Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74967.t1 | XP_013470283.1 | 98.1 | 210 | 4 | 0 | 1 | 210 | 1 | 210 | 2.30E-112 | 414.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74967.t1 | Q9SR72 | 59.5 | 210 | 75 | 3 | 10 | 209 | 12 | 221 | 7.4e-67 | 255.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74967.t1 | A0A072VRM6 | 98.1 | 210 | 4 | 0 | 1 | 210 | 1 | 210 | 1.7e-112 | 414.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene74967 | 0.807594 | 4.68E-50 | -1.69E-46 |
| MS.gene049178 | MS.gene74967 | 0.8208 | 5.66E-53 | -1.69E-46 |
| MS.gene04917 | MS.gene74967 | 0.801401 | 9.16E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene74967 | 0.838801 | 2.32E-57 | -1.69E-46 |
| MS.gene050629 | MS.gene74967 | -0.817897 | 2.60E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene74967 | 0.814522 | 1.48E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene74967 | 0.814867 | 1.24E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene74967 | 0.822917 | 1.83E-53 | -1.69E-46 |
| MS.gene052389 | MS.gene74967 | 0.808242 | 3.41E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene74967 | 0.826836 | 2.18E-54 | -1.69E-46 |
| MS.gene052856 | MS.gene74967 | 0.80462 | 1.98E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene74967 | 0.811314 | 7.45E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene74967 | 0.810972 | 8.84E-51 | -1.69E-46 |
| MS.gene056830 | MS.gene74967 | -0.821395 | 4.13E-53 | -1.69E-46 |
| MS.gene058809 | MS.gene74967 | -0.812611 | 3.89E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene74967 | 0.85365 | 2.08E-61 | -1.69E-46 |
| MS.gene060870 | MS.gene74967 | 0.810602 | 1.06E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene74967 | 0.824842 | 6.48E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene74967 | -0.810336 | 1.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74967.t1 | MTR_1g112200 | 98.095 | 210 | 4 | 0 | 1 | 210 | 1 | 210 | 3.64e-151 | 418 |
| MS.gene74967.t1 | MTR_1g060120 | 56.373 | 204 | 78 | 1 | 17 | 209 | 20 | 223 | 7.58e-82 | 243 |
| MS.gene74967.t1 | MTR_1g085500 | 42.381 | 210 | 114 | 3 | 7 | 209 | 7 | 216 | 3.68e-53 | 170 |
| MS.gene74967.t1 | MTR_7g111240 | 45.596 | 193 | 99 | 4 | 22 | 209 | 19 | 210 | 7.77e-53 | 169 |
| MS.gene74967.t1 | MTR_7g111240 | 44.898 | 196 | 99 | 4 | 22 | 209 | 19 | 213 | 3.13e-52 | 167 |
| MS.gene74967.t1 | MTR_1g085140 | 43.434 | 198 | 105 | 3 | 19 | 209 | 20 | 217 | 2.28e-51 | 165 |
| MS.gene74967.t1 | MTR_6g005330 | 43.721 | 215 | 105 | 6 | 7 | 207 | 3 | 215 | 1.45e-47 | 155 |
