.4:+64439174 | None:intergenic |
| TACAACATGAAATTCACAAT+TGG | 0.459725 | 4.4:-64438937 | MS.gene73510:CDS |
| AAGAACATGCCTCCAGGTTG+TGG | 0.465220 | 4.4:+64440307 | None:intergenic |
| TTGTGTCTCCACTCCCTGGT+TGG | 0.465969 | 4.4:-64439098 | MS.gene73510:CDS |
| GGAAACATTCACTTCCCAAA+TGG | 0.468129 | 4.4:-64440366 | MS.gene73510:CDS |
| GCTGCTCAAAGTTCCCGTTT+CGG | 0.476983 | 4.4:+64440428 | None:intergenic |
| GAAACATTCACTTCCCAAAT+GGG | 0.478945 | 4.4:-64440365 | MS.gene73510:CDS |
| GCATTACCTTCTGGTGACCT+AGG | 0.482374 | 4.4:+64441167 | None:intergenic |
| AGTAAGAAACCCAGGCTTTG+AGG | 0.494686 | 4.4:-64439184 | MS.gene73510:CDS |
| TTACCTCTTGTAGGCATAGG+AGG | 0.498735 | 4.4:+64439959 | None:intergenic |
| TTATTACCTCTTGTAGGCAT+AGG | 0.499782 | 4.4:+64439956 | None:intergenic |
| ATCACTGGTGGGCCACAACC+TGG | 0.505369 | 4.4:-64440319 | MS.gene73510:CDS |
| ATGAAATTCACAATTGGAGA+TGG | 0.507745 | 4.4:-64438931 | MS.gene73510:CDS |
| CTTTGAGCAGCAACCAAACC+CGG | 0.508898 | 4.4:-64440416 | MS.gene73510:CDS |
| TACTGCTTCAGCATTTGCTA+AGG | 0.513359 | 4.4:-64441195 | MS.gene73510:CDS |
| GATCTTGTGTCTCCACTCCC+TGG | 0.513929 | 4.4:-64439102 | MS.gene73510:CDS |
| TCAATAATCCAACCAGGGAG+TGG | 0.521330 | 4.4:+64439090 | None:intergenic |
| TGGAGGAAGTATGACACCAT+TGG | 0.523499 | 4.4:+64439134 | None:intergenic |
| CATAAAGCAAACAAGACTCA+TGG | 0.527099 | 4.4:-64440389 | MS.gene73510:CDS |
| GGAGTTCATGCAGTTAGACT+TGG | 0.527950 | 4.4:-64440271 | MS.gene73510:CDS |
| TTGTTTGCTTTATGTATCCC+GGG | 0.530146 | 4.4:+64440398 | None:intergenic |
| TCAAGGTCAAACCAGGTCAA+TGG | 0.532647 | 4.4:-64440222 | MS.gene73510:CDS |
| AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4.4:-64440091 | MS.gene73510:CDS |
| TGTTCTTAATATTTGTGCAA+TGG | 0.534254 | 4.4:+64438975 | None:intergenic |
| GTTGAGTTGAAAATAGGGAA+TGG | 0.535417 | 4.4:+64439156 | None:intergenic |
| GTAGGGTCTTCTTGAACACC+AGG | 0.544065 | 4.4:+64440025 | None:intergenic |
| AATAAGGCAAATTTAAGCAA+CGG | 0.544457 | 4.4:+64438681 | None:intergenic |
| ATAGCAACAGCATCTAAAAG+TGG | 0.545849 | 4.4:+64439995 | None:intergenic |
| ACTATAACTTGATCAAGGAC+AGG | 0.546115 | 4.4:+64438709 | None:intergenic |
| CTAGTTGAGTATATCACTGG+TGG | 0.547165 | 4.4:-64440331 | MS.gene73510:CDS |
| GGAGCAGTGGAACTTGTAGC+AGG | 0.547530 | 4.4:-64439009 | MS.gene73510:CDS |
| CATGAACTCCATGTGATACT+GGG | 0.548593 | 4.4:+64440284 | None:intergenic |
| ATAAAGCAAACAAGACTCAT+GGG | 0.549653 | 4.4:-64440388 | MS.gene73510:CDS |
| GGTCTAGTTGAGTATATCAC+TGG | 0.552750 | 4.4:-64440334 | MS.gene73510:CDS |
| ACTGGGAAGAACATGCCTCC+AGG | 0.554594 | 4.4:+64440301 | None:intergenic |
| TCTAAAAGTGGACCACAAGT+AGG | 0.555580 | 4.4:+64440007 | None:intergenic |
| ATGGACCCTCCTCAAAGCCT+GGG | 0.559365 | 4.4:+64439175 | None:intergenic |
| CTCCATCTCCCAAACCATCA+AGG | 0.560309 | 4.4:-64440239 | MS.gene73510:CDS |
| CATTACCTTCTGGTGACCTA+GGG | 0.562998 | 4.4:+64441168 | None:intergenic |
