Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75728.t1 | XP_024633428.1 | 88.2 | 1290 | 94 | 7 | 1 | 1273 | 1 | 1249 | 0.00E+00 | 2207.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75728.t1 | Q7Y1C4 | 51.9 | 933 | 402 | 15 | 362 | 1273 | 246 | 1152 | 2.1e-257 | 890.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75728.t1 | G7J9J4 | 88.0 | 1295 | 93 | 8 | 1 | 1273 | 1 | 1254 | 0.0e+00 | 2202.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04985 | MS.gene75728 | 0.80758 | 4.72E-50 | -1.69E-46 |
MS.gene049989 | MS.gene75728 | 0.858035 | 1.09E-62 | -1.69E-46 |
MS.gene050297 | MS.gene75728 | 0.806467 | 8.11E-50 | -1.69E-46 |
MS.gene050648 | MS.gene75728 | 0.803919 | 2.77E-49 | -1.69E-46 |
MS.gene05124 | MS.gene75728 | 0.801931 | 7.13E-49 | -1.69E-46 |
MS.gene052367 | MS.gene75728 | 0.80573 | 1.16E-49 | -1.69E-46 |
MS.gene053173 | MS.gene75728 | 0.802543 | 5.34E-49 | -1.69E-46 |
MS.gene053348 | MS.gene75728 | 0.817502 | 3.19E-52 | -1.69E-46 |
MS.gene053416 | MS.gene75728 | 0.832262 | 1.05E-55 | -1.69E-46 |
MS.gene053417 | MS.gene75728 | 0.827476 | 1.53E-54 | -1.69E-46 |
MS.gene056526 | MS.gene75728 | 0.824369 | 8.38E-54 | -1.69E-46 |
MS.gene058827 | MS.gene75728 | 0.808645 | 2.80E-50 | -1.69E-46 |
MS.gene060473 | MS.gene75728 | 0.826803 | 2.22E-54 | -1.69E-46 |
MS.gene060565 | MS.gene75728 | 0.821979 | 3.03E-53 | -1.69E-46 |
MS.gene06093 | MS.gene75728 | 0.824507 | 7.77E-54 | -1.69E-46 |
MS.gene061260 | MS.gene75728 | 0.8364 | 9.57E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75728.t1 | MTR_3g083250 | 88.773 | 1149 | 85 | 6 | 169 | 1273 | 106 | 1254 | 0.0 | 2067 |
MS.gene75728.t1 | MTR_3g083250 | 73.554 | 363 | 48 | 5 | 1 | 315 | 1 | 363 | 2.92e-145 | 473 |
MS.gene75728.t1 | MTR_3g083250 | 50.838 | 179 | 61 | 4 | 61 | 216 | 255 | 429 | 2.89e-38 | 156 |
MS.gene75728.t1 | MTR_0191s0030 | 71.529 | 850 | 168 | 7 | 286 | 1117 | 15 | 808 | 0.0 | 1186 |
MS.gene75728.t1 | MTR_0191s0030 | 53.488 | 129 | 36 | 3 | 57 | 183 | 1 | 107 | 3.69e-27 | 120 |
MS.gene75728.t1 | MTR_6g033115 | 76.646 | 638 | 104 | 5 | 604 | 1237 | 4 | 600 | 0.0 | 985 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75728.t1 | AT5G01630 | 52.454 | 917 | 393 | 14 | 378 | 1273 | 258 | 1152 | 0.0 | 924 |
MS.gene75728.t1 | AT4G00020 | 51.363 | 917 | 399 | 14 | 378 | 1273 | 258 | 1148 | 0.0 | 911 |
MS.gene75728.t1 | AT4G00020 | 51.682 | 892 | 386 | 13 | 378 | 1250 | 258 | 1123 | 0.0 | 893 |
MS.gene75728.t1 | AT4G00020 | 49.730 | 925 | 398 | 17 | 378 | 1271 | 258 | 1146 | 0.0 | 860 |
MS.gene75728.t1 | AT4G00020 | 51.282 | 858 | 369 | 14 | 378 | 1212 | 258 | 1089 | 0.0 | 840 |
MS.gene75728.t1 | AT4G00020 | 51.669 | 749 | 320 | 12 | 378 | 1107 | 258 | 983 | 0.0 | 743 |
Find 299 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTATTGATTTCCGATTAT+TGG | 0.177850 | 3.3:-70042683 | None:intergenic |
AATATAACTCACATTTAATT+TGG | 0.178578 | 3.3:-70041883 | None:intergenic |
GAGAAAGCTTTGAAAGATTC+TGG | 0.189705 | 3.3:+70041998 | MS.gene75728:CDS |
GGGAGGTCGTTATCTATTTC+TGG | 0.198566 | 3.3:+70037438 | MS.gene75728:CDS |
GTTAGAGCAAAGACGTTATT+AGG | 0.201204 | 3.3:+70036517 | MS.gene75728:CDS |
CAATTATCCTCTGGTGCTTC+TGG | 0.202376 | 3.3:+70038190 | MS.gene75728:CDS |
CTGGCAGTTTGGAATTTAAT+TGG | 0.207082 | 3.3:-70037414 | None:intergenic |
ATTGCCTCATTTGCAGCTTA+TGG | 0.211304 | 3.3:+70036843 | MS.gene75728:CDS |
ATTGCCTCATTTGCAGCTTA+TGG | 0.211304 | 3.3:+70037059 | MS.gene75728:CDS |
ATTGCCTCATTTGCAGCTTA+TGG | 0.211304 | 3.3:+70037275 | MS.gene75728:CDS |
ACAACAGATTGGAACTTAAT+TGG | 0.219435 | 3.3:-70036982 | None:intergenic |
