Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74351.t1 | XP_013445244.1 | 90.8 | 152 | 14 | 0 | 1 | 152 | 1 | 152 | 3.00E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74351.t1 | Q9SSK5 | 34.0 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 8.9e-22 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74351.t1 | A0A072U0G0 | 90.8 | 152 | 14 | 0 | 1 | 152 | 1 | 152 | 2.1e-77 | 297.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene74351 | 0.821805 | 3.32E-53 | -1.69E-46 |
| MS.gene052211 | MS.gene74351 | 0.806752 | 7.06E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene74351 | 0.814648 | 1.38E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene74351 | 0.820602 | 6.29E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene74351 | 0.819652 | 1.04E-52 | -1.69E-46 |
| MS.gene056590 | MS.gene74351 | 0.808317 | 3.29E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene74351 | 0.805883 | 1.08E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene74351 | 0.803756 | 3.00E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene74351 | 0.813536 | 2.44E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene74351 | 0.800963 | 1.13E-48 | -1.69E-46 |
| MS.gene057261 | MS.gene74351 | 0.806249 | 9.02E-50 | -1.69E-46 |
| MS.gene058381 | MS.gene74351 | 0.952478 | 2.22E-110 | -1.69E-46 |
| MS.gene060087 | MS.gene74351 | 0.851192 | 1.04E-60 | -1.69E-46 |
| MS.gene060358 | MS.gene74351 | 0.823875 | 1.09E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74351.t1 | MTR_8g045555 | 90.789 | 152 | 14 | 0 | 1 | 152 | 1 | 152 | 5.19e-102 | 289 |
| MS.gene74351.t1 | MTR_8g045520 | 71.523 | 151 | 43 | 0 | 1 | 151 | 1 | 151 | 3.07e-83 | 241 |
| MS.gene74351.t1 | MTR_8g045570 | 70.395 | 152 | 45 | 0 | 1 | 152 | 1 | 152 | 7.04e-81 | 235 |
| MS.gene74351.t1 | MTR_8g045490 | 71.053 | 152 | 44 | 0 | 1 | 152 | 1 | 152 | 2.00e-80 | 234 |
| MS.gene74351.t1 | MTR_8g045400 | 69.079 | 152 | 46 | 1 | 1 | 152 | 1 | 151 | 2.71e-77 | 226 |
| MS.gene74351.t1 | MTR_8g045695 | 67.763 | 152 | 48 | 1 | 1 | 152 | 1 | 151 | 4.02e-76 | 223 |
| MS.gene74351.t1 | MTR_8g045300 | 64.901 | 151 | 53 | 0 | 1 | 151 | 1 | 151 | 1.33e-75 | 222 |
| MS.gene74351.t1 | MTR_8g045735 | 65.132 | 152 | 52 | 1 | 1 | 152 | 1 | 151 | 6.00e-73 | 216 |
| MS.gene74351.t1 | MTR_8g045665 | 64.474 | 152 | 53 | 1 | 1 | 152 | 1 | 151 | 4.60e-72 | 213 |
| MS.gene74351.t1 | MTR_8g045640 | 64.474 | 152 | 53 | 1 | 1 | 152 | 1 | 151 | 2.02e-71 | 212 |
| MS.gene74351.t1 | MTR_8g045560 | 63.158 | 152 | 55 | 1 | 1 | 152 | 1 | 151 | 3.60e-69 | 206 |
| MS.gene74351.t1 | MTR_1g030810 | 42.484 | 153 | 85 | 2 | 1 | 151 | 1 | 152 | 2.04e-40 | 133 |
| MS.gene74351.t1 | MTR_1g030820 | 36.601 | 153 | 94 | 2 | 1 | 151 | 1 | 152 | 9.98e-37 | 124 |