| CTCTAATATTAGGAGCCTCT+AGG | 0.564285 | 4.4:-64440195 | MS.gene73510:CDS |
| CAGTGGAACTTGTAGCAGGA+AGG | 0.566806 | 4.4:-64439005 | MS.gene73510:CDS |
| CTAAAAGTGGACCACAAGTA+GGG | 0.573254 | 4.4:+64440008 | None:intergenic |
| GGGATACTATAACTTGATCA+AGG | 0.576380 | 4.4:+64438704 | None:intergenic |
| TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4.4:-64440093 | MS.gene73510:CDS |
| GATATACTCAACTAGACCAC+TGG | 0.583672 | 4.4:+64440339 | None:intergenic |
| CAAACCATCAAGGTCAAACC+AGG | 0.588869 | 4.4:-64440229 | MS.gene73510:CDS |
| GCCATTTGGAAAAGGAGCAG+TGG | 0.592376 | 4.4:-64439022 | MS.gene73510:CDS |
| AGGCTATAAAGTGTTTGCAA+AGG | 0.598543 | 4.4:+64440115 | None:intergenic |
| CTTGATGGTTTGGGAGATGG+AGG | 0.600334 | 4.4:+64440240 | None:intergenic |
| ATTAGAGCATACCATTGACC+TGG | 0.601979 | 4.4:+64440211 | None:intergenic |
| AGTGGAACTTGTAGCAGGAA+GGG | 0.605417 | 4.4:-64439004 | MS.gene73510:CDS |
| CATTTGCTAAGGTTCACCCT+AGG | 0.605861 | 4.4:-64441184 | MS.gene73510:CDS |
| TGGATGTCATGGTTCAATGA+TGG | 0.615968 | 4.4:-64438902 | MS.gene73510:CDS |
| AGAGATTCAATAATCCAACC+AGG | 0.617420 | 4.4:+64439084 | None:intergenic |
| AAGCAATAACATCACCATTG+AGG | 0.621145 | 4.4:+64440095 | None:intergenic |
| AAGAAACCCAGGCTTTGAGG+AGG | 0.630194 | 4.4:-64439181 | MS.gene73510:CDS |
| GCTAATTTAGTAAGAAACCC+AGG | 0.630800 | 4.4:-64439192 | MS.gene73510:CDS |
| AGAAACCCAGGCTTTGAGGA+GGG | 0.638290 | 4.4:-64439180 | MS.gene73510:CDS |
| GATGGAAGAAATGGATGTCA+TGG | 0.638960 | 4.4:-64438913 | MS.gene73510:CDS |
| TATCCTCCTATGCCTACAAG+AGG | 0.642129 | 4.4:-64439962 | MS.gene73510:intron |
| AAAGGAACATCACCAGATTG+TGG | 0.644013 | 4.4:+64440133 | None:intergenic |
| AAAGTTACATTCCATAACCC+TGG | 0.644128 | 4.4:-64440043 | MS.gene73510:CDS |
| ATCTTGAGCACAAGTCCTAG+AGG | 0.645614 | 4.4:+64440180 | None:intergenic |
| TAGTTGAGTATATCACTGGT+GGG | 0.646961 | 4.4:-64440330 | MS.gene73510:CDS |
| CTATAACTTGATCAAGGACA+GGG | 0.647070 | 4.4:+64438710 | None:intergenic |
| TTTGAGCAGCAACCAAACCC+GGG | 0.654449 | 4.4:-64440415 | MS.gene73510:CDS |
| GTTCAAGAAGACCCTACTTG+TGG | 0.656462 | 4.4:-64440019 | MS.gene73510:CDS |
| AAGGCAAATTTAAGCAACGG+GGG | 0.680606 | 4.4:+64438684 | None:intergenic |
| ATGTTCTTCCCAGTATCACA+TGG | 0.682236 | 4.4:-64440292 | MS.gene73510:CDS |
| CTTCCCAAATGGGAAACCAG+TGG | 0.686658 | 4.4:-64440355 | MS.gene73510:CDS |
| TAAAGCAAACAAGACTCATG+GGG | 0.692569 | 4.4:-64440387 | MS.gene73510:CDS |
| GGAACATCACCAGATTGTGG+AGG | 0.701281 | 4.4:+64440136 | None:intergenic |
| GAGATTCAATAATCCAACCA+GGG | 0.703212 | 4.4:+64439085 | None:intergenic |
| GTTCACCCTAGGTCACCAGA+AGG | 0.709847 | 4.4:-64441173 | MS.gene73510:intron |
| TAGGGTCTTCTTGAACACCA+GGG | 0.712676 | 4.4:+64440026 | None:intergenic |
| ACTGGTGGGCCACAACCTGG+AGG | 0.722510 | 4.4:-64440316 | MS.gene73510:CDS |
