AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81663


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81663.t1 MTR_5g084930 98.621 435 6 0 1 435 1 435 0.0 881
MS.gene81663.t1 MTR_2g021750 84.211 133 21 0 1 133 1 133 1.87e-72 232
MS.gene81663.t1 MTR_2g021750 44.037 109 60 1 156 264 26 133 2.06e-23 100
MS.gene81663.t1 MTR_7g112040 33.456 272 155 8 1 267 3 253 9.40e-40 146
MS.gene81663.t1 MTR_7g112040 42.308 130 67 4 157 280 23 150 2.67e-21 95.1
MS.gene81663.t1 MTR_1g087520 34.583 240 137 5 33 267 34 258 3.81e-39 144
MS.gene81663.t1 MTR_1g087520 52.041 98 44 2 28 122 147 244 5.79e-24 102
MS.gene81663.t1 MTR_1g087520 40.625 128 68 4 163 284 34 159 2.76e-19 89.4
MS.gene81663.t1 MTR_3g088220 42.202 109 56 4 30 132 35 142 4.87e-17 83.6
MS.gene81663.t1 MTR_3g088220 34.884 172 93 7 163 329 38 195 1.61e-16 82.0
MS.gene81663.t1 MTR_3g088220 32.381 105 69 1 26 128 375 479 2.44e-11 65.9
MS.gene81663.t1 MTR_1g096790 41.176 102 55 3 30 128 28 127 9.04e-17 82.4
MS.gene81663.t1 MTR_1g096790 29.075 227 129 7 163 382 31 232 3.80e-15 77.4
MS.gene81663.t1 MTR_2g094180 41.600 125 65 4 135 256 55 174 1.73e-14 75.9
MS.gene81663.t1 MTR_2g094180 51.220 82 38 2 30 110 80 160 3.93e-13 71.6
MS.gene81663.t1 MTR_2g094180 32.609 138 87 3 36 169 424 559 7.57e-12 67.8
MS.gene81663.t1 MTR_2g094180 27.184 206 132 6 64 259 322 519 1.47e-11 66.6
MS.gene81663.t1 MTR_2g079420 27.517 149 98 2 107 245 9 157 2.39e-14 71.2
MS.gene81663.t1 MTR_2g079420 34.653 101 66 0 11 111 51 151 3.32e-13 68.2
MS.gene81663.t1 MTR_8g059015 41.463 82 48 0 30 111 73 154 2.95e-14 71.2
MS.gene81663.t1 MTR_8g059015 25.131 191 123 6 72 259 2 175 2.39e-12 65.5
MS.gene81663.t1 MTR_1g114290 34.483 116 72 2 24 138 64 176 1.66e-13 68.9
MS.gene81663.t1 MTR_1g114290 30.631 111 73 1 153 263 63 169 7.15e-13 67.4
MS.gene81663.t1 MTR_2g093680 27.966 118 82 2 17 132 29 145 3.45e-13 67.8
MS.gene81663.t1 MTR_2g093680 28.333 120 83 2 156 273 37 155 5.03e-12 64.3
MS.gene81663.t1 MTR_1g098660 32.558 86 58 0 34 119 66 151 6.68e-13 67.0
MS.gene81663.t1 MTR_1g098660 29.808 104 66 3 166 268 68 165 2.72e-11 62.4
MS.gene81663.t1 MTR_2g079340 41.975 81 47 0 31 111 37 117 9.41e-13 66.2
MS.gene81663.t1 MTR_2g079340 36.620 71 45 0 167 237 43 113 3.41e-11 62.0
MS.gene81663.t1 MTR_4g059450 48.421 95 40 5 30 120 102 191 1.51e-12 69.7
MS.gene81663.t1 MTR_2g079400 34.513 113 68 1 5 111 3 115 5.31e-12 63.5
MS.gene81663.t1 MTR_3g089065 35.632 87 56 0 33 119 73 159 9.78e-12 63.9
MS.gene81663.t1 MTR_4g080800 32.967 91 52 2 160 242 143 232 2.24e-11 65.9
MS.gene81663.t1 MTR_4g085880 36.905 84 50 1 31 111 63 146 6.09e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81663.t1 AT1G04980 72.523 444 112 4 1 435 5 447 0.0 679
MS.gene81663.t1 AT2G32920 73.944 426 106 4 14 435 16 440 0.0 655
MS.gene81663.t1 AT2G47470 36.667 240 132 5 33 267 28 252 1.52e-44 156
MS.gene81663.t1 AT2G47470 53.398 103 43 3 30 128 143 244 4.78e-27 109
MS.gene81663.t1 AT2G47470 39.370 127 71 3 163 284 28 153 1.23e-19 88.6
MS.gene81663.t1 AT2G47470 36.667 240 132 5 33 267 28 252 3.53e-44 157
MS.gene81663.t1 AT2G47470 53.398 103 43 3 30 128 143 244 4.82e-27 110