| MS.gene74351.t1 | MTR_1g030840 | 39.103 | 156 | 87 | 4 | 1 | 149 | 1 | 155 | 2.61e-32 | 113 |
| MS.gene74351.t1 | MTR_1g031640 | 36.486 | 148 | 85 | 4 | 7 | 152 | 7 | 147 | 2.35e-28 | 102 |
| MS.gene74351.t1 | MTR_8g012550 | 33.103 | 145 | 94 | 3 | 6 | 149 | 8 | 150 | 1.57e-25 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74351.t1 | AT1G70890 | 34.000 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 1.22e-27 | 100 |
| MS.gene74351.t1 | AT5G28010 | 34.000 | 150 | 96 | 3 | 3 | 150 | 15 | 163 | 3.71e-27 | 100 |
| MS.gene74351.t1 | AT5G28010 | 34.000 | 150 | 96 | 3 | 3 | 150 | 15 | 163 | 3.71e-27 | 100 |
| MS.gene74351.t1 | AT1G70840 | 32.667 | 150 | 98 | 3 | 3 | 150 | 20 | 168 | 4.96e-27 | 99.8 |
| MS.gene74351.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 7.14e-27 | 99.4 |
| MS.gene74351.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 1.50e-26 | 99.4 |
| MS.gene74351.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 5.15e-26 | 99.4 |
| MS.gene74351.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 1.90e-25 | 99.4 |
| MS.gene74351.t1 | AT1G70830 | 33.333 | 150 | 97 | 3 | 3 | 150 | 184 | 332 | 1.03e-23 | 94.7 |
| MS.gene74351.t1 | AT1G70850 | 32.667 | 150 | 98 | 3 | 3 | 150 | 9 | 157 | 1.92e-24 | 94.7 |
| MS.gene74351.t1 | AT1G70830 | 33.333 | 150 | 97 | 3 | 3 | 150 | 137 | 285 | 3.45e-24 | 95.1 |
| MS.gene74351.t1 | AT1G70830 | 32.258 | 93 | 62 | 1 | 59 | 150 | 31 | 123 | 2.20e-14 | 68.9 |
| MS.gene74351.t1 | AT1G70850 | 32.667 | 150 | 98 | 3 | 3 | 150 | 9 | 157 | 5.73e-24 | 95.1 |
| MS.gene74351.t1 | AT1G70850 | 33.571 | 140 | 90 | 3 | 13 | 150 | 175 | 313 | 1.97e-23 | 93.6 |
| MS.gene74351.t1 | AT1G70850 | 32.667 | 150 | 98 | 3 | 3 | 150 | 9 | 157 | 5.73e-24 | 95.1 |
| MS.gene74351.t1 | AT1G70850 | 33.571 | 140 | 90 | 3 | 13 | 150 | 175 | 313 | 1.97e-23 | 93.6 |
| MS.gene74351.t1 | AT1G23130 | 30.201 | 149 | 102 | 2 | 3 | 150 | 10 | 157 | 1.19e-23 | 90.9 |
| MS.gene74351.t1 | AT1G70870 | 34.437 | 151 | 86 | 4 | 1 | 151 | 1 | 138 | 1.92e-21 | 84.3 |
| MS.gene74351.t1 | AT5G28000 | 28.667 | 150 | 104 | 3 | 3 | 150 | 13 | 161 | 1.97e-21 | 85.1 |
| MS.gene74351.t1 | AT1G70880 | 28.000 | 150 | 105 | 3 | 3 | 150 | 8 | 156 | 1.61e-20 | 82.8 |
| MS.gene74351.t1 | AT1G23120 | 27.083 | 144 | 100 | 3 | 7 | 150 | 7 | 145 | 1.36e-19 | 80.1 |
| MS.gene74351.t1 | AT1G23120 | 27.083 | 144 | 100 | 3 | 7 | 150 | 57 | 195 | 5.44e-19 | 79.7 |
| MS.gene74351.t1 | AT1G14930 | 30.323 | 155 | 101 | 4 | 1 | 152 | 1 | 151 | 2.70e-18 | 77.0 |
| MS.gene74351.t1 | AT2G01520 | 29.677 | 155 | 102 | 4 | 1 | 152 | 1 | 151 | 6.13e-16 | 70.5 |
| MS.gene74351.t1 | AT4G23670 | 30.323 | 155 | 101 | 4 | 1 | 152 | 1 | 151 | 6.67e-16 | 70.5 |
| MS.gene74351.t1 | AT2G01530 | 29.032 | 155 | 103 | 4 | 1 | 152 | 1 | 151 | 3.94e-15 | 68.6 |