| TAAGGCAAATTTAAGCAACG+GGG | 0.741093 | 4.4:+64438683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACTATTTTGATTTTTTT+TGG | - | chr4.4:64440202-64440221 | MS.gene73510:CDS | 10.0% |
| !!! | ATATATTTTTTTTTTGAAGA+AGG | - | chr4.4:64440154-64440173 | MS.gene73510:CDS | 10.0% |
| !! | AAGAAATGAAAGAAAAATAT+TGG | - | chr4.4:64439030-64439049 | MS.gene73510:CDS | 15.0% |
| !! | AATTATATGAAATTGTAGAT+TGG | - | chr4.4:64438991-64439010 | MS.gene73510:CDS | 15.0% |
| !!! | GATTTAAAATTGATTTGTTA+AGG | - | chr4.4:64440371-64440390 | MS.gene73510:CDS | 15.0% |
| !! | AAAACCATAAATTTGACAAA+TGG | - | chr4.4:64440298-64440317 | MS.gene73510:CDS | 20.0% |
| !! | AAAATAAATGTATAGAGCAA+AGG | + | chr4.4:64439394-64439413 | None:intergenic | 20.0% |
| !! | AAATCAACAACAAAAACAAT+TGG | + | chr4.4:64440067-64440086 | None:intergenic | 20.0% |
| !! | CTAACTTACATATATACATT+AGG | - | chr4.4:64440125-64440144 | MS.gene73510:CDS | 20.0% |
| !! | CTTTGAATCAATGAATTTAA+TGG | + | chr4.4:64440879-64440898 | None:intergenic | 20.0% |
| !! | TACATATCTTCTTTAATGTT+GGG | - | chr4.4:64440661-64440680 | MS.gene73510:intron | 20.0% |
| !! | TATATAATAAGAAGTTGCAT+CGG | + | chr4.4:64439234-64439253 | None:intergenic | 20.0% |
| !! | TTCATATTAAATTGCTAACA+AGG | - | chr4.4:64438906-64438925 | MS.gene73510:CDS | 20.0% |
| !!! | TTTTTGTTGTTGATTTGTTT+TGG | - | chr4.4:64440071-64440090 | MS.gene73510:CDS | 20.0% |
| ! | ATCTATATTCGACTAAAAAG+TGG | - | chr4.4:64439053-64439072 | MS.gene73510:CDS | 25.0% |
| ! | CTACATATCTTCTTTAATGT+TGG | - | chr4.4:64440660-64440679 | MS.gene73510:intron | 25.0% |
| ! | TACAACATGAAATTCACAAT+TGG | - | chr4.4:64440995-64441014 | MS.gene73510:intron | 25.0% |
| ! | TCGACAAGTAAATATAATGT+CGG | - | chr4.4:64439297-64439316 | MS.gene73510:intron | 25.0% |
| ! | TGTTCTTAATATTTGTGCAA+TGG | + | chr4.4:64440960-64440979 | None:intergenic | 25.0% |
| ! | TGTTTCATTGTTTGAATCTA+AGG | - | chr4.4:64438831-64438850 | MS.gene73510:CDS | 25.0% |
| ! | TTCATGTTGTAGACTTTATT+TGG | + | chr4.4:64440986-64441005 | None:intergenic | 25.0% |
| ! | TTCTCCATTTGTCAAATTTA+TGG | + | chr4.4:64440305-64440324 | None:intergenic | 25.0% |
| !! | AAAGTTCCTTTTAAATCTGT+TGG | - | chr4.4:64441082-64441101 | MS.gene73510:intron | 25.0% |
| !! | ATGAATGATAGTGTAATGTT+TGG | + | chr4.4:64439134-64439153 | None:intergenic | 25.0% |
| !! | ATTTTACAACTTTCTCTAAG+TGG | - | chr4.4:64440349-64440368 | MS.gene73510:CDS | 25.0% |
| !!! | CATACAAAGATTGATGATTT+TGG | - | chr4.4:64441187-64441206 | MS.gene73510:CDS | 25.0% |
| AAGTATGCTCTGACTTTAAA+TGG | - | chr4.4:64440551-64440570 | MS.gene73510:intron | 30.0% | |
| ACACTAAAATTGACACTAGA+TGG | + | chr4.4:64440529-64440548 | None:intergenic | 30.0% | |
| AGTATGCTCTGACTTTAAAT+GGG | - | chr4.4:64440552-64440571 | MS.gene73510:intron | 30.0% | |
| ATAAAGCAAACAAGACTCAT+GGG | - | chr4.4:64439544-64439563 | MS.gene73510:intron | 30.0% | |