MS.gene81663.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.89e-19 88.6
MS.gene81663.t1 AT2G47470 36.667 240 132 5 33 267 28 252 3.64e-44 157
MS.gene81663.t1 AT2G47470 53.398 103 43 3 30 128 143 244 5.37e-27 110
MS.gene81663.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.79e-19 89.0
MS.gene81663.t1 AT2G47470 36.667 240 132 5 33 267 28 252 4.68e-44 157
MS.gene81663.t1 AT2G47470 53.398 103 43 3 30 128 143 244 5.65e-27 111
MS.gene81663.t1 AT2G47470 39.370 127 71 3 163 284 28 153 3.14e-19 89.0
MS.gene81663.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.06e-18 89.0
MS.gene81663.t1 AT3G54960 28.182 220 136 6 163 380 104 303 2.53e-15 78.6
MS.gene81663.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.36e-18 88.6
MS.gene81663.t1 AT3G54960 28.182 220 136 6 163 380 104 303 3.15e-15 78.2
MS.gene81663.t1 AT3G54960 37.363 91 49 2 36 126 445 527 3.41e-11 65.5
MS.gene81663.t1 AT1G21750 41.284 109 57 4 30 132 32 139 1.18e-17 85.5
MS.gene81663.t1 AT1G21750 35.849 106 62 3 163 263 35 139 1.01e-14 76.3
MS.gene81663.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.22e-12 70.1
MS.gene81663.t1 AT1G21750 41.284 109 57 4 30 132 32 139 1.19e-17 85.5
MS.gene81663.t1 AT1G21750 29.518 166 99 5 163 323 35 187 1.05e-14 76.3
MS.gene81663.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.04e-12 70.1
MS.gene81663.t1 AT1G21750 35.577 104 64 2 165 266 381 483 3.23e-11 65.5
MS.gene81663.t1 AT5G60640 36.493 211 111 10 30 226 105 306 1.59e-17 85.5
MS.gene81663.t1 AT5G60640 42.424 99 49 4 161 256 106 199 4.50e-15 77.8
MS.gene81663.t1 AT5G60640 26.733 202 130 5 68 259 351 544 7.63e-12 67.8
MS.gene81663.t1 AT5G60640 36.493 211 111 10 30 226 105 306 1.85e-17 85.1
MS.gene81663.t1 AT5G60640 42.424 99 49 4 161 256 106 199 5.92e-15 77.4
MS.gene81663.t1 AT5G60640 26.633 199 129 5 62 252 346 535 3.61e-11 65.5
MS.gene81663.t1 AT5G60640 36.493 211 111 10 30 226 105 306 2.06e-17 84.7
MS.gene81663.t1 AT5G60640 42.424 99 49 4 161 256 106 199 3.57e-15 77.8
MS.gene81663.t1 AT5G60640 34.737 95 60 1 167 259 386 480 3.86e-11 65.5
MS.gene81663.t1 AT1G77510 40.367 109 58 4 30 132 31 138 8.87e-17 82.8
MS.gene81663.t1 AT1G77510 28.421 190 117 6 152 336 23 198 1.46e-16 82.0
MS.gene81663.t1 AT1G77510 26.820 261 163 11 14 259 227 474 5.23e-11 65.1
MS.gene81663.t1 AT1G35620 38.235 102 58 3 30 128 34 133 8.62e-15 76.6
MS.gene81663.t1 AT1G35620 27.966 236 138 10 155 383 29 239 8.78e-14 73.2
MS.gene81663.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81663.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81663.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81663.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81663.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81663.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81663.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81663.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81663.t1 AT1G43560 37.209 86 54 0 34 119 64 149 1.54e-13 68.9
MS.gene81663.t1 AT1G76760 31.429 105 68 1 34 138 69 169 2.03e-13 68.6
MS.gene81663.t1 AT4G03520 36.082 97 59 2 151 245 74 169 3.70e-12 65.5