ACAACAGATTGGAACTTAAT+TGG | 0.219435 | 3.3:-70037198 | None:intergenic |
AGTTTACTTCTTCACATAAA+TGG | 0.223688 | 3.3:+70039723 | MS.gene75728:CDS |
GATTTCCGATTATTGGAAAA+TGG | 0.239451 | 3.3:-70042676 | None:intergenic |
GCTTCTTGGTGATCCTGATT+TGG | 0.254490 | 3.3:+70037485 | MS.gene75728:CDS |
CTTCTTGGTGATCCTGATTT+GGG | 0.261549 | 3.3:+70037486 | MS.gene75728:CDS |
TGCCTCCCTGCTCTGATTCC+CGG | 0.270037 | 3.3:-70039258 | None:intergenic |
GACTCACCTGCTTCTGTGTT+GGG | 0.271516 | 3.3:-70042126 | None:intergenic |
TCAAGACGAACCTCGTTTAC+AGG | 0.275730 | 3.3:+70036609 | MS.gene75728:CDS |
GATTTGGGAGATTTCTTTGA+TGG | 0.299751 | 3.3:+70037501 | MS.gene75728:CDS |
CATATCTGCCATTAGGAATT+CGG | 0.300492 | 3.3:-70041823 | None:intergenic |
TGTAAAGAATGGGATATATT+CGG | 0.302175 | 3.3:-70039960 | None:intergenic |
TGACAATGGAACATCTAAAA+TGG | 0.304206 | 3.3:-70039410 | None:intergenic |
ACTACACGCAACCTCATAAA+TGG | 0.309834 | 3.3:-70042043 | None:intergenic |
TCCTTTGCATTAGAAGATAA+TGG | 0.317935 | 3.3:-70042526 | None:intergenic |
CAGGCTGCTTATTATTTGTA+TGG | 0.322115 | 3.3:-70037956 | None:intergenic |
AATGCAATAGATGATAGTTT+TGG | 0.322409 | 3.3:+70036430 | MS.gene75728:CDS |
AGGACCATACAAACCATATA+TGG | 0.322671 | 3.3:+70043292 | MS.gene75728:CDS |
GGTTCGCATATTTATGATTA+CGG | 0.330430 | 3.3:+70041750 | MS.gene75728:CDS |
ATCATTACAAATGGATTGTA+TGG | 0.332897 | 3.3:+70038893 | MS.gene75728:CDS |
TTACCTTTCTTTGTAAAGAA+TGG | 0.343658 | 3.3:-70039971 | None:intergenic |
GGAATCAAATTTCAAATAAT+AGG | 0.344969 | 3.3:-70043340 | None:intergenic |
CCGTAGATCCGGCAAGGTTA+TGG | 0.348151 | 3.3:-70043042 | None:intergenic |
TTCTTGTTATACAAGGGTTT+CGG | 0.353305 | 3.3:-70037813 | None:intergenic |
GCAGGTTTATGCGGCTGGAA+TGG | 0.353377 | 3.3:+70039577 | MS.gene75728:CDS |
AAAACCTCAAGGGGTGAAAC+TGG | 0.358217 | 3.3:-70039601 | None:intergenic |
TGTCACCTGTCTGGCTGTAT+TGG | 0.358302 | 3.3:-70038425 | None:intergenic |
ATCCCATTCTTTACAAAGAA+AGG | 0.360000 | 3.3:+70039968 | MS.gene75728:CDS |
TAGCATCAGCAACCCATATA+TGG | 0.360952 | 3.3:-70043305 | None:intergenic |
GTCACCAGAGGTAGAGATAT+TGG | 0.362686 | 3.3:-70038042 | None:intergenic |
AAAATTGTGCAACCAGATAT+TGG | 0.364051 | 3.3:+70036712 | MS.gene75728:CDS |
AAACGCGCTAGGAGGCTTCT+TGG | 0.367921 | 3.3:+70037471 | MS.gene75728:CDS |
TAAAGTTGCTGGTCCACCTT+TGG | 0.369700 | 3.3:+70039879 | MS.gene75728:CDS |
TACCTTTCTTTGTAAAGAAT+GGG | 0.373115 | 3.3:-70039970 | None:intergenic |
TTGGATAGTGAAATGGATAT+CGG | 0.378756 | 3.3:-70038234 | None:intergenic |
GAATATTACTAACACCAGTT+TGG | 0.382112 | 3.3:-70036777 | None:intergenic |
ACGACCTCCCACTGGCAGTT+TGG | 0.385339 | 3.3:-70037425 | None:intergenic |
CAAATGGATTGTATGGAAAC+TGG | 0.386415 | 3.3:+70038900 | MS.gene75728:CDS |
CACTTCATTCTTGTTATACA+AGG | 0.388000 | 3.3:-70037820 | None:intergenic |
CTGCTCTGATTCCCGGTTTG+TGG | 0.390136 | 3.3:-70039251 | None:intergenic |
GTCACCTGTCTGGCTGTATT+GGG | 0.390519 | 3.3:-70038424 | None:intergenic |
CGGTAATTGTTATCGGCGTC+GGG | 0.391361 | 3.3:-70036157 | None:intergenic |
TTGCCACCGGTAATTGTTAT+CGG | 0.392866 | 3.3:-70036164 | None:intergenic |
CCACTACGACTACCAATATC+TGG | 0.393557 | 3.3:-70036724 | None:intergenic |
GGAGAAGCATATGCAATTGC+AGG | 0.393974 | 3.3:+70042433 | MS.gene75728:CDS |
ATGGACTGTCTTAACGGTAT+TGG | 0.396758 | 3.3:-70037937 | None:intergenic |
ATTTGTATGGACTGTCTTAA+CGG | 0.397845 | 3.3:-70037943 | None:intergenic |
TGTTGTAGATAATATTGTTT+CGG | 0.407964 | 3.3:+70041707 | MS.gene75728:CDS |
CATGGAAGGAAGGGGAGGGG+TGG | 0.408337 | 3.3:-70036245 | None:intergenic |