| ATCAAACCTGAAACCTTAAA+AGG | + | chr4.4:64440505-64440524 | None:intergenic | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | - | chr4.4:64441001-64441020 | MS.gene73510:intron | 30.0% | |
| ATTCTTCTCTATATCACAAC+TGG | + | chr4.4:64438954-64438973 | None:intergenic | 30.0% | |
| CAATGGTATGCTCTAATATT+AGG | - | chr4.4:64439727-64439746 | MS.gene73510:intron | 30.0% | |
| CATGATTTATTACCTCTTGT+AGG | + | chr4.4:64439985-64440004 | None:intergenic | 30.0% | |
| CGACAAGTAAATATAATGTC+GGG | - | chr4.4:64439298-64439317 | MS.gene73510:intron | 30.0% | |
| CTATATATCTTACCCATTTG+AGG | - | chr4.4:64440442-64440461 | MS.gene73510:intron | 30.0% | |
| TCTAAACTGTCAAGATATGA+AGG | + | chr4.4:64439186-64439205 | None:intergenic | 30.0% | |
| TGATATAGAGAAGAATGAAG+TGG | - | chr4.4:64438958-64438977 | MS.gene73510:CDS | 30.0% | |
| TTTCTTACTAAATTAGCTGC+AGG | + | chr4.4:64440737-64440756 | None:intergenic | 30.0% | |
| ! | CCTTTTAAATCTGTTGGAAA+GGG | - | chr4.4:64441088-64441107 | MS.gene73510:intron | 30.0% |
| ! | CTTAAAGTTTTCTTCCGAAA+CGG | - | chr4.4:64439490-64439509 | MS.gene73510:intron | 30.0% |
| ! | TAATGTTGGGATTTGTGTTT+TGG | - | chr4.4:64440674-64440693 | MS.gene73510:intron | 30.0% |
| ! | TCCTTTTAAATCTGTTGGAA+AGG | - | chr4.4:64441087-64441106 | MS.gene73510:intron | 30.0% |
| ! | TTAAAGTTTTCTTCCGAAAC+GGG | - | chr4.4:64439491-64439510 | MS.gene73510:intron | 30.0% |
| ! | TTTAGATGCTGTTGCTATTA+GGG | - | chr4.4:64439942-64439961 | MS.gene73510:intron | 30.0% |
| !! | ACAATTATGTACGTTGACTT+TGG | + | chr4.4:64440269-64440288 | None:intergenic | 30.0% |
| !! | ACAATTGGATTTGTTGAGAT+TGG | + | chr4.4:64440052-64440071 | None:intergenic | 30.0% |
| !! | ACGTTGACTTTGGTAAAAAT+TGG | + | chr4.4:64440259-64440278 | None:intergenic | 30.0% |
| !! | CATTGGTTGAGTTGAAAATA+GGG | + | chr4.4:64440784-64440803 | None:intergenic | 30.0% |
| !! | TTTTAGATGCTGTTGCTATT+AGG | - | chr4.4:64439941-64439960 | MS.gene73510:intron | 30.0% |
| !!! | TGTTGTTGATTTGTTTTGGT+TGG | - | chr4.4:64440075-64440094 | MS.gene73510:CDS | 30.0% |
| AAAGTTACATTCCATAACCC+TGG | - | chr4.4:64439889-64439908 | MS.gene73510:intron | 35.0% | |
| AAGCAATAACATCACCATTG+AGG | + | chr4.4:64439840-64439859 | None:intergenic | 35.0% | |
| ACAATTGGAGATGGAAGAAA+TGG | - | chr4.4:64441010-64441029 | MS.gene73510:intron | 35.0% | |
| ACTATAACTTGATCAAGGAC+AGG | + | chr4.4:64441226-64441245 | None:intergenic | 35.0% | |
| AGAGATTCAATAATCCAACC+AGG | + | chr4.4:64440851-64440870 | None:intergenic | 35.0% | |
| ATAGCAACAGCATCTAAAAG+TGG | + | chr4.4:64439940-64439959 | None:intergenic | 35.0% | |
| ATCTAAGAGAGACTAATCCA+AGG | + | chr4.4:64440608-64440627 | None:intergenic | 35.0% | |
| ATGTGCTTATTGAAGTTGCT+AGG | - | chr4.4:64439362-64439381 | MS.gene73510:intron | 35.0% | |
| CAAACACTTTATAGCCTCAA+TGG | - | chr4.4:64439823-64439842 | MS.gene73510:intron | 35.0% | |
| CATAAAGCAAACAAGACTCA+TGG | - | chr4.4:64439543-64439562 | MS.gene73510:intron | 35.0% | |