| MS.gene74351.t1 | AT1G35260 | 22.517 | 151 | 113 | 3 | 2 | 150 | 1 | 149 | 6.63e-15 | 67.8 |
| MS.gene74351.t1 | AT1G24020 | 29.412 | 153 | 104 | 3 | 1 | 151 | 1 | 151 | 8.73e-15 | 67.8 |
| MS.gene74351.t1 | AT1G24020 | 29.412 | 153 | 104 | 3 | 1 | 151 | 1 | 151 | 8.73e-15 | 67.8 |
| MS.gene74351.t1 | AT4G14060 | 29.677 | 155 | 102 | 4 | 1 | 152 | 1 | 151 | 3.98e-14 | 65.9 |
| MS.gene74351.t1 | AT1G14940 | 27.815 | 151 | 106 | 3 | 1 | 150 | 1 | 149 | 7.88e-14 | 65.1 |
| MS.gene74351.t1 | AT4G23680 | 28.387 | 155 | 104 | 4 | 1 | 152 | 1 | 151 | 1.82e-13 | 64.3 |
| MS.gene74351.t1 | AT1G14950 | 28.758 | 153 | 104 | 4 | 1 | 151 | 1 | 150 | 8.11e-13 | 62.4 |
Find 29 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTCTTCGGTGGAGATAT+TGG | 0.246212 | 8.4:+55643255 | MS.gene74351:CDS |
| AGCTCTTCGGTGGAGATATT+GGG | 0.329670 | 8.4:+55643256 | MS.gene74351:CDS |
| GTCATCCCCTTGATGTAGCT+TGG | 0.401893 | 8.4:-55641744 | None:intergenic |
| AAACATTGGACTTATGTCAT+AGG | 0.403651 | 8.4:+55641788 | MS.gene74351:CDS |
| ATATTCAATAGTCCATTTGA+TGG | 0.406324 | 8.4:-55643340 | None:intergenic |
| TAGAGATATTGATGCTCATC+TGG | 0.421031 | 8.4:+55643425 | MS.gene74351:CDS |
| ACGTAGTCCATCCAGCCATT+AGG | 0.444330 | 8.4:-55643390 | None:intergenic |
| GCAGCAGTGCTGCCATCAAA+TGG | 0.452968 | 8.4:+55643328 | MS.gene74351:CDS |
| AGCTACATCAAGGGGATGAC+TGG | 0.453220 | 8.4:+55641747 | MS.gene74351:CDS |
| GAGGATATTGACCCTCCTAA+TGG | 0.460289 | 8.4:+55643375 | MS.gene74351:CDS |
| GGTAAACTTAGTACTGAACT+TGG | 0.476618 | 8.4:+55641635 | MS.gene74351:CDS |
| ATCTCCACCGAAGAGCTTGT+AGG | 0.483925 | 8.4:-55643250 | None:intergenic |
| ATTCAAATAAATGATAATAG+TGG | 0.502034 | 8.4:+55643306 | MS.gene74351:CDS |
| CTTCCAAGGATGGTGCTCAA+TGG | 0.508173 | 8.4:+55641614 | None:intergenic |
| CATGAAACCAAGCTACATCA+AGG | 0.525025 | 8.4:+55641737 | MS.gene74351:CDS |
| ATATTGACCCTCCTAATGGC+TGG | 0.525673 | 8.4:+55643379 | MS.gene74351:CDS |
| AAACTCACCTACAAGCTCTT+CGG | 0.527071 | 8.4:+55643243 | MS.gene74351:CDS |
| TTTCATGAACTCTTTCACAA+TGG | 0.533960 | 8.4:-55641721 | None:intergenic |
| TAGTCCATCCAGCCATTAGG+AGG | 0.553714 | 8.4:-55643387 | None:intergenic |
| TGACCCTCCTAATGGCTGGA+TGG | 0.577019 | 8.4:+55643383 | MS.gene74351:CDS |
| TGACTGGCATCACACTGATA+CGG | 0.601188 | 8.4:+55641763 | MS.gene74351:CDS |
| GTAAACTTAGTACTGAACTT+GGG | 0.605653 | 8.4:+55641636 | MS.gene74351:CDS |
| ACACTGATACGGTTAAACAT+TGG | 0.605669 | 8.4:+55641774 | MS.gene74351:CDS |
| GCTCTTCGGTGGAGATATTG+GGG | 0.615379 | 8.4:+55643257 | MS.gene74351:CDS |
| ATGAAACCAAGCTACATCAA+GGG | 0.623559 | 8.4:+55641738 | MS.gene74351:CDS |
| CTCACCTACAAGCTCTTCGG+TGG | 0.628417 | 8.4:+55643246 | MS.gene74351:CDS |
| TGAAACCAAGCTACATCAAG+GGG | 0.635241 | 8.4:+55641739 | MS.gene74351:CDS |