CTTGTGCAGATCTGGGGAGC+AGG | 0.412599 | 3.3:+70039559 | MS.gene75728:intron |
GAATATTACTAACAACAGAT+TGG | 0.415489 | 3.3:-70036993 | None:intergenic |
GAATATTACTAACAACAGAT+TGG | 0.415489 | 3.3:-70037209 | None:intergenic |
TCAAAGAAATCTCCCAAATC+AGG | 0.416428 | 3.3:-70037498 | None:intergenic |
CCAATCAACCATAACCTTGC+CGG | 0.418238 | 3.3:+70043034 | MS.gene75728:CDS |
AATTCCTTGATGTGCATCCT+TGG | 0.419461 | 3.3:-70038253 | None:intergenic |
TGTTTGTAGGACAGAAGCTT+CGG | 0.420765 | 3.3:+70039455 | MS.gene75728:CDS |
GTAAAGAATGGGATATATTC+GGG | 0.420871 | 3.3:-70039959 | None:intergenic |
CCGGAGTCATATCTGCCATT+AGG | 0.422638 | 3.3:-70041830 | None:intergenic |
ATGAATCATGATCAAACAAT+GGG | 0.424139 | 3.3:-70043006 | None:intergenic |
CTCCGTGCTGTGTCAATAGA+TGG | 0.427383 | 3.3:-70038519 | None:intergenic |
TTATACAAGGGTTTCGGTCC+AGG | 0.427521 | 3.3:-70037807 | None:intergenic |
AATAATAAGCAGCCTGCTAG+TGG | 0.430845 | 3.3:+70037963 | MS.gene75728:CDS |
CAGGTTTATGCGGCTGGAAT+GGG | 0.431824 | 3.3:+70039578 | MS.gene75728:CDS |
GGGTCTTGAATCATTACAAA+TGG | 0.432801 | 3.3:+70038884 | MS.gene75728:CDS |
AGCTTCGCAACGAAGGTAAT+GGG | 0.433487 | 3.3:+70037715 | MS.gene75728:CDS |
CAACCCATATATGGTTTGTA+TGG | 0.434022 | 3.3:-70043296 | None:intergenic |
TAATCGACAGGTAAAGTTGC+TGG | 0.434418 | 3.3:+70039868 | MS.gene75728:intron |
AAGAAGGCATAGTAACAATC+TGG | 0.435277 | 3.3:+70042101 | MS.gene75728:CDS |
TTGTCAAAGCAACTGGCTGC+TGG | 0.435548 | 3.3:+70039427 | MS.gene75728:CDS |
CGGTTTAGTACCTCAAACTT+TGG | 0.436809 | 3.3:+70039927 | MS.gene75728:CDS |
CCGACGCCGATAACAATTAC+CGG | 0.438369 | 3.3:+70036158 | MS.gene75728:CDS |
GCTTTGAAAGATTCTGGCCT+GGG | 0.439971 | 3.3:+70042004 | MS.gene75728:CDS |
ACCATTGGGCAGGGCATTGG+TGG | 0.442677 | 3.3:+70037908 | MS.gene75728:CDS |
CACAAACCGGGAATCAGAGC+AGG | 0.445691 | 3.3:+70039252 | MS.gene75728:CDS |
AGACTCACCTGCTTCTGTGT+TGG | 0.448135 | 3.3:-70042127 | None:intergenic |
TGCTATCCAGCTAGGTGTGC+TGG | 0.450035 | 3.3:+70038937 | MS.gene75728:CDS |
GCATTATCTGAGCCACAAAC+CGG | 0.451413 | 3.3:+70039239 | MS.gene75728:CDS |
CCGGCAAGGTTATGGTTGAT+TGG | 0.451913 | 3.3:-70043034 | None:intergenic |
TGTTCCATTGTCAAAGCAAC+TGG | 0.452238 | 3.3:+70039420 | MS.gene75728:CDS |
AAAACCATTGGGCAGGGCAT+TGG | 0.452394 | 3.3:+70037905 | MS.gene75728:CDS |
AAGCTTCGCAACGAAGGTAA+TGG | 0.453729 | 3.3:+70037714 | MS.gene75728:CDS |
TGGAACATATAGAGCTCATT+GGG | 0.454267 | 3.3:+70039743 | MS.gene75728:CDS |
CTGCCAGCTCCGTCAGAAGA+TGG | 0.455648 | 3.3:+70043388 | MS.gene75728:CDS |
GGCAAATAGACAGTCACAAA+TGG | 0.456805 | 3.3:+70041964 | MS.gene75728:intron |
ATGGAACATATAGAGCTCAT+TGG | 0.457747 | 3.3:+70039742 | MS.gene75728:CDS |
ATTGCAGGACTCATACCATT+TGG | 0.457860 | 3.3:+70042448 | MS.gene75728:CDS |
TTAGTACCTCAAACTTTGGC+AGG | 0.459938 | 3.3:+70039931 | MS.gene75728:CDS |
GGGGTGGGAATAGAAGTAGG+AGG | 0.461215 | 3.3:-70036229 | None:intergenic |
TTTGCAGCCTTCGAAACAAA+TGG | 0.462337 | 3.3:+70037680 | MS.gene75728:CDS |
TTTATGAGGTTGCGTGTAGT+TGG | 0.466003 | 3.3:+70042046 | MS.gene75728:CDS |
GAGTATCAGAAGGAAATAAC+TGG | 0.466519 | 3.3:+70041729 | MS.gene75728:CDS |
CAATGTAATTACCGTAGATC+CGG | 0.466584 | 3.3:-70043053 | None:intergenic |
CATACCATTTGGCTCTGATT+CGG | 0.466881 | 3.3:+70042459 | MS.gene75728:CDS |
GTAATTCCTGCCAAAGTTTG+AGG | 0.467704 | 3.3:-70039937 | None:intergenic |
GAGAAGTAACGCCATTTATG+AGG | 0.467933 | 3.3:+70042032 | MS.gene75728:CDS |
TTTAGTTGGTAGGTTGAACA+TGG | 0.468541 | 3.3:+70036906 | MS.gene75728:CDS |
TTTAGTTGGTAGGTTGAACA+TGG | 0.468541 | 3.3:+70037122 | MS.gene75728:CDS |
GGTGGGAATAGAAGTAGGAG+GGG | 0.468575 | 3.3:-70036227 | None:intergenic |
ATGGAAGGAAGGGGAGGGGT+GGG | 0.469291 | 3.3:-70036244 | None:intergenic |
GGGGAGCAGGTTTATGCGGC+TGG | 0.469394 | 3.3:+70039572 | MS.gene75728:CDS |
TGCATCCTTGGATAGTGAAA+TGG | 0.470058 | 3.3:-70038241 | None:intergenic |
ATTGTTACTATGCCTTCTTT+AGG | 0.470118 | 3.3:-70042097 | None:intergenic |
ATTACCTGATGTCACCTGTC+TGG | 0.470613 | 3.3:-70038434 | None:intergenic |
GCTGCTGGAAGATTGTTTGT+AGG | 0.471023 | 3.3:+70039442 | MS.gene75728:CDS |
ATATCTGCCATTAGGAATTC+GGG | 0.471026 | 3.3:-70041822 | None:intergenic |
GAAAAGGTGTTGGGTATAGT+TGG | 0.472509 | 3.3:+70043532 | MS.gene75728:CDS |
GAGGATGGAGAGTAAAATGA+TGG | 0.477162 | 3.3:+70040131 | MS.gene75728:CDS |
ATTAAATTCCAAACTGCCAG+TGG | 0.479529 | 3.3:+70037417 | MS.gene75728:CDS |
CCGGTAATTGTTATCGGCGT+CGG | 0.480036 | 3.3:-70036158 | None:intergenic |
AATAGAGAAACTCAAGGAAA+AGG | 0.481279 | 3.3:+70043516 | MS.gene75728:CDS |
TTAGTTGGTACGTTGAAGAA+TGG | 0.482066 | 3.3:+70037339 | MS.gene75728:CDS |
CGGAAATCAATACCATTGTC+AGG | 0.483234 | 3.3:+70042691 | MS.gene75728:CDS |
GTTTGTAGGACAGAAGCTTC+GGG | 0.483618 | 3.3:+70039456 | MS.gene75728:CDS |
AGCCCATCTTCTGACGGAGC+TGG | 0.484532 | 3.3:-70043391 | None:intergenic |
GATTTGGCTCAATTATCCTC+TGG | 0.484666 | 3.3:+70038181 | MS.gene75728:intron |
CACGTGGAAAACCATTGGGC+AGG | 0.486395 | 3.3:+70037898 | MS.gene75728:CDS |
TCATTTCAAAGTCCTTTAGT+TGG | 0.487907 | 3.3:+70037324 | MS.gene75728:CDS |
TGCAGAACCCGAATTCCTAA+TGG | 0.487970 | 3.3:+70041815 | MS.gene75728:CDS |
AGCAGCCTGCTAGTGGGAAA+AGG | 0.487997 | 3.3:+70037970 | MS.gene75728:CDS |
AGCTTTGAAAGATTCTGGCC+TGG | 0.488036 | 3.3:+70042003 | MS.gene75728:CDS |
AAACTCAAGGAAAAGGTGTT+GGG | 0.490315 | 3.3:+70043523 | MS.gene75728:CDS |
GCTCATTGGGCAGATCGGTT+AGG | 0.491199 | 3.3:+70039756 | MS.gene75728:CDS |
AAAGTTACTATTTCTTCTAA+CGG | 0.491582 | 3.3:+70036490 | MS.gene75728:CDS |
ATCATGAATGGGTTACAGTC+AGG | 0.496675 | 3.3:+70042944 | MS.gene75728:CDS |
GCTCCGATAAAATTCCAAAC+TGG | 0.497788 | 3.3:+70036763 | MS.gene75728:CDS |
GCCATTATCTTCTAATGCAA+AGG | 0.497976 | 3.3:+70042525 | MS.gene75728:CDS |
CCATAACCTTGCCGGATCTA+CGG | 0.498113 | 3.3:+70043042 | MS.gene75728:CDS |
GGAGGGGTGGGAATAGAAGT+AGG | 0.501265 | 3.3:-70036232 | None:intergenic |
CAATGGGGAGCAAAAGCAAA+TGG | 0.502054 | 3.3:-70042990 | None:intergenic |
TTCTGAGGTGAGAACACTGT+GGG | 0.503240 | 3.3:-70043362 | None:intergenic |
GAAAATTCCATTTGTTTCGA+AGG | 0.503805 | 3.3:-70037687 | None:intergenic |
GGATTCACGTGGAAAACCAT+TGG | 0.504425 | 3.3:+70037893 | MS.gene75728:CDS |
GTGTCATTTGATGTACCAAA+GGG | 0.504965 | 3.3:-70037614 | None:intergenic |
GAAACTCAAGGAAAAGGTGT+TGG | 0.504991 | 3.3:+70043522 | MS.gene75728:CDS |
ATTTGTTGTGCATGTGGGAA+AGG | 0.506609 | 3.3:+70042868 | MS.gene75728:CDS |
GAATTTCTTACTTGGAAAGT+GGG | 0.507846 | 3.3:-70042726 | None:intergenic |
TGCTTCTGGACTCAAAAGAA+AGG | 0.512413 | 3.3:+70038204 | MS.gene75728:CDS |
TTAAATTTCTTAGCATTCTG+AGG | 0.512782 | 3.3:-70036577 | None:intergenic |
GGAATTTCTTACTTGGAAAG+TGG | 0.513998 | 3.3:-70042727 | None:intergenic |
TTAAAAGTTGAATTAACTGA+TGG | 0.514214 | 3.3:+70039281 | MS.gene75728:CDS |
CTGGAACCCAACACAGAAGC+AGG | 0.516002 | 3.3:+70042120 | MS.gene75728:CDS |
TTCTCCCAATACAGCCAGAC+AGG | 0.517074 | 3.3:+70038420 | MS.gene75728:CDS |
TTGGGAGATTTCTTTGATGG+TGG | 0.517505 | 3.3:+70037504 | MS.gene75728:CDS |
ACAGCCAGACAGGTGACATC+AGG | 0.518455 | 3.3:+70038430 | MS.gene75728:CDS |
GCTAGTGGGAAAAGGAGAAT+AGG | 0.518525 | 3.3:+70037978 | MS.gene75728:CDS |
GGCTAAGATATATAAGATGC+TGG | 0.518921 | 3.3:+70041785 | MS.gene75728:CDS |
CAGGTGACATCAGGTAATGC+AGG | 0.519570 | 3.3:+70038439 | MS.gene75728:CDS |
ACTTTGAAACGACGCAGCAC+TGG | 0.520218 | 3.3:-70036653 | None:intergenic |
ACCATCAAGAAAATTCTTGA+GGG | 0.521881 | 3.3:+70039143 | MS.gene75728:CDS |
GGGTGGGAATAGAAGTAGGA+GGG | 0.522833 | 3.3:-70036228 | None:intergenic |
GCAAAAGAACTAAGTTGCTC+CGG | 0.523062 | 3.3:-70041849 | None:intergenic |
ATTTCCAATATCTCTACCTC+TGG | 0.523225 | 3.3:+70038038 | MS.gene75728:CDS |
GTGCATAGTGGTAGTGTTAG+TGG | 0.525584 | 3.3:+70036946 | MS.gene75728:CDS |
GTGCATAGTGGTAGTGTTAG+TGG | 0.525584 | 3.3:+70037162 | MS.gene75728:CDS |
CTATCCATAAGCTGCAAATG+AGG | 0.526428 | 3.3:-70036847 | None:intergenic |
CTATCCATAAGCTGCAAATG+AGG | 0.526428 | 3.3:-70037063 | None:intergenic |
CTATCCATAAGCTGCAAATG+AGG | 0.526428 | 3.3:-70037279 | None:intergenic |
TGGATAGTGAAATGGATATC+GGG | 0.526457 | 3.3:-70038233 | None:intergenic |
GCAGCCAGTTGCTTTGACAA+TGG | 0.526991 | 3.3:-70039424 | None:intergenic |
GTACATGGAAGGAAGGGGAG+GGG | 0.527310 | 3.3:-70036248 | None:intergenic |
CAGAGAGTCATCATTGAAGA+AGG | 0.529558 | 3.3:-70039176 | None:intergenic |
TTTATGCATTTGAAAGCCAA+AGG | 0.530660 | 3.3:-70039895 | None:intergenic |
GATTCACGTGGAAAACCATT+GGG | 0.530690 | 3.3:+70037894 | MS.gene75728:CDS |
CTGATCATGTGCTTGACAGT+GGG | 0.531781 | 3.3:+70039216 | MS.gene75728:CDS |
CAACGAGATAAGCCTAAAGA+AGG | 0.531883 | 3.3:+70042085 | MS.gene75728:CDS |
AACAGAGGAAGTGATTGTGC+TGG | 0.533610 | 3.3:-70037562 | None:intergenic |
AAGTTGAATTAACTGATGGA+TGG | 0.535731 | 3.3:+70039285 | MS.gene75728:CDS |
TTCAAAGTCCTTTAGTTGGT+AGG | 0.535790 | 3.3:+70036896 | MS.gene75728:CDS |
TTCAAAGTCCTTTAGTTGGT+AGG | 0.535790 | 3.3:+70037112 | MS.gene75728:CDS |
ATTGGTAGTCGTAGTGGTGC+TGG | 0.536017 | 3.3:+70036730 | MS.gene75728:CDS |
TGGCTCTGATAGTAATGGTA+TGG | 0.536135 | 3.3:+70038480 | MS.gene75728:CDS |
GTGGGAATAGAAGTAGGAGG+GGG | 0.536151 | 3.3:-70036226 | None:intergenic |
TTTGTTTCGAAGGCTGCAAA+GGG | 0.537403 | 3.3:-70037677 | None:intergenic |
TGGGCCAGTTTCACCCCTTG+AGG | 0.537797 | 3.3:+70039597 | MS.gene75728:CDS |
CATTACTATCAGAGCCATCA+TGG | 0.538675 | 3.3:-70038474 | None:intergenic |
CATGATGGCTCTGATAGTAA+TGG | 0.539102 | 3.3:+70038475 | MS.gene75728:CDS |
CTTGTATGGCGCTAGACGCT+CGG | 0.539469 | 3.3:+70041683 | MS.gene75728:intron |
CAAGTCAGCAAAAGAAGCAA+TGG | 0.541240 | 3.3:+70042900 | MS.gene75728:CDS |
ACTGATGGATCCATCATGAA+TGG | 0.542358 | 3.3:+70042932 | MS.gene75728:CDS |
TGATGGAGCTGCACAATCAA+AGG | 0.543075 | 3.3:+70040148 | MS.gene75728:CDS |
TGTTGCATTTGTTGTGCATG+TGG | 0.544406 | 3.3:+70042862 | MS.gene75728:CDS |
TCAAATAAGCTTCGCAACGA+AGG | 0.544748 | 3.3:+70037708 | MS.gene75728:CDS |
ATTTGTTTCGAAGGCTGCAA+AGG | 0.544759 | 3.3:-70037678 | None:intergenic |
GGACCATACAAACCATATAT+GGG | 0.545077 | 3.3:+70043293 | MS.gene75728:CDS |
TTCTTCAACGTACCAACTAA+AGG | 0.545451 | 3.3:-70037336 | None:intergenic |
TGTTGTAATATCAGAGAGGA+TGG | 0.546484 | 3.3:+70040116 | MS.gene75728:CDS |
TTAGCACCACCACCACTACC+TGG | 0.547242 | 3.3:-70037384 | None:intergenic |
TATGAAAGAGAAGTGAATCA+TGG | 0.547598 | 3.3:+70039110 | MS.gene75728:CDS |
TTAGTTAGTAGATCGAAAAG+TGG | 0.547945 | 3.3:+70036679 | MS.gene75728:CDS |
GCAAGGTTATGGTTGATTGG+TGG | 0.548799 | 3.3:-70043031 | None:intergenic |
GTGCAACCAGGTAGTGGTGG+TGG | 0.549195 | 3.3:+70037378 | MS.gene75728:CDS |
AAATTTGTGCAACCAGGTAG+TGG | 0.550143 | 3.3:+70037372 | MS.gene75728:CDS |
AATGAATCATGATCAAACAA+TGG | 0.551098 | 3.3:-70043007 | None:intergenic |
GAAGATCGTACATGGAAGGA+AGG | 0.551575 | 3.3:-70036255 | None:intergenic |
TATGATTACGGCAATAGCGA+AGG | 0.551854 | 3.3:+70041762 | MS.gene75728:CDS |
ATGTTCAACCTACCAACTAA+AGG | 0.553197 | 3.3:-70036904 | None:intergenic |
ATGTTCAACCTACCAACTAA+AGG | 0.553197 | 3.3:-70037120 | None:intergenic |
ATGGGCTAGCAATTCGAGCT+TGG | 0.554921 | 3.3:+70043407 | MS.gene75728:CDS |
AAGATCGTACATGGAAGGAA+GGG | 0.555599 | 3.3:-70036254 | None:intergenic |
GTAGAGATATTGGAAATTCG+AGG | 0.556021 | 3.3:-70038032 | None:intergenic |
TCTGATCATGTGCTTGACAG+TGG | 0.559826 | 3.3:+70039215 | MS.gene75728:CDS |
TCGTTTCAAAGTCCTTTAGT+TGG | 0.562899 | 3.3:+70036892 | MS.gene75728:CDS |
TCGTTTCAAAGTCCTTTAGT+TGG | 0.562899 | 3.3:+70037108 | MS.gene75728:CDS |
ATCTGGGGAGCAGGTTTATG+CGG | 0.563462 | 3.3:+70039568 | MS.gene75728:CDS |
TGGTAGTGTTAGTGGTGCTA+AGG | 0.563632 | 3.3:+70036954 | MS.gene75728:CDS |
TGGTAGTGTTAGTGGTGCTA+AGG | 0.563632 | 3.3:+70037170 | MS.gene75728:CDS |
GATATCCATTTCACTATCCA+AGG | 0.565174 | 3.3:+70038236 | MS.gene75728:CDS |
GCGTTACTTCTCTGTCTCCC+AGG | 0.565373 | 3.3:-70042021 | None:intergenic |
CTGATGGATCCATCATGAAT+GGG | 0.565485 | 3.3:+70042933 | MS.gene75728:CDS |
TGCCAGCTCCGTCAGAAGAT+GGG | 0.565816 | 3.3:+70043389 | MS.gene75728:CDS |
TACCATCAAGAAAATTCTTG+AGG | 0.566360 | 3.3:+70039142 | MS.gene75728:CDS |
CGTACATGGAAGGAAGGGGA+GGG | 0.566520 | 3.3:-70036249 | None:intergenic |
ATGATTACGGCAATAGCGAA+GGG | 0.568939 | 3.3:+70041763 | MS.gene75728:CDS |
TCCACCAATGCCCTGCCCAA+TGG | 0.570333 | 3.3:-70037909 | None:intergenic |
GTTGCATTTGTTGTGCATGT+GGG | 0.571683 | 3.3:+70042863 | MS.gene75728:CDS |
CATAAAAGTAGCAAAGCTCC+TGG | 0.572073 | 3.3:+70037789 | MS.gene75728:CDS |
TGCTTGAGGAACTGAAGTAC+AGG | 0.575597 | 3.3:+70038983 | MS.gene75728:CDS |
CATTATCTGAGCCACAAACC+GGG | 0.576494 | 3.3:+70039240 | MS.gene75728:CDS |
GTCCTTCACTTGCAGACTAG+AGG | 0.577647 | 3.3:+70042484 | MS.gene75728:CDS |
TGACTGTAACCCATTCATGA+TGG | 0.578512 | 3.3:-70042942 | None:intergenic |
AATTGTTATCGGCGTCGGGG+AGG | 0.578824 | 3.3:-70036153 | None:intergenic |
ATCCTCTAGTCTGCAAGTGA+AGG | 0.580814 | 3.3:-70042486 | None:intergenic |
CTTGTATAACAAGAATGAAG+TGG | 0.581521 | 3.3:+70037821 | MS.gene75728:CDS |
ATATTCCTTGTGCAGATCTG+GGG | 0.583597 | 3.3:+70039553 | MS.gene75728:intron |
AGAAGATAATGGCAACCACT+TGG | 0.584421 | 3.3:-70042515 | None:intergenic |
TATTGTTTCGGAGTATCAGA+AGG | 0.586541 | 3.3:+70041719 | MS.gene75728:CDS |
AGATCGTACATGGAAGGAAG+GGG | 0.587741 | 3.3:-70036253 | None:intergenic |
TCGTACATGGAAGGAAGGGG+AGG | 0.589194 | 3.3:-70036250 | None:intergenic |
CTATCCAAGGATGCACATCA+AGG | 0.589712 | 3.3:+70038249 | MS.gene75728:CDS |
CCAGATATTGGTAGTCGTAG+TGG | 0.590325 | 3.3:+70036724 | MS.gene75728:CDS |
CGGAGCTGGCAGCATTTCTG+AGG | 0.590348 | 3.3:-70043377 | None:intergenic |
GAGAATAAAGTTGTGCATAG+TGG | 0.590470 | 3.3:+70036934 | MS.gene75728:CDS |
GAGAATAAAGTTGTGCATAG+TGG | 0.590470 | 3.3:+70037150 | MS.gene75728:CDS |
GACTGTATCAAACGTGCTTG+AGG | 0.593902 | 3.3:+70038969 | MS.gene75728:CDS |
AATAGATAACGACCTCCCAC+TGG | 0.595561 | 3.3:-70037433 | None:intergenic |
AGTGTCATTTGATGTACCAA+AGG | 0.597531 | 3.3:-70037615 | None:intergenic |
ATAATAAGCAGCCTGCTAGT+GGG | 0.598295 | 3.3:+70037964 | MS.gene75728:CDS |
GAGAGTAAATTTGTGCAACC+AGG | 0.600163 | 3.3:+70037366 | MS.gene75728:CDS |
CGTCGGAGTTGATTTGCCAC+CGG | 0.600580 | 3.3:-70036177 | None:intergenic |
ATGAGAGATGCTATCCAGCT+AGG | 0.600663 | 3.3:+70038929 | MS.gene75728:CDS |
ACGTGGAAAACCATTGGGCA+GGG | 0.603971 | 3.3:+70037899 | MS.gene75728:CDS |
TTAGTTGGTAGGTTGAACAT+GGG | 0.606230 | 3.3:+70036907 | MS.gene75728:CDS |
TTAGTTGGTAGGTTGAACAT+GGG | 0.606230 | 3.3:+70037123 | MS.gene75728:CDS |
AGGAGAAGATCGTACATGGA+AGG | 0.606968 | 3.3:-70036259 | None:intergenic |
ATAGAGCTCATTGGGCAGAT+CGG | 0.606980 | 3.3:+70039751 | MS.gene75728:CDS |
ACATCCGAATCAGAGCCAAA+TGG | 0.607036 | 3.3:-70042463 | None:intergenic |
GAGAAGTGAATCATGGCCAC+CGG | 0.607775 | 3.3:+70039117 | MS.gene75728:CDS |
ATCCATCTATTGACACAGCA+CGG | 0.609149 | 3.3:+70038517 | MS.gene75728:CDS |
ATGCATTTGAAAGCCAAAGG+TGG | 0.609685 | 3.3:-70039892 | None:intergenic |
GTGATGCGTTGAAACGCGCT+AGG | 0.611592 | 3.3:+70037460 | MS.gene75728:CDS |
CCTTATATTAGGTTAAGCAG+TGG | 0.612044 | 3.3:+70040087 | MS.gene75728:intron |
ACTTCATTCTTGTTATACAA+GGG | 0.612276 | 3.3:-70037819 | None:intergenic |
GGCTCTGATAGTAATGGTAT+GGG | 0.615727 | 3.3:+70038481 | MS.gene75728:CDS |
GCAGATAATAGAGAAACTCA+AGG | 0.622491 | 3.3:+70043510 | MS.gene75728:intron |
TTTGAGTCCAGAAGCACCAG+AGG | 0.625357 | 3.3:-70038197 | None:intergenic |
CATCAAGAAAATTCTTGAGG+GGG | 0.625750 | 3.3:+70039145 | MS.gene75728:CDS |
ATGCGTTGAAACGCGCTAGG+AGG | 0.627260 | 3.3:+70037463 | MS.gene75728:CDS |
AATAACATTTGAAGTGTCGT+CGG | 0.629896 | 3.3:-70036194 | None:intergenic |
GGAGCGTACATATTCCATGA+TGG | 0.630123 | 3.3:+70038460 | MS.gene75728:CDS |
CCATCAAGAAAATTCTTGAG+GGG | 0.633200 | 3.3:+70039144 | MS.gene75728:CDS |
CTATCTATTACCTGTAAACG+AGG | 0.635769 | 3.3:-70036619 | None:intergenic |
ATTGCTAGCCCATCTTCTGA+CGG | 0.636898 | 3.3:-70043397 | None:intergenic |
CCTAATGGCAGATATGACTC+CGG | 0.636920 | 3.3:+70041830 | MS.gene75728:CDS |
ATAGCGTCAGGAACTGTCAG+AGG | 0.638897 | 3.3:+70042411 | MS.gene75728:intron |
ACAAACCGGGAATCAGAGCA+GGG | 0.642447 | 3.3:+70039253 | MS.gene75728:CDS |
TAATTACCGTAGATCCGGCA+AGG | 0.642794 | 3.3:-70043048 | None:intergenic |
TCTTCAAGAATGGATTCACG+TGG | 0.644634 | 3.3:+70037882 | MS.gene75728:CDS |
TGATCATGTGCTTGACAGTG+GGG | 0.648137 | 3.3:+70039217 | MS.gene75728:CDS |
ACTCTCACTTCTTTCAACAG+AGG | 0.651704 | 3.3:-70037577 | None:intergenic |
TTGAACATCTTGGTCACCAG+AGG | 0.654410 | 3.3:-70038054 | None:intergenic |
TAGCGTCAGGAACTGTCAGA+GGG | 0.654518 | 3.3:+70042412 | MS.gene75728:intron |
AATTCCAAACTGCCAGTGGG+AGG | 0.664894 | 3.3:+70037421 | MS.gene75728:CDS |
TTAAATTCCAAACTGCCAGT+GGG | 0.666155 | 3.3:+70037418 | MS.gene75728:CDS |
TGATTACGGCAATAGCGAAG+GGG | 0.679687 | 3.3:+70041764 | MS.gene75728:CDS |
GTTGTGAATGAAAGTGATTG+TGG | 0.680825 | 3.3:+70037765 | MS.gene75728:CDS |
GGTAATTGTTATCGGCGTCG+GGG | 0.682486 | 3.3:-70036156 | None:intergenic |
CTAGAGGATCTACTACCAAG+TGG | 0.692702 | 3.3:+70042500 | MS.gene75728:CDS |
GGATTGCATGAAGAAACTGT+TGG | 0.692759 | 3.3:+70036538 | MS.gene75728:CDS |
ATGTCACTCAGACCTGACAA+TGG | 0.698274 | 3.3:-70042703 | None:intergenic |
TTTGTGCAACCAGGTAGTGG+TGG | 0.698341 | 3.3:+70037375 | MS.gene75728:CDS |
TAAAGGACTTTGAAATGACG+CGG | 0.698771 | 3.3:-70037319 | None:intergenic |
GAATCGAAGAAATGTCAACA+TGG | 0.699408 | 3.3:+70036125 | None:intergenic |
TTTCTGAGGTGAGAACACTG+TGG | 0.717998 | 3.3:-70043363 | None:intergenic |
TGAATCATGATCAAACAATG+GGG | 0.725399 | 3.3:-70043005 | None:intergenic |
ACGCCGATAACAATTACCGG+TGG | 0.728353 | 3.3:+70036161 | MS.gene75728:CDS |
AATCTGTTGTAATATCAGAG+AGG | 0.730566 | 3.3:+70040112 | MS.gene75728:CDS |
TGTCATTTGATGTACCAAAG+GGG | 0.741422 | 3.3:-70037613 | None:intergenic |
AACCGGGAATCAGAGCAGGG+AGG | 0.760357 | 3.3:+70039256 | MS.gene75728:CDS |
TCTGAGGTGAGAACACTGTG+GGG | 0.762439 | 3.3:-70043361 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 70036136 | 70043570 | 70036136 | ID=MS.gene75728 |
chr3.3 | mRNA | 70036136 | 70043570 | 70036136 | ID=MS.gene75728.t1;Parent=MS.gene75728 |
chr3.3 | exon | 70036136 | 70036266 | 70036136 | ID=MS.gene75728.t1.exon1;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70036136 | 70036266 | 70036136 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70036405 | 70038089 | 70036405 | ID=MS.gene75728.t1.exon2;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70036405 | 70038089 | 70036405 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70038182 | 70038306 | 70038182 | ID=MS.gene75728.t1.exon3;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70038182 | 70038306 | 70038182 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70038418 | 70038566 | 70038418 | ID=MS.gene75728.t1.exon4;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70038418 | 70038566 | 70038418 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70038882 | 70039004 | 70038882 | ID=MS.gene75728.t1.exon5;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70038882 | 70039004 | 70038882 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70039109 | 70039306 | 70039109 | ID=MS.gene75728.t1.exon6;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70039109 | 70039306 | 70039109 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70039396 | 70039477 | 70039396 | ID=MS.gene75728.t1.exon7;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70039396 | 70039477 | 70039396 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70039568 | 70039618 | 70039568 | ID=MS.gene75728.t1.exon8;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70039568 | 70039618 | 70039568 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70039708 | 70039783 | 70039708 | ID=MS.gene75728.t1.exon9;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70039708 | 70039783 | 70039708 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70039878 | 70039989 | 70039878 | ID=MS.gene75728.t1.exon10;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70039878 | 70039989 | 70039878 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70040098 | 70040169 | 70040098 | ID=MS.gene75728.t1.exon11;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70040098 | 70040169 | 70040098 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70041698 | 70041893 | 70041698 | ID=MS.gene75728.t1.exon12;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70041698 | 70041893 | 70041698 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70041965 | 70042141 | 70041965 | ID=MS.gene75728.t1.exon13;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70041965 | 70042141 | 70041965 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70042415 | 70042557 | 70042415 | ID=MS.gene75728.t1.exon14;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70042415 | 70042557 | 70042415 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70042675 | 70042737 | 70042675 | ID=MS.gene75728.t1.exon15;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70042675 | 70042737 | 70042675 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70042850 | 70043063 | 70042850 | ID=MS.gene75728.t1.exon16;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70042850 | 70043063 | 70042850 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70043261 | 70043428 | 70043261 | ID=MS.gene75728.t1.exon17;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70043261 | 70043428 | 70043261 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
chr3.3 | exon | 70043514 | 70043570 | 70043514 | ID=MS.gene75728.t1.exon18;Parent=MS.gene75728.t1 |
chr3.3 | CDS | 70043514 | 70043570 | 70043514 | ID=cds.MS.gene75728.t1;Parent=MS.gene75728.t1 |
Gene Sequence |
Protein sequence |