| CCCTTTCCAACAGATTTAAA+AGG | + | chr4.4:64441091-64441110 | None:intergenic | 35.0% | |
| CGTTTCGGAAGAAAACTTTA+AGG | + | chr4.4:64439492-64439511 | None:intergenic | 35.0% | |
| CTATAACTTGATCAAGGACA+GGG | + | chr4.4:64441225-64441244 | None:intergenic | 35.0% | |
| CTTGTTTGCTTTATGTATCC+CGG | + | chr4.4:64439538-64439557 | None:intergenic | 35.0% | |
| GAAACATTCACTTCCCAAAT+GGG | - | chr4.4:64439567-64439586 | MS.gene73510:intron | 35.0% | |
| GAGATTCAATAATCCAACCA+GGG | + | chr4.4:64440850-64440869 | None:intergenic | 35.0% | |
| GCTAATTTAGTAAGAAACCC+AGG | - | chr4.4:64440740-64440759 | MS.gene73510:intron | 35.0% | |
| GGGATACTATAACTTGATCA+AGG | + | chr4.4:64441231-64441250 | None:intergenic | 35.0% | |
| GTATGCTCTGACTTTAAATG+GGG | - | chr4.4:64440553-64440572 | MS.gene73510:intron | 35.0% | |
| TAAAGCAAACAAGACTCATG+GGG | - | chr4.4:64439545-64439564 | MS.gene73510:intron | 35.0% | |
| TAGTTGAGTATATCACTGGT+GGG | - | chr4.4:64439602-64439621 | MS.gene73510:intron | 35.0% | |
| TCTAAGAGAGACTAATCCAA+GGG | + | chr4.4:64440607-64440626 | None:intergenic | 35.0% | |
| TTATTACCTCTTGTAGGCAT+AGG | + | chr4.4:64439979-64439998 | None:intergenic | 35.0% | |
| TTGTTTGCTTTATGTATCCC+GGG | + | chr4.4:64439537-64439556 | None:intergenic | 35.0% | |
| ! | AATGGTGATGTTATTGCTTG+GGG | - | chr4.4:64439841-64439860 | MS.gene73510:intron | 35.0% |
| ! | AGGCTATAAAGTGTTTGCAA+AGG | + | chr4.4:64439820-64439839 | None:intergenic | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | - | chr4.4:64439840-64439859 | MS.gene73510:intron | 35.0% |
| ! | CCTATTTTCAACTCAACCAA+TGG | - | chr4.4:64440782-64440801 | MS.gene73510:intron | 35.0% |
| ! | GTTTGGAACAAATCTGCATT+AGG | + | chr4.4:64439117-64439136 | None:intergenic | 35.0% |
| ! | TCAATGGTGATGTTATTGCT+TGG | - | chr4.4:64439839-64439858 | MS.gene73510:intron | 35.0% |
| !! | CCATTGGTTGAGTTGAAAAT+AGG | + | chr4.4:64440785-64440804 | None:intergenic | 35.0% |
| !! | GATGATTTTGGAAGTATGTG+TGG | - | chr4.4:64441199-64441218 | MS.gene73510:CDS | 35.0% |
| !! | GTTGAGTTGAAAATAGGGAA+TGG | + | chr4.4:64440779-64440798 | None:intergenic | 35.0% |
| !!! | ACAAGATCTTGTTGTTTTGG+AGG | + | chr4.4:64440818-64440837 | None:intergenic | 35.0% |
| !!! | GACACAAGATCTTGTTGTTT+TGG | + | chr4.4:64440821-64440840 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGATTG+TGG | + | chr4.4:64439802-64439821 | None:intergenic | 40.0% | |
| ATGAATCTTGATTCTCTGCG+AGG | - | chr4.4:64440008-64440027 | MS.gene73510:CDS | 40.0% | |
| ATGTTCTTCCCAGTATCACA+TGG | - | chr4.4:64439640-64439659 | MS.gene73510:intron | 40.0% | |
| ATTAGAGCATACCATTGACC+TGG | + | chr4.4:64439724-64439743 | None:intergenic | 40.0% | |
| CATGAACTCCATGTGATACT+GGG | + | chr4.4:64439651-64439670 | None:intergenic | 40.0% | |
| CTAAAAGTGGACCACAAGTA+GGG | + | chr4.4:64439927-64439946 | None:intergenic | 40.0% | |