MS.gene81663.t1 AT1G50320 30.000 150 89 4 121 263 30 170 4.41e-12 65.1
MS.gene81663.t1 AT3G15360 36.667 90 57 0 30 119 88 177 4.76e-12 65.1
MS.gene81663.t1 AT4G27080 33.663 101 58 2 150 242 133 232 3.16e-11 65.5
MS.gene81663.t1 AT4G27080 33.663 101 58 2 150 242 185 284 3.68e-11 65.5
MS.gene81663.t1 AT1G03680 26.282 156 95 4 110 245 8 163 7.48e-11 61.2
MS.gene81663.t1 AT3G20560 34.000 100 57 2 151 242 134 232 9.45e-11 63.9

Find 108 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTCCCTTTCAAATTAT+TGG 0.104762 5.1:+66802348 None:intergenic
TTCCCAACAATCTTGGTATT+TGG 0.173156 5.1:-66801934 MS.gene81663:CDS
TTCCTTCCTTCCCGACATTT+TGG 0.184244 5.1:-66801654 MS.gene81663:CDS
CTTAATTCCCTTCAGGAATA+TGG 0.210374 5.1:-66803136 MS.gene81663:intron
GAAGGCAGCTACTGTATTAA+AGG 0.276220 5.1:-66804053 MS.gene81663:CDS
CTCTAGTAACTTCGATGAAT+TGG 0.285509 5.1:-66802576 MS.gene81663:CDS
CTTCAGGAATATGGTATTAG+AGG 0.289766 5.1:-66803127 MS.gene81663:intron
CTATATAGCTCTGTCACTTC+TGG 0.297987 5.1:+66801814 None:intergenic
GTTTCCTTATAGTTCATCTT+TGG 0.305542 5.1:+66800769 None:intergenic
TTTGAAAGGGAAGGTTAAAC+TGG 0.309941 5.1:-66802341 MS.gene81663:CDS
GTAAGGCTCTGACTCCTATA+TGG 0.316417 5.1:-66804078 MS.gene81663:CDS
TGCGATTGGTTTAACATCTC+TGG 0.351595 5.1:+66803048 None:intergenic
CTCAAGGTCTGGCTGCTTAC+CGG 0.356762 5.1:+66801149 None:intergenic
TAGAGGATTTCCAACTATAA+AGG 0.370686 5.1:-66803110 MS.gene81663:CDS
AACACCTTTCTTAACGTTCA+AGG 0.373568 5.1:+66801083 None:intergenic
CGCAGAATATGCACTTCAAC+AGG 0.373604 5.1:-66803029 MS.gene81663:intron
TCAACCAAAGATGAACTATA+AGG 0.387123 5.1:-66800773 None:intergenic
AAAGTTGGTGTTGGTGGGTA+TGG 0.390826 5.1:-66801123 MS.gene81663:CDS
GGGTCTTGAACAGCTATGTA+TGG 0.397598 5.1:-66801179 MS.gene81663:intron
CTAGCACCCTCGTAAGGAAT+TGG 0.409040 5.1:+66801895 None:intergenic
TCAAGGATTCCCAACAATCT+TGG 0.416145 5.1:-66801941 MS.gene81663:CDS
TCCATGGTGCGGGCACTGTA+AGG 0.416505 5.1:-66804095 MS.gene81663:CDS
ACCTTGGACTTGAAGTTGTT+AGG 0.419712 5.1:+66805410 None:intergenic
TTGTTGAATTCTTTGCTCCA+TGG 0.424265 5.1:-66804111 MS.gene81663:CDS
TGCTGATGCTCACCAATCTC+TGG 0.427343 5.1:-66804005 MS.gene81663:CDS
AGTTCAAAAGGAGTCCTTAC+AGG 0.430959 5.1:-66801574 MS.gene81663:intron
TTAGGAGTGAGTTGAAGAAC+AGG 0.432451 5.1:+66805428 None:intergenic
CTGGCTCCTTGGTAATCAAC+TGG 0.433932 5.1:+66803067 None:intergenic
AGGAATTGGAGTATCTTTAT+CGG 0.435399 5.1:+66801909 None:intergenic
AGAAACCACCGCTTCTTCTT+CGG 0.438238 5.1:-66802609 MS.gene81663:CDS
TCTGTTTCTCCCCTCCGCCT+TGG 0.439079 5.1:+66801628 None:intergenic
AGAGAATTTGTGAAAGAAGC+TGG 0.439854 5.1:-66800932 MS.gene81663:CDS
GTGTTGTCTATAGGATGTTT+TGG 0.440808 5.1:-66801711 MS.gene81663:intron
TTATCAAAAGCAAAGAACTT+TGG 0.443575 5.1:-66802553 MS.gene81663:CDS
TTTGTCAGTCTCTAATGAGC+AGG 0.447245 5.1:-66801972 MS.gene81663:intron
GGTGCAAACACCTTTATAGT+TGG 0.448420 5.1:+66803100 None:intergenic
CCAACTTTCTGCTCAAGGTC+TGG 0.450805 5.1:+66801138 None:intergenic
AACCGTAGAGAGCGTGAGAA+AGG 0.451953 5.1:+66805459 None:intergenic
TGCTCACCAATCTCTGGCTC+AGG 0.454025 5.1:-66803999 MS.gene81663:intron
GTTTAACATCTCTGGCTCCT+TGG 0.454708 5.1:+66803056 None:intergenic