| AGTCCATCCAGCCATTAGGA+GGG | 0.659406 | 8.4:-55643386 | None:intergenic |
| TGAATATGAGAAGATCAATG+AGG | 0.667184 | 8.4:+55643356 | MS.gene74351:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAGAACAATATTTGT+AGG | - | chr8.4:55643060-55643079 | None:intergenic | 15.0% |
| !! | ACGTAAATTGTTAAAATAAA+AGG | - | chr8.4:55642143-55642162 | None:intergenic | 15.0% |
| !! | ATTCAAATAAATGATAATAG+TGG | + | chr8.4:55643306-55643325 | MS.gene74351:CDS | 15.0% |
| !!! | CTTTCTAATTTTATCATTTT+GGG | - | chr8.4:55642069-55642088 | None:intergenic | 15.0% |
| !!! | TAAAATTACTTTAAAACAAC+TGG | + | chr8.4:55642974-55642993 | MS.gene74351:intron | 15.0% |
| !! | ATTATTGAAAACGAAAGATA+AGG | - | chr8.4:55643108-55643127 | None:intergenic | 20.0% |
| !! | CATATGAAAATAAAATTGTG+TGG | - | chr8.4:55643140-55643159 | None:intergenic | 20.0% |
| !! | TATTCTAATTAAGGTCTTTA+AGG | + | chr8.4:55642015-55642034 | MS.gene74351:intron | 20.0% |
| !!! | CACACAATTTTATTTTCATA+TGG | + | chr8.4:55643138-55643157 | MS.gene74351:intron | 20.0% |
| !!! | GCTTTCTAATTTTATCATTT+TGG | - | chr8.4:55642070-55642089 | None:intergenic | 20.0% |
| !!! | TAATTTTATCATTTTGGGAT+AGG | - | chr8.4:55642064-55642083 | None:intergenic | 20.0% |
| ! | ATATTCAATAGTCCATTTGA+TGG | - | chr8.4:55643343-55643362 | None:intergenic | 25.0% |
| ! | CTTAAACTAGAAATCTGAAA+AGG | + | chr8.4:55643017-55643036 | MS.gene74351:intron | 25.0% |
| AAAACAACTGGTACAAAACT+TGG | + | chr8.4:55642986-55643005 | MS.gene74351:intron | 30.0% | |
| AAACATTGGACTTATGTCAT+AGG | + | chr8.4:55641788-55641807 | MS.gene74351:CDS | 30.0% | |
| AAACTTAGAGATCCAACTAA+GGG | - | chr8.4:55642791-55642810 | None:intergenic | 30.0% | |
| ACAAGTTAACATTTCCCTTA+GGG | + | chr8.4:55642338-55642357 | MS.gene74351:intron | 30.0% | |
| GTGAATAAGATTTGCAGAAT+CGG | + | chr8.4:55642937-55642956 | MS.gene74351:intron | 30.0% | |
| TAAACTTAGAGATCCAACTA+AGG | - | chr8.4:55642792-55642811 | None:intergenic | 30.0% | |
| TCTTAAGTGTTACACTTTGT+GGG | - | chr8.4:55642557-55642576 | None:intergenic | 30.0% | |
| TGAATATGAGAAGATCAATG+AGG | + | chr8.4:55643356-55643375 | MS.gene74351:CDS | 30.0% | |
| TTTCATGAACTCTTTCACAA+TGG | - | chr8.4:55641724-55641743 | None:intergenic | 30.0% | |
| ! | GATGAATTGATGATACTATG+AGG | - | chr8.4:55642477-55642496 | None:intergenic | 30.0% |
| ! | GTAAACTTAGTACTGAACTT+GGG | + | chr8.4:55641636-55641655 | MS.gene74351:CDS | 30.0% |
| ! | TACAGGTACTATTTTATCGT+TGG | - | chr8.4:55642622-55642641 | None:intergenic | 30.0% |
| ! | TTGATAGTAAGTAAACGTAG+AGG | - | chr8.4:55642114-55642133 | None:intergenic | 30.0% |
| !! | AGTGTTAACTTGTGTCTTTA+GGG | + | chr8.4:55642176-55642195 | MS.gene74351:intron | 30.0% |
| !!! | AGTCATGAGAATGACTTTTT+TGG | + | chr8.4:55642376-55642395 | MS.gene74351:intron | 30.0% |
| !!! | GATTCTAGTGTGTTTTTTGA+AGG | + | chr8.4:55642908-55642927 | MS.gene74351:intron | 30.0% |