| CTAAGAGAGACTAATCCAAG+GGG | + | chr4.4:64440606-64440625 | None:intergenic | 40.0% | |
| CTAGTTGAGTATATCACTGG+TGG | - | chr4.4:64439601-64439620 | MS.gene73510:intron | 40.0% | |
| CTCTAATATTAGGAGCCTCT+AGG | - | chr4.4:64439737-64439756 | MS.gene73510:intron | 40.0% | |
| GATATACTCAACTAGACCAC+TGG | + | chr4.4:64439596-64439615 | None:intergenic | 40.0% | |
| GATGGAAGAAATGGATGTCA+TGG | - | chr4.4:64441019-64441038 | MS.gene73510:intron | 40.0% | |
| GGAAACATTCACTTCCCAAA+TGG | - | chr4.4:64439566-64439585 | MS.gene73510:intron | 40.0% | |
| GGTCTAGTTGAGTATATCAC+TGG | - | chr4.4:64439598-64439617 | MS.gene73510:intron | 40.0% | |
| TAGAGTTGAGCATTACCTTC+TGG | + | chr4.4:64438777-64438796 | None:intergenic | 40.0% | |
| TCTAAAAGTGGACCACAAGT+AGG | + | chr4.4:64439928-64439947 | None:intergenic | 40.0% | |
| TGAATCTTGATTCTCTGCGA+GGG | - | chr4.4:64440009-64440028 | MS.gene73510:CDS | 40.0% | |
| TGGATGTCATGGTTCAATGA+TGG | - | chr4.4:64441030-64441049 | MS.gene73510:intron | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | - | chr4.4:64439849-64439868 | MS.gene73510:intron | 40.0% | |
| ! | AAGCATTTCCAAGTGCCATT+TGG | - | chr4.4:64440896-64440915 | MS.gene73510:intron | 40.0% |
| ! | ATAAGAAGTTGCATCGGTGT+CGG | + | chr4.4:64439228-64439247 | None:intergenic | 40.0% |
| ! | ATGATGGTTGAAGCATTTGC+TGG | - | chr4.4:64441046-64441065 | MS.gene73510:intron | 40.0% |
| ! | CTTAGAGTGTGCTCCTTTTA+AGG | - | chr4.4:64440489-64440508 | MS.gene73510:intron | 40.0% |
| ! | TACTGCTTCAGCATTTGCTA+AGG | - | chr4.4:64438737-64438756 | MS.gene73510:CDS | 40.0% |
| ! | TGGTTTGACCTTGATGGTTT+GGG | + | chr4.4:64439704-64439723 | None:intergenic | 40.0% |
| !! | GGATTTGTTGAGATTGGACT+CGG | + | chr4.4:64440046-64440065 | None:intergenic | 40.0% |
| !! | GTGCTGTTCTGATTTTGCTT+TGG | - | chr4.4:64439459-64439478 | MS.gene73510:intron | 40.0% |
| !! | TTCCAAGTGCCATTTGGAAA+AGG | - | chr4.4:64440902-64440921 | MS.gene73510:intron | 40.0% |
| !!! | TGTGCTCCTTTTAAGGTTTC+AGG | - | chr4.4:64440496-64440515 | MS.gene73510:intron | 40.0% |
| ACCACTAGGTCAACCTCAAA+TGG | + | chr4.4:64440458-64440477 | None:intergenic | 45.0% | |
| AGTAAGAAACCCAGGCTTTG+AGG | - | chr4.4:64440748-64440767 | MS.gene73510:intron | 45.0% | |
| AGTGGAACTTGTAGCAGGAA+GGG | - | chr4.4:64440928-64440947 | MS.gene73510:intron | 45.0% | |
| ATCTTGAGCACAAGTCCTAG+AGG | + | chr4.4:64439755-64439774 | None:intergenic | 45.0% | |
| CAAACCATCAAGGTCAAACC+AGG | - | chr4.4:64439703-64439722 | MS.gene73510:intron | 45.0% | |
| CATTACCTTCTGGTGACCTA+GGG | + | chr4.4:64438767-64438786 | None:intergenic | 45.0% | |
| CCACTAGGTCAACCTCAAAT+GGG | + | chr4.4:64440457-64440476 | None:intergenic | 45.0% | |
| CTTCTTGAACACCAGGGTTA+TGG | + | chr4.4:64439903-64439922 | None:intergenic | 45.0% | |
| GCATGAACTCCATGTGATAC+TGG | + | chr4.4:64439652-64439671 | None:intergenic | 45.0% | |