ATGAGCAGGTTCAATGTTCA+AGG 0.456443 5.1:-66801958 MS.gene81663:CDS
AATTCTTTGCTCCATGGTGC+GGG 0.458259 5.1:-66804105 MS.gene81663:CDS
ATCATTCGCACTAGAGCAGC+TGG 0.462465 5.1:-66801854 MS.gene81663:CDS
TTATAGTTCATCTTTGGTTG+AGG 0.465932 5.1:+66800775 None:intergenic
TGTCAGGTTCTGAATTCAAA+TGG 0.470995 5.1:-66804142 MS.gene81663:intron
CTCCAAATACCAAGATTGTT+GGG 0.472339 5.1:+66801932 None:intergenic
GGAAAACCTGAGCCAGAGAT+TGG 0.473756 5.1:+66803993 None:intergenic
CGGTTAAATGGAAAAGCAAC+AGG 0.474554 5.1:-66802650 MS.gene81663:CDS
GCTCCAAATACCAAGATTGT+TGG 0.479181 5.1:+66801931 None:intergenic
ACGTTCAAGGCTACTAATGC+TGG 0.481617 5.1:+66801096 None:intergenic
ATCCTTTCTCACGCTCTCTA+CGG 0.482498 5.1:-66805461 MS.gene81663:CDS
CAGTTGCAGAGAAGTTCAAA+AGG 0.484219 5.1:-66801586 MS.gene81663:CDS
GGTTCTGTCTTTACAATGGT+GGG 0.490337 5.1:+66800869 None:intergenic
ACTATAAAGGTGTTTGCACC+TGG 0.493971 5.1:-66803097 MS.gene81663:CDS
GCCTTGGAATCCAAAATGTC+GGG 0.495320 5.1:+66801644 None:intergenic
GAACCATGGGATGGAAAAGA+TGG 0.495841 5.1:-66800851 MS.gene81663:CDS
TGGTTCTGTCTTTACAATGG+TGG 0.496152 5.1:+66800868 None:intergenic
AGAGCATCCAATAATTTGAA+AGG 0.498898 5.1:-66802355 MS.gene81663:CDS
CGCCTTGGAATCCAAAATGT+CGG 0.513014 5.1:+66801643 None:intergenic
GAAGCTGGACGTGGAGGCAA+AGG 0.515570 5.1:-66800917 MS.gene81663:CDS
AAGGCAGCTACTGTATTAAA+GGG 0.517489 5.1:-66804052 MS.gene81663:CDS
GAGCATCCAATAATTTGAAA+GGG 0.518744 5.1:-66802354 MS.gene81663:CDS
GTAGCTGCCTTCTCCCATAT+AGG 0.519121 5.1:+66804064 None:intergenic
TGGTGGGAGGAGTGTCACCT+AGG 0.522614 5.1:+66800885 None:intergenic
ATCCAATAATTTGAAAGGGA+AGG 0.529134 5.1:-66802350 MS.gene81663:CDS
TAAGGCTCTGACTCCTATAT+GGG 0.533987 5.1:-66804077 MS.gene81663:CDS
CCAGACCTTGAGCAGAAAGT+TGG 0.535182 5.1:-66801138 MS.gene81663:CDS
GGTGGGAGGAGTGTCACCTA+GGG 0.535529 5.1:+66800886 None:intergenic
GAATTCTTTGCTCCATGGTG+CGG 0.548779 5.1:-66804106 MS.gene81663:CDS
GAGCAGAAAGTTGGTGTTGG+TGG 0.549595 5.1:-66801129 MS.gene81663:CDS
TGAAGTGCATATTCTGCGAT+TGG 0.550530 5.1:+66803034 None:intergenic
TCCTAACAACTTCAAGTCCA+AGG 0.552476 5.1:-66805411 MS.gene81663:intron
ATCCAAAATGTCGGGAAGGA+AGG 0.552840 5.1:+66801652 None:intergenic
CCATGGTTCTGTCTTTACAA+TGG 0.553296 5.1:+66800865 None:intergenic
GTAGCCTTGAACGTTAAGAA+AGG 0.556407 5.1:-66801087 MS.gene81663:CDS
CTCTAGTGCGAATGATTCGA+TGG 0.558140 5.1:+66801861 None:intergenic
GGTCTTGAACAGCTATGTAT+GGG 0.559621 5.1:-66801178 MS.gene81663:intron
AAAAGATGGAGAAATAATTG+AGG 0.562273 5.1:-66800837 MS.gene81663:CDS
GCCTTACAGTGCCCGCACCA+TGG 0.567839 5.1:+66804094 None:intergenic
CAACTGTTAATAACTGCTGA+AGG 0.571823 5.1:+66801603 None:intergenic
GCAGTTCTAGCACCCTCGTA+AGG 0.576634 5.1:+66801889 None:intergenic
CAACACCAACTTTCTGCTCA+AGG 0.577087 5.1:+66801133 None:intergenic
GCTCCTTGGTAATCAACTGG+TGG 0.580906 5.1:+66803070 None:intergenic
AGCAGAAAGTTGGTGTTGGT+GGG 0.581032 5.1:-66801128 MS.gene81663:CDS
AAGCTGGACGTGGAGGCAAA+GGG 0.583780 5.1:-66800916 MS.gene81663:CDS
TTTGTGAAAGAAGCTGGACG+TGG 0.587104 5.1:-66800926 MS.gene81663:CDS
AGCTATGTATGGGCAGCTGC+CGG 0.590014 5.1:-66801168 MS.gene81663:CDS
AGTGAGTTGAAGAACAGGTG+AGG 0.594004 5.1:+66805433 None:intergenic