| MS.gene74967.t1 | MTR_6g005310 | 43.981 | 216 | 106 | 6 | 5 | 207 | 2 | 215 | 2.75e-47 | 155 |
| MS.gene74967.t1 | MTR_1g079490 | 44.059 | 202 | 98 | 6 | 19 | 207 | 18 | 217 | 4.85e-47 | 154 |
| MS.gene74967.t1 | MTR_6g005360 | 43.721 | 215 | 108 | 5 | 5 | 207 | 2 | 215 | 5.27e-47 | 154 |
| MS.gene74967.t1 | MTR_6g005340 | 44.700 | 217 | 103 | 8 | 5 | 207 | 2 | 215 | 6.00e-47 | 154 |
| MS.gene74967.t1 | MTR_5g046410 | 41.627 | 209 | 90 | 7 | 19 | 206 | 18 | 215 | 2.00e-43 | 145 |
| MS.gene74967.t1 | MTR_5g046430 | 41.627 | 209 | 90 | 7 | 19 | 206 | 18 | 215 | 2.00e-43 | 145 |
| MS.gene74967.t1 | MTR_4g017030 | 41.627 | 209 | 90 | 7 | 19 | 206 | 18 | 215 | 2.00e-43 | 145 |
| MS.gene74967.t1 | MTR_4g017050 | 41.546 | 207 | 93 | 7 | 19 | 206 | 18 | 215 | 2.02e-43 | 145 |
| MS.gene74967.t1 | MTR_4g017040 | 40.179 | 224 | 97 | 8 | 9 | 206 | 3 | 215 | 2.86e-43 | 145 |
| MS.gene74967.t1 | MTR_2g019250 | 41.627 | 209 | 90 | 7 | 19 | 206 | 18 | 215 | 5.06e-43 | 144 |
| MS.gene74967.t1 | MTR_1g023770 | 39.109 | 202 | 116 | 4 | 11 | 207 | 10 | 209 | 9.98e-43 | 143 |
| MS.gene74967.t1 | MTR_5g036570 | 41.753 | 194 | 105 | 4 | 22 | 207 | 26 | 219 | 1.07e-42 | 143 |
| MS.gene74967.t1 | MTR_2g030855 | 40.513 | 195 | 108 | 5 | 20 | 207 | 19 | 212 | 4.43e-42 | 141 |
| MS.gene74967.t1 | MTR_2g031270 | 40.957 | 188 | 103 | 5 | 27 | 207 | 27 | 213 | 9.29e-42 | 140 |
| MS.gene74967.t1 | MTR_6g005350 | 40.196 | 204 | 100 | 6 | 19 | 207 | 18 | 214 | 8.94e-38 | 130 |
| MS.gene74967.t1 | MTR_2g041580 | 36.946 | 203 | 119 | 3 | 9 | 204 | 3 | 203 | 2.70e-37 | 129 |
| MS.gene74967.t1 | MTR_2g041570 | 36.765 | 204 | 120 | 3 | 9 | 205 | 3 | 204 | 2.79e-37 | 129 |
| MS.gene74967.t1 | MTR_2g030895 | 41.860 | 172 | 94 | 4 | 42 | 207 | 7 | 178 | 5.85e-37 | 127 |
| MS.gene74967.t1 | MTR_2g041550 | 36.816 | 201 | 122 | 2 | 9 | 204 | 3 | 203 | 8.18e-37 | 128 |
| MS.gene74967.t1 | MTR_8g020590 | 36.058 | 208 | 115 | 5 | 10 | 205 | 1 | 202 | 1.14e-35 | 125 |
| MS.gene74967.t1 | MTR_2g030865 | 41.279 | 172 | 95 | 4 | 42 | 207 | 7 | 178 | 1.37e-35 | 124 |
| MS.gene74967.t1 | MTR_3g019710 | 34.300 | 207 | 125 | 5 | 8 | 207 | 3 | 205 | 1.05e-34 | 122 |
| MS.gene74967.t1 | MTR_8g020630 | 35.437 | 206 | 124 | 6 | 8 | 207 | 3 | 205 | 3.91e-34 | 121 |
| MS.gene74967.t1 | MTR_2g086640 | 34.286 | 210 | 112 | 5 | 12 | 208 | 8 | 204 | 1.78e-33 | 119 |
| MS.gene74967.t1 | MTR_8g020610 | 32.367 | 207 | 129 | 5 | 8 | 207 | 1 | 203 | 5.26e-33 | 118 |
| MS.gene74967.t1 | MTR_2g036120 | 33.333 | 207 | 127 | 5 | 8 | 207 | 3 | 205 | 6.87e-33 | 117 |
| MS.gene74967.t1 | MTR_6g005380 | 39.109 | 202 | 108 | 5 | 7 | 197 | 9 | 206 | 7.52e-33 | 117 |
| MS.gene74967.t1 | MTR_2g045100 | 36.517 | 178 | 106 | 4 | 33 | 207 | 32 | 205 | 7.81e-33 | 117 |
| MS.gene74967.t1 | MTR_3g019680 | 35.266 | 207 | 119 | 6 | 8 | 207 | 6 | 204 | 1.32e-32 | 117 |
| MS.gene74967.t1 | MTR_8g020650 | 37.433 | 187 | 108 | 6 | 27 | 207 | 22 | 205 | 1.44e-32 | 117 |
| MS.gene74967.t1 | MTR_3g019650 | 35.749 | 207 | 118 | 7 | 8 | 207 | 6 | 204 | 5.14e-32 | 115 |
| MS.gene74967.t1 | MTR_8g007300 | 35.294 | 187 | 113 | 2 | 22 | 200 | 25 | 211 | 9.90e-32 | 115 |
| MS.gene74967.t1 | MTR_3g096330 | 41.765 | 170 | 87 | 2 | 15 | 172 | 563 | 732 | 1.24e-31 | 121 |
| MS.gene74967.t1 | MTR_2g044040 | 32.850 | 207 | 128 | 5 | 8 | 207 | 3 | 205 | 1.41e-31 | 114 |
| MS.gene74967.t1 | MTR_8g020670 | 33.990 | 203 | 125 | 5 | 11 | 207 | 6 | 205 | 2.96e-31 | 113 |
| MS.gene74967.t1 | MTR_4g010340 | 33.163 | 196 | 122 | 4 | 16 | 207 | 11 | 201 | 3.65e-31 | 113 |
| MS.gene74967.t1 | MTR_8g020763 | 34.706 | 170 | 107 | 3 | 40 | 207 | 19 | 186 | 2.59e-30 | 110 |
| MS.gene74967.t1 | MTR_4g052770 | 33.019 | 212 | 122 | 5 | 5 | 208 | 7 | 206 | 3.06e-30 | 110 |
| MS.gene74967.t1 | MTR_8g020750 | 33.173 | 208 | 128 | 4 | 8 | 207 | 4 | 208 | 5.98e-30 | 110 |
| MS.gene74967.t1 | MTR_0284s0010 | 32.850 | 207 | 128 | 5 | 8 | 207 | 3 | 205 | 8.07e-30 | 110 |
| MS.gene74967.t1 | MTR_2g086620 | 31.731 | 208 | 120 | 5 | 12 | 208 | 9 | 205 | 9.37e-30 | 109 |
| MS.gene74967.t1 | MTR_2g086630 | 31.731 | 208 | 120 | 5 | 12 | 208 | 9 | 205 | 9.68e-30 | 109 |
| MS.gene74967.t1 | MTR_4g052780 | 37.500 | 160 | 96 | 2 | 53 | 208 | 47 | 206 | 2.83e-29 | 108 |
| MS.gene74967.t1 | MTR_2g031300 | 40.625 | 160 | 70 | 4 | 42 | 196 | 7 | 146 | 6.86e-28 | 103 |
| MS.gene74967.t1 | MTR_3g073170 | 34.595 | 185 | 110 | 5 | 29 | 207 | 27 | 206 | 1.14e-27 | 104 |
| MS.gene74967.t1 | MTR_7g011340 | 31.351 | 185 | 122 | 2 | 27 | 207 | 22 | 205 | 3.56e-27 | 103 |
| MS.gene74967.t1 | MTR_5g031460 | 30.435 | 207 | 133 | 5 | 8 | 207 | 3 | 205 | 7.67e-27 | 102 |
| MS.gene74967.t1 | MTR_8g020770 | 30.097 | 206 | 137 | 3 | 8 | 207 | 4 | 208 | 1.05e-26 | 102 |
| MS.gene74967.t1 | MTR_8g020760 | 32.857 | 210 | 125 | 8 | 8 | 207 | 4 | 207 | 1.09e-26 | 102 |
| MS.gene74967.t1 | MTR_2g019780 | 32.258 | 186 | 113 | 7 | 29 | 207 | 29 | 208 | 2.50e-24 | 95.9 |
| MS.gene74967.t1 | MTR_3g019810 | 28.846 | 208 | 133 | 5 | 3 | 204 | 104 | 302 | 3.43e-21 | 89.4 |
| MS.gene74967.t1 | MTR_4g027415 | 35.200 | 125 | 70 | 5 | 27 | 144 | 22 | 142 | 1.17e-13 | 65.9 |
| MS.gene74967.t1 | MTR_2g072560 | 32.759 | 116 | 68 | 4 | 8 | 116 | 3 | 115 | 3.12e-11 | 59.3 |
| MS.gene74967.t1 | MTR_3g019610 | 34.906 | 106 | 59 | 4 | 8 | 106 | 3 | 105 | 4.10e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74967.t1 | AT3G10080 | 60.194 | 206 | 70 | 3 | 13 | 209 | 19 | 221 | 1.50e-86 | 255 |
| MS.gene74967.t1 | AT3G10080 | 60.194 | 206 | 70 | 3 | 13 | 209 | 90 | 292 | 5.86e-86 | 256 |
| MS.gene74967.t1 | AT1G02335 | 42.326 | 215 | 116 | 4 | 1 | 207 | 1 | 215 | 7.29e-56 | 177 |
| MS.gene74967.t1 | AT3G04200 | 45.070 | 213 | 104 | 5 | 8 | 209 | 14 | 224 | 1.08e-53 | 172 |
| MS.gene74967.t1 | AT1G18980 | 45.192 | 208 | 105 | 4 | 7 | 207 | 13 | 218 | 9.06e-53 | 169 |
| MS.gene74967.t1 | AT1G18970 | 42.308 | 208 | 111 | 4 | 7 | 207 | 13 | 218 | 1.05e-51 | 166 |
| MS.gene74967.t1 | AT5G26700 | 40.865 | 208 | 116 | 4 | 7 | 209 | 6 | 211 | 1.91e-51 | 165 |
| MS.gene74967.t1 | AT3G62020 | 43.204 | 206 | 109 | 4 | 12 | 209 | 12 | 217 | 2.80e-51 | 165 |
| MS.gene74967.t1 | AT5G39160 | 41.346 | 208 | 112 | 5 | 7 | 207 | 11 | 215 | 1.23e-50 | 163 |
| MS.gene74967.t1 | AT5G39160 | 40.845 | 213 | 110 | 6 | 7 | 207 | 11 | 219 | 1.43e-50 | 163 |
| MS.gene74967.t1 | AT5G39130 | 40.376 | 213 | 111 | 6 | 7 | 207 | 11 | 219 | 2.33e-50 | 163 |
| MS.gene74967.t1 | AT5G39190 | 40.845 | 213 | 110 | 6 | 7 | 207 | 11 | 219 | 2.49e-50 | 163 |
| MS.gene74967.t1 | AT1G09560 | 44.103 | 195 | 102 | 3 | 22 | 209 | 23 | 217 | 3.41e-50 | 162 |
| MS.gene74967.t1 | AT5G38960 | 44.059 | 202 | 99 | 5 | 19 | 207 | 22 | 222 | 5.02e-50 | 162 |
| MS.gene74967.t1 | AT3G05950 | 43.925 | 214 | 105 | 6 | 7 | 208 | 12 | 222 | 8.93e-50 | 162 |
| MS.gene74967.t1 | AT3G05930 | 38.710 | 217 | 125 | 3 | 1 | 209 | 1 | 217 | 8.53e-49 | 159 |
| MS.gene74967.t1 | AT5G39110 | 41.014 | 217 | 113 | 6 | 5 | 207 | 5 | 220 | 2.39e-48 | 158 |
| MS.gene74967.t1 | AT5G39180 | 40.845 | 213 | 112 | 5 | 8 | 207 | 8 | 219 | 9.00e-48 | 156 |
| MS.gene74967.t1 | AT5G38910 | 42.326 | 215 | 109 | 6 | 6 | 207 | 7 | 219 | 1.02e-47 | 156 |
| MS.gene74967.t1 | AT3G62020 | 45.699 | 186 | 95 | 4 | 28 | 209 | 5 | 188 | 1.43e-47 | 155 |
| MS.gene74967.t1 | AT5G38940 | 42.424 | 198 | 101 | 5 | 22 | 207 | 25 | 221 | 1.50e-47 | 155 |
| MS.gene74967.t1 | AT5G38940 | 42.424 | 198 | 101 | 5 | 22 | 207 | 49 | 245 | 2.10e-47 | 156 |
| MS.gene74967.t1 | AT5G39150 | 40.845 | 213 | 112 | 5 | 8 | 207 | 8 | 219 | 2.26e-47 | 155 |
| MS.gene74967.t1 | AT5G39120 | 40.639 | 219 | 113 | 6 | 5 | 207 | 2 | 219 | 5.68e-47 | 154 |
| MS.gene74967.t1 | AT5G39160 | 39.130 | 207 | 100 | 6 | 7 | 207 | 11 | 197 | 4.27e-45 | 149 |
| MS.gene74967.t1 | AT5G39190 | 39.130 | 207 | 100 | 6 | 7 | 207 | 11 | 197 | 6.31e-45 | 148 |
| MS.gene74967.t1 | AT3G04180 | 39.500 | 200 | 110 | 4 | 20 | 208 | 23 | 222 | 8.87e-45 | 149 |
| MS.gene74967.t1 | AT4G14630 | 39.500 | 200 | 107 | 5 | 21 | 207 | 24 | 222 | 1.89e-44 | 148 |
| MS.gene74967.t1 | AT3G04170 | 41.315 | 213 | 111 | 6 | 8 | 210 | 13 | 221 | 2.35e-44 | 148 |
| MS.gene74967.t1 | AT3G04150 | 39.623 | 212 | 115 | 5 | 8 | 208 | 13 | 222 | 6.02e-44 | 147 |
| MS.gene74967.t1 | AT5G38930 | 40.201 | 199 | 106 | 5 | 21 | 207 | 24 | 221 | 2.12e-43 | 145 |
| MS.gene74967.t1 | AT3G04190 | 40.299 | 201 | 107 | 5 | 20 | 208 | 23 | 222 | 2.70e-43 | 145 |
| MS.gene74967.t1 | AT3G04150 | 38.222 | 225 | 113 | 6 | 8 | 208 | 13 | 235 | 2.55e-42 | 143 |
| MS.gene74967.t1 | AT5G20630 | 38.798 | 183 | 107 | 2 | 27 | 204 | 22 | 204 | 1.57e-39 | 135 |
| MS.gene74967.t1 | AT1G10460 | 36.181 | 199 | 113 | 5 | 22 | 207 | 18 | 215 | 6.47e-39 | 133 |
| MS.gene74967.t1 | AT5G61750 | 38.983 | 177 | 101 | 3 | 9 | 178 | 5 | 181 | 1.98e-34 | 122 |
| MS.gene74967.t1 | AT1G74820 | 31.390 | 223 | 134 | 6 | 2 | 208 | 7 | 226 | 3.77e-33 | 119 |
| MS.gene74967.t1 | AT1G72610 | 36.508 | 189 | 103 | 3 | 27 | 204 | 19 | 201 | 4.23e-33 | 118 |
| MS.gene74967.t1 | AT5G38910 | 35.681 | 213 | 89 | 6 | 6 | 207 | 7 | 182 | 5.36e-31 | 112 |
| MS.gene74967.t1 | AT5G38950 | 49.206 | 63 | 30 | 1 | 138 | 198 | 2 | 64 | 2.99e-12 | 61.2 |
Find 21 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGATTAAAGATGAGCTTT+TGG | 0.263245 | 1.3:+76070707 | MS.gene74967:CDS |
| GAATTTGTTATCTTCTGATT+TGG | 0.267937 | 1.3:-76070259 | None:intergenic |
| CCAGTATCTTTGAAGTTTCC+TGG | 0.322734 | 1.3:-76070342 | None:intergenic |
| TTCTGATCCGGATCCTGTTA+TGG | 0.323739 | 1.3:+76070224 | MS.gene74967:CDS |
| GTGAATTCAAATGTGTTTCC+AGG | 0.358885 | 1.3:+76070381 | MS.gene74967:CDS |
| CCAGGAAACTTCAAAGATAC+TGG | 0.364740 | 1.3:+76070342 | MS.gene74967:CDS |
| TTTGGAGAAAGGTGAGGTTA+TGG | 0.393881 | 1.3:+76070563 | MS.gene74967:CDS |
| TGAAAATGCACAAGTCCTCT+TGG | 0.414763 | 1.3:-76070591 | None:intergenic |
| GCTATGCAGTAATCCATAAC+AGG | 0.434646 | 1.3:-76070237 | None:intergenic |
| ATAGCAACTTCTGTTGCTCT+TGG | 0.444865 | 1.3:-76070477 | None:intergenic |
| CAGTAATCCATAACAGGATC+CGG | 0.469062 | 1.3:-76070231 | None:intergenic |
| TTTCCAGGTTTAAACACTCT+TGG | 0.469660 | 1.3:+76070396 | MS.gene74967:CDS |
| CAGCAATGATGAAACACATA+AGG | 0.504374 | 1.3:-76070194 | None:intergenic |
| ACACATAAGGACTAAAAGAA+TGG | 0.521199 | 1.3:-76070181 | None:intergenic |
| AGAAGTTGCTATTGTGTTGG+AGG | 0.523101 | 1.3:+76070488 | MS.gene74967:CDS |
| AACAGAAGTTGCTATTGTGT+TGG | 0.541553 | 1.3:+76070485 | MS.gene74967:CDS |
| GAAGTTGCTATTGTGTTGGA+GGG | 0.567803 | 1.3:+76070489 | MS.gene74967:CDS |
| ACTCCAAGAGTGTTTAAACC+TGG | 0.567991 | 1.3:-76070399 | None:intergenic |
| GAAATCTTCAACTGTTGCTG+TGG | 0.571728 | 1.3:-76070298 | None:intergenic |
| AGCTTTCTAAGTTAAAGAAG+AGG | 0.576087 | 1.3:+76070757 | MS.gene74967:CDS |
| GTTGCTCTTGGATGAAAGTG+AGG | 0.618955 | 1.3:-76070465 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTCCAAATGTTGTTTT+TGG | + | chr1.3:76070681-76070700 | MS.gene74967:CDS | 20.0% |
| !! | CAAGATTTTTGCTAAAGTTT+TGG | + | chr1.3:76070545-76070564 | MS.gene74967:CDS | 25.0% |
| !!! | GAATTTGTTATCTTCTGATT+TGG | - | chr1.3:76070262-76070281 | None:intergenic | 25.0% |
| AAACTACCAAAAATAGTAGC+AGG | - | chr1.3:76070636-76070655 | None:intergenic | 30.0% | |
| ACACATAAGGACTAAAAGAA+TGG | - | chr1.3:76070184-76070203 | None:intergenic | 30.0% | |
| AGCTTTCTAAGTTAAAGAAG+AGG | + | chr1.3:76070757-76070776 | MS.gene74967:CDS | 30.0% | |
| TGAGATCCAAAAACAACATT+TGG | - | chr1.3:76070690-76070709 | None:intergenic | 30.0% | |
| TTGGAGGGAAAAATTTATTC+AGG | + | chr1.3:76070504-76070523 | MS.gene74967:CDS | 30.0% | |
| ! | AGATACTGGATTTTCTTCAA+TGG | + | chr1.3:76070356-76070375 | MS.gene74967:CDS | 30.0% |
| ! | AGCTTTTGGACTTAATTCTA+AGG | + | chr1.3:76070734-76070753 | MS.gene74967:CDS | 30.0% |
| ! | GATACTGGATTTTCTTCAAT+GGG | + | chr1.3:76070357-76070376 | MS.gene74967:CDS | 30.0% |
| ! | TCAGATTAAAGATGAGCTTT+TGG | + | chr1.3:76070707-76070726 | MS.gene74967:CDS | 30.0% |
| !! | AGTTTTGATAGTCAAAATCC+TGG | + | chr1.3:76070651-76070670 | MS.gene74967:CDS | 30.0% |
| !! | TTTGGAATTTTCATCAAACC+AGG | - | chr1.3:76070672-76070691 | None:intergenic | 30.0% |
| !! | TTTTCTGGTATAAAACTACC+AGG | + | chr1.3:76070324-76070343 | MS.gene74967:CDS | 30.0% |
| !!! | GTTGAAGATTTCACTTTTTC+TGG | + | chr1.3:76070309-76070328 | MS.gene74967:CDS | 30.0% |
| !!! | TTTGCTAAAGTTTTGGAGAA+AGG | + | chr1.3:76070552-76070571 | MS.gene74967:CDS | 30.0% |
| CAGCAATGATGAAACACATA+AGG | - | chr1.3:76070197-76070216 | None:intergenic | 35.0% | |
| GTGAATTCAAATGTGTTTCC+AGG | + | chr1.3:76070381-76070400 | MS.gene74967:CDS | 35.0% | |
| TTTCCAGGTTTAAACACTCT+TGG | + | chr1.3:76070396-76070415 | MS.gene74967:CDS | 35.0% | |
| ! | AACAGAAGTTGCTATTGTGT+TGG | + | chr1.3:76070485-76070504 | MS.gene74967:CDS | 35.0% |
| ! | GATGTTCCTGCTACTATTTT+TGG | + | chr1.3:76070627-76070646 | MS.gene74967:CDS | 35.0% |
| ! | GTGCATTTTCAGATGAATGT+TGG | + | chr1.3:76070603-76070622 | MS.gene74967:CDS | 35.0% |
| !! | GAGCTTTTGGAAAAAGCTTT+TGG | + | chr1.3:76070720-76070739 | MS.gene74967:CDS | 35.0% |
| !! | GTTAGAGCAGATTTTGATGT+TGG | + | chr1.3:76070429-76070448 | MS.gene74967:CDS | 35.0% |
| !!! | TAAAGTTTTGGAGAAAGGTG+AGG | + | chr1.3:76070557-76070576 | MS.gene74967:CDS | 35.0% |
| ATAGCAACTTCTGTTGCTCT+TGG | - | chr1.3:76070480-76070499 | None:intergenic | 40.0% | |
| CAGTAATCCATAACAGGATC+CGG | - | chr1.3:76070234-76070253 | None:intergenic | 40.0% | |
| CCAGGAAACTTCAAAGATAC+TGG | + | chr1.3:76070342-76070361 | MS.gene74967:CDS | 40.0% | |
| GAAATCTTCAACTGTTGCTG+TGG | - | chr1.3:76070301-76070320 | None:intergenic | 40.0% | |
| GCTATGCAGTAATCCATAAC+AGG | - | chr1.3:76070240-76070259 | None:intergenic | 40.0% | |
| TGAAAATGCACAAGTCCTCT+TGG | - | chr1.3:76070594-76070613 | None:intergenic | 40.0% | |
| TTTGGAGAAAGGTGAGGTTA+TGG | + | chr1.3:76070563-76070582 | MS.gene74967:CDS | 40.0% | |
| ! | AGAAGTTGCTATTGTGTTGG+AGG | + | chr1.3:76070488-76070507 | MS.gene74967:CDS | 40.0% |
| ! | GAAGTTGCTATTGTGTTGGA+GGG | + | chr1.3:76070489-76070508 | MS.gene74967:CDS | 40.0% |
| ! | GAGGTTATGGTTTTTCCAAG+AGG | + | chr1.3:76070576-76070595 | MS.gene74967:CDS | 40.0% |
| !! | ACTCCAAGAGTGTTTAAACC+TGG | - | chr1.3:76070402-76070421 | None:intergenic | 40.0% |
| !! | AGAGCAGATTTTGATGTTGG+TGG | + | chr1.3:76070432-76070451 | MS.gene74967:CDS | 40.0% |
| !! | CCAGTATCTTTGAAGTTTCC+TGG | - | chr1.3:76070345-76070364 | None:intergenic | 40.0% |
| !!! | TGCTGCTTTTTGTTCTGATC+CGG | + | chr1.3:76070212-76070231 | MS.gene74967:CDS | 40.0% |
| GTTGCTCTTGGATGAAAGTG+AGG | - | chr1.3:76070468-76070487 | None:intergenic | 45.0% | |
| TTCTGATCCGGATCCTGTTA+TGG | + | chr1.3:76070224-76070243 | MS.gene74967:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 76070162 | 76070794 | 76070162 | ID=MS.gene74967 |
| chr1.3 | mRNA | 76070162 | 76070794 | 76070162 | ID=MS.gene74967.t1;Parent=MS.gene74967 |
| chr1.3 | exon | 76070162 | 76070794 | 76070162 | ID=MS.gene74967.t1.exon1;Parent=MS.gene74967.t1 |
| chr1.3 | CDS | 76070162 | 76070794 | 76070162 | ID=cds.MS.gene74967.t1;Parent=MS.gene74967.t1 |
| Gene Sequence |
| Protein sequence |