| GGAGTTCATGCAGTTAGACT+TGG | - | chr4.4:64439661-64439680 | MS.gene73510:intron | 45.0% | |
| GTTCAAGAAGACCCTACTTG+TGG | - | chr4.4:64439913-64439932 | MS.gene73510:intron | 45.0% | |
| TAAATGGGGCCCTAGCAAAT+AGG | - | chr4.4:64440567-64440586 | MS.gene73510:intron | 45.0% | |
| TAGGGTCTTCTTGAACACCA+GGG | + | chr4.4:64439909-64439928 | None:intergenic | 45.0% | |
| TATCCTCCTATGCCTACAAG+AGG | - | chr4.4:64439970-64439989 | MS.gene73510:CDS | 45.0% | |
| TCAAGGTCAAACCAGGTCAA+TGG | - | chr4.4:64439710-64439729 | MS.gene73510:intron | 45.0% | |
| TCAATAATCCAACCAGGGAG+TGG | + | chr4.4:64440845-64440864 | None:intergenic | 45.0% | |
| TGCTTTATGTATCCCGGGTT+TGG | + | chr4.4:64439532-64439551 | None:intergenic | 45.0% | |
| TTACCTCTTGTAGGCATAGG+AGG | + | chr4.4:64439976-64439995 | None:intergenic | 45.0% | |
| ! | CATTTGCTAAGGTTCACCCT+AGG | - | chr4.4:64438748-64438767 | MS.gene73510:CDS | 45.0% |
| ! | CTCCTTTTCCAAATGGCACT+TGG | + | chr4.4:64440907-64440926 | None:intergenic | 45.0% |
| ! | CTGGTTTGACCTTGATGGTT+TGG | + | chr4.4:64439705-64439724 | None:intergenic | 45.0% |
| ! | TCCACTGCTCCTTTTCCAAA+TGG | + | chr4.4:64440914-64440933 | None:intergenic | 45.0% |
| ! | TGGAGGAAGTATGACACCAT+TGG | + | chr4.4:64440801-64440820 | None:intergenic | 45.0% |
| ! | TTGACCTGGTTTGACCTTGA+TGG | + | chr4.4:64439710-64439729 | None:intergenic | 45.0% |
| !! | AGACCACTGGTTTCCCATTT+GGG | + | chr4.4:64439583-64439602 | None:intergenic | 45.0% |
| !! | TAGACCACTGGTTTCCCATT+TGG | + | chr4.4:64439584-64439603 | None:intergenic | 45.0% |
| AAGAACATGCCTCCAGGTTG+TGG | + | chr4.4:64439628-64439647 | None:intergenic | 50.0% | |
| AAGATCCCAACGCAACCACT+AGG | + | chr4.4:64440472-64440491 | None:intergenic | 50.0% | |
| AATCCCACCGCCTATTTGCT+AGG | + | chr4.4:64440580-64440599 | None:intergenic | 50.0% | |
| ATCTCAGTGCCTCCACAATC+TGG | - | chr4.4:64439787-64439806 | MS.gene73510:intron | 50.0% | |
| CAGTGGAACTTGTAGCAGGA+AGG | - | chr4.4:64440927-64440946 | MS.gene73510:intron | 50.0% | |
| CTCCATCTCCCAAACCATCA+AGG | - | chr4.4:64439693-64439712 | MS.gene73510:intron | 50.0% | |
| CTTCCCAAATGGGAAACCAG+TGG | - | chr4.4:64439577-64439596 | MS.gene73510:intron | 50.0% | |
| CTTTGAGCAGCAACCAAACC+CGG | - | chr4.4:64439516-64439535 | MS.gene73510:intron | 50.0% | |
| GAGAAGAATGAAGTGGCGCT+AGG | - | chr4.4:64438965-64438984 | MS.gene73510:CDS | 50.0% | |
| GCATTACCTTCTGGTGACCT+AGG | + | chr4.4:64438768-64438787 | None:intergenic | 50.0% | |
| GCCATTTGGAAAAGGAGCAG+TGG | - | chr4.4:64440910-64440929 | MS.gene73510:intron | 50.0% | |
| GCTGCTCAAAGTTCCCGTTT+CGG | + | chr4.4:64439507-64439526 | None:intergenic | 50.0% | |
| GGAACATCACCAGATTGTGG+AGG | + | chr4.4:64439799-64439818 | None:intergenic | 50.0% | |
| GTAGGGTCTTCTTGAACACC+AGG | + | chr4.4:64439910-64439929 | None:intergenic | 50.0% | |
| GTTGACCTAGTGGTTGCGTT+GGG | - | chr4.4:64440464-64440483 | MS.gene73510:intron | 50.0% | |