TCTGACTCCTATATGGGAGA+AGG 0.598675 5.1:-66804071 MS.gene81663:CDS
TCTGTCTTTACAATGGTGGG+AGG 0.605063 5.1:+66800872 None:intergenic
TAGTTCTACCGAAGAAGAAG+CGG 0.621191 5.1:+66802601 None:intergenic
AGTTCAAAAGCACTCTTGAG+AGG 0.621890 5.1:+66801054 None:intergenic
CATTGTAAAGACAGAACCAT+GGG 0.623172 5.1:-66800864 MS.gene81663:CDS
TTCTACCGAAGAAGAAGCGG+TGG 0.624355 5.1:+66802604 None:intergenic
GGCAAAGGGAACTTGCCCCT+AGG 0.627464 5.1:-66800902 MS.gene81663:CDS
CTTGAGCAGAAAGTTGGTGT+TGG 0.628583 5.1:-66801132 MS.gene81663:CDS
TTGAAAGGGAAGGTTAAACT+GGG 0.631529 5.1:-66802340 MS.gene81663:CDS
TGGAATCCAAAATGTCGGGA+AGG 0.635224 5.1:+66801648 None:intergenic
GATACTCCAATTCCTTACGA+GGG 0.636183 5.1:-66801901 MS.gene81663:CDS
TGTTGACTGTGATGCTGACA+AGG 0.636371 5.1:-66802314 MS.gene81663:intron
GTAAAGACAGAACCATGGGA+TGG 0.640244 5.1:-66800860 MS.gene81663:CDS
TATAGCTCTGTCACTTCTGG+AGG 0.640322 5.1:+66801817 None:intergenic
GTGAAAGAAGCTGGACGTGG+AGG 0.650513 5.1:-66800923 MS.gene81663:CDS
TTAAATGGAAAAGCAACAGG+TGG 0.661631 5.1:-66802647 MS.gene81663:CDS
AGATACTCCAATTCCTTACG+AGG 0.665654 5.1:-66801902 MS.gene81663:CDS
GTGGGAGGAGTGTCACCTAG+GGG 0.673404 5.1:+66800887 None:intergenic
CCATTGTAAAGACAGAACCA+TGG 0.708421 5.1:-66800865 MS.gene81663:CDS
AAACCACCAGTTGATTACCA+AGG 0.716041 5.1:-66803073 MS.gene81663:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTATCTTTATACATA+AGG + chr5.1:66801939-66801958 None:intergenic 10.0%
!! GTAATAAATAATTGAAATAT+AGG + chr5.1:66803793-66803812 None:intergenic 10.0%
!! TAATTTATCTTTATACATAA+GGG + chr5.1:66801938-66801957 None:intergenic 10.0%
!! TATAAATAAATTGAAAAGTA+AGG + chr5.1:66804227-66804246 None:intergenic 10.0%
!!! TCATTTTCTAAAATTATTAT+CGG - chr5.1:66801330-66801349 MS.gene81663:intron 10.0%
!! AAAAATAGACTTACATAATT+TGG + chr5.1:66805262-66805281 None:intergenic 15.0%
!! AATATTTGATTGAAACTTTA+AGG + chr5.1:66803323-66803342 None:intergenic 15.0%
!! AATTTATCTTTATACATAAG+GGG + chr5.1:66801937-66801956 None:intergenic 15.0%
!! AATTTGATTAATAACTTGAA+AGG - chr5.1:66803457-66803476 MS.gene81663:intron 15.0%
!! ATAACACATAATATTCATAA+AGG + chr5.1:66802419-66802438 None:intergenic 15.0%
!! ATTTGATTAATAACTTGAAA+GGG - chr5.1:66803458-66803477 MS.gene81663:intron 15.0%
!! TGAAAAATTACTACAAATAA+AGG - chr5.1:66803432-66803451 MS.gene81663:intron 15.0%
!! TTATACTATTGTATTATGAT+TGG - chr5.1:66801998-66802017 MS.gene81663:intron 15.0%
!!! AAAAATTATTCGTATTTTCT+TGG + chr5.1:66802054-66802073 None:intergenic 15.0%
!!! AAAATTATTCGTATTTTCTT+GGG + chr5.1:66802053-66802072 None:intergenic 15.0%
!!! ATAAAATTGTTTGATGTTTT+AGG - chr5.1:66802803-66802822 MS.gene81663:intron 15.0%
!!! TAAAATTGTTTGATGTTTTA+GGG - chr5.1:66802804-66802823 MS.gene81663:intron 15.0%
!! AAATTTAAATACTGAATCTG+AGG + chr5.1:66802338-66802357 None:intergenic 20.0%
!! AAGGAAAAACTTTACATATA+AGG + chr5.1:66802868-66802887 None:intergenic 20.0%
!! ATTGAAAAAAGATTAAACCT+TGG + chr5.1:66800896-66800915 None:intergenic 20.0%
!! CACTAATGTAATTTATTCTT+TGG + chr5.1:66802928-66802947 None:intergenic 20.0%
!! CATGTTTAAATCAAGATAAA+AGG - chr5.1:66804862-66804881 MS.gene81663:intron 20.0%
!! TACTAACTAAACTCAAATTA+AGG - chr5.1:66801806-66801825 MS.gene81663:intron 20.0%
!! TACTTACATGGAAATATAAT+GGG - chr5.1:66804977-66804996 MS.gene81663:intron 20.0%
!! TCAGAATAATATAAACTGAA+AGG + chr5.1:66804283-66804302 None:intergenic 20.0%
!! TTATAGCTTATATGAAAAAC+AGG - chr5.1:66802644-66802663 MS.gene81663:CDS 20.0%
!! TTTAACAAACTGTTATTGTT+CGG - chr5.1:66804082-66804101 MS.gene81663:CDS 20.0%
!!! AAATTATTCGTATTTTCTTG+GGG + chr5.1:66802052-66802071 None:intergenic 20.0%
!!! AATGGTTTTTTGTTTGAATT+TGG - chr5.1:66805087-66805106 MS.gene81663:intron 20.0%
!!! ATGGTTTTTTGTTTGAATTT+GGG - chr5.1:66805088-66805107 MS.gene81663:intron 20.0%
!!! CTAATTTTATGCTAAATAGT+TGG - chr5.1:66805282-66805301 MS.gene81663:intron 20.0%
!!! GTCTTTTTTTTATTTCTCAA+AGG - chr5.1:66803873-66803892 MS.gene81663:intron 20.0%
!!! TCTTTCAAATTCAACTTTTT+CGG - chr5.1:66804806-66804825 MS.gene81663:intron 20.0%
!!! TTGCAGTTATTTTTAAATTG+CGG - chr5.1:66804944-66804963 MS.gene81663:intron 20.0%
! AAAAGATGGAGAAATAATTG+AGG - chr5.1:66805450-66805469 MS.gene81663:CDS 25.0%
! AAAATACCAGCTAAAAAAGT+GGG + chr5.1:66800942-66800961 None:intergenic 25.0%
! AATATCAATGTATTGGGATT+AGG - chr5.1:66803531-66803550 MS.gene81663:intron 25.0%
! AGTGAGAATATCAATGTATT+GGG - chr5.1:66803525-66803544 MS.gene81663:intron 25.0%
! ATATCAATGTATTGGGATTA+GGG - chr5.1:66803532-66803551 MS.gene81663:intron 25.0%
! CAATAGTATAAAAGACTGTT+TGG + chr5.1:66801989-66802008 None:intergenic 25.0%
! GTACTTACATGGAAATATAA+TGG - chr5.1:66804976-66804995 MS.gene81663:intron 25.0%
! TAGCACTAAAATTTAGTTGA+AGG - chr5.1:66801470-66801489 MS.gene81663:intron 25.0%
! TATAGTTTATTTGCATGTAC+AGG - chr5.1:66803594-66803613 MS.gene81663:intron 25.0%
! TCAGTTTATATTATTCTGAC+AGG - chr5.1:66804284-66804303 MS.gene81663:intron 25.0%
! TTATCAAAAGCAAAGAACTT+TGG - chr5.1:66803734-66803753 MS.gene81663:intron 25.0%
! TTTATCCTTGAAAACTATCT+GGG - chr5.1:66800999-66801018 MS.gene81663:intron 25.0%
!! AAGTGATTTTATGTTTGGAT+AGG - chr5.1:66801495-66801514 MS.gene81663:intron 25.0%
!! AGGTAAAGTGATTTTATGTT+TGG - chr5.1:66801490-66801509 MS.gene81663:intron 25.0%
!! ATTAAGTTGTTAATCCCAAT+AGG - chr5.1:66802732-66802751 MS.gene81663:intron 25.0%
!! ATTTGATTGAAACTTTAAGG+AGG + chr5.1:66803320-66803339 None:intergenic 25.0%
!! TAGTGTTACAATTTGGATTT+TGG - chr5.1:66803354-66803373 MS.gene81663:intron 25.0%
!! TTAAGTTGTTAATCCCAATA+GGG - chr5.1:66802733-66802752 MS.gene81663:intron 25.0%
!! TTTAGCTGGTATTTTCAAAT+GGG - chr5.1:66800947-66800966 MS.gene81663:intron 25.0%
!! TTTGATTGAAACTTTAAGGA+GGG + chr5.1:66803319-66803338 None:intergenic 25.0%
!! TTTTATCCTTGAAAACTATC+TGG - chr5.1:66800998-66801017 MS.gene81663:intron 25.0%
!!! ATGGTTGATTTTATGATTCT+GGG - chr5.1:66801093-66801112 MS.gene81663:CDS 25.0%
!!! TATGGTTGATTTTATGATTC+TGG - chr5.1:66801092-66801111 MS.gene81663:CDS 25.0%
!!! TCAAGTAGAATCTATTTTGA+AGG - chr5.1:66801673-66801692 MS.gene81663:CDS 25.0%
!!! TTTTAGCTGGTATTTTCAAA+TGG - chr5.1:66800946-66800965 MS.gene81663:intron 25.0%
!!! TTTTTTATTTCTCAAAGGTG+TGG - chr5.1:66803878-66803897 MS.gene81663:intron 25.0%
AAATAGATTCTACTTGAAGC+TGG + chr5.1:66801670-66801689 None:intergenic 30.0%
AACCTTCCCTTTCAAATTAT+TGG + chr5.1:66803942-66803961 None:intergenic 30.0%
AACTCAAATTAAGGTCTGTT+TGG - chr5.1:66801815-66801834 MS.gene81663:CDS 30.0%
AATATTATGCCATAAAGCAC+CGG - chr5.1:66801246-66801265 MS.gene81663:intron 30.0%
AATTGTAACACTACACATGT+TGG + chr5.1:66803347-66803366 None:intergenic 30.0%
ACATGTGTAGTGTTACAATT+TGG - chr5.1:66803347-66803366 MS.gene81663:intron 30.0%
AGGAATGAAGAAATGAACAA+TGG + chr5.1:66802318-66802337 None:intergenic 30.0%
ATCCAATAATTTGAAAGGGA+AGG - chr5.1:66803937-66803956 MS.gene81663:intron 30.0%
ATGCAGATAGCAAAAAATAG+CGG + chr5.1:66804184-66804203 None:intergenic 30.0%
ATTAACTCATGAGTCATAGA+GGG + chr5.1:66804787-66804806 None:intergenic 30.0%
CAGTGAGAATATCAATGTAT+TGG - chr5.1:66803524-66803543 MS.gene81663:intron 30.0%
CCTGTTATGATTTACATGTT+CGG - chr5.1:66803053-66803072 MS.gene81663:CDS 30.0%
GAAAATACCAGCTAAAAAAG+TGG + chr5.1:66800943-66800962 None:intergenic 30.0%
GAAATTGTAGCTTCTAATTC+TGG + chr5.1:66801569-66801588 None:intergenic 30.0%
GAACCTGACATTATTCAAAA+TGG + chr5.1:66802135-66802154 None:intergenic 30.0%
GAGCATCCAATAATTTGAAA+GGG - chr5.1:66803933-66803952 MS.gene81663:intron 30.0%
GATATACAATATGTAGAGCA+TGG + chr5.1:66802846-66802865 None:intergenic 30.0%
GGCAAAATAAATTCTACTCT+AGG - chr5.1:66801694-66801713 MS.gene81663:CDS 30.0%
TACAATCAAGTAAAGTTTGC+AGG + chr5.1:66804518-66804537 None:intergenic 30.0%
TAGAGGATTTCCAACTATAA+AGG - chr5.1:66803177-66803196 MS.gene81663:intron 30.0%
TCGAATAAACCAATCTAAAC+AGG + chr5.1:66802525-66802544 None:intergenic 30.0%
TCTAATACCATATTCCTGAA+GGG + chr5.1:66803161-66803180 None:intergenic 30.0%
TTATAGTTCATCTTTGGTTG+AGG + chr5.1:66805515-66805534 None:intergenic 30.0%
TTATTTGCATGTACAGGTAA+AGG - chr5.1:66803600-66803619 MS.gene81663:intron 30.0%
! AAAATGATGACGTTAGTTAC+AGG + chr5.1:66802770-66802789 None:intergenic 30.0%
! AGAGCATCCAATAATTTGAA+AGG - chr5.1:66803932-66803951 MS.gene81663:intron 30.0%
! AGATAGATGTCTTCTTTTTG+TGG - chr5.1:66803384-66803403 MS.gene81663:intron 30.0%
! AGGAATTGGAGTATCTTTAT+CGG + chr5.1:66804381-66804400 None:intergenic 30.0%
! ATTTTCTCTTGAAGAACTCA+TGG - chr5.1:66805480-66805499 MS.gene81663:CDS 30.0%
! GTAATGCATCAGGTTTTTAT+GGG - chr5.1:66802107-66802126 MS.gene81663:intron 30.0%
! TAAACATGAGTGTTGTCTAT+AGG - chr5.1:66804567-66804586 MS.gene81663:intron 30.0%
! TATCTAGTTTGTAATGCATC+AGG - chr5.1:66802097-66802116 MS.gene81663:intron 30.0%
! TGTAATGCATCAGGTTTTTA+TGG - chr5.1:66802106-66802125 MS.gene81663:intron 30.0%
! TGTTGATTAGTGTGTGAATA+TGG - chr5.1:66801074-66801093 MS.gene81663:CDS 30.0%
! TTGGTTGCTTTACATAGAAT+GGG + chr5.1:66802909-66802928 None:intergenic 30.0%
! TTTGGTTGCTTTACATAGAA+TGG + chr5.1:66802910-66802929 None:intergenic 30.0%
! TTTTATGATTCTGGGTTTTG+TGG - chr5.1:66801101-66801120 MS.gene81663:CDS 30.0%
! TTTTCTCTTGAAGAACTCAT+GGG - chr5.1:66805481-66805500 MS.gene81663:CDS 30.0%
!! GAAATATAATGGGTTCTCAT+TGG - chr5.1:66804987-66805006 MS.gene81663:intron 30.0%
!!! CAGGAGCTAATTTTTTACAA+TGG + chr5.1:66803904-66803923 None:intergenic 30.0%
!!! TGTTTTTTTACTTGCCTGTA+AGG + chr5.1:66804730-66804749 None:intergenic 30.0%
