Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75691.t1 | XP_003601649.1 | 99.1 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 6.00E-176 | 626.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75691.t1 | Q9LIR9 | 73.6 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 1.2e-124 | 447.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75691.t1 | G7JA72 | 99.1 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 4.3e-176 | 626.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002040 | MS.gene75691 | PPI |
| MS.gene75691 | MS.gene00614 | PPI |
| MS.gene52088 | MS.gene75691 | PPI |
| MS.gene057722 | MS.gene75691 | PPI |
| MS.gene75691 | MS.gene072062 | PPI |
| MS.gene75691 | MS.gene047204 | PPI |
| MS.gene90964 | MS.gene75691 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75691.t1 | MTR_3g083960 | 99.080 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 0.0 | 660 |
| MS.gene75691.t1 | MTR_8g081650 | 78.882 | 322 | 68 | 0 | 1 | 322 | 1 | 322 | 0.0 | 513 |
| MS.gene75691.t1 | MTR_2g006070 | 70.234 | 299 | 89 | 0 | 2 | 300 | 12 | 310 | 2.04e-152 | 431 |
| MS.gene75691.t1 | MTR_5g090020 | 58.383 | 334 | 130 | 2 | 1 | 325 | 1 | 334 | 2.80e-133 | 383 |
| MS.gene75691.t1 | MTR_8g095060 | 58.466 | 313 | 128 | 2 | 3 | 315 | 1 | 311 | 2.97e-133 | 383 |
| MS.gene75691.t1 | MTR_4g074050 | 57.792 | 308 | 129 | 1 | 1 | 308 | 1 | 307 | 6.55e-133 | 381 |
| MS.gene75691.t1 | MTR_3g097220 | 55.224 | 335 | 138 | 2 | 4 | 326 | 3 | 337 | 1.55e-131 | 378 |
| MS.gene75691.t1 | MTR_3g097220 | 56.832 | 322 | 137 | 2 | 4 | 325 | 3 | 322 | 3.26e-131 | 377 |
| MS.gene75691.t1 | MTR_2g006070 | 69.099 | 233 | 72 | 0 | 2 | 234 | 12 | 244 | 2.60e-109 | 318 |
| MS.gene75691.t1 | MTR_5g090020 | 56.777 | 273 | 110 | 1 | 61 | 325 | 17 | 289 | 2.60e-102 | 303 |
| MS.gene75691.t1 | MTR_2g006070 | 70.745 | 188 | 55 | 0 | 2 | 189 | 12 | 199 | 4.79e-87 | 260 |
| MS.gene75691.t1 | MTR_3g097220 | 52.423 | 227 | 106 | 2 | 99 | 325 | 1 | 225 | 8.87e-82 | 248 |
| MS.gene75691.t1 | MTR_6g033100 | 20.548 | 292 | 216 | 2 | 50 | 325 | 52 | 343 | 1.01e-13 | 72.0 |
| MS.gene75691.t1 | MTR_5g049870 | 45.455 | 77 | 30 | 2 | 240 | 308 | 166 | 238 | 1.19e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75691.t1 | AT1G71900 | 71.380 | 297 | 85 | 0 | 2 | 298 | 14 | 310 | 3.80e-161 | 453 |
| MS.gene75691.t1 | AT1G71900 | 71.380 | 297 | 85 | 0 | 2 | 298 | 14 | 310 | 3.70e-160 | 451 |
| MS.gene75691.t1 | AT1G34470 | 70.370 | 297 | 88 | 0 | 2 | 298 | 14 | 310 | 8.68e-155 | 438 |
| MS.gene75691.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene75691.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene75691.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene75691.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene75691.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene75691.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene75691.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene75691.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene75691.t1 | AT4G09640 | 66.049 | 324 | 109 | 1 | 2 | 325 | 14 | 336 | 8.06e-145 | 414 |
