AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75646


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75646.t1 MTR_3g084750 89.946 368 21 4 17 382 58 411 0.0 643
MS.gene75646.t1 MTR_3g084750 89.946 368 21 4 17 382 6 359 0.0 640
MS.gene75646.t1 MTR_1g015930 46.185 249 130 3 55 303 50 294 1.05e-62 205
MS.gene75646.t1 MTR_1g019050 33.203 256 138 8 48 295 43 273 2.95e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75646.t1 AT4G12240 56.977 344 126 5 49 382 30 361 1.16e-134 389
MS.gene75646.t1 AT5G52010 46.400 250 128 4 53 302 71 314 2.16e-62 205

Find 97 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGCTATTCTGAGCTTAT+TGG 0.177466 3.3:+70904567 None:intergenic
AGCTGAAACGGGCAGGGTTT+TGG 0.228799 3.3:-70904171 MS.gene75646:CDS
TATGTAGAGTAGGGCTGTTC+TGG 0.246065 3.3:-70904636 MS.gene75646:CDS
AGAATAGCTGCAGCTTCTTT+TGG 0.246225 3.3:-70904556 MS.gene75646:CDS
TGTCTCAAGACTGTTGTTAT+TGG 0.251511 3.3:-70903998 MS.gene75646:CDS
AGAATTGATGGAAGTGATTC+TGG 0.273168 3.3:-70906951 None:intergenic
GTCTCAAGACTGTTGTTATT+GGG 0.278322 3.3:-70903997 MS.gene75646:CDS
AGGGAGTAGAAAGGTGAAAT+TGG 0.313386 3.3:-70904281 MS.gene75646:CDS
GGGTAAGTATGCTATGAAAA+TGG 0.326589 3.3:-70904257 MS.gene75646:CDS
TTCATAAGGTGGGATTGAAT+TGG 0.333130 3.3:+70904594 None:intergenic
TTGGGGTCACGGAAGGATTT+CGG 0.339709 3.3:-70904680 MS.gene75646:CDS
GAGACGACACTGTCATTCTT+GGG 0.346415 3.3:-70904698 MS.gene75646:CDS
TGAGACGACACTGTCATTCT+TGG 0.346598 3.3:-70904699 MS.gene75646:CDS
TCATAGGCGGGTTGAGTGTT+TGG 0.351038 3.3:-70904077 MS.gene75646:CDS
AGCTTATTGGCAACTTCATA+AGG 0.365446 3.3:+70904580 None:intergenic
ACAGGAACTGTTGTATCGTT+TGG 0.373770 3.3:-70904452 MS.gene75646:CDS
CTGTATCGGTTGTGGAAAAC+TGG 0.377175 3.3:-70903886 MS.gene75646:CDS
GTTGTATCGTTTGGAGGATA+AGG 0.381598 3.3:-70904443 MS.gene75646:CDS
TTCCAGATGAGGCTGTTTCA+TGG 0.386867 3.3:-70906922 MS.gene75646:CDS
CTCATGTTTGTCGTGTTTGT+GGG 0.391232 3.3:-70904399 MS.gene75646:CDS
CCCCATGAAACAGCCTCATC+TGG 0.394063 3.3:+70906920 None:intergenic
GGGTTCAAACTGTGTTAGAT+AGG 0.398462 3.3:-70904150 MS.gene75646:CDS
CCTCATGTTTGTCGTGTTTG+TGG 0.413883 3.3:-70904400 MS.gene75646:CDS
GCCAAACCATACCCAACTTT+AGG 0.418960 3.3:+70904199 None:intergenic
TCCTAAAGTTGGGTATGGTT+TGG 0.425982 3.3:-70904200 MS.gene75646:CDS
TTGACTCCTAAAGTTGGGTA+TGG 0.429889 3.3:-70904205 MS.gene75646:CDS
TCCAGATGAGGCTGTTTCAT+GGG 0.436801 3.3:-70906921 MS.gene75646:CDS
TCATAAGGTGGGATTGAATT+GGG 0.443856 3.3:+70904595 None:intergenic
AGGATCTGCTAAAACTGTTA+AGG 0.452905 3.3:-70906888 MS.gene75646:intron
TTTGATGGGGAAGGCGAAGA+AGG 0.453176 3.3:-70903912 MS.gene75646:CDS
GATGCAGTTCCTAAAACATC+TGG 0.457052 3.3:-70903788 MS.gene75646:CDS
AAATTAGACTCCGATGATAA+TGG 0.457209 3.3:-70903695 MS.gene75646:CDS
TTGTATCGTTTGGAGGATAA+GGG 0.462961 3.3:-70904442 MS.gene75646:CDS
GCTGATGAGCTGAAACGGGC+AGG 0.464292 3.3:-70904178 MS.gene75646:CDS
TGGTGGATATGATGGATCAT+AGG 0.472905 3.3:-70904093 MS.gene75646:CDS
TCGTGATATATTGAAAAGAT+TGG 0.474466 3.3:-70903858 MS.gene75646:CDS
ATTGCTAAAAGTGTGGCTAT+TGG 0.475645 3.3:+70904507 None:intergenic
AAGAATGACAGTGTCGTCTC+AGG 0.487645 3.3:+70904701 None:intergenic
TGAGTGTTTGGTTCTTGTAT+CGG 0.489683 3.3:-70904065 MS.gene75646:CDS
TCTCAAGACTGTTGTTATTG+GGG 0.494985 3.3:-70903996 MS.gene75646:CDS
TATTGCATTGCAAAAGCATA+TGG 0.499781 3.3:-70904113 MS.gene75646:CDS
CACTGTCATTCTTGGGGTCA+CGG 0.505218 3.3:-70904691 MS.gene75646:CDS
ACTCTACATAGCTTCTCATT+CGG 0.506498 3.3:+70904649 None:intergenic
GAAGGAGGCTGTATCGGTTG+TGG 0.514904 3.3:-70903894 MS.gene75646:CDS
GCAGTGATGGAGTCTTGAAA+AGG 0.516098 3.3:-70903967 MS.gene75646:CDS
ATGTAGAGTAGGGCTGTTCT+GGG 0.518539 3.3:-70904635 MS.gene75646:CDS
GTTTGGCTGATGAGCTGAAA+CGG 0.521781 3.3:-70904183 MS.gene75646:CDS
GGCGAAGAAGGAGGCTGTAT+CGG 0.522314 3.3:-70903900 MS.gene75646:CDS
AAAGCATATGGTGGATATGA+TGG 0.523680 3.3:-70904101 MS.gene75646:CDS
GTCATTCTTGGGGTCACGGA+AGG 0.525218 3.3:-70904687 MS.gene75646:CDS
GGAACTGTTGTATCGTTTGG+AGG 0.537669 3.3:-70904449 MS.gene75646:CDS
GAAAATGGAAAAGTATAAGA+AGG 0.542297 3.3:-70904242 MS.gene75646:CDS
TCGTGAGAGGAGGAAAGAAC+AGG 0.542932 3.3:-70904470 MS.gene75646:CDS
CTCCTCTCACGAACAACGTG+GGG 0.546733 3.3:+70904481 None:intergenic
AATGAGAAGCTATGTAGAGT+AGG 0.549536 3.3:-70904646 MS.gene75646:CDS
AAGGCGGAATCAGATAGAAT+CGG 0.553848 3.3:-70904308 MS.gene75646:CDS
TATTGGCAACTTCATAAGGT+GGG 0.553988 3.3:+70904584 None:intergenic
TTTGGCTGATGAGCTGAAAC+GGG 0.555204 3.3:-70904182 MS.gene75646:CDS
CCAGATGAGGCTGTTTCATG+GGG 0.555489 3.3:-70906920 MS.gene75646:CDS
ACAAGGATGACAGAGGTCCT+TGG 0.556458 3.3:-70903721 MS.gene75646:CDS
TGGAGTTGTTCGACATATGG+TGG 0.559762 3.3:-70904536 MS.gene75646:CDS
TCTGGAGCTCGTTCCAGATG+AGG 0.560181 3.3:-70906933 MS.gene75646:CDS
ATGAGAAGCTATGTAGAGTA+GGG 0.561703 3.3:-70904645 MS.gene75646:CDS
CTGATGAGCTGAAACGGGCA+GGG 0.566688 3.3:-70904177 MS.gene75646:CDS
ATCGGCTAGAGGGAGTAGAA+AGG 0.569230 3.3:-70904290 MS.gene75646:CDS
GGATATGATGGATCATAGGC+GGG 0.572337 3.3:-70904089 MS.gene75646:CDS
GAGTAGAAAGGTGAAATTGG+TGG 0.573655 3.3:-70904278 MS.gene75646:CDS
ATCAGATAGAATCGGCTAGA+GGG 0.575206 3.3:-70904300 MS.gene75646:CDS
CAACAAATGTTTGATGCCAG+TGG 0.576414 3.3:+70904724 None:intergenic
ATTTGCAACACCATTATCAT+CGG 0.578456 3.3:+70903685 None:intergenic
ATGAGCGTGAGCATGCGAAA+AGG 0.580807 3.3:-70904327 MS.gene75646:CDS
TAAGGTGGGATTGAATTGGG+TGG 0.598304 3.3:+70904598 None:intergenic
TCCTCCTCTCACGAACAACG+TGG 0.601028 3.3:+70904479 None:intergenic
CCCACGTTGTTCGTGAGAGG+AGG 0.604916 3.3:-70904480 MS.gene75646:CDS
AATGCAATATCCGCAGCTTG+CGG 0.606975 3.3:+70904127 None:intergenic
AGTAGAAAGGTGAAATTGGT+GGG 0.609374 3.3:-70904277 MS.gene75646:CDS
TGCATTGCAAAAGCATATGG+TGG 0.610349 3.3:-70904110 MS.gene75646:CDS
TTCTACACAATAGAAGCCAC+TGG 0.610989 3.3:-70904740 MS.gene75646:intron
GTGGACATATAACCCAGAAG+TGG 0.612100 3.3:-70903834 MS.gene75646:CDS
TTATTGGCAACTTCATAAGG+TGG 0.612373 3.3:+70904583 None:intergenic
CCTCCTCTCACGAACAACGT+GGG 0.620111 3.3:+70904480 None:intergenic
GATGGGGAAGGCGAAGAAGG+AGG 0.621967 3.3:-70903909 MS.gene75646:CDS
AATCAGATAGAATCGGCTAG+AGG 0.623094 3.3:-70904301 MS.gene75646:CDS
ATGTTTGTCGTGTTTGTGGG+AGG 0.623967 3.3:-70904396 MS.gene75646:CDS
AGCGTGAGCATGCGAAAAGG+CGG 0.626856 3.3:-70904324 MS.gene75646:CDS
AGGATGACAGAGGTCCTTGG+TGG 0.631079 3.3:-70903718 MS.gene75646:CDS
GTTAGATAGGCCGCAAGCTG+CGG 0.632475 3.3:-70904137 MS.gene75646:CDS
TCATATTGATGATGACTACA+AGG 0.634259 3.3:-70903738 MS.gene75646:CDS
AGACGACACTGTCATTCTTG+GGG 0.638329 3.3:-70904697 MS.gene75646:CDS
TTATGAAGGAAGCAAAGCTA+CGG 0.640003 3.3:-70904021 MS.gene75646:CDS
TGGATATGATGGATCATAGG+CGG 0.652070 3.3:-70904090 MS.gene75646:CDS
ATATATTGAAAAGATTGGAG+TGG 0.659405 3.3:-70903853 MS.gene75646:CDS
CCACAAACACGACAAACATG+AGG 0.661362 3.3:+70904400 None:intergenic
TCCTCTCACGAACAACGTGG+GGG 0.698129 3.3:+70904482 None:intergenic
TCGGAGTCTAATTTCCACCA+AGG 0.709650 3.3:+70903704 None:intergenic
CAGATGAGGCTGTTTCATGG+GGG 0.715284 3.3:-70906919 MS.gene75646:CDS
GATGACTACAAGGATGACAG+AGG 0.730694 3.3:-70903728 MS.gene75646:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAAAATTTACTTCTAAA+TGG + chr3.3:70904176-70904195 None:intergenic 15.0%
!!! ATAAAAAAGACATAGTTTTA+AGG + chr3.3:70903826-70903845 None:intergenic 15.0%
!!! TTTTTAACTGTTAAATTCAT+TGG + chr3.3:70904423-70904442 None:intergenic 15.0%
!! AACCATAAAATAATCAAACA+AGG + chr3.3:70905839-70905858 None:intergenic 20.0%
!! AGAAAGAACATATAATTGAA+AGG - chr3.3:70905039-70905058 MS.gene75646:intron 20.0%
!! AGATCATAATTAGCTAAATT+TGG + chr3.3:70904768-70904787 None:intergenic 20.0%
!! GATCATAATTAGCTAAATTT+GGG + chr3.3:70904767-70904786 None:intergenic 20.0%
!! TTTAGGCTAAAATCAAATTT+AGG + chr3.3:70904531-70904550 None:intergenic 20.0%
!!! AATACCAATTTTTCTAAACA+TGG + chr3.3:70905753-70905772 None:intergenic 20.0%
!!! TTCTAGCTATTGATAAAAAA+AGG + chr3.3:70905472-70905491 None:intergenic 20.0%
! ACAGTCAAATTAAATGTCAA+TGG + chr3.3:70904114-70904133 None:intergenic 25.0%
! ATATATTGAAAAGATTGGAG+TGG - chr3.3:70906770-70906789 MS.gene75646:intron 25.0%
! ATCTCCATGTTTAGAAAAAT+TGG - chr3.3:70905746-70905765 MS.gene75646:intron 25.0%
! ATGATGAAATCAAATTGCAA+TGG + chr3.3:70904721-70904740 None:intergenic 25.0%
! ATTCTGTAAAGAAAACAAGT+AGG + chr3.3:70903778-70903797 None:intergenic 25.0%
! CTATTGTGTAGAATATTCTA+CGG + chr3.3:70905876-70905895 None:intergenic 25.0%
! TATTTCTTCTATTCGTTTGA+AGG + chr3.3:70905536-70905555 None:intergenic 25.0%
! TCAAACGAATAGAAGAAATA+AGG - chr3.3:70905536-70905555 MS.gene75646:intron 25.0%
! TCGTGATATATTGAAAAGAT+TGG - chr3.3:70906765-70906784 MS.gene75646:intron 25.0%
!! AAACAAGTAGGAAAGTATAT+AGG + chr3.3:70903766-70903785 None:intergenic 25.0%
!! CAATCTCAAAGTATGATTTT+AGG + chr3.3:70904548-70904567 None:intergenic 25.0%
!! GAAAATGGAAAAGTATAAGA+AGG - chr3.3:70906381-70906400 MS.gene75646:intron 25.0%
!!! AAGCTTGGATTTGTTTTATT+TGG - chr3.3:70905312-70905331 MS.gene75646:intron 25.0%
!!! AAGTAAATTTTTAGTCCTGA+AGG - chr3.3:70904181-70904200 MS.gene75646:CDS 25.0%
!!! CTAAAATCATACTTTGAGAT+TGG - chr3.3:70904546-70904565 MS.gene75646:CDS 25.0%
!!! CTTTTTTATTTCACTAAACC+TGG - chr3.3:70903837-70903856 MS.gene75646:CDS 25.0%
!!! GACCTTGTTTGATTATTTTA+TGG - chr3.3:70905834-70905853 MS.gene75646:intron 25.0%
AAAAGTAAAAAGGTTTGGCT+GGG - chr3.3:70903951-70903970 MS.gene75646:CDS 30.0%
AAATTAGACTCCGATGATAA+TGG - chr3.3:70906928-70906947 MS.gene75646:CDS 30.0%
AAGTTCCATACCAAAACATT+TGG + chr3.3:70904006-70904025 None:intergenic 30.0%
AATGGCATATATGAAGGTTT+CGG + chr3.3:70905156-70905175 None:intergenic 30.0%
AATGTATTCTAGTGCATGTT+TGG + chr3.3:70904992-70905011 None:intergenic 30.0%
ACAACTTCATTATGATGTAC+AGG - chr3.3:70904810-70904829 MS.gene75646:intron 30.0%
ATTAAATGTCAATGGCAAAC+TGG + chr3.3:70904106-70904125 None:intergenic 30.0%
ATTTGCAACACCATTATCAT+CGG + chr3.3:70906941-70906960 None:intergenic 30.0%
CATGAATTAAATCGCTTTAC+AGG + chr3.3:70905624-70905643 None:intergenic 30.0%
CGAAACTTCTTCATTGATAA+AGG - chr3.3:70903919-70903938 MS.gene75646:CDS 30.0%
CTGTCAAAAGTAAAAAGGTT+TGG - chr3.3:70903946-70903965 MS.gene75646:CDS 30.0%
GATATAGTACAGCAAAAGTT+TGG + chr3.3:70903804-70903823 None:intergenic 30.0%
GGATAAAAAGAAACACAACT+TGG - chr3.3:70906810-70906829 MS.gene75646:intron 30.0%
TAACTGTTAAATTCATTGGC+TGG + chr3.3:70904419-70904438 None:intergenic 30.0%
TTAGTTGCTTGTAATTCAGT+TGG - chr3.3:70905373-70905392 MS.gene75646:intron 30.0%
! GAATTGAGAGTCATGAATTT+TGG - chr3.3:70904203-70904222 MS.gene75646:CDS 30.0%
! GTTTCTTTTTATCCACTTCT+GGG + chr3.3:70906804-70906823 None:intergenic 30.0%
! TATTGCATTGCAAAAGCATA+TGG - chr3.3:70906510-70906529 MS.gene75646:intron 30.0%
! TGATTTTGTCGATGTTATGA+AGG - chr3.3:70906588-70906607 MS.gene75646:intron 30.0%
! TGTTTCTTTTTATCCACTTC+TGG + chr3.3:70906805-70906824 None:intergenic 30.0%
!! AACTATATTTTTGAACCGTG+TGG - chr3.3:70904244-70904263 MS.gene75646:CDS 30.0%