AACACCTTTCTTAACGTTCA+AGG + chr5.1:66805207-66805226 None:intergenic 35.0%
AAGGCAGCTACTGTATTAAA+GGG - chr5.1:66802235-66802254 MS.gene81663:intron 35.0%
AAGTACCTGTTAGACAGTTA+GGG - chr5.1:66802560-66802579 MS.gene81663:CDS 35.0%
AAGTAGATTCTACTTGAAGC+TGG + chr5.1:66801591-66801610 None:intergenic 35.0%
ACACAACATCTATGAAAGCA+CGG + chr5.1:66801391-66801410 None:intergenic 35.0%
AGAGAATTTGTGAAAGAAGC+TGG - chr5.1:66805355-66805374 MS.gene81663:intron 35.0%
CAACTGTTAATAACTGCTGA+AGG + chr5.1:66804687-66804706 None:intergenic 35.0%
CACTGACACATTTGTTTACA+TGG - chr5.1:66801300-66801319 MS.gene81663:intron 35.0%
CATAAGGGGAAAACAACTTA+TGG + chr5.1:66801923-66801942 None:intergenic 35.0%
CATTGTAAAGACAGAACCAT+GGG - chr5.1:66805423-66805442 MS.gene81663:CDS 35.0%
CATTTCTGTACAATGTACAC+TGG - chr5.1:66802450-66802469 MS.gene81663:intron 35.0%
CCGAACATGTAAATCATAAC+AGG + chr5.1:66803056-66803075 None:intergenic 35.0%
CTACTCTAGGTGATTCATTA+AGG - chr5.1:66801707-66801726 MS.gene81663:intron 35.0%
CTCCAAATACCAAGATTGTT+GGG + chr5.1:66804358-66804377 None:intergenic 35.0%
CTCTAATACCATATTCCTGA+AGG + chr5.1:66803162-66803181 None:intergenic 35.0%
CTCTAGTAACTTCGATGAAT+TGG - chr5.1:66803711-66803730 MS.gene81663:intron 35.0%
CTGGAAATACATACCTTTGA+TGG - chr5.1:66802469-66802488 MS.gene81663:intron 35.0%
CTTAATTCCCTTCAGGAATA+TGG - chr5.1:66803151-66803170 MS.gene81663:intron 35.0%
CTTCAGGAATATGGTATTAG+AGG - chr5.1:66803160-66803179 MS.gene81663:intron 35.0%
CTTTGTTGACGAATGCTTAA+TGG - chr5.1:66805069-66805088 MS.gene81663:intron 35.0%
GAATCAGTTTCGTCAAATAG+CGG - chr5.1:66804042-66804061 MS.gene81663:CDS 35.0%
GATAGGTTCATGTAAAAGTG+AGG - chr5.1:66801512-66801531 MS.gene81663:intron 35.0%
GATTAACTCATGAGTCATAG+AGG + chr5.1:66804788-66804807 None:intergenic 35.0%
GCTTCAAGTAGAATCTACTT+TGG - chr5.1:66801591-66801610 MS.gene81663:CDS 35.0%
GTAAAAAATTAGCTCCTGAG+TGG - chr5.1:66803906-66803925 MS.gene81663:intron 35.0%
GTAGAATTACATGTTCAGTC+AGG + chr5.1:66803815-66803834 None:intergenic 35.0%
GTTTGATGAAGATGCATTGT+TGG + chr5.1:66805037-66805056 None:intergenic 35.0%
TAAGTACCTGTTAGACAGTT+AGG - chr5.1:66802559-66802578 MS.gene81663:CDS 35.0%
TACAATATGTAGAGCATGGT+AGG + chr5.1:66802842-66802861 None:intergenic 35.0%
TCAAGTAGAATCTACTTTGG+AGG - chr5.1:66801594-66801613 MS.gene81663:CDS 35.0%
TTAAATGGAAAAGCAACAGG+TGG - chr5.1:66803640-66803659 MS.gene81663:intron 35.0%
TTACATAGAATGGGAAGACT+AGG + chr5.1:66802900-66802919 None:intergenic 35.0%
TTCCCAACAATCTTGGTATT+TGG - chr5.1:66804353-66804372 MS.gene81663:intron 35.0%
TTGAAAGGGAAGGTTAAACT+GGG - chr5.1:66803947-66803966 MS.gene81663:intron 35.0%
TTGTTGAATTCTTTGCTCCA+TGG - chr5.1:66802176-66802195 MS.gene81663:intron 35.0%
TTTGAAAGGGAAGGTTAAAC+TGG - chr5.1:66803946-66803965 MS.gene81663:intron 35.0%
! AAACACCCAGATAGTTTTCA+AGG + chr5.1:66801007-66801026 None:intergenic 35.0%
! GGTATTGAACCTGTTTAGAT+TGG - chr5.1:66802513-66802532 MS.gene81663:intron 35.0%
! GTCTTTTCTTAATTCCCTTC+AGG - chr5.1:66803144-66803163 MS.gene81663:intron 35.0%
! GTGTTGTCTATAGGATGTTT+TGG - chr5.1:66804576-66804595 MS.gene81663:intron 35.0%
! TATTCGTATTTTCTTGGGGA+GGG + