Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75771.t1 | XP_003603582.1 | 98.9 | 439 | 5 | 0 | 1 | 439 | 1 | 439 | 6.80E-98 | 367.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75771.t1 | G7J2W4 | 98.9 | 439 | 5 | 0 | 1 | 439 | 1 | 439 | 4.9e-98 | 367.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049260 | MS.gene75771 | PPI |
| MS.gene75771 | MS.gene40923 | PPI |
| MS.gene98540 | MS.gene75771 | PPI |
| MS.gene90626 | MS.gene75771 | PPI |
| MS.gene81658 | MS.gene75771 | PPI |
| MS.gene81663 | MS.gene75771 | PPI |
| MS.gene81660 | MS.gene75771 | PPI |
| MS.gene75771 | MS.gene013282 | PPI |
| MS.gene06367 | MS.gene75771 | PPI |
| MS.gene29768 | MS.gene75771 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75771.t1 | MTR_3g109330 | 98.633 | 439 | 6 | 0 | 1 | 439 | 1 | 439 | 0.0 | 868 |
| MS.gene75771.t1 | MTR_3g109330 | 94.533 | 439 | 6 | 1 | 1 | 439 | 1 | 421 | 0.0 | 817 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75771.t1 | AT4G31340 | 58.435 | 409 | 164 | 4 | 31 | 439 | 35 | 437 | 7.91e-165 | 471 |
| MS.gene75771.t1 | AT2G24420 | 54.545 | 429 | 184 | 5 | 17 | 439 | 17 | 440 | 3.85e-160 | 459 |
| MS.gene75771.t1 | AT2G24420 | 54.545 | 429 | 184 | 5 | 17 | 439 | 17 | 440 | 3.85e-160 | 459 |
| MS.gene75771.t1 | AT4G31340 | 58.442 | 385 | 156 | 2 | 31 | 415 | 35 | 415 | 6.24e-155 | 445 |
| MS.gene75771.t1 | AT4G30090 | 30.446 | 404 | 214 | 6 | 40 | 437 | 44 | 386 | 1.87e-52 | 181 |
Find 99 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAATTGAGTTGATCTAAT+TGG | 0.198323 | 3.3:-89542162 | None:intergenic |
| AAGAAGGTTGTTCTCGCTTA+TGG | 0.201487 | 3.3:+89545228 | MS.gene75771:CDS |
| AAGTAACGAAGGAGAAAATT+AGG | 0.226102 | 3.3:-89542090 | None:intergenic |
| AAAAGGCACAAGCTGGAAAA+TGG | 0.236033 | 3.3:+89544607 | MS.gene75771:CDS |
| ACTCTAGCTATTAAGATAAT+AGG | 0.265678 | 3.3:-89546170 | None:intergenic |
| TATGCAGGCCTCTGCCCTTC+TGG | 0.268328 | 3.3:+89546142 | MS.gene75771:intron |
| GAAACTTATACCTGATAATA+AGG | 0.301355 | 3.3:-89545046 | None:intergenic |
| AACACAAGAATTGAAGAAAA+AGG | 0.318070 | 3.3:+89542494 | MS.gene75771:CDS |
| TTGGATTGATACCGAGGAAT+TGG | 0.318579 | 3.3:-89542189 | None:intergenic |
| GAATGAGGTTGCTTCTCTTC+AGG | 0.323946 | 3.3:+89542581 | MS.gene75771:CDS |
| ATTCTAGGCCCTAGAGAAAA+AGG | 0.331966 | 3.3:+89544590 | MS.gene75771:intron |
| ACCTCTTGCTACTAAAGAAT+TGG | 0.345133 | 3.3:+89546019 | MS.gene75771:CDS |
| GAATGCTACTCAACTTATCT+TGG | 0.345760 | 3.3:-89542548 | None:intergenic |
| ATCTAAGACTAACCAGAAAA+TGG | 0.347393 | 3.3:-89546201 | None:intergenic |
| TCTCGCTTATGGGAATTTCT+TGG | 0.348918 | 3.3:+89545239 | MS.gene75771:CDS |
| CTTCATGTTATCTACTTGTC+TGG | 0.380045 | 3.3:-89546431 | None:intergenic |
| ATGGTGCTTGGCTTCCTCCT+TGG | 0.385003 | 3.3:+89544251 | MS.gene75771:CDS |
| TATCATCTGCAGCAGCAAAA+AGG | 0.397213 | 3.3:+89546346 | MS.gene75771:intron |
| AGAAGGTTGTTCTCGCTTAT+GGG | 0.403445 | 3.3:+89545229 | MS.gene75771:CDS |
| ATGTGTAGATCCTTATTATC+AGG | 0.406758 | 3.3:+89545036 | MS.gene75771:CDS |
| GATACCGAGGAATTGGATCT+TGG | 0.433047 | 3.3:-89542182 | None:intergenic |
| GTCATTGGATGCCGAGGAGC+AGG | 0.448017 | 3.3:+89542776 | MS.gene75771:CDS |
| GGGAGCAAGTGCGTCCTTTG+AGG | 0.460893 | 3.3:-89544993 | None:intergenic |
| AGAAAGTGAACTGGGAATCT+CGG | 0.463402 | 3.3:+89542958 | MS.gene75771:CDS |
| AAAGGCACAAGCTGGAAAAT+GGG | 0.463620 | 3.3:+89544608 | MS.gene75771:CDS |
| GACCACTGTTCTTTCACAGC+TGG | 0.466702 | 3.3:-89544902 | None:intergenic |
| GTTGGAAGTGATATCTCAAA+AGG | 0.468095 | 3.3:+89544426 | MS.gene75771:CDS |
| CAGTGCTTGCACATGAGGTT+CGG | 0.473641 | 3.3:-89544942 | None:intergenic |
| TAGCAAGCCATACATTGATC+AGG | 0.474392 | 3.3:+89545146 | MS.gene75771:CDS |
| AGTAACGAAGGAGAAAATTA+GGG | 0.474409 | 3.3:-89542089 | None:intergenic |
| AGTCCGTGGCTGAGAGTCAT+TGG | 0.476512 | 3.3:+89544383 | MS.gene75771:intron |
| AAAACAGTGAGAAAGTGAAC+TGG | 0.480727 | 3.3:+89542949 | MS.gene75771:CDS |
| AGAACAACCTTCTTTGTGTA+GGG | 0.494541 | 3.3:-89545219 | None:intergenic |
| GAAGTCAGTGCTTGCACATG+AGG | 0.495088 | 3.3:-89544947 | None:intergenic |
| TTCGATGGAAACATCGGCCT+CGG | 0.496792 | 3.3:-89542113 | None:intergenic |
| TGTACACTATATTCGTAGTA+AGG | 0.505415 | 3.3:+89544279 | MS.gene75771:CDS |
| GAAAGTGAACTGGGAATCTC+GGG | 0.506911 | 3.3:+89542959 | MS.gene75771:CDS |
| CATTCAATCCTTGCAGAATG+AGG | 0.508270 | 3.3:+89542566 | MS.gene75771:CDS |
| ATGATCAGACTCATGGTGCT+TGG | 0.513875 | 3.3:+89544239 | MS.gene75771:intron |
| ACGTCTCTTGGACAGTAGCT+TGG | 0.519002 | 3.3:-89545974 | None:intergenic |
| TTGCTACTAAAGAATTGGAA+TGG | 0.520379 | 3.3:+89546024 | MS.gene75771:CDS |
| TATTTAGGAAGAAATGTTGA+AGG | 0.522472 | 3.3:+89543846 | MS.gene75771:intron |
| AGATAATAGGCAAGGCCAGA+AGG | 0.525870 | 3.3:-89546157 | None:intergenic |
| TCCAATTCTTTAGTAGCAAG+AGG | 0.528573 | 3.3:-89546020 | None:intergenic |
| AGCCACTGCATATCATCGCC+AGG | 0.534905 | 3.3:+89545266 | MS.gene75771:CDS |
| GTAGCGACCTGATCAATGTA+TGG | 0.537102 | 3.3:-89545153 | None:intergenic |
| AGCTTTACGACGAGTGTGGT+GGG | 0.538967 | 3.3:-89546396 | None:intergenic |
| TGCCGGTGAACTACAGAAGC+AGG | 0.548974 | 3.3:+89542818 | MS.gene75771:CDS |
| AGGCAAGGCCAGAAGGGCAG+AGG | 0.549576 | 3.3:-89546150 | None:intergenic |
| TGAACATGGGAAGCCTCTGT+TGG | 0.550076 | 3.3:+89544408 | MS.gene75771:CDS |
| GGAAAGGCTCATGCACGTGC+CGG | 0.552710 | 3.3:+89542801 | MS.gene75771:CDS |
| GAGAGTCATTGGAATGAACA+TGG | 0.556843 | 3.3:+89544394 | MS.gene75771:CDS |
| TTTCTCCTTCGTTACTTCCG+AGG | 0.559530 | 3.3:+89542096 | MS.gene75771:CDS |
| TGCCGAGGAGCAGGTTGGAA+AGG | 0.563199 | 3.3:+89542785 | MS.gene75771:CDS |
| ACAGGTTCAAAAGATAAATG+AGG | 0.567365 | 3.3:+89543679 | MS.gene75771:intron |
| TAGCTTTACGACGAGTGTGG+TGG | 0.567556 | 3.3:-89546397 | None:intergenic |
| AGAATCTTCGATGGAAACAT+CGG | 0.571464 | 3.3:-89542119 | None:intergenic |
| GAGAACAACCTTCTTTGTGT+AGG | 0.572587 | 3.3:-89545220 | None:intergenic |
| GATAATAGGCAAGGCCAGAA+GGG | 0.576847 | 3.3:-89546156 | None:intergenic |
| ATAGCGAAGACGAAAAGCTT+CGG | 0.580873 | 3.3:-89542058 | None:intergenic |
| GACCTGCTTCTGTAGTTCAC+CGG | 0.583896 | 3.3:-89542820 | None:intergenic |
| TGGGTGTTTCCACTTCGAGC+GGG | 0.584384 | 3.3:-89546377 | None:intergenic |
| GCTTAGCTTTACGACGAGTG+TGG | 0.588964 | 3.3:-89546400 | None:intergenic |
| AATTCCAAGATCCAATTCCT+CGG | 0.589768 | 3.3:+89542178 | MS.gene75771:CDS |
| AAAATGGGCTGAACCTCACG+TGG | 0.592865 | 3.3:+89544623 | MS.gene75771:CDS |
| ACTTGCTCCCCACTTGAACA+AGG | 0.596960 | 3.3:+89545006 | MS.gene75771:CDS |
| AGCCTTTCCAACCTGCTCCT+CGG | 0.598082 | 3.3:-89542787 | None:intergenic |
| TGAGATATCACTTCCAACAG+AGG | 0.601782 | 3.3:-89544421 | None:intergenic |
| AGCTATTAAGATAATAGGCA+AGG | 0.602545 | 3.3:-89546165 | None:intergenic |
| TCTGAAGCCCTACACAAAGA+AGG | 0.603321 | 3.3:+89545212 | MS.gene75771:CDS |
| ACTTGTATATTCTCAACATG+AGG | 0.604598 | 3.3:-89545186 | None:intergenic |
| GCAAGTAAACCCGCTCGAAG+TGG | 0.604975 | 3.3:+89546368 | MS.gene75771:CDS |
| TGAAGTTTACAAGTCCTCAA+AGG | 0.607940 | 3.3:+89544979 | MS.gene75771:CDS |
| GAAGGAGAAAATTAGGGCAA+CGG | 0.609746 | 3.3:-89542083 | None:intergenic |
| TTGGATGCCGAGGAGCAGGT+TGG | 0.613773 | 3.3:+89542780 | MS.gene75771:CDS |
| AGAGGAATCAGAATCTTCGA+TGG | 0.619773 | 3.3:-89542128 | None:intergenic |
| AAAAGGGTCATTGGATGCCG+AGG | 0.621224 | 3.3:+89542770 | MS.gene75771:CDS |
| TGATTTGAACTCAAAACTAG+AGG | 0.624974 | 3.3:+89543007 | MS.gene75771:CDS |
| AAACAGTGAGAAAGTGAACT+GGG | 0.625922 | 3.3:+89542950 | MS.gene75771:CDS |
| AATGTTGAAGGCAAAGCTAG+AGG | 0.629492 | 3.3:+89543858 | MS.gene75771:CDS |
| GTGGGTGTTTCCACTTCGAG+CGG | 0.630465 | 3.3:-89546378 | None:intergenic |
| CATTGATCAGGTCGCTACTG+CGG | 0.635282 | 3.3:+89545158 | MS.gene75771:CDS |
| ATCGGCCTCGGAAGTAACGA+AGG | 0.639450 | 3.3:-89542101 | None:intergenic |
| TAATTGGATCTTAAGAGCAG+AGG | 0.640351 | 3.3:-89542146 | None:intergenic |
| AGAAGCAACCTCATTCTGCA+AGG | 0.645724 | 3.3:-89542574 | None:intergenic |
| TCATGTTGAGAATATACAAG+TGG | 0.650587 | 3.3:+89545188 | MS.gene75771:CDS |
| ATTCCAATGACTCTCAGCCA+CGG | 0.657274 | 3.3:-89544386 | None:intergenic |
| ATATAGTGTACAGCAAGCCA+AGG | 0.657714 | 3.3:-89544268 | None:intergenic |
| GGTGTTAATGATCAGACTCA+TGG | 0.658662 | 3.3:+89544232 | MS.gene75771:intron |
| TAGTGTACAGCAAGCCAAGG+AGG | 0.659126 | 3.3:-89544265 | None:intergenic |
| GCGAAGACGAAAAGCTTCGG+AGG | 0.668584 | 3.3:-89542055 | None:intergenic |
| AGAGTCATTGGAATGAACAT+GGG | 0.671207 | 3.3:+89544395 | MS.gene75771:CDS |
| GTGGTCTGTGGTGAAAACAA+AGG | 0.688492 | 3.3:+89544919 | MS.gene75771:CDS |
| CAAAGCAAAAGAGCTGAGCG+AGG | 0.693194 | 3.3:+89543888 | MS.gene75771:CDS |
| AACCTGGCGATGATATGCAG+TGG | 0.697941 | 3.3:-89545268 | None:intergenic |
| ACGTGCTCTTAAAGTCGCCG+AGG | 0.698226 | 3.3:+89543730 | MS.gene75771:CDS |
| TGTGAAAGAACAGTGGTCTG+TGG | 0.702105 | 3.3:+89544907 | MS.gene75771:CDS |
| TTCCAGCTGTGAAAGAACAG+TGG | 0.708355 | 3.3:+89544900 | MS.gene75771:CDS |
| ACTCGTCGTAAAGCTAAGCG+AGG | 0.711196 | 3.3:+89546404 | MS.gene75771:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAAAATAATAATTTTGAA+GGG | - | chr3.3:89542743-89542762 | None:intergenic | 10.0% |
| !! | AAAAAAAAACAATTCAGTAT+GGG | - | chr3.3:89546247-89546266 | None:intergenic | 15.0% |
| !! | ACTAAAATATAAATATGGTT+AGG | + | chr3.3:89546091-89546110 | MS.gene75771:intron | 15.0% |
| !! | ATTCAAAAAAATAATACAAG+AGG | - | chr3.3:89545333-89545352 | None:intergenic | 15.0% |
| !!! | ATATAAGGAATTTTTTTACT+AGG | - | chr3.3:89544109-89544128 | None:intergenic | 15.0% |
| !!! | CTTAATTTTTTTTCATTAAG+TGG | - | chr3.3:89543545-89543564 | None:intergenic | 15.0% |
| !!! | GGAAAAAATAATAATTTTGA+AGG | - | chr3.3:89542744-89542763 | None:intergenic | 15.0% |
| !!! | TATCAAAACATAATTTTGTT+AGG | + | chr3.3:89543628-89543647 | MS.gene75771:intron | 15.0% |
| !!! | TCTTGTATTATTTTTTTGAA+TGG | + | chr3.3:89545332-89545351 | MS.gene75771:intron | 15.0% |
| !!! | TTATTTTATAGTAAACTATC+AGG | - | chr3.3:89544159-89544178 | None:intergenic | 15.0% |
| !!! | TTCTATTGATATTCTTATTT+AGG | + | chr3.3:89543831-89543850 | MS.gene75771:intron | 15.0% |
| !! | AAAAAAAAACTTGGTTCAAT+CGG | - | chr3.3:89542290-89542309 | None:intergenic | 20.0% |
| !! | AAAATATAAATATGGTTAGG+TGG | + | chr3.3:89546094-89546113 | MS.gene75771:intron | 20.0% |
| !! | AAATGCTTCAAAAATAATAC+AGG | - | chr3.3:89542665-89542684 | None:intergenic | 20.0% |
| !! | AATAAACTGACATTATTAGA+TGG | - | chr3.3:89543609-89543628 | None:intergenic | 20.0% |
| !! | AGATAAATATGATAGACTTA+CGG | - | chr3.3:89544661-89544680 | None:intergenic | 20.0% |
| !! | AGCAGAAATATATAAATAGT+AGG | - | chr3.3:89545307-89545326 | None:intergenic | 20.0% |
| !! | ATAAAATAAACTATCAGACA+AGG | + | chr3.3:89544170-89544189 | MS.gene75771:intron | 20.0% |
| !! | ATATCAAATTGAAATTATGC+AGG | + | chr3.3:89546127-89546146 | MS.gene75771:intron | 20.0% |
| !! | ATTATTAGATGATGTGAATA+AGG | - | chr3.3:89544345-89544364 | None:intergenic | 20.0% |
| !! | CAACATTTAAAAAGATTACA+TGG | - | chr3.3:89543941-89543960 | None:intergenic | 20.0% |
| !! | GAAAAAAAAACAATTCAGTA+TGG | - | chr3.3:89546248-89546267 | None:intergenic | 20.0% |
| !! | TAAAAAGATTACATGGTTTA+GGG | - | chr3.3:89543934-89543953 | None:intergenic | 20.0% |
| !! | TACCAATATCACATAATATA+AGG | - | chr3.3:89544124-89544143 | None:intergenic | 20.0% |
| !! | TTAAAAAGATTACATGGTTT+AGG | - | chr3.3:89543935-89543954 | None:intergenic | 20.0% |
| !! | TTCATCTATATACAAGAAAA+TGG | - | chr3.3:89544053-89544072 | None:intergenic | 20.0% |
| !! | TTCCTTATATTATGTGATAT+TGG | + | chr3.3:89544119-89544138 | MS.gene75771:intron | 20.0% |
| !!! | AATTATGATAACTGAGATTT+TGG | - | chr3.3:89542211-89542230 | None:intergenic | 20.0% |
| !!! | AGATTCTATTTTCAATTATC+TGG | - | chr3.3:89545584-89545603 | None:intergenic | 20.0% |
| !!! | ATAATCATGGATAACTTTTA+AGG | - | chr3.3:89543979-89543998 | None:intergenic | 20.0% |
| !!! | GTATTATTTTTGAAGCATTT+TGG | + | chr3.3:89542665-89542684 | MS.gene75771:intron | 20.0% |
| !!! | TATTATGTGATATTGGTAAT+TGG | + | chr3.3:89544126-89544145 | MS.gene75771:intron | 20.0% |
| !!! | TATTTTTTCCTCAGAAAAAA+GGG | + | chr3.3:89542754-89542773 | MS.gene75771:intron | 20.0% |
| !!! | TTATTTTTTCCTCAGAAAAA+AGG | + | chr3.3:89542753-89542772 | MS.gene75771:intron | 20.0% |
| !!! | TTTTATTAATTGATGCTTAC+TGG | + | chr3.3:89544211-89544230 | MS.gene75771:intron | 20.0% |
| !!! | TTTTTTTTCATTAAGTGGTT+AGG | - | chr3.3:89543540-89543559 | None:intergenic | 20.0% |
| ! | AAAAAGATTACATGGTTTAG+GGG | - | chr3.3:89543933-89543952 | None:intergenic | 25.0% |
| ! | AACACAAGAATTGAAGAAAA+AGG | + | chr3.3:89542494-89542513 | MS.gene75771:CDS | 25.0% |
| ! | ACTCTAGCTATTAAGATAAT+AGG | - | chr3.3:89546173-89546192 | None:intergenic | 25.0% |
| ! | CAAATACAACTAGAAATATC+AGG | - | chr3.3:89546292-89546311 | None:intergenic | 25.0% |
| ! | CTTCAATAAATTATAGATCC+AGG | + | chr3.3:89544498-89544517 | MS.gene75771:intron | 25.0% |
| ! | GAAACTTATACCTGATAATA+AGG | - | chr3.3:89545049-89545068 | None:intergenic | 25.0% |
| ! | GGCTAGTAATTTACAAATTT+AGG | + | chr3.3:89542396-89542415 | MS.gene75771:intron | 25.0% |
| ! | TAAATAAAATCACACATTGC+AGG | - | chr3.3:89545527-89545546 | None:intergenic | 25.0% |
| ! | TATTTAGGAAGAAATGTTGA+AGG | + | chr3.3:89543846-89543865 | MS.gene75771:intron | 25.0% |
| ! | TCAATTAGTTGAAATTACTG+AGG | + | chr3.3:89542363-89542382 | MS.gene75771:intron | 25.0% |
| ! | TCTTGTATATAGATGAATGA+AGG | + | chr3.3:89544056-89544075 | MS.gene75771:intron | 25.0% |
| ! | TTGAAAATAGAATCTTGAGT+TGG | + | chr3.3:89545589-89545608 | MS.gene75771:intron | 25.0% |
| ! | TTTAAGCAAATAACAACAAG+TGG | - | chr3.3:89542720-89542739 | None:intergenic | 25.0% |
| !! | AATTACTGAGGAAATTTTTG+TGG | + | chr3.3:89542375-89542394 | MS.gene75771:intron | 25.0% |
| !! | ATGAATCTTTTTCTCTAACT+TGG | - | chr3.3:89542988-89543007 | None:intergenic | 25.0% |
| !! | CTTTCATACTTTTGATCTTT+AGG | + | chr3.3:89544679-89544698 | MS.gene75771:intron | 25.0% |
| !! | GTTTGTTTATGTTTTTCTTG+AGG | + | chr3.3:89545089-89545108 | MS.gene75771:intron | 25.0% |
| !! | TCTTTTCATGATATGCTTTT+TGG | + | chr3.3:89545734-89545753 | MS.gene75771:intron | 25.0% |
| !! | TGAAGTAAATCTGAGTTTTA+TGG | + | chr3.3:89543071-89543090 | MS.gene75771:intron | 25.0% |
| !!! | GAATTGTCTTTTGTTATTCA+AGG | + | chr3.3:89545950-89545969 | MS.gene75771:intron | 25.0% |
| !!! | TCCTAGTTTGTTAAATACTT+GGG | + | chr3.3:89544823-89544842 | MS.gene75771:intron | 25.0% |
| !!! | TTAGGGATTTTTCAATCATT+AGG | + | chr3.3:89542630-89542649 | MS.gene75771:intron | 25.0% |
| AAAAAGGATCAAGTAATTGC+AGG | + | chr3.3:89542510-89542529 | MS.gene75771:CDS | 30.0% | |
| AAGTAACGAAGGAGAAAATT+AGG | - | chr3.3:89542093-89542112 | None:intergenic | 30.0% | |
| ACAACAACAACAAATACAAG+AGG | - | chr3.3:89545478-89545497 | None:intergenic | 30.0% | |
| ACAGGTTCAAAAGATAAATG+AGG | + | chr3.3:89543679-89543698 | MS.gene75771:intron | 30.0% | |
| ACTTGTATATTCTCAACATG+AGG | - | chr3.3:89545189-89545208 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAATTAAACC+TGG | - | chr3.3:89544519-89544538 | None:intergenic | 30.0% | |
| AGACAATTCAACACTCAAAA+AGG | - | chr3.3:89545939-89545958 | None:intergenic | 30.0% | |
| AGCTATTAAGATAATAGGCA+AGG | - | chr3.3:89546168-89546187 | None:intergenic | 30.0% | |
| AGTAACGAAGGAGAAAATTA+GGG | - | chr3.3:89542092-89542111 | None:intergenic | 30.0% | |
| AGTTTCTTCATTGAACTGTA+TGG | + | chr3.3:89545063-89545082 | MS.gene75771:intron | 30.0% | |
| ATGTGTAGATCCTTATTATC+AGG | + | chr3.3:89545036-89545055 | MS.gene75771:CDS | 30.0% | |
| ATTGCAACATGATATAGACA+TGG | + | chr3.3:89545759-89545778 | MS.gene75771:intron | 30.0% | |
| ATTTCAAAGAATAAGCAGTG+AGG | - | chr3.3:89545849-89545868 | None:intergenic | 30.0% | |
| CACAAAATGATAAGCAGAAA+GGG | - | chr3.3:89545791-89545810 | None:intergenic | 30.0% | |
| CAGATAAAAAAAGTTAGCAG+AGG | - | chr3.3:89543389-89543408 | None:intergenic | 30.0% | |
| CATTTCTTCAGTTGAAAACA+GGG | - | chr3.3:89544878-89544897 | None:intergenic | 30.0% | |
| GATTGAAAAATCCCTAAAGA+GGG | - | chr3.3:89542627-89542646 | None:intergenic | 30.0% | |
| GTGATGTCATAATATCAAGT+TGG | - | chr3.3:89545676-89545695 | None:intergenic | 30.0% | |
| TATTAGTTCCAGATCTTGAA+CGG | + | chr3.3:89545872-89545891 | MS.gene75771:intron | 30.0% | |
| TCACAAAATGATAAGCAGAA+AGG | - | chr3.3:89545792-89545811 | None:intergenic | 30.0% | |
| TCATGTTGAGAATATACAAG+TGG | + | chr3.3:89545188-89545207 | MS.gene75771:CDS | 30.0% | |
| TGAGCGAGGTAATAATTTAT+TGG | + | chr3.3:89543902-89543921 | MS.gene75771:intron | 30.0% | |
| TGATTGAAAAATCCCTAAAG+AGG | - | chr3.3:89542628-89542647 | None:intergenic | 30.0% | |
| TGATTTGAACTCAAAACTAG+AGG | + | chr3.3:89543007-89543026 | MS.gene75771:CDS | 30.0% | |
| TGTACACTATATTCGTAGTA+AGG | + | chr3.3:89544279-89544298 | MS.gene75771:CDS | 30.0% | |
| TTGACTAGATTTCAGATTGT+GGG | - | chr3.3:89545651-89545670 | None:intergenic | 30.0% | |
| TTGCTACTAAAGAATTGGAA+TGG | + | chr3.3:89546024-89546043 | MS.gene75771:CDS | 30.0% | |
| TTTCAAAGAATAAGCAGTGA+GGG | - | chr3.3:89545848-89545867 | None:intergenic | 30.0% | |
| TTTGACTAGATTTCAGATTG+TGG | - | chr3.3:89545652-89545671 | None:intergenic | 30.0% | |
| ! | AACTTTCACATTGCCTATTT+TGG | + | chr3.3:89543441-89543460 | MS.gene75771:intron | 30.0% |
| ! | ACTTTCACATTGCCTATTTT+GGG | + | chr3.3:89543442-89543461 | MS.gene75771:intron | 30.0% |
| ! | ATCTAAGACTAACCAGAAAA+TGG | - | chr3.3:89546204-89546223 | None:intergenic | 30.0% |
| ! | CTGTTTTCAACTGAAGAAAT+GGG | + | chr3.3:89544877-89544896 | MS.gene75771:intron | 30.0% |
| ! | TAGTCTGAAATTCTTAATGC+AGG | + | chr3.3:89542896-89542915 | MS.gene75771:intron | 30.0% |
| ! | TCATTTATCTTTTGAACCTG+TGG | - | chr3.3:89543680-89543699 | None:intergenic | 30.0% |
| ! | TCTGCTTATCATTTTGTGAT+GGG | + | chr3.3:89545793-89545812 | MS.gene75771:intron | 30.0% |
| ! | TTCTGCTTATCATTTTGTGA+TGG | + | chr3.3:89545792-89545811 | MS.gene75771:intron | 30.0% |
| ! | TTTGTGAATCGTGATTTTTG+TGG | + | chr3.3:89542429-89542448 | MS.gene75771:intron | 30.0% |
| !! | CTCCTAGTTTGTTAAATACT+TGG | + | chr3.3:89544822-89544841 | MS.gene75771:intron | 30.0% |
| !! | TGGAATTGAGTTGATCTAAT+TGG | - | chr3.3:89542165-89542184 | None:intergenic | 30.0% |
| !! | TTTTCTTTTTTGTTAGTCCG+TGG | + | chr3.3:89544369-89544388 | MS.gene75771:intron | 30.0% |
| !!! | AGTTTTTTTTCTCCTTCATC+CGG | + | chr3.3:89545382-89545401 | MS.gene75771:intron | 30.0% |
| !!! | GGATAACTTTTAAGGTTTTC+TGG | - | chr3.3:89543971-89543990 | None:intergenic | 30.0% |
| !!! | TAACTTTTAAGGTTTTCTGG+TGG | - | chr3.3:89543968-89543987 | None:intergenic | 30.0% |
| AAAACAAACCGTTCAAGATC+TGG | - | chr3.3:89545883-89545902 | None:intergenic | 35.0% | |
| AAAACAGTGAGAAAGTGAAC+TGG | + | chr3.3:89542949-89542968 | MS.gene75771:CDS | 35.0% | |
| AAACAGTGAGAAAGTGAACT+GGG | + | chr3.3:89542950-89542969 | MS.gene75771:CDS | 35.0% | |
| AATAGGCAATGTGAAAGTTG+TGG | - | chr3.3:89543440-89543459 | None:intergenic | 35.0% | |
| AATCATTACACCTGCACATT+TGG | - | chr3.3:89543502-89543521 | None:intergenic | 35.0% | |
| AATTCCAAGATCCAATTCCT+CGG | + | chr3.3:89542178-89542197 | MS.gene75771:CDS | 35.0% | |
| ACAACAAATACAAGAGGATC+AGG | - | chr3.3:89545472-89545491 | None:intergenic | 35.0% | |
| ACCTCTTGCTACTAAAGAAT+TGG | + | chr3.3:89546019-89546038 | MS.gene75771:CDS | 35.0% | |
| ACGATGAGGAAACATTAGTA+TGG | - | chr3.3:89545698-89545717 | None:intergenic | 35.0% | |
| ACTAATGTTTCCTCATCGTA+GGG | + | chr3.3:89545699-89545718 | MS.gene75771:intron | 35.0% | |
| AGAACAACCTTCTTTGTGTA+GGG | - | chr3.3:89545222-89545241 | None:intergenic | 35.0% | |
| AGAATCTTCGATGGAAACAT+CGG | - | chr3.3:89542122-89542141 | None:intergenic | 35.0% | |
| AGAGTCATTGGAATGAACAT+GGG | + | chr3.3:89544395-89544414 | MS.gene75771:CDS | 35.0% | |
| ATAGGCAATGTGAAAGTTGT+GGG | - | chr3.3:89543439-89543458 | None:intergenic | 35.0% | |
| ATCAGGAGTAAGTGCATATA+TGG | - | chr3.3:89546275-89546294 | None:intergenic | 35.0% | |
| CATGATTATTACCAACAGTG+TGG | + | chr3.3:89543990-89544009 | MS.gene75771:intron | 35.0% | |
| CCAATGTTGAAACTCCTAAA+TGG | - | chr3.3:89544795-89544814 | None:intergenic | 35.0% | |
| CCATTTAGGAGTTTCAACAT+TGG | + | chr3.3:89544792-89544811 | MS.gene75771:intron | 35.0% | |
| CCATTTCTTCAGTTGAAAAC+AGG | - | chr3.3:89544879-89544898 | None:intergenic | 35.0% | |
| CGGGTAAAACAAACAAATTG+TGG | - | chr3.3:89544752-89544771 | None:intergenic | 35.0% | |
| GAATGCTACTCAACTTATCT+TGG | - | chr3.3:89542551-89542570 | None:intergenic | 35.0% | |
| GACACGTTAATAAAGCAATG+AGG | - | chr3.3:89543273-89543292 | None:intergenic | 35.0% | |
| GAGTAAGTGCATATATGGAA+AGG | - | chr3.3:89546270-89546289 | None:intergenic | 35.0% | |
| GCCCAAGTATTTAACAAACT+AGG | - | chr3.3:89544827-89544846 | None:intergenic | 35.0% | |
| GTTGGAAGTGATATCTCAAA+AGG | + | chr3.3:89544426-89544445 | MS.gene75771:CDS | 35.0% | |
| TAAATGGTCAACAAGCTATC+AGG | - | chr3.3:89544779-89544798 | None:intergenic | 35.0% | |
| TAATTGGATCTTAAGAGCAG+AGG | - | chr3.3:89542149-89542168 | None:intergenic | 35.0% | |
| TACTAATGTTTCCTCATCGT+AGG | + | chr3.3:89545698-89545717 | MS.gene75771:intron | 35.0% | |
| TCCAATTCTTTAGTAGCAAG+AGG | - | chr3.3:89546023-89546042 | None:intergenic | 35.0% | |
| TCTGGTGTAGATATACAGTA+TGG | - | chr3.3:89545566-89545585 | None:intergenic | 35.0% | |
| TGAAGTTTACAAGTCCTCAA+AGG | + | chr3.3:89544979-89544998 | MS.gene75771:CDS | 35.0% | |
| TTCCTAAATCGATGTTACTG+TGG | + | chr3.3:89542329-89542348 | MS.gene75771:intron | 35.0% | |
| ! | CCTGTTTTCAACTGAAGAAA+TGG | + | chr3.3:89544876-89544895 | MS.gene75771:intron | 35.0% |
| ! | TCTCGTCTTTTTGCAAAATG+AGG | + | chr3.3:89543225-89543244 | MS.gene75771:intron | 35.0% |
| ! | TTTCTTGAGGTATTCTCAAC+CGG | + | chr3.3:89545102-89545121 | MS.gene75771:intron | 35.0% |
| ! | TTTTCACTAGACCCTCTTTA+GGG | + | chr3.3:89542613-89542632 | MS.gene75771:intron | 35.0% |
| ! | TTTTCTTGCCAATGTTGTGT+AGG | + | chr3.3:89543777-89543796 | MS.gene75771:intron | 35.0% |
| !! | ATTCTTTTGCCTTGTTCAAG+TGG | - | chr3.3:89545018-89545037 | None:intergenic | 35.0% |
| !! | CACACTGTTGGTAATAATCA+TGG | - | chr3.3:89543992-89544011 | None:intergenic | 35.0% |
| !! | TGATAGCTTGTTGACCATTT+AGG | + | chr3.3:89544778-89544797 | MS.gene75771:intron | 35.0% |
| !! | TTCTTTTGCCTTGTTCAAGT+GGG | - | chr3.3:89545017-89545036 | None:intergenic | 35.0% |
| !!! | CAATTTGTTTGTTTTACCCG+TGG | + | chr3.3:89544752-89544771 | MS.gene75771:intron | 35.0% |
| !!! | GAGTTTTTTCTGCCATTTTC+TGG | + | chr3.3:89546189-89546208 | MS.gene75771:CDS | 35.0% |
| !!! | GTTTTTTTTCTCCTTCATCC+GGG | + | chr3.3:89545383-89545402 | MS.gene75771:intron | 35.0% |
| AAATACAAGAGGATCAGGAG+GGG | - | chr3.3:89545467-89545486 | None:intergenic | 40.0% | |
| AAATCCACCATCTAACCACA+GGG | - | chr3.3:89544722-89544741 | None:intergenic | 40.0% | |
| AAGAAGGTTGTTCTCGCTTA+TGG | + | chr3.3:89545228-89545247 | MS.gene75771:CDS | 40.0% | |
| AATGTTGAAGGCAAAGCTAG+AGG | + | chr3.3:89543858-89543877 | MS.gene75771:CDS | 40.0% | |
| ACAAATACAAGAGGATCAGG+AGG | - | chr3.3:89545469-89545488 | None:intergenic | 40.0% | |
| ACACGCACACAAACAAGAAT+AGG | - | chr3.3:89543103-89543122 | None:intergenic | 40.0% | |
| AGAAAGTGAACTGGGAATCT+CGG | + | chr3.3:89542958-89542977 | MS.gene75771:CDS | 40.0% | |
| AGAAGGTTGTTCTCGCTTAT+GGG | + | chr3.3:89545229-89545248 | MS.gene75771:CDS | 40.0% | |
| AGAGGAATCAGAATCTTCGA+TGG | - | chr3.3:89542131-89542150 | None:intergenic | 40.0% | |
| AGGAAAGTAAAGTCTGAACC+TGG | - | chr3.3:89545287-89545306 | None:intergenic | 40.0% | |
| ATAGCGAAGACGAAAAGCTT+CGG | - | chr3.3:89542061-89542080 | None:intergenic | 40.0% | |
| ATATAGTGTACAGCAAGCCA+AGG | - | chr3.3:89544271-89544290 | None:intergenic | 40.0% | |
| ATTCTAGGCCCTAGAGAAAA+AGG | + | chr3.3:89544590-89544609 | MS.gene75771:intron | 40.0% | |
| CAAATACAAGAGGATCAGGA+GGG | - | chr3.3:89545468-89545487 | None:intergenic | 40.0% | |
| CATTCAATCCTTGCAGAATG+AGG | + | chr3.3:89542566-89542585 | MS.gene75771:CDS | 40.0% | |
| CTATCAGACAAGGTGTATTG+TGG | + | chr3.3:89544180-89544199 | MS.gene75771:intron | 40.0% | |
| GAAGGAGAAAATTAGGGCAA+CGG | - | chr3.3:89542086-89542105 | None:intergenic | 40.0% | |
| GAGAACAACCTTCTTTGTGT+AGG | - | chr3.3:89545223-89545242 | None:intergenic | 40.0% | |
| GAGAGTCATTGGAATGAACA+TGG | + | chr3.3:89544394-89544413 | MS.gene75771:CDS | 40.0% | |
| GAGGATGTAAGTTGTACACT+TGG | + | chr3.3:89543026-89543045 | MS.gene75771:intron | 40.0% | |
| GGTGTAGATATACAGTATGG+AGG | - | chr3.3:89545563-89545582 | None:intergenic | 40.0% | |
| GGTGTTAATGATCAGACTCA+TGG | + | chr3.3:89544232-89544251 | MS.gene75771:intron | 40.0% | |
| TAGCAAGCCATACATTGATC+AGG | + | chr3.3:89545146-89545165 | MS.gene75771:CDS | 40.0% | |
| TATCATCTGCAGCAGCAAAA+AGG | + | chr3.3:89546346-89546365 | MS.gene75771:intron | 40.0% | |
| TCCTCAGAAAAAAGGGTCAT+TGG | + | chr3.3:89542761-89542780 | MS.gene75771:intron | 40.0% | |
| TCTCGCTTATGGGAATTTCT+TGG | + | chr3.3:89545239-89545258 | MS.gene75771:CDS | 40.0% | |
| TGAGATATCACTTCCAACAG+AGG | - | chr3.3:89544424-89544443 | None:intergenic | 40.0% | |
| TTAGATTGAAGCCACACTGT+TGG | - | chr3.3:89544004-89544023 | None:intergenic | 40.0% | |
| TTGAGTAGTGTATTCTCCAC+AGG | + | chr3.3:89543661-89543680 | MS.gene75771:intron | 40.0% | |
| TTGGATTGATACCGAGGAAT+TGG | - | chr3.3:89542192-89542211 | None:intergenic | 40.0% | |
| ! | AAAAGGCACAAGCTGGAAAA+TGG | + | chr3.3:89544607-89544626 | MS.gene75771:CDS | 40.0% |
| ! | AAAGGCACAAGCTGGAAAAT+GGG | + | chr3.3:89544608-89544627 | MS.gene75771:CDS | 40.0% |
| ! | AAGTTGTGGGAGTGTAGTAA+AGG | - | chr3.3:89543426-89543445 | None:intergenic | 40.0% |
| ! | ACGCTTTTCCTATGCATTCT+AGG | + | chr3.3:89544575-89544594 | MS.gene75771:intron | 40.0% |
| ! | AGCTTGTGCCTTTTTCTCTA+GGG | - | chr3.3:89544601-89544620 | None:intergenic | 40.0% |
| ! | CTTTTCACTAGACCCTCTTT+AGG | + | chr3.3:89542612-89542631 | MS.gene75771:intron | 40.0% |
| ! | GAGATTTTGGATTGATACCG+AGG | - | chr3.3:89542198-89542217 | None:intergenic | 40.0% |
| ! | TTTCTTTTCCCCTCTTGTCT+TGG | + | chr3.3:89543297-89543316 | MS.gene75771:intron | 40.0% |
| !! | CACCACAGTAACATCGATTT+AGG | - | chr3.3:89542334-89542353 | None:intergenic | 40.0% |
| !! | GTTTTAATCGTTTCCACGTG+AGG | - | chr3.3:89544639-89544658 | None:intergenic | 40.0% |
| !! | TAAGAGCACGTTCAGTTTTG+CGG | - | chr3.3:89543721-89543740 | None:intergenic | 40.0% |
| !! | TCTTTTGCCTTGTTCAAGTG+GGG | - | chr3.3:89545016-89545035 | None:intergenic | 40.0% |
| !!! | TCCAATGACCCTTTTTTCTG+AGG | - | chr3.3:89542765-89542784 | None:intergenic | 40.0% |
| ACCACCATCCTACACAACAT+TGG | - | chr3.3:89543788-89543807 | None:intergenic | 45.0% | |
| ACTCACAGTCTCACATACCT+CGG | - | chr3.3:89543750-89543769 | None:intergenic | 45.0% | |
| AGAAACCACCAAGACAAGAG+GGG | - | chr3.3:89543308-89543327 | None:intergenic | 45.0% | |
| AGAAGCAACCTCATTCTGCA+AGG | - | chr3.3:89542577-89542596 | None:intergenic | 45.0% | |
| AGATAATAGGCAAGGCCAGA+AGG | - | chr3.3:89546160-89546179 | None:intergenic | 45.0% | |
| ATGATCAGACTCATGGTGCT+TGG | + | chr3.3:89544239-89544258 | MS.gene75771:intron | 45.0% | |
| ATTCCAATGACTCTCAGCCA+CGG | - | chr3.3:89544389-89544408 | None:intergenic | 45.0% | |
| CAAATCCACCATCTAACCAC+AGG | - | chr3.3:89544723-89544742 | None:intergenic | 45.0% | |
| CAGAAACCACCAAGACAAGA+GGG | - | chr3.3:89543309-89543328 | None:intergenic | 45.0% | |
| CCACAGCAATGACCCAAAAT+AGG | - | chr3.3:89543457-89543476 | None:intergenic | 45.0% | |
| CTTGCCAATGTTGTGTAGGA+TGG | + | chr3.3:89543781-89543800 | MS.gene75771:intron | 45.0% | |
| GAAAGTGAACTGGGAATCTC+GGG | + | chr3.3:89542959-89542978 | MS.gene75771:CDS | 45.0% | |
| GAATGAGGTTGCTTCTCTTC+AGG | + | chr3.3:89542581-89542600 | MS.gene75771:CDS | 45.0% | |
| GATAATAGGCAAGGCCAGAA+GGG | - | chr3.3:89546159-89546178 | None:intergenic | 45.0% | |
| GATACCGAGGAATTGGATCT+TGG | - | chr3.3:89542185-89542204 | None:intergenic | 45.0% | |
| GTAGCGACCTGATCAATGTA+TGG | - | chr3.3:89545156-89545175 | None:intergenic | 45.0% | |
| GTGGTCTGTGGTGAAAACAA+AGG | + | chr3.3:89544919-89544938 | MS.gene75771:CDS | 45.0% | |
| TAATGATTCGTGGCCGCTAT+GGG | + | chr3.3:89543514-89543533 | MS.gene75771:intron | 45.0% | |
| TCAACAAGCTATCAGGACCA+CGG | - | chr3.3:89544772-89544791 | None:intergenic | 45.0% | |
| TCATCACTAGCCAAATGTGC+AGG | + | chr3.3:89543489-89543508 | MS.gene75771:intron | 45.0% | |
| TGGTTTCTGCTGAAAGTTGC+TGG | + | chr3.3:89543320-89543339 | MS.gene75771:intron | 45.0% | |
| TGTGAAAGAACAGTGGTCTG+TGG | + | chr3.3:89544907-89544926 | MS.gene75771:CDS | 45.0% | |
| TGTGCAGGTGTAATGATTCG+TGG | + | chr3.3:89543504-89543523 | MS.gene75771:intron | 45.0% | |
| TTAAGTGGTTAGGCCCATAG+CGG | - | chr3.3:89543530-89543549 | None:intergenic | 45.0% | |
| TTCCAGCTGTGAAAGAACAG+TGG | + | chr3.3:89544900-89544919 | MS.gene75771:CDS | 45.0% | |
| TTTCTCCTTCGTTACTTCCG+AGG | + | chr3.3:89542096-89542115 | MS.gene75771:CDS | 45.0% | |
| ! | CAGCTTGTGCCTTTTTCTCT+AGG | - | chr3.3:89544602-89544621 | None:intergenic | 45.0% |
| ! | CTAGAGAAAAAGGCACAAGC+TGG | + | chr3.3:89544600-89544619 | MS.gene75771:CDS | 45.0% |
| ! | TCTGAAGCCCTACACAAAGA+AGG | + | chr3.3:89545212-89545231 | MS.gene75771:CDS | 45.0% |
| ! | TGTGGGAGTGTAGTAAAGGT+GGG | - | chr3.3:89543422-89543441 | None:intergenic | 45.0% |
| ! | TTGTGGGAGTGTAGTAAAGG+TGG | - | chr3.3:89543423-89543442 | None:intergenic | 45.0% |
| !! | AGCTCAACTGGTTTGAGCTA+AGG | - | chr3.3:89545438-89545457 | None:intergenic | 45.0% |
| !! | CCTATTTTGGGTCATTGCTG+TGG | + | chr3.3:89543454-89543473 | MS.gene75771:intron | 45.0% |
| !! | GCTCAACTGGTTTGAGCTAA+GGG | - | chr3.3:89545437-89545456 | None:intergenic | 45.0% |
| !!! | CGTGCTTTTTCAACGTCTCT+TGG | - | chr3.3:89545989-89546008 | None:intergenic | 45.0% |
| !! | ATAAAAAAAAAAAAAAAACT+TGG | - | chr3.3:89542299-89542318 | None:intergenic | 5.0% |
| !! | TTATTACTAAAATATAAATA+TGG | + | chr3.3:89546086-89546105 | MS.gene75771:intron | 5.0% |
| !!! | ATATTTTAGTAATAATATTT+AGG | - | chr3.3:89546081-89546100 | None:intergenic | 5.0% |
| AAAAGGGTCATTGGATGCCG+AGG | + | chr3.3:89542770-89542789 | MS.gene75771:CDS | 50.0% | |
| AAATGAGGACGATGCCTGGA+AGG | + | chr3.3:89543240-89543259 | MS.gene75771:intron | 50.0% | |
| AACCTGGCGATGATATGCAG+TGG | - | chr3.3:89545271-89545290 | None:intergenic | 50.0% | |
| AATGAGGACGATGCCTGGAA+GGG | + | chr3.3:89543241-89543260 | MS.gene75771:intron | 50.0% | |
| ACGTCTCTTGGACAGTAGCT+TGG | - | chr3.3:89545977-89545996 | None:intergenic | 50.0% | |
| ACTCGTCGTAAAGCTAAGCG+AGG | + | chr3.3:89546404-89546423 | MS.gene75771:CDS | 50.0% | |
| ACTGCAATTACTGTGCCCTG+TGG | + | chr3.3:89544704-89544723 | MS.gene75771:intron | 50.0% | |
| ACTTGCTCCCCACTTGAACA+AGG | + | chr3.3:89545006-89545025 | MS.gene75771:CDS | 50.0% | |
| AGCTTTACGACGAGTGTGGT+GGG | - | chr3.3:89546399-89546418 | None:intergenic | 50.0% | |
| CAAAGCAAAAGAGCTGAGCG+AGG | + | chr3.3:89543888-89543907 | MS.gene75771:CDS | 50.0% | |
| CAACAAGCTATCAGGACCAC+GGG | - | chr3.3:89544771-89544790 | None:intergenic | 50.0% | |
| CAGTGCTTGCACATGAGGTT+CGG | - | chr3.3:89544945-89544964 | None:intergenic | 50.0% | |
| CATTGATCAGGTCGCTACTG+CGG | + | chr3.3:89545158-89545177 | MS.gene75771:CDS | 50.0% | |
| CTTTCGAGCTTCCTGTCAAC+CGG | - | chr3.3:89545124-89545143 | None:intergenic | 50.0% | |
| GAAGTCAGTGCTTGCACATG+AGG | - | chr3.3:89544950-89544969 | None:intergenic | 50.0% | |
| GACCACTGTTCTTTCACAGC+TGG | - | chr3.3:89544905-89544924 | None:intergenic | 50.0% | |
| GACCTGCTTCTGTAGTTCAC+CGG | - | chr3.3:89542823-89542842 | None:intergenic | 50.0% | |
| GCAGAAACCACCAAGACAAG+AGG | - | chr3.3:89543310-89543329 | None:intergenic | 50.0% | |
| GCCAATGTTGTGTAGGATGG+TGG | + | chr3.3:89543784-89543803 | MS.gene75771:intron | 50.0% | |
| GGTATTCTCAACCGGTTGAC+AGG | + | chr3.3:89545110-89545129 | MS.gene75771:intron | 50.0% | |
| GTAATGATTCGTGGCCGCTA+TGG | + | chr3.3:89543513-89543532 | MS.gene75771:intron | 50.0% | |
| TACTGTGCCCTGTGGTTAGA+TGG | + | chr3.3:89544712-89544731 | MS.gene75771:intron | 50.0% | |
| TAGTGTACAGCAAGCCAAGG+AGG | - | chr3.3:89544268-89544287 | None:intergenic | 50.0% | |
| TGAACATGGGAAGCCTCTGT+TGG | + | chr3.3:89544408-89544427 | MS.gene75771:CDS | 50.0% | |
| TGAGCTAAGGGATGAGGAGT+TGG | - | chr3.3:89545425-89545444 | None:intergenic | 50.0% | |
| TGCAAAATGAGGACGATGCC+TGG | + | chr3.3:89543236-89543255 | MS.gene75771:intron | 50.0% | |
| TGCTGCTGCTGTTGTTAGCA+AGG | + | chr3.3:89545501-89545520 | MS.gene75771:intron | 50.0% | |
| TTCGATGGAAACATCGGCCT+CGG | - | chr3.3:89542116-89542135 | None:intergenic | 50.0% | |
| ! | CTCGCTCAGCTCTTTTGCTT+TGG | - | chr3.3:89543890-89543909 | None:intergenic | 50.0% |
| ! | CTGGTTTGAGCTAAGGGATG+AGG | - | chr3.3:89545431-89545450 | None:intergenic | 50.0% |
| ! | CTTTTCCCCTCTTGTCTTGG+TGG | + | chr3.3:89543300-89543319 | MS.gene75771:intron | 50.0% |
| ! | TAGCTTTACGACGAGTGTGG+TGG | - | chr3.3:89546400-89546419 | None:intergenic | 50.0% |
| !! | AAAATGGGCTGAACCTCACG+TGG | + | chr3.3:89544623-89544642 | MS.gene75771:CDS | 50.0% |
| !! | CTCTAGGGCCTAGAATGCAT+AGG | - | chr3.3:89544586-89544605 | None:intergenic | 50.0% |
| !! | GCTTAGCTTTACGACGAGTG+TGG | - | chr3.3:89546403-89546422 | None:intergenic | 50.0% |
| AATGAGGACGATGCCCTTCC+AGG | - | chr3.3:89543257-89543276 | None:intergenic | 55.0% | |
| ACAAGAGGATCAGGAGGGGT+TGG | - | chr3.3:89545463-89545482 | None:intergenic | 55.0% | |
| ACACACAGCTCCCTACGATG+AGG | - | chr3.3:89545712-89545731 | None:intergenic | 55.0% | |
| ACGTGCTCTTAAAGTCGCCG+AGG | + | chr3.3:89543730-89543749 | MS.gene75771:CDS | 55.0% | |
| AGCCACTGCATATCATCGCC+AGG | + | chr3.3:89545266-89545285 | MS.gene75771:CDS | 55.0% | |
| AGCCTTTCCAACCTGCTCCT+CGG | - | chr3.3:89542790-89542809 | None:intergenic | 55.0% | |
| AGTCCGTGGCTGAGAGTCAT+TGG | + | chr3.3:89544383-89544402 | MS.gene75771:intron | 55.0% | |
| ATCGGCCTCGGAAGTAACGA+AGG | - | chr3.3:89542104-89542123 | None:intergenic | 55.0% | |
| ATGGTGCTTGGCTTCCTCCT+TGG | + | chr3.3:89544251-89544270 | MS.gene75771:CDS | 55.0% | |
| CAAGAGGATCAGGAGGGGTT+GGG | - | chr3.3:89545462-89545481 | None:intergenic | 55.0% | |
| CTTCATCCGGGTTTCAACCC+AGG | + | chr3.3:89545395-89545414 | MS.gene75771:intron | 55.0% | |
| GATGAGGAGTTGGAGGTCCT+GGG | - | chr3.3:89545415-89545434 | None:intergenic | 55.0% | |
| GCAAGTAAACCCGCTCGAAG+TGG | + | chr3.3:89546368-89546387 | MS.gene75771:CDS | 55.0% | |
| GCGAAGACGAAAAGCTTCGG+AGG | - | chr3.3:89542058-89542077 | None:intergenic | 55.0% | |
| GCTAAGGGATGAGGAGTTGG+AGG | - | chr3.3:89545422-89545441 | None:intergenic | 55.0% | |
| GTGGGTGTTTCCACTTCGAG+CGG | - | chr3.3:89546381-89546400 | None:intergenic | 55.0% | |
| TGCCGGTGAACTACAGAAGC+AGG | + | chr3.3:89542818-89542837 | MS.gene75771:CDS | 55.0% | |
| TGGGTGTTTCCACTTCGAGC+GGG | - | chr3.3:89546380-89546399 | None:intergenic | 55.0% | |
| TGTGCCCTGTGGTTAGATGG+TGG | + | chr3.3:89544715-89544734 | MS.gene75771:intron | 55.0% | |
| ! | CTGGGTTGAAACCCGGATGA+AGG | - | chr3.3:89545397-89545416 | None:intergenic | 55.0% |
| GAGGGGTTGGGTAGCTCAAC+TGG | - | chr3.3:89545450-89545469 | None:intergenic | 60.0% | |
| GGAAAGGCTCATGCACGTGC+CGG | + | chr3.3:89542801-89542820 | MS.gene75771:CDS | 60.0% | |
| GGATGAGGAGTTGGAGGTCC+TGG | - | chr3.3:89545416-89545435 | None:intergenic | 60.0% | |
| GGGAGCAAGTGCGTCCTTTG+AGG | - | chr3.3:89544996-89545015 | None:intergenic | 60.0% | |
| GTCATTGGATGCCGAGGAGC+AGG | + | chr3.3:89542776-89542795 | MS.gene75771:CDS | 60.0% | |
| TATGCAGGCCTCTGCCCTTC+TGG | + | chr3.3:89546142-89546161 | MS.gene75771:intron | 60.0% | |
| TTGGATGCCGAGGAGCAGGT+TGG | + | chr3.3:89542780-89542799 | MS.gene75771:CDS | 60.0% | |
| ! | GGAGGTCCTGGGTTGAAACC+CGG | - | chr3.3:89545404-89545423 | None:intergenic | 60.0% |
| ! | TGCCGAGGAGCAGGTTGGAA+AGG | + | chr3.3:89542785-89542804 | MS.gene75771:CDS | 60.0% |
| AGGCAAGGCCAGAAGGGCAG+AGG | - | chr3.3:89546153-89546172 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 89542049 | 89546442 | 89542049 | ID=MS.gene75771 |
| chr3.3 | mRNA | 89542049 | 89546442 | 89542049 | ID=MS.gene75771.t1;Parent=MS.gene75771 |
| chr3.3 | exon | 89542049 | 89542199 | 89542049 | ID=MS.gene75771.t1.exon1;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89542049 | 89542199 | 89542049 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89542475 | 89542602 | 89542475 | ID=MS.gene75771.t1.exon2;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89542475 | 89542602 | 89542475 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89542768 | 89542839 | 89542768 | ID=MS.gene75771.t1.exon3;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89542768 | 89542839 | 89542768 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89542918 | 89543031 | 89542918 | ID=MS.gene75771.t1.exon4;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89542918 | 89543031 | 89542918 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89543683 | 89543751 | 89543683 | ID=MS.gene75771.t1.exon5;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89543683 | 89543751 | 89543683 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89543853 | 89543909 | 89543853 | ID=MS.gene75771.t1.exon6;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89543853 | 89543909 | 89543853 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89544247 | 89544300 | 89544247 | ID=MS.gene75771.t1.exon7;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89544247 | 89544300 | 89544247 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89544385 | 89544447 | 89544385 | ID=MS.gene75771.t1.exon8;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89544385 | 89544447 | 89544385 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89544597 | 89544659 | 89544597 | ID=MS.gene75771.t1.exon9;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89544597 | 89544659 | 89544597 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89544893 | 89545057 | 89544893 | ID=MS.gene75771.t1.exon10;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89544893 | 89545057 | 89544893 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89545132 | 89545287 | 89545132 | ID=MS.gene75771.t1.exon11;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89545132 | 89545287 | 89545132 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89545972 | 89546052 | 89545972 | ID=MS.gene75771.t1.exon12;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89545972 | 89546052 | 89545972 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89546149 | 89546210 | 89546149 | ID=MS.gene75771.t1.exon13;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89546149 | 89546210 | 89546149 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| chr3.3 | exon | 89546358 | 89546442 | 89546358 | ID=MS.gene75771.t1.exon14;Parent=MS.gene75771.t1 |
| chr3.3 | CDS | 89546358 | 89546442 | 89546358 | ID=cds.MS.gene75771.t1;Parent=MS.gene75771.t1 |
| Gene Sequence |
| Protein sequence |