!! GGTAAAAAATGCTTGTTATG+TGG + chr3.3:70904155-70904174 None:intergenic 30.0%
!! GTCGTTGTAATTTTAATGTG+AGG + chr3.3:70904939-70904958 None:intergenic 30.0%
!! GTTTGCTGTCAAAAGTAAAA+AGG - chr3.3:70903941-70903960 MS.gene75646:CDS 30.0%
!! TCATATTGATGATGACTACA+AGG - chr3.3:70906885-70906904 MS.gene75646:intron 30.0%
!!! GGATTTGTTTTATTTGGTGA+TGG - chr3.3:70905318-70905337 MS.gene75646:intron 30.0%
AATGAGAAGCTATGTAGAGT+AGG - chr3.3:70905977-70905996 MS.gene75646:intron 35.0%
ACTCTACATAGCTTCTCATT+CGG + chr3.3:70905977-70905996 None:intergenic 35.0%
ACTGATTGCTGTATTTCACA+TGG - chr3.3:70904374-70904393 MS.gene75646:CDS 35.0%
AGAATATTCTACGGAACTTG+AGG + chr3.3:70905867-70905886 None:intergenic 35.0%
AGCTTATTGGCAACTTCATA+AGG + chr3.3:70906046-70906065 None:intergenic 35.0%
AGGATCTGCTAAAACTGTTA+AGG - chr3.3:70903735-70903754 MS.gene75646:CDS 35.0%
AGTAGAAAGGTGAAATTGGT+GGG - chr3.3:70906346-70906365 MS.gene75646:intron 35.0%
ATGAAGAAGTTTCGTTCTTG+AGG + chr3.3:70903913-70903932 None:intergenic 35.0%
ATGAGAAGCTATGTAGAGTA+GGG - chr3.3:70905978-70905997 MS.gene75646:intron 35.0%
CAAAACTAAGAGAAACCACA+CGG + chr3.3:70904262-70904281 None:intergenic 35.0%
CAAAAGTAAAAAGGTTTGGC+TGG - chr3.3:70903950-70903969 MS.gene75646:CDS 35.0%
CTGATTGCTGTATTTCACAT+GGG - chr3.3:70904375-70904394 MS.gene75646:CDS 35.0%
GAACGATAATGTGCGAAATA+TGG - chr3.3:70905645-70905664 MS.gene75646:intron 35.0%
GCAACAACGAAAGAATTTCA+CGG + chr3.3:70905231-70905250 None:intergenic 35.0%
GCAGCAAAAATCATCAATCA+AGG + chr3.3:70905416-70905435 None:intergenic 35.0%
GGGTAAGTATGCTATGAAAA+TGG - chr3.3:70906366-70906385 MS.gene75646:intron 35.0%
TATTGGCAACTTCATAAGGT+GGG + chr3.3:70906042-70906061 None:intergenic 35.0%
TCATAAGGTGGGATTGAATT+GGG + chr3.3:70906031-70906050 None:intergenic 35.0%
TGAGAGAATGGCATATATGA+AGG + chr3.3:70905162-70905181 None:intergenic 35.0%
TGCTAGTAAAATGCTAATGC+TGG - chr3.3:70904476-70904495 MS.gene75646:CDS 35.0%
TGTCTCAAGACTGTTGTTAT+TGG - chr3.3:70906625-70906644 MS.gene75646:intron 35.0%
TGTGAAATACAGCAATCAGT+TGG + chr3.3:70904374-70904393 None:intergenic 35.0%
TTATGAAGGAAGCAAAGCTA+CGG - chr3.3:70906602-70906621 MS.gene75646:intron 35.0%
TTATTGGCAACTTCATAAGG+TGG + chr3.3:70906043-70906062 None:intergenic 35.0%
TTCATAAGGTGGGATTGAAT+TGG + chr3.3:70906032-70906051 None:intergenic 35.0%
TTGTATCGTTTGGAGGATAA+GGG - chr3.3:70906181-70906200 MS.gene75646:intron 35.0%
! ATTGCTAAAAGTGTGGCTAT+TGG + chr3.3:70906119-70906138 None:intergenic 35.0%
! GTCTCAAGACTGTTGTTATT+GGG - chr3.3:70906626-70906645 MS.gene75646:intron 35.0%
! TCATCAACTCCAGATGTTTT+AGG + chr3.3:70906847-70906866 None:intergenic 35.0%
! TCTCAAGACTGTTGTTATTG+GGG - chr3.3:70906627-70906646 MS.gene75646:intron 35.0%
!! AAAGCATATGGTGGATATGA+TGG - chr3.3:70906522-70906541 MS.gene75646:intron 35.0%
!! TGAGTGTTTGGTTCTTGTAT+CGG - chr3.3:70906558-70906577 MS.gene75646:intron 35.0%
!! TTCTTGGGAGGATATTTTGA+TGG - chr3.3:70906696-70906715 MS.gene75646:intron 35.0%
!!! CTGTTTTGACTCCTAAAGTT+GGG - chr3.3:70906413-70906432 MS.gene75646:intron 35.0%
!!! GACTGTCTTGTTATTTTGCA+AGG - chr3.3:70904128-70904147 MS.gene75646:CDS 35.0%
!!! TCTTGGGAGGATATTTTGAT+GGG - chr3.3:70906697-70906716 MS.gene75646:intron 35.0%
!!! TGAGTCCAAATGTTTTGGTA+TGG - chr3.3:70903998-70904017 MS.gene75646:CDS 35.0%
!!! TGTGGTTTCTCTTAGTTTTG+AGG - chr3.3:70904262-70904281 MS.gene75646:CDS 35.0%
!!! TTTTGGAGTTGTTCGACATA+TGG - chr3.3:70906084-70906103 MS.gene75646:intron 35.0%
AAGGCGGAATCAGATAGAAT+CGG - chr3.3:70906315-70906334 MS.gene75646:intron 40.0%
AATCAGATAGAATCGGCTAG+AGG - chr3.3:70906322-70906341 MS.gene75646:intron 40.0%
ACAGGAACTGTTGTATCGTT+TGG - chr3.3:70906171-70906190 MS.gene75646:intron 40.0%
AGGGAGTAGAAAGGTGAAAT+TGG - chr3.3:70906342-70906361 MS.gene75646:intron 40.0%
ATCAGATAGAATCGGCTAGA+GGG - chr3.3:70906323-70906342 MS.gene75646:intron 40.0%
CAAAACATTTGGACTCACTG+TGG + chr3.3:70903995-70904014 None:intergenic 40.0%
CAACAAATGTTTGATGCCAG+TGG + chr3.3:70905902-70905921 None:intergenic 40.0%
CTCATGTTTGTCGTGTTTGT+GGG - chr3.3:70906224-70906243 MS.gene75646:intron 40.0%
CTCCCAAGAAAAAGCAGTAT+CGG + chr3.3:70906686-70906705 None:intergenic 40.0%
CTTCGCAACAAGAGATGTAA+GGG + chr3.3:70905295-70905314 None:intergenic 40.0%
GAGTAGAAAGGTGAAATTGG+TGG - chr3.3:70906345-70906364 MS.gene75646:intron 40.0%
GATGCAGTTCCTAAAACATC+TGG - chr3.3:70906835-70906854 MS.gene75646:intron 40.0%
GGGTATTCACGAAATGTTCA+CGG + chr3.3:70905095-70905114 None:intergenic 40.0%
GGGTTCAAACTGTGTTAGAT+AGG - chr3.3:70906473-70906492 MS.gene75646:intron 40.0%
GGTATGGAACTTAAAGACCA+AGG - chr3.3:70904014-70904033 MS.gene75646:CDS 40.0%
GTCGTCTGATCTCAAATCAA+TGG + chr3.3:70904617-70904636 None:intergenic 40.0%
GTTGTATCGTTTGGAGGATA+AGG - chr3.3:70906180-70906199 MS.gene75646:intron 40.0%
TATTCACGAAATGTTCACGG+TGG + chr3.3:70905092-70905111 None:intergenic 40.0%
TCACAGTGACGAAAGGATTT+GGG + chr3.3:70905115-70905134 None:intergenic 40.0%
TCATGACTCTCAATTCCTTC+AGG + chr3.3:70904199-70904218 None:intergenic 40.0%
TCCTAAAGTTGGGTATGGTT+TGG - chr3.3:70906423-70906442 MS.gene75646:intron 40.0%
TCTAGTGCATGTTTGGATTG+TGG + chr3.3:70904985-70905004 None:intergenic 40.0%
TGCAGCTATTCTGAGCTTAT+TGG + chr3.3:70906059-70906078 None:intergenic 40.0%
TGGAACTTAAAGACCAAGGT+CGG - chr3.3:70904018-70904037 MS.gene75646:CDS 40.0%
TTCACAGTGACGAAAGGATT+TGG + chr3.3:70905116-70905135 None:intergenic 40.0%
TTCTACACAATAGAAGCCAC+TGG - chr3.3:70905883-70905902 MS.gene75646:intron 40.0%
TTGACTCCTAAAGTTGGGTA+TGG - chr3.3:70906418-70906437 MS.gene75646:intron 40.0%
! AAGCAGTGTGTTTGAGATCT+TGG - chr3.3:70904076-70904095 MS.gene75646:CDS 40.0%
! AGAATAGCTGCAGCTTCTTT+TGG - chr3.3:70906067-70906086 MS.gene75646:intron 40.0%
! CACAGTGAGTCCAAATGTTT+TGG - chr3.3:70903993-70904012 MS.gene75646:CDS 40.0%
! TGCATTGCAAAAGCATATGG+TGG - chr3.3:70906513-70906532 MS.gene75646:intron 40.0%
! TGTTTGGATTGTGGCGATTT+TGG + chr3.3:70904976-70904995 None:intergenic 40.0%
!! ATTGGGGATTTTAGCAGTGA+TGG - chr3.3:70906643-70906662 MS.gene75646:intron 40.0%
!! TGGATATGATGGATCATAGG+CGG - chr3.3:70906533-70906552 MS.gene75646:intron 40.0%
!! TGGTGGATATGATGGATCAT+AGG - chr3.3:70906530-70906549 MS.gene75646:intron 40.0%
!!! CTTGGGAGGATATTTTGATG+GGG - chr3.3:70906698-70906717 MS.gene75646:intron 40.0%
!!! GCTGTTTTGACTCCTAAAGT+TGG - chr3.3:70906412-70906431 MS.gene75646:intron 40.0%
!!! TGCCGATACTGCTTTTTCTT+GGG - chr3.3:70906681-70906700 MS.gene75646:intron 40.0%
AAGAATGACAGTGTCGTCTC+AGG + chr3.3:70905925-70905944 None:intergenic 45.0%
AATGCAATATCCGCAGCTTG+CGG + chr3.3:70906499-70906518 None:intergenic 45.0%
AATGTTTCAGCAACCAGCAG+AGG + chr3.3:70903888-70903907 None:intergenic 45.0%
ACATCTCTTGTTGCGAAGCT+TGG - chr3.3:70905297-70905316 MS.gene75646:intron 45.0%
ACGAAAGAATTTCACGGCGA+CGG + chr3.3:70905225-70905244 None:intergenic 45.0%
AGACGACACTGTCATTCTTG+GGG - chr3.3:70905926-70905945 MS.gene75646:intron 45.0%
AGGTCGTATTTGTGACTGCA+AGG - chr3.3:70905556-70905575 MS.gene75646:intron 45.0%
AGTGCATGTCACTAGACATG+AGG + chr3.3:70904867-70904886 None:intergenic 45.0%
ATGAAGGTTTCGGTGACAAG+AGG + chr3.3:70905146-70905165 None:intergenic 45.0%
ATGTAGAGTAGGGCTGTTCT+GGG - chr3.3:70905988-70906007 MS.gene75646:intron 45.0%
ATGTTTCAGCAACCAGCAGA+GGG + chr3.3:70903887-70903906 None:intergenic 45.0%
ATGTTTGTCGTGTTTGTGGG+AGG - chr3.3:70906227-70906246 MS.gene75646:intron 45.0%
CCAAAATCAATAAGCGTGCG+TGG - chr3.3:70904636-70904655 MS.gene75646:CDS 45.0%
CCACAAACACGACAAACATG+AGG + chr3.3:70906226-70906245 None:intergenic 45.0%
CCTCATGTTTGTCGTGTTTG+TGG - chr3.3:70906223-70906242 MS.gene75646:intron 45.0%
GAGACGACACTGTCATTCTT+GGG - chr3.3:70905925-70905944 MS.gene75646:intron 45.0%
GATGACTACAAGGATGACAG+AGG - chr3.3:70906895-70906914 MS.gene75646:CDS 45.0%
GCAACAAGAGATGTAAGGGA+AGG + chr3.3:70905291-70905310 None:intergenic 45.0%
GCCAAACCATACCCAACTTT+AGG + chr3.3:70906427-70906446 None:intergenic 45.0%
GCTTCGCAACAAGAGATGTA+AGG + chr3.3:70905296-70905315 None:intergenic 45.0%
GGAACTGTTGTATCGTTTGG+AGG - chr3.3:70906174-70906193 MS.gene75646:intron 45.0%
GTCACTAGACATGAGGTGTA+GGG + chr3.3:70904860-70904879 None:intergenic 45.0%
GTGGACATATAACCCAGAAG+TGG - chr3.3:70906789-70906808 MS.gene75646:intron 45.0%
GTGTGACCTGAGATATGTTC+CGG + chr3.3:70905263-70905282 None:intergenic 45.0%
GTTTCATGGGGGAAAATACG+AGG - chr3.3:70903715-70903734 MS.gene75646:CDS 45.0%
GTTTGGCTGATGAGCTGAAA+CGG - chr3.3:70906440-70906459 MS.gene75646:intron 45.0%
TAAGGTGGGATTGAATTGGG+TGG + chr3.3:70906028-70906047 None:intergenic 45.0%
TATGTAGAGTAGGGCTGTTC+TGG - chr3.3:70905987-70906006 MS.gene75646:intron 45.0%
TCACTAGACATGAGGTGTAG+GGG + chr3.3:70904859-70904878 None:intergenic 45.0%
TCGGAGTCTAATTTCCACCA+AGG + chr3.3:70906922-70906941 None:intergenic 45.0%
TCGTTGCATCACAATGTACC+AGG + chr3.3:70903858-70903877 None:intergenic 45.0%
TGAAGGTGAAGGTGAGAGAA+TGG + chr3.3:70905174-70905193 None:intergenic 45.0%
TGAAGGTTTCGGTGACAAGA+GGG + chr3.3:70905145-70905164 None:intergenic 45.0%
TGAGACGACACTGTCATTCT+TGG - chr3.3:70905924-70905943 MS.gene75646:intron 45.0%
TGGAGTTGTTCGACATATGG+TGG - chr3.3:70906087-70906106 MS.gene75646:intron 45.0%
TGTCACTAGACATGAGGTGT+AGG + chr3.3:70904861-70904880 None:intergenic 45.0%
TTGGGTTTCACAGTGACGAA+AGG + chr3.3:70905122-70905141 None:intergenic 45.0%
TTTGGCTGATGAGCTGAAAC+GGG - chr3.3:70906441-70906460 MS.gene75646:intron 45.0%
! CAGTGTGTTTGAGATCTTGG+TGG - chr3.3:70904079-70904098 MS.gene75646:CDS 45.0%
! GCAGTGATGGAGTCTTGAAA+AGG - chr3.3:70906656-70906675 MS.gene75646:intron 45.0%
! TCCAGATGAGGCTGTTTCAT+GGG - chr3.3:70903702-70903721 MS.gene75646:CDS 45.0%
! TTCCAGATGAGGCTGTTTCA+TGG - chr3.3:70903701-70903720 MS.gene75646:CDS 45.0%
!! CTGTATCGGTTGTGGAAAAC+TGG - chr3.3:70906737-70906756 MS.gene75646:intron 45.0%
!! GGATATGATGGATCATAGGC+GGG - chr3.3:70906534-70906553 MS.gene75646:intron 45.0%
!! TGGCGATTTTGGTAGCATCA+CGG + chr3.3:70904965-70904984 None:intergenic 45.0%
!!! CCACGCACGCTTATTGATTT+TGG + chr3.3:70904639-70904658 None:intergenic 45.0%
!!! CGATACTGCTTTTTCTTGGG+AGG - chr3.3:70906684-70906703 MS.gene75646:intron 45.0%
!!! CTGCCGATACTGCTTTTTCT+TGG - chr3.3:70906680-70906699 MS.gene75646:intron 45.0%
!!! GGAGGATATTTTGATGGGGA+AGG - chr3.3:70906702-70906721 MS.gene75646:intron 45.0%
ACAAGGATGACAGAGGTCCT+TGG - chr3.3:70906902-70906921 MS.gene75646:CDS 50.0%
ACATGAGGTGTAGGGGTTGT+TGG + chr3.3:70904852-70904871 None:intergenic 50.0%
ACGGCAAGAAAGGGATCTCA+CGG + chr3.3:70905206-70905225 None:intergenic 50.0%
ACGGTGGTGAGAAGAGTTCA+TGG + chr3.3:70905076-70905095 None:intergenic 50.0%
ATCGGCTAGAGGGAGTAGAA+AGG - chr3.3:70906333-70906352 MS.gene75646:intron 50.0%
ATGAGCGTGAGCATGCGAAA+AGG - chr3.3:70906296-70906315 MS.gene75646:intron 50.0%
CACTGTCATTCTTGGGGTCA+CGG - chr3.3:70905932-70905951 MS.gene75646:intron 50.0%
GGGGGACATTGCTAAAAGTG+TGG + chr3.3:70906126-70906145 None:intergenic 50.0%
GTATGACATACAGCCGACCT+TGG + chr3.3:70904034-70904053 None:intergenic 50.0%
GTTTCGGTGACAAGAGGGTT+GGG + chr3.3:70905140-70905159 None:intergenic 50.0%
TCGTGAGAGGAGGAAAGAAC+AGG - chr3.3:70906153-70906172 MS.gene75646:intron 50.0%
TTGGGGTCACGGAAGGATTT+CGG - chr3.3:70905943-70905962 MS.gene75646:intron 50.0%
TTTGATGGGGAAGGCGAAGA+AGG - chr3.3:70906711-70906730 MS.gene75646:intron 50.0%
! CAGATGAGGCTGTTTCATGG+GGG - chr3.3:70903704-70903723 MS.gene75646:CDS 50.0%
! CCAGATGAGGCTGTTTCATG+GGG - chr3.3:70903703-70903722 MS.gene75646:CDS 50.0%
!! TCATAGGCGGGTTGAGTGTT+TGG - chr3.3:70906546-70906565 MS.gene75646:intron 50.0%
AGCGTGAGCATGCGAAAAGG+CGG - chr3.3:70906299-70906318 MS.gene75646:intron 55.0%
AGGATGACAGAGGTCCTTGG+TGG - chr3.3:70906905-70906924 MS.gene75646:CDS 55.0%
CAACGATAGCTTCCCTCTGC+TGG - chr3.3:70903872-70903891 MS.gene75646:CDS 55.0%
CCCCATGAAACAGCCTCATC+TGG + chr3.3:70903706-70903725 None:intergenic 55.0%
CCTCCTCTCACGAACAACGT+GGG + chr3.3:70906146-70906165 None:intergenic 55.0%
CTCCTCTCACGAACAACGTG+GGG + chr3.3:70906145-70906164 None:intergenic 55.0%
CTGATGAGCTGAAACGGGCA+GGG - chr3.3:70906446-70906465 MS.gene75646:intron 55.0%
GCAAGAAAGGGATCTCACGG+CGG + chr3.3:70905203-70905222 None:intergenic 55.0%
GGCGAAGAAGGAGGCTGTAT+CGG - chr3.3:70906723-70906742 MS.gene75646:intron 55.0%
GGCGGAGAGAATGAAGGTGA+AGG + chr3.3:70905185-70905204 None:intergenic 55.0%
GGTTTCGGTGACAAGAGGGT+TGG + chr3.3:70905141-70905160 None:intergenic 55.0%
GTCATTCTTGGGGTCACGGA+AGG - chr3.3:70905936-70905955 MS.gene75646:intron 55.0%
GTTAGATAGGCCGCAAGCTG+CGG - chr3.3:70906486-70906505 MS.gene75646:intron 55.0%
TCCTCCTCTCACGAACAACG+TGG + chr3.3:70906147-70906166 None:intergenic 55.0%
TCCTCTCACGAACAACGTGG+GGG + chr3.3:70906144-70906163 None:intergenic 55.0%
TCTCACGGCGGAGAGAATGA+AGG + chr3.3:70905191-70905210 None:intergenic 55.0%
TTCACGGCGACGGCAAGAAA+GGG + chr3.3:70905215-70905234 None:intergenic 55.0%
TTGGACTCACTGTGGAGCTG+CGG + chr3.3:70903987-70904006 None:intergenic 55.0%
TTTCACGGCGACGGCAAGAA+AGG + chr3.3:70905216-70905235 None:intergenic 55.0%
! AGCTGAAACGGGCAGGGTTT+TGG - chr3.3:70906452-70906471 MS.gene75646:intron 55.0%
! GCTGAAACGGGCAGGGTTTT+GGG - chr3.3:70906453-70906472 MS.gene75646:intron 55.0%
! TCTGGAGCTCGTTCCAGATG+AGG - chr3.3:70903690-70903709 MS.gene75646:CDS 55.0%
!! GAAGGAGGCTGTATCGGTTG+TGG - chr3.3:70906729-70906748 MS.gene75646:intron 55.0%
CCCACGTTGTTCGTGAGAGG+AGG - chr3.3:70906143-70906162 MS.gene75646:intron 60.0%
CGCACGCCGGAACATATCTC+AGG - chr3.3:70905254-70905273 MS.gene75646:intron 60.0%
GATGGGGAAGGCGAAGAAGG+AGG - chr3.3:70906714-70906733 MS.gene75646:intron 60.0%
GCTGATGAGCTGAAACGGGC+AGG - chr3.3:70906445-70906464 MS.gene75646:intron 60.0%
TCCCCCACGTTGTTCGTGAG+AGG - chr3.3:70906140-70906159 MS.gene75646:intron 60.0%
TCGTTGTTGCTGTCGCACGC+CGG - chr3.3:70905241-70905260 MS.gene75646:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 70903679 70906966 70903679 ID=MS.gene75646
chr3.3 mRNA 70903679 70906966 70903679 ID=MS.gene75646.t1;Parent=MS.gene75646
chr3.3 exon 70906889 70906966 70906889 ID=MS.gene75646.t1.exon1;Parent=MS.gene75646.t1
chr3.3 CDS 70906889 70906966 70906889 ID=cds.MS.gene75646.t1;Parent=MS.gene75646.t1
chr3.3 exon 70903679 70904749 70903679 ID=MS.gene75646.t1.exon2;Parent=MS.gene75646.t1
chr3.3 CDS 70903679 70904749 70903679 ID=cds.MS.gene75646.t1;Parent=MS.gene75646.t1
Gene Sequence

>MS.gene75646

ATGGAAGTGATTCTGGAGCTCGTTCCAGATGAGGCTGTTTCATGGGGGAAAATACGAGGATCTGCTAAAACTGTTAAGGTACATCCTATATACTTTCCTACTTGTTTTCTTTACAGAATACTCCAAACTTTTGCTGTACTATATCCTTAAAACTATGTCTTTTTTATTTCACTAAACCTGGTACATTGTGATGCAACGATAGCTTCCCTCTGCTGGTTGCTGAAACATTTGCCTCAAGAACGAAACTTCTTCATTGATAAAGGTTTGCTGTCAAAAGTAAAAAGGTTTGGCTGGGAAGTGTTTTACCGCAGCTCCACAGTGAGTCCAAATGTTTTGGTATGGAACTTAAAGACCAAGGTCGGCTGTATGTCATACTTGAGATCAAAGTTCATTTGCAAAGCAGTGTGTTTGAGATCTTGGTGGACCAGTTTGCCATTGACATTTAATTTGACTGTCTTGTTATTTTGCAAGGTCCACATAACAAGCATTTTTTACCATTTAGAAGTAAATTTTTAGTCCTGAAGGAATTGAGAGTCATGAATTTTGGATGTAATTATGCAATGCTAACTATATTTTTGAACCGTGTGGTTTCTCTTAGTTTTGAGGTGTTTGAAAATTGTAATCTTCTAGAGCAAATAAGACTAGAAAAGTTTATCAACTATTACTGATCAGTTGTAGTATTTCAATATTTTCCAACTGATTGCTGTATTTCACATGGGAGAAAAAGAATGATTTTACCAGCCAATGAATTTAACAGTTAAAAAGATATAAACAATACTGAAAAGAGAAACACTAGCTGCTAGTAAAATGCTAATGCTGGCATTGACAAACAAGATATACTAGCTTTCACCTAAATTTGATTTTAGCCTAAAATCATACTTTGAGATTGGTCAGCTCACATTACGTCTTCATCAAATCATTTTAAATAATTTTCACCATTGATTTGAGATCAGACGACCAAAATCAATAAGCGTGCGTGGAATCAAATTACTCGACAATCTAATTTCTGAGCAATTTTGATGTTTAAGACTATACAATGCCATTGCAATTTGATTTCATCATAGTAAAACATTGCAAGTTCATATCCCAAATTTAGCTAATTATGATCTCGTTTCATAAAGTTTGTGAGAAACAACTTCATTATGATGTACAGGAACTGATAATATAACTCCAACAACCCCTACACCTCATGTCTAGTGACATGCACTTCATGTTTAGATACGCGACGATTAGTAAGATCACGCGATTTTGTTTAAACCTCACATTAAAATTACAACGACACACCGTGATGCTACCAAAATCGCCACAATCCAAACATGCACTAGAATACATTATAGCAGCACACATACGCTAAGAAATAAGAAAGAACATATAATTGAAAGGCAACTTTTCTACCATGAACTCTTCTCACCACCGTGAACATTTCGTGAATACCCAAATCCTTTCGTCACTGTGAAACCCAACCCTCTTGTCACCGAAACCTTCATATATGCCATTCTCTCACCTTCACCTTCATTCTCTCCGCCGTGAGATCCCTTTCTTGCCGTCGCCGTGAAATTCTTTCGTTGTTGCTGTCGCACGCCGGAACATATCTCAGGTCACACTCTCTCCTTCCCTTACATCTCTTGTTGCGAAGCTTGGATTTGTTTTATTTGGTGATGGAACTGTACAAATTTTGAATTAATAAGTGTTAGTTAGTTGCTTGTAATTCAGTTGGATTGTGTTTTAGCAAATCCTTGATTGATGATTTTTGCTGCATCTTGTTTGCTATAAACAAGCTACTTAGCAAACCTTTTTTTATCAATAGCTAGAATAGTAATTCGTTTCATTTTGCTTAATTAACTTTGAATTATACCTTCAAACGAATAGAAGAAATAAGGTCGTATTTGTGACTGCAAGGTGATCGACAATATGATTTAGACGTAAAGACTTGAGATTTGATCCTGTAAAGCGATTTAATTCATGAGAACGATAATGTGCGAAATATGGAGCATTCAGTAATCTAACGTCATTTATGTGTGTGACTGCAAGTGACTTCGTCAAAGAGTTAACTTCAATCAAGCTCTTATCTCCATGTTTAGAAAAATTGGTATTCTGTATTCTTCATTAATCTGTCTTTATTTAGTAAAACTTGATTGAATTCATTTGTTTCTTCGACCTTGTTTGATTATTTTATGGTTTCAATCCTCAAGTTCCGTAGAATATTCTACACAATAGAAGCCACTGGCATCAAACATTTGTTGCCTGAGACGACACTGTCATTCTTGGGGTCACGGAAGGATTTCGGATAAAAATCCGAATGAGAAGCTATGTAGAGTAGGGCTGTTCTGGGACTTAGACAACAAACCACCCAATTCAATCCCACCTTATGAAGTTGCCAATAAGCTCAGAATAGCTGCAGCTTCTTTTGGAGTTGTTCGACATATGGTGGCTTATGCCAATAGCCACACTTTTAGCAATGTCCCCCACGTTGTTCGTGAGAGGAGGAAAGAACAGGAACTGTTGTATCGTTTGGAGGATAAGGGTGTGATTAAGCGTAATGAGCCTCATGTTTGTCGTGTTTGTGGGAGGAAATTTTACACGAATGAAAAGCTTGTTAATCATTTCAAGCAATTGCATGAGCGTGAGCATGCGAAAAGGCGGAATCAGATAGAATCGGCTAGAGGGAGTAGAAAGGTGAAATTGGTGGGTAAGTATGCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTGTTTTGACTCCTAAAGTTGGGTATGGTTTGGCTGATGAGCTGAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTAGATAGGCCGCAAGCTGCGGATATTGCATTGCAAAAGCATATGGTGGATATGATGGATCATAGGCGGGTTGAGTGTTTGGTTCTTGTATCGGATGATTCTGATTTTGTCGATGTTATGAAGGAAGCAAAGCTACGGTGTCTCAAGACTGTTGTTATTGGGGATTTTAGCAGTGATGGAGTCTTGAAAAGGACTGCCGATACTGCTTTTTCTTGGGAGGATATTTTGATGGGGAAGGCGAAGAAGGAGGCTGTATCGGTTGTGGAAAACTGGAAAGATCGTGATATATTGAAAAGATTGGAGTGGACATATAACCCAGAAGTGGATAAAAAGAAACACAACTTGGATGATGCAGTTCCTAAAACATCTGGAGTTGATGATATTGAAGATATTTGTGATCATATTGATGATGACTACAAGGATGACAGAGGTCCTTGGTGGAAATTAGACTCCGATGATAATGGTGTTGCAAATCGATAA

Protein sequence

>MS.gene75646.t1

MEVILELVPDEAVSWGKIRGSAKTVKKPLASNICCLRRHCHSWGHGRISDKNPNEKLCRVGLFWDLDNKPPNSIPPYEVANKLRIAAASFGVVRHMVAYANSHTFSNVPHVVRERRKEQELLYRLEDKGVIKRNEPHVCRVCGRKFYTNEKLVNHFKQLHEREHAKRRNQIESARGSRKVKLVGKYAMKMEKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDRPQAADIALQKHMVDMMDHRRVECLVLVSDDSDFVDVMKEAKLRCLKTVVIGDFSSDGVLKRTADTAFSWEDILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKHNLDDAVPKTSGVDDIEDICDHIDDDYKDDRGPWWKLDSDDNGVANR