| ACACTGATACGGTTAAACAT+TGG | + | chr8.4:55641774-55641793 | MS.gene74351:CDS | 35.0% | |
| AGTAATGCTTTGCAACATCT+TGG | - | chr8.4:55642648-55642667 | None:intergenic | 35.0% | |
| ATGAAACCAAGCTACATCAA+GGG | + | chr8.4:55641738-55641757 | MS.gene74351:CDS | 35.0% | |
| ATGCCATTGTACAAATAGTG+GGG | - | chr8.4:55642442-55642461 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | - | chr8.4:55642556-55642575 | None:intergenic | 35.0% | |
| GACAAGTTAACATTTCCCTT+AGG | + | chr8.4:55642337-55642356 | MS.gene74351:intron | 35.0% | |
| GATGCCATTGTACAAATAGT+GGG | - | chr8.4:55642443-55642462 | None:intergenic | 35.0% | |
| GTACAATGGCATCAAAAGTT+TGG | + | chr8.4:55642450-55642469 | MS.gene74351:intron | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | - | chr8.4:55642558-55642577 | None:intergenic | 35.0% | |
| TAGAGATATTGATGCTCATC+TGG | + | chr8.4:55643425-55643444 | MS.gene74351:CDS | 35.0% | |
| TGATGCCATTGTACAAATAG+TGG | - | chr8.4:55642444-55642463 | None:intergenic | 35.0% | |
| TGTTACGCTTATAACAAGGT+TGG | - | chr8.4:55642533-55642552 | None:intergenic | 35.0% | |
| TTCCCTTAGGGAAAATTCTA+TGG | + | chr8.4:55642350-55642369 | MS.gene74351:intron | 35.0% | |
| ! | CACCATAGAATTTTCCCTAA+GGG | - | chr8.4:55642355-55642374 | None:intergenic | 35.0% |
| ! | GCTTTTACATGTTCTCTTGT+TGG | + | chr8.4:55642088-55642107 | MS.gene74351:intron | 35.0% |
| ! | GGTAAACTTAGTACTGAACT+TGG | + | chr8.4:55641635-55641654 | MS.gene74351:CDS | 35.0% |
| ! | TCACCATAGAATTTTCCCTA+AGG | - | chr8.4:55642356-55642375 | None:intergenic | 35.0% |
| !! | CAGTGTTAACTTGTGTCTTT+AGG | + | chr8.4:55642175-55642194 | MS.gene74351:intron | 35.0% |
| !!! | GTGTGTTTTTTGAAGGACTA+AGG | + | chr8.4:55642915-55642934 | MS.gene74351:intron | 35.0% |
| AAACTCACCTACAAGCTCTT+CGG | + | chr8.4:55643243-55643262 | MS.gene74351:CDS | 40.0% | |
| ACACCCCACTATTTGTACAA+TGG | + | chr8.4:55642436-55642455 | MS.gene74351:intron | 40.0% | |
| CATGAAACCAAGCTACATCA+AGG | + | chr8.4:55641737-55641756 | MS.gene74351:CDS | 40.0% | |
| TAGAGATCCAACTAAGGGAA+GGG | - | chr8.4:55642786-55642805 | None:intergenic | 40.0% | |
| TCATTACCTTGTGTCTTGAG+CGG | + | chr8.4:55642315-55642334 | MS.gene74351:intron | 40.0% | |
| TGAAACCAAGCTACATCAAG+GGG | + | chr8.4:55641739-55641758 | MS.gene74351:CDS | 40.0% | |
| TTAGAGATCCAACTAAGGGA+AGG | - | chr8.4:55642787-55642806 | None:intergenic | 40.0% | |
| TTGCAACATCTTGGACTTAC+AGG | - | chr8.4:55642639-55642658 | None:intergenic | 40.0% | |
| !! | GTCTTTAAGGAGTACTCAAG+AGG | + | chr8.4:55642028-55642047 | MS.gene74351:intron | 40.0% |
| AAGCTCTTCGGTGGAGATAT+TGG | + | chr8.4:55643255-55643274 | MS.gene74351:CDS | 45.0% | |
| AGCTCTTCGGTGGAGATATT+GGG | + | chr8.4:55643256-55643275 | MS.gene74351:CDS | 45.0% | |
| ATATTGACCCTCCTAATGGC+TGG | + | chr8.4:55643379-55643398 | MS.gene74351:CDS | 45.0% | |
| GAGGATATTGACCCTCCTAA+TGG | + | chr8.4:55643375-55643394 | MS.gene74351:CDS | 45.0% | |
| TCTCGTCACATGACAACAGA+TGG | + | chr8.4:55643168-55643187 | MS.gene74351:intron | 45.0% | |
| TGACTGGCATCACACTGATA+CGG | + | chr8.4:55641763-55641782 | MS.gene74351:CDS | 45.0% | |
| ! | CTACTAGTTTCTCCTCCTGA+AGG | + | chr8.4:55642813-55642832 | MS.gene74351:intron | 45.0% |
| ! | GGGGTGTTACGCTTATAACA+AGG | - | chr8.4:55642537-55642556 | None:intergenic | 45.0% |
| !! | TATAAAAAATATTCTAATTA+AGG | + | chr8.4:55642006-55642025 | MS.gene74351:intron | 5.0% |
| !!! | AATTGAATTTAAAAAATTTT+AGG | - | chr8.4:55641892-55641911 | None:intergenic | 5.0% |
| ACGTAGTCCATCCAGCCATT+AGG | - | chr8.4:55643393-55643412 | None:intergenic | 50.0% | |
| ACTTGTCCGCTCAAGACACA+AGG | - | chr8.4:55642324-55642343 | None:intergenic | 50.0% | |
| AGAAGCTCCCTTCCCTTAGT+TGG | + | chr8.4:55642776-55642795 | MS.gene74351:intron | 50.0% | |
| AGCTACATCAAGGGGATGAC+TGG | + | chr8.4:55641747-55641766 | MS.gene74351:CDS | 50.0% | |
| AGTCCATCCAGCCATTAGGA+GGG | - | chr8.4:55643389-55643408 | None:intergenic | 50.0% | |
| ATCTCCACCGAAGAGCTTGT+AGG | - | chr8.4:55643253-55643272 | None:intergenic | 50.0% | |
| GAATCGAACCTGAGACCTTC+AGG | - | chr8.4:55642831-55642850 | None:intergenic | 50.0% | |
| GCTCTTCGGTGGAGATATTG+GGG | + | chr8.4:55643257-55643276 | MS.gene74351:CDS | 50.0% | |
| GTCATCCCCTTGATGTAGCT+TGG | - | chr8.4:55641747-55641766 | None:intergenic | 50.0% | |
| TAGTCCATCCAGCCATTAGG+AGG | - | chr8.4:55643390-55643409 | None:intergenic | 50.0% | |
| TTTCTCCTCCTGAAGGTCTC+AGG | + | chr8.4:55642820-55642839 | MS.gene74351:intron | 50.0% | |
| CTCACCTACAAGCTCTTCGG+TGG | + | chr8.4:55643246-55643265 | MS.gene74351:CDS | 55.0% | |
| GCAGCAGTGCTGCCATCAAA+TGG | + | chr8.4:55643328-55643347 | MS.gene74351:CDS | 55.0% | |
| GGAGCTTCTACAGTGCAGTC+AGG | - | chr8.4:55642765-55642784 | None:intergenic | 55.0% | |
| TCGAACCTGAGACCTTCAGG+AGG | - | chr8.4:55642828-55642847 | None:intergenic | 55.0% | |
| TGACCCTCCTAATGGCTGGA+TGG | + | chr8.4:55643383-55643402 | MS.gene74351:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55641623 | 55643458 | 55641623 | ID=MS.gene74351 |
| chr8.4 | mRNA | 55641623 | 55643458 | 55641623 | ID=MS.gene74351.t1;Parent=MS.gene74351 |
| chr8.4 | exon | 55641623 | 55641809 | 55641623 | ID=MS.gene74351.t1.exon1;Parent=MS.gene74351.t1 |
| chr8.4 | CDS | 55641623 | 55641809 | 55641623 | ID=cds.MS.gene74351.t1;Parent=MS.gene74351.t1 |
| chr8.4 | exon | 55643187 | 55643458 | 55643187 | ID=MS.gene74351.t1.exon2;Parent=MS.gene74351.t1 |
| chr8.4 | CDS | 55643187 | 55643458 | 55643187 | ID=cds.MS.gene74351.t1;Parent=MS.gene74351.t1 |
| Gene Sequence |
| Protein sequence |