| TTTGAGCAGCAACCAAACCC+GGG | - | chr4.4:64439517-64439536 | MS.gene73510:intron | 50.0% | |
| ! | ATCCCACCGCCTATTTGCTA+GGG | + | chr4.4:64440579-64440598 | None:intergenic | 50.0% |
| ! | CCCATTTGAGGTTGACCTAG+TGG | - | chr4.4:64440454-64440473 | MS.gene73510:intron | 50.0% |
| ! | CTTGATGGTTTGGGAGATGG+AGG | + | chr4.4:64439695-64439714 | None:intergenic | 50.0% |
| ! | GACCTTGATGGTTTGGGAGA+TGG | + | chr4.4:64439698-64439717 | None:intergenic | 50.0% |
| !! | AAGAAACCCAGGCTTTGAGG+AGG | - | chr4.4:64440751-64440770 | MS.gene73510:intron | 50.0% |
| !! | AGAAACCCAGGCTTTGAGGA+GGG | - | chr4.4:64440752-64440771 | MS.gene73510:intron | 50.0% |
| AATGGACCCTCCTCAAAGCC+TGG | + | chr4.4:64440761-64440780 | None:intergenic | 55.0% | |
| ACTGGGAAGAACATGCCTCC+AGG | + | chr4.4:64439634-64439653 | None:intergenic | 55.0% | |
| ATGGACCCTCCTCAAAGCCT+GGG | + | chr4.4:64440760-64440779 | None:intergenic | 55.0% | |
| ATGGGGCCCTAGCAAATAGG+CGG | - | chr4.4:64440570-64440589 | MS.gene73510:intron | 55.0% | |
| GATCTTGTGTCTCCACTCCC+TGG | - | chr4.4:64440830-64440849 | MS.gene73510:intron | 55.0% | |
| GGAGCAGTGGAACTTGTAGC+AGG | - | chr4.4:64440923-64440942 | MS.gene73510:intron | 55.0% | |
| GGTTGACCTAGTGGTTGCGT+TGG | - | chr4.4:64440463-64440482 | MS.gene73510:intron | 55.0% | |
| GTTCACCCTAGGTCACCAGA+AGG | - | chr4.4:64438759-64438778 | MS.gene73510:CDS | 55.0% | |
| TTGTGTCTCCACTCCCTGGT+TGG | - | chr4.4:64440834-64440853 | MS.gene73510:intron | 55.0% | |
| GGCCCTAGCAAATAGGCGGT+GGG | - | chr4.4:64440574-64440593 | MS.gene73510:intron | 60.0% | |
| TCTCTGCGAGGGTCTGCAGT+AGG | - | chr4.4:64440020-64440039 | MS.gene73510:CDS | 60.0% | |
| ! | ATCACTGGTGGGCCACAACC+TGG | - | chr4.4:64439613-64439632 | MS.gene73510:intron | 60.0% |
| GGCGGTGGGATTGATCCCCT+TGG | - | chr4.4:64440588-64440607 | MS.gene73510:intron | 65.0% | |
| GGGCCCTAGCAAATAGGCGG+TGG | - | chr4.4:64440573-64440592 | MS.gene73510:intron | 65.0% | |
| ! | ACTGGTGGGCCACAACCTGG+AGG | - | chr4.4:64439616-64439635 | MS.gene73510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 64438693 | 64441261 | 64438693 | ID=MS.gene73510 |
| chr4.4 | mRNA | 64438693 | 64441261 | 64438693 | ID=MS.gene73510.t1;Parent=MS.gene73510 |
| chr4.4 | exon | 64441174 | 64441261 | 64441174 | ID=MS.gene73510.t1.exon1;Parent=MS.gene73510.t1 |
| chr4.4 | CDS | 64441174 | 64441261 | 64441174 | ID=cds.MS.gene73510.t1;Parent=MS.gene73510.t1 |
| chr4.4 | exon | 64439963 | 64440457 | 64439963 | ID=MS.gene73510.t1.exon2;Parent=MS.gene73510.t1 |
| chr4.4 | CDS | 64439963 | 64440457 | 64439963 | ID=cds.MS.gene73510.t1;Parent=MS.gene73510.t1 |
| chr4.4 | exon | 64438693 | 64439213 | 64438693 | ID=MS.gene73510.t1.exon3;Parent=MS.gene73510.t1 |
| chr4.4 | CDS | 64438693 | 64439213 | 64438693 | ID=cds.MS.gene73510.t1;Parent=MS.gene73510.t1 |
| Gene Sequence |
| Protein sequence |