| MS.gene75691.t1 | AT2G21120 | 55.385 | 325 | 139 | 2 | 3 | 326 | 1 | 320 | 2.75e-132 | 380 |
| MS.gene75691.t1 | AT4G38730 | 55.590 | 322 | 137 | 1 | 5 | 326 | 3 | 318 | 3.13e-132 | 379 |
| MS.gene75691.t1 | AT4G13800 | 74.144 | 263 | 68 | 0 | 3 | 265 | 4 | 266 | 1.78e-128 | 368 |
| MS.gene75691.t1 | AT4G13800 | 74.144 | 263 | 68 | 0 | 3 | 265 | 4 | 266 | 1.78e-128 | 368 |
| MS.gene75691.t1 | AT3G23870 | 70.925 | 227 | 66 | 0 | 87 | 313 | 8 | 234 | 1.65e-111 | 324 |
| MS.gene75691.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene75691.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene75691.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene75691.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene75691.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
| MS.gene75691.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
| MS.gene75691.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
| MS.gene75691.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
Find 69 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCAGCATAATAATGTTTA+AGG | 0.148866 | 3.3:-70436414 | MS.gene75691:intron |
| CCTTCACAAAACTAAGGATA+TGG | 0.215788 | 3.3:-70436017 | MS.gene75691:CDS |
| ATATCCTCCGACAACGTTAT+TGG | 0.275140 | 3.3:-70438114 | MS.gene75691:CDS |
| TGCTCACAAGCTTCAAATTT+CGG | 0.287897 | 3.3:+70435919 | None:intergenic |
| TGCCATCCTTGTAACTCCTT+TGG | 0.293323 | 3.3:-70437380 | MS.gene75691:CDS |
| AAAGAGAGATTGCATGTCTT+TGG | 0.311793 | 3.3:-70437227 | MS.gene75691:CDS |
| GCCATCCTTGTAACTCCTTT+GGG | 0.313908 | 3.3:-70437379 | MS.gene75691:CDS |
| CTTCAAATTTCGGATCTATC+TGG | 0.323795 | 3.3:+70435929 | None:intergenic |
| TATTGTATACTCTTGCTTGA+TGG | 0.331593 | 3.3:-70436937 | MS.gene75691:CDS |
| CAACGTTATTGGTCTTTGTT+TGG | 0.334057 | 3.3:-70438103 | MS.gene75691:CDS |
| CATTATTATGCTGGCGATGA+TGG | 0.391168 | 3.3:+70436421 | None:intergenic |
| TTCTCTCACGGGCTCAATTA+CGG | 0.396382 | 3.3:-70436835 | MS.gene75691:intron |
| TTCATTCTGTCAAGGAAGTA+TGG | 0.396932 | 3.3:-70437133 | MS.gene75691:CDS |
| TTGCATGTCTTTGGCGTGCT+TGG | 0.400448 | 3.3:-70437218 | MS.gene75691:CDS |
| GGTGTCTTAGCAGTATTGTT+AGG | 0.405653 | 3.3:+70435950 | None:intergenic |
| GGATGTGCTCTCTGTGTGGT+GGG | 0.414278 | 3.3:-70437197 | MS.gene75691:CDS |
| ACCTGCTCTATTCCCATTAG+TGG | 0.423488 | 3.3:+70438014 | None:intergenic |
| TACCTTAAACATTATTATGC+TGG | 0.433334 | 3.3:+70436412 | None:intergenic |
| ACCCATCTGGTTGTTTATGT+TGG | 0.437188 | 3.3:-70436864 | MS.gene75691:CDS |
| GCTTTGAAACTTTCATTTGA+AGG | 0.443933 | 3.3:-70436682 | MS.gene75691:CDS |
| CTTCACAAAACTAAGGATAT+GGG | 0.475464 | 3.3:-70436016 | MS.gene75691:CDS |
| TTCTTTACATTAGTTGTGAT+AGG | 0.477243 | 3.3:-70436628 | MS.gene75691:CDS |
| CTCTTGCTTGATGGTGGCGC+TGG | 0.486099 | 3.3:-70436928 | MS.gene75691:CDS |
| TCAAGTAGTTGATTTGCAAA+AGG | 0.495628 | 3.3:+70436599 | None:intergenic |
| TGTTGGAATATGTTCTCTCA+CGG | 0.496357 | 3.3:-70436847 | MS.gene75691:CDS |
| TGATATCACATTAGTGTTGA+AGG | 0.498124 | 3.3:+70436475 | None:intergenic |
| TATGAACCACGGTGGTGGGC+TGG | 0.499044 | 3.3:-70437868 | MS.gene75691:CDS |
| TGGATGTGCTCTCTGTGTGG+TGG | 0.507876 | 3.3:-70437198 | MS.gene75691:CDS |
| ATTTGTATGAACCACGGTGG+TGG | 0.514111 | 3.3:-70437873 | MS.gene75691:CDS |
| CTTTGAAACTTTCATTTGAA+GGG | 0.519723 | 3.3:-70436681 | MS.gene75691:CDS |
| ATTCCTCCTTCACAAAACTA+AGG | 0.523907 | 3.3:-70436023 | MS.gene75691:CDS |
| GCCACTAATGGGAATAGAGC+AGG | 0.531481 | 3.3:-70438015 | MS.gene75691:intron |
| GTAAACATGACATAGTAAAC+CGG | 0.531823 | 3.3:+70436452 | None:intergenic |
| GAGTTATGGACAGACCCATC+TGG | 0.542858 | 3.3:-70436877 | MS.gene75691:CDS |
| AAAGGAGTTACAAGGATGGC+AGG | 0.547456 | 3.3:+70437382 | None:intergenic |
| TGGCAACTTGCTACAGAACC+AGG | 0.550915 | 3.3:-70437113 | MS.gene75691:intron |
| ACAAAGACCAATAACGTTGT+CGG | 0.553789 | 3.3:+70438107 | None:intergenic |
| GAAGAAAGAGAGATTTCTGC+GGG | 0.557974 | 3.3:+70435986 | None:intergenic |
| CAGATTGTGACGGAGTTGTG+TGG | 0.559234 | 3.3:-70436070 | MS.gene75691:CDS |
| TGTATACTCTTGCTTGATGG+TGG | 0.561771 | 3.3:-70436934 | MS.gene75691:CDS |
| GTTGGAATATGTTCTCTCAC+GGG | 0.563829 | 3.3:-70436846 | MS.gene75691:CDS |
| TTCCAACATAAACAACCAGA+TGG | 0.564436 | 3.3:+70436862 | None:intergenic |
| GTTATGTGTGTCAAAGCAGT+AGG | 0.569363 | 3.3:-70436709 | MS.gene75691:CDS |
| AAGCTCCCAAAGGAGTTACA+AGG | 0.569548 | 3.3:+70437374 | None:intergenic |
| GATGTGCTCTCTGTGTGGTG+GGG | 0.576392 | 3.3:-70437196 | MS.gene75691:CDS |
| CAACACTAATGTGATATCAC+CGG | 0.577689 | 3.3:-70436471 | MS.gene75691:CDS |
| AATTTATTTACTTTGAGACA+TGG | 0.581957 | 3.3:-70436651 | MS.gene75691:CDS |
| TCTTAGCAGTATTGTTAGGA+CGG | 0.583449 | 3.3:+70435954 | None:intergenic |
| TGAATTTGATCAGCCACAGG+AGG | 0.600352 | 3.3:-70437904 | MS.gene75691:intron |
| TTTGTATGAACCACGGTGGT+GGG | 0.606218 | 3.3:-70437872 | MS.gene75691:CDS |
| AGATTGTGACGGAGTTGTGT+GGG | 0.607230 | 3.3:-70436069 | MS.gene75691:CDS |
| TTTCTTCACAGTGATTGTTG+GGG | 0.624149 | 3.3:-70437437 | MS.gene75691:intron |
| GAATTTGATCAGCCACAGGA+GGG | 0.627579 | 3.3:-70437903 | MS.gene75691:intron |
| GCAAATCAACTACTTGAACA+AGG | 0.627635 | 3.3:-70436593 | MS.gene75691:intron |
| GAGAGTCATTCATTCTGTCA+AGG | 0.628128 | 3.3:-70437141 | MS.gene75691:CDS |
| TCCAACATAAACAACCAGAT+GGG | 0.633993 | 3.3:+70436863 | None:intergenic |
| GCTGGCGATGATGGTAAATG+AGG | 0.637214 | 3.3:+70436430 | None:intergenic |
| TGAAGAAAGAGAGATTTCTG+CGG | 0.649523 | 3.3:+70435985 | None:intergenic |
| GCAGTATTGTTAGGACGGTG+TGG | 0.650836 | 3.3:+70435959 | None:intergenic |
| CAAATATGAATGCCCTCCTG+TGG | 0.653211 | 3.3:+70437891 | None:intergenic |
| ATTCATATTTGTATGAACCA+CGG | 0.657686 | 3.3:-70437879 | MS.gene75691:CDS |
| TCCCAAAGGAGTTACAAGGA+TGG | 0.664654 | 3.3:+70437378 | None:intergenic |
| GCTTGGATGTGCTCTCTGTG+TGG | 0.668530 | 3.3:-70437201 | MS.gene75691:CDS |
| ATGATGCTTAAAGCTCCCAA+AGG | 0.673384 | 3.3:+70437364 | None:intergenic |
| AAGACCAATAACGTTGTCGG+AGG | 0.673692 | 3.3:+70438110 | None:intergenic |
| GAATGAATGACTCTCTCATG+TGG | 0.682284 | 3.3:+70437149 | None:intergenic |
| GTCATTCCAGCCCACCACCG+TGG | 0.686381 | 3.3:+70437862 | None:intergenic |
| AGATGCGTCTCAGATTGTGA+CGG | 0.697608 | 3.3:-70436080 | MS.gene75691:CDS |
| CATATTTGTATGAACCACGG+TGG | 0.737806 | 3.3:-70437876 | MS.gene75691:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCTTCATAATTAAAAAAAT+GGG | - | chr3.3:70436000-70436019 | MS.gene75691:CDS | 15.0% |
| !! | TAGCTTCATAATTAAAAAAA+TGG | - | chr3.3:70435999-70436018 | MS.gene75691:CDS | 15.0% |
| !! | TGTCTTTATAACTATTATTT+AGG | + | chr3.3:70437904-70437923 | None:intergenic | 15.0% |
| !!! | ATATTATAAATAACTTGTGA+TGG | + | chr3.3:70437697-70437716 | None:intergenic | 15.0% |
| !!! | ATTATTTAGGTTTCAAAAAA+AGG | + | chr3.3:70437891-70437910 | None:intergenic | 15.0% |
| !! | AAATAAATAAACCATCAAGA+CGG | + | chr3.3:70437928-70437947 | None:intergenic | 20.0% |
| !! | CTTAAAAGTTAAAACTCATT+CGG | - | chr3.3:70436399-70436418 | MS.gene75691:intron | 20.0% |
| !!! | AAAATAGTATAAGTTGAACA+TGG | + | chr3.3:70436521-70436540 | None:intergenic | 20.0% |
| !!! | AATTTATTTACTTTGAGACA+TGG | - | chr3.3:70437400-70437419 | MS.gene75691:CDS | 20.0% |
| !!! | AGATTTTTTTTTTCTTCATC+TGG | - | chr3.3:70436061-70436080 | MS.gene75691:CDS | 20.0% |
| !!! | AGTTGTTATGTTAGTTTATA+GGG | - | chr3.3:70436356-70436375 | MS.gene75691:intron | 20.0% |
| !!! | GATTTTTTTTTTCTTCATCT+GGG | - | chr3.3:70436062-70436081 | MS.gene75691:CDS | 20.0% |
| !!! | GTATGTTTCTTATTTAATCT+GGG | - | chr3.3:70437528-70437547 | MS.gene75691:intron | 20.0% |
| !!! | TAGTTGTTATGTTAGTTTAT+AGG | - | chr3.3:70436355-70436374 | MS.gene75691:intron | 20.0% |
| !!! | TCTTGATGGTTTATTTATTT+TGG | - | chr3.3:70437928-70437947 | MS.gene75691:intron | 20.0% |
| !!! | TGTATGTTTCTTATTTAATC+TGG | - | chr3.3:70437527-70437546 | MS.gene75691:intron | 20.0% |
| !!! | TTAGTAAAGGTTTTAAATCA+TGG | - | chr3.3:70437754-70437773 | MS.gene75691:intron | 20.0% |
| ! | AACCTATATATGCAAAAACT+AGG | + | chr3.3:70437325-70437344 | None:intergenic | 25.0% |
| ! | AAGAAACATACAAAAGAACA+TGG | + | chr3.3:70437519-70437538 | None:intergenic | 25.0% |
| ! | ATACGTTATTATATCTCTCT+AGG | - | chr3.3:70436474-70436493 | MS.gene75691:CDS | 25.0% |
| ! | ATTCATATTTGTATGAACCA+CGG | - | chr3.3:70436172-70436191 | MS.gene75691:intron | 25.0% |
| ! | TACCTTAAACATTATTATGC+TGG | + | chr3.3:70437642-70437661 | None:intergenic | 25.0% |
| ! | TTCTTTACATTAGTTGTGAT+AGG | - | chr3.3:70437423-70437442 | MS.gene75691:CDS | 25.0% |
| !!! | AAGGTTTTAAATCATGGTAA+CGG | - | chr3.3:70437760-70437779 | MS.gene75691:intron | 25.0% |
| !!! | ATCCTAGTTTTTGCATATAT+AGG | - | chr3.3:70437320-70437339 | MS.gene75691:intron | 25.0% |
| !!! | ATGAGTTTTAACTTTTAAGC+AGG | + | chr3.3:70436398-70436417 | None:intergenic | 25.0% |
| !!! | CTCAAAAGTATCATGAATTA+AGG | - | chr3.3:70437267-70437286 | MS.gene75691:intron | 25.0% |
| !!! | CTTTGAAACTTTCATTTGAA+GGG | - | chr3.3:70437370-70437389 | MS.gene75691:CDS | 25.0% |
| !!! | GTACTTTTTGAAGCTTTAAT+TGG | - | chr3.3:70436960-70436979 | MS.gene75691:intron | 25.0% |
| AAGTTATGATGTCTCTACAA+CGG | + | chr3.3:70437852-70437871 | None:intergenic | 30.0% | |
| AGTTTAAGTGAGATGCATTA+TGG | - | chr3.3:70436987-70437006 | MS.gene75691:intron | 30.0% | |
| CTTCACAAAACTAAGGATAT+GGG | - | chr3.3:70438035-70438054 | MS.gene75691:CDS | 30.0% | |
| GTAAACATGACATAGTAAAC+CGG | + | chr3.3:70437602-70437621 | None:intergenic | 30.0% | |
| TATTGTATACTCTTGCTTGA+TGG | - | chr3.3:70437114-70437133 | MS.gene75691:CDS | 30.0% | |
| TCTCTCATGAATGAATGAAT+AGG | - | chr3.3:70437088-70437107 | MS.gene75691:intron | 30.0% | |
| TTAAAAAAGCTGCCACTAAT+GGG | - | chr3.3:70436025-70436044 | MS.gene75691:CDS | 30.0% | |
| TTTGCAATTGGGTTTAGTAA+AGG | - | chr3.3:70437741-70437760 | MS.gene75691:intron | 30.0% | |
| TTTGTTGGCAATTTGCAATT+GGG | - | chr3.3:70437730-70437749 | MS.gene75691:intron | 30.0% | |
| ! | AGGATCTTTAAGTTTGTAGA+AGG | + | chr3.3:70437305-70437324 | None:intergenic | 30.0% |
| ! | GGTTTGTGACAATTTTATCT+GGG | - | chr3.3:70438003-70438022 | MS.gene75691:intron | 30.0% |
| ! | GTGAGTGATTTTCTATCTTA+TGG | - | chr3.3:70436217-70436236 | MS.gene75691:intron | 30.0% |
| ! | TAACTTTTAAGCAGGAAGTT+CGG | + | chr3.3:70436390-70436409 | None:intergenic | 30.0% |
| ! | TGATATCACATTAGTGTTGA+AGG | + | chr3.3:70437579-70437598 | None:intergenic | 30.0% |
| ! | TTTAATCTGGGATACTATTG+TGG | - | chr3.3:70437540-70437559 | MS.gene75691:intron | 30.0% |
| ! | TTTTCTTCACAGTGATTGTT+GGG | - | chr3.3:70436613-70436632 | MS.gene75691:CDS | 30.0% |
| !! | GCTTTGAAACTTTCATTTGA+AGG | - | chr3.3:70437369-70437388 | MS.gene75691:CDS | 30.0% |
| !! | GTTCTAAAGGAATTCATTTC+TGG | - | chr3.3:70437018-70437037 | MS.gene75691:intron | 30.0% |
| !! | TCAAGTAGTTGATTTGCAAA+AGG | + | chr3.3:70437455-70437474 | None:intergenic | 30.0% |
| !! | TTAAAGCTTCAAAAAGTACC+TGG | + | chr3.3:70436959-70436978 | None:intergenic | 30.0% |
| !!! | TATGGTCTTTTTGGTTCTAA+AGG | - | chr3.3:70437005-70437024 | MS.gene75691:intron | 30.0% |
| !!! | TCCTTATTTTCGTTTTTGCA+CGG | - | chr3.3:70437152-70437171 | MS.gene75691:CDS | 30.0% |
| AAAGAGAGATTGCATGTCTT+TGG | - | chr3.3:70436824-70436843 | MS.gene75691:intron | 35.0% | |
| ACAAAGACCAATAACGTTGT+CGG | + | chr3.3:70435947-70435966 | None:intergenic | 35.0% | |
| ACATCATAACTTTGATGTCG+CGG | - | chr3.3:70437860-70437879 | MS.gene75691:CDS | 35.0% | |
| ATTCCTCCTTCACAAAACTA+AGG | - | chr3.3:70438028-70438047 | MS.gene75691:CDS | 35.0% | |
| CAACAATCACTGTGAAGAAA+AGG | + | chr3.3:70436614-70436633 | None:intergenic | 35.0% | |
| CAACACTAATGTGATATCAC+CGG | - | chr3.3:70437580-70437599 | MS.gene75691:intron | 35.0% | |
| CACATGCAATTGAACAAGAT+TGG | + | chr3.3:70436268-70436287 | None:intergenic | 35.0% | |
| CCTTCACAAAACTAAGGATA+TGG | - | chr3.3:70438034-70438053 | MS.gene75691:CDS | 35.0% | |
| CGCCAGCATAATAATGTTTA+AGG | - | chr3.3:70437637-70437656 | MS.gene75691:intron | 35.0% | |
| CGGCAATATAACTGTCAATT+AGG | + | chr3.3:70437832-70437851 | None:intergenic | 35.0% | |
| CTACTTGAACAAGGTATGTA+CGG | - | chr3.3:70437467-70437486 | MS.gene75691:intron | 35.0% | |
| CTTAAAAAAGCTGCCACTAA+TGG | - | chr3.3:70436024-70436043 | MS.gene75691:CDS | 35.0% | |
| CTTTGTTGGCAATTTGCAAT+TGG | - | chr3.3:70437729-70437748 | MS.gene75691:intron | 35.0% | |
| GCAAATCAACTACTTGAACA+AGG | - | chr3.3:70437458-70437477 | MS.gene75691:intron | 35.0% | |
| TAACGTATATAGCACGTGAT+TGG | + | chr3.3:70436462-70436481 | None:intergenic | 35.0% | |
| TATAAAGACAACCGTCTTGA+TGG | - | chr3.3:70437914-70437933 | MS.gene75691:intron | 35.0% | |
| TCCAACATAAACAACCAGAT+GGG | + | chr3.3:70437191-70437210 | None:intergenic | 35.0% | |
| TCCGTGCAAAAACGAAAATA+AGG | + | chr3.3:70437156-70437175 | None:intergenic | 35.0% | |
| TCTTAGCAGTATTGTTAGGA+CGG | + | chr3.3:70438100-70438119 | None:intergenic | 35.0% | |
| TGAAGAAAGAGAGATTTCTG+CGG | + | chr3.3:70438069-70438088 | None:intergenic | 35.0% | |
| TGGAATATTTCAATGTGCCT+TGG | + | chr3.3:70437677-70437696 | None:intergenic | 35.0% | |
| TGTTGGAATATGTTCTCTCA+CGG | - | chr3.3:70437204-70437223 | MS.gene75691:CDS | 35.0% | |
| TTCATTCTGTCAAGGAAGTA+TGG | - | chr3.3:70436918-70436937 | MS.gene75691:CDS | 35.0% | |
| TTCCAACATAAACAACCAGA+TGG | + | chr3.3:70437192-70437211 | None:intergenic | 35.0% | |
| TTTCTTCACAGTGATTGTTG+GGG | - | chr3.3:70436614-70436633 | MS.gene75691:CDS | 35.0% | |
| ! | AACTTTTAAGCAGGAAGTTC+GGG | + | chr3.3:70436389-70436408 | None:intergenic | 35.0% |
| ! | CTGTCTTCAAGCATTTTCAT+TGG | - | chr3.3:70435973-70435992 | MS.gene75691:CDS | 35.0% |
| ! | CTTTTCTTCACAGTGATTGT+TGG | - | chr3.3:70436612-70436631 | MS.gene75691:CDS | 35.0% |
| ! | GAGATGCATTATGGTCTTTT+TGG | - | chr3.3:70436996-70437015 | MS.gene75691:intron | 35.0% |
| ! | GGGTTTGTGACAATTTTATC+TGG | - | chr3.3:70438002-70438021 | MS.gene75691:intron | 35.0% |
| !! | AGGTAACTTGTTACATTCCA+AGG | - | chr3.3:70437657-70437676 | MS.gene75691:intron | 35.0% |
| !! | ATTCAGCCTTGTTTCTCTAA+AGG | + | chr3.3:70437796-70437815 | None:intergenic | 35.0% |
| !! | CAACGTTATTGGTCTTTGTT+TGG | - | chr3.3:70435948-70435967 | MS.gene75691:CDS | 35.0% |
| !! | TTCAGCCTTGTTTCTCTAAA+GGG | + | chr3.3:70437795-70437814 | None:intergenic | 35.0% |
| !!! | ATTTATTTTGGCTGCAGGAA+TGG | - | chr3.3:70437940-70437959 | MS.gene75691:intron | 35.0% |
| !!! | CCATATCCTTAGTTTTGTGA+AGG | + | chr3.3:70438037-70438056 | None:intergenic | 35.0% |
| !!! | GAGCTTTAAGCATCATTTTC+AGG | - | chr3.3:70436694-70436713 | MS.gene75691:CDS | 35.0% |
| !!! | GGTTTATTTATTTTGGCTGC+AGG | - | chr3.3:70437935-70437954 | MS.gene75691:intron | 35.0% |
| !!! | TATCCTTAGTTTTGTGAAGG+AGG | + | chr3.3:70438034-70438053 | None:intergenic | 35.0% |
| !!! | TTTATTTTGGCTGCAGGAAT+GGG | - | chr3.3:70437941-70437960 | MS.gene75691:intron | 35.0% |
| ACCCATCTGGTTGTTTATGT+TGG | - | chr3.3:70437187-70437206 | MS.gene75691:CDS | 40.0% | |
| ATATCCTCCGACAACGTTAT+TGG | - | chr3.3:70435937-70435956 | MS.gene75691:CDS | 40.0% | |
| ATGATGCTTAAAGCTCCCAA+AGG | + | chr3.3:70436690-70436709 | None:intergenic | 40.0% | |
| CATATTTGTATGAACCACGG+TGG | - | chr3.3:70436175-70436194 | MS.gene75691:intron | 40.0% | |
| CATTATTATGCTGGCGATGA+TGG | + | chr3.3:70437633-70437652 | None:intergenic | 40.0% | |
| GAAGAAAGAGAGATTTCTGC+GGG | + | chr3.3:70438068-70438087 | None:intergenic | 40.0% | |
| GAATGAATGACTCTCTCATG+TGG | + | chr3.3:70436905-70436924 | None:intergenic | 40.0% | |
| GAGAGTCATTCATTCTGTCA+AGG | - | chr3.3:70436910-70436929 | MS.gene75691:CDS | 40.0% | |
| GGAAATTCTGCACAATGAGA+TGG | + | chr3.3:70436500-70436519 | None:intergenic | 40.0% | |
| GGTGTCTTAGCAGTATTGTT+AGG | + | chr3.3:70438104-70438123 | None:intergenic | 40.0% | |
| GTTATGTGTGTCAAAGCAGT+AGG | - | chr3.3:70437342-70437361 | MS.gene75691:intron | 40.0% | |
| GTTGGAATATGTTCTCTCAC+GGG | - | chr3.3:70437205-70437224 | MS.gene75691:CDS | 40.0% | |
| TACTACTAACATTCGCCTGT+CGG | + | chr3.3:70436337-70436356 | None:intergenic | 40.0% | |
| TCTTGAATTTGATCAGCCAC+AGG | - | chr3.3:70436144-70436163 | MS.gene75691:intron | 40.0% | |
| TGTATACTCTTGCTTGATGG+TGG | - | chr3.3:70437117-70437136 | MS.gene75691:CDS | 40.0% | |
| ! | ACTTTTAAGCAGGAAGTTCG+GGG | + | chr3.3:70436388-70436407 | None:intergenic | 40.0% |
| ! | GTCAACCCTTTAGAGAAACA+AGG | - | chr3.3:70437787-70437806 | MS.gene75691:intron | 40.0% |
| !! | ATCTGCATGTGTAGCTTTGT+TGG | - | chr3.3:70437715-70437734 | MS.gene75691:intron | 40.0% |
| !! | TTCGTTTTTGCACGGAGTTA+TGG | - | chr3.3:70437160-70437179 | MS.gene75691:CDS | 40.0% |
| !!! | TGTGCTGTATTTTTTCCGAC+AGG | - | chr3.3:70436319-70436338 | MS.gene75691:intron | 40.0% |
| AAAGGAGTTACAAGGATGGC+AGG | + | chr3.3:70436672-70436691 | None:intergenic | 45.0% | |
| AAGACCAATAACGTTGTCGG+AGG | + | chr3.3:70435944-70435963 | None:intergenic | 45.0% | |
| AAGCTCCCAAAGGAGTTACA+AGG | + | chr3.3:70436680-70436699 | None:intergenic | 45.0% | |
| AAGGTATGTACGGTTGAGTG+TGG | - | chr3.3:70437477-70437496 | MS.gene75691:intron | 45.0% | |
| ACCTGCTCTATTCCCATTAG+TGG | + | chr3.3:70436040-70436059 | None:intergenic | 45.0% | |
| AGATGCGTCTCAGATTGTGA+CGG | - | chr3.3:70437971-70437990 | MS.gene75691:intron | 45.0% | |
| ATTTGTATGAACCACGGTGG+TGG | - | chr3.3:70436178-70436197 | MS.gene75691:intron | 45.0% | |
| CAAATATGAATGCCCTCCTG+TGG | + | chr3.3:70436163-70436182 | None:intergenic | 45.0% | |
| GAATTTGATCAGCCACAGGA+GGG | - | chr3.3:70436148-70436167 | MS.gene75691:intron | 45.0% | |
| GATACTATTGTGGCAGGCTT+TGG | - | chr3.3:70437550-70437569 | MS.gene75691:intron | 45.0% | |
| GCCATCCTTGTAACTCCTTT+GGG | - | chr3.3:70436672-70436691 | MS.gene75691:CDS | 45.0% | |
| TCCCAAAGGAGTTACAAGGA+TGG | + | chr3.3:70436676-70436695 | None:intergenic | 45.0% | |
| TGAATTTGATCAGCCACAGG+AGG | - | chr3.3:70436147-70436166 | MS.gene75691:intron | 45.0% | |
| TGCCATCCTTGTAACTCCTT+TGG | - | chr3.3:70436671-70436690 | MS.gene75691:CDS | 45.0% | |
| TTCTCTCACGGGCTCAATTA+CGG | - | chr3.3:70437216-70437235 | MS.gene75691:CDS | 45.0% | |
| TTTGTATGAACCACGGTGGT+GGG | - | chr3.3:70436179-70436198 | MS.gene75691:intron | 45.0% | |
| ! | AGATTGTGACGGAGTTGTGT+GGG | - | chr3.3:70437982-70438001 | MS.gene75691:intron | 45.0% |
| ! | ATCTGGGATACTATTGTGGC+AGG | - | chr3.3:70437544-70437563 | MS.gene75691:intron | 45.0% |
| ! | GTTTCTCTAAAGGGTTGACG+CGG | + | chr3.3:70437786-70437805 | None:intergenic | 45.0% |
| GAGTTATGGACAGACCCATC+TGG | - | chr3.3:70437174-70437193 | MS.gene75691:CDS | 50.0% | |
| GCAGTATTGTTAGGACGGTG+TGG | + | chr3.3:70438095-70438114 | None:intergenic | 50.0% | |
| GCCAACGGAACTACCTATGT+GGG | - | chr3.3:70436435-70436454 | MS.gene75691:CDS | 50.0% | |
| GCCACTAATGGGAATAGAGC+AGG | - | chr3.3:70436036-70436055 | MS.gene75691:CDS | 50.0% | |
| TCCCACATAGGTAGTTCCGT+TGG | + | chr3.3:70436439-70436458 | None:intergenic | 50.0% | |
| TGTACGGTTGAGTGTGGAAG+TGG | - | chr3.3:70437483-70437502 | MS.gene75691:intron | 50.0% | |
| TTGCATGTCTTTGGCGTGCT+TGG | - | chr3.3:70436833-70436852 | MS.gene75691:intron | 50.0% | |
| ! | CAGATTGTGACGGAGTTGTG+TGG | - | chr3.3:70437981-70438000 | MS.gene75691:intron | 50.0% |
| ! | GCTGGCGATGATGGTAAATG+AGG | + | chr3.3:70437624-70437643 | None:intergenic | 50.0% |
| !! | TGGCAACTTGCTACAGAACC+AGG | - | chr3.3:70436938-70436957 | MS.gene75691:CDS | 50.0% |
| AGTTCCGTTGGCGAGCTAAG+AGG | + | chr3.3:70436427-70436446 | None:intergenic | 55.0% | |
| CGCCAACGGAACTACCTATG+TGG | - | chr3.3:70436434-70436453 | MS.gene75691:CDS | 55.0% | |
| GATGTGCTCTCTGTGTGGTG+GGG | - | chr3.3:70436855-70436874 | MS.gene75691:CDS | 55.0% | |
| GCTTGGATGTGCTCTCTGTG+TGG | - | chr3.3:70436850-70436869 | MS.gene75691:CDS | 55.0% | |
| GGATGTGCTCTCTGTGTGGT+GGG | - | chr3.3:70436854-70436873 | MS.gene75691:CDS | 55.0% | |
| GGTACCTCTTAGCTCGCCAA+CGG | - | chr3.3:70436420-70436439 | MS.gene75691:CDS | 55.0% | |
| TGGATGTGCTCTCTGTGTGG+TGG | - | chr3.3:70436853-70436872 | MS.gene75691:CDS | 55.0% | |
| ! | GCACGTGATTGGTCCCACAT+AGG | + | chr3.3:70436451-70436470 | None:intergenic | 55.0% |
| !! | CTCTTGCTTGATGGTGGCGC+TGG | - | chr3.3:70437123-70437142 | MS.gene75691:CDS | 60.0% |
| !! | TATGAACCACGGTGGTGGGC+TGG | - | chr3.3:70436183-70436202 | MS.gene75691:intron | 60.0% |
| GTCATTCCAGCCCACCACCG+TGG | + | chr3.3:70436192-70436211 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 70435931 | 70438142 | 70435931 | ID=MS.gene75691 |
| chr3.3 | mRNA | 70435931 | 70438142 | 70435931 | ID=MS.gene75691.t1;Parent=MS.gene75691 |
| chr3.3 | exon | 70438016 | 70438142 | 70438016 | ID=MS.gene75691.t1.exon1;Parent=MS.gene75691.t1 |
| chr3.3 | CDS | 70438016 | 70438142 | 70438016 | ID=cds.MS.gene75691.t1;Parent=MS.gene75691.t1 |
| chr3.3 | exon | 70437857 | 70437913 | 70437857 | ID=MS.gene75691.t1.exon2;Parent=MS.gene75691.t1 |
| chr3.3 | CDS | 70437857 | 70437913 | 70437857 | ID=cds.MS.gene75691.t1;Parent=MS.gene75691.t1 |
| chr3.3 | exon | 70437358 | 70437448 | 70437358 | ID=MS.gene75691.t1.exon3;Parent=MS.gene75691.t1 |
| chr3.3 | CDS | 70437358 | 70437448 | 70437358 | ID=cds.MS.gene75691.t1;Parent=MS.gene75691.t1 |
| chr3.3 | exon | 70437114 | 70437274 | 70437114 | ID=MS.gene75691.t1.exon4;Parent=MS.gene75691.t1 |
| chr3.3 | CDS | 70437114 | 70437274 | 70437114 | ID=cds.MS.gene75691.t1;Parent=MS.gene75691.t1 |
| chr3.3 | exon | 70436836 | 70436963 | 70436836 | ID=MS.gene75691.t1.exon5;Parent=MS.gene75691.t1 |
| chr3.3 | CDS | 70436836 | 70436963 | 70436836 | ID=cds.MS.gene75691.t1;Parent=MS.gene75691.t1 |
| chr3.3 | exon | 70436594 | 70436731 | 70436594 | ID=MS.gene75691.t1.exon6;Parent=MS.gene75691.t1 |
| chr3.3 | CDS | 70436594 | 70436731 | 70436594 | ID=cds.MS.gene75691.t1;Parent=MS.gene75691.t1 |
| chr3.3 | exon | 70436415 | 70436507 | 70436415 | ID=MS.gene75691.t1.exon7;Parent=MS.gene75691.t1 |
| chr3.3 | CDS | 70436415 | 70436507 | 70436415 | ID=cds.MS.gene75691.t1;Parent=MS.gene75691.t1 |
| chr3.3 | exon | 70435931 | 70436116 | 70435931 | ID=MS.gene75691.t1.exon8;Parent=MS.gene75691.t1 |
| chr3.3 | CDS | 70435931 | 70436116 | 70435931 | ID=cds.MS.gene75691.t1;Parent=MS.gene75691.t1 |
| Gene Sequence |
| Protein sequence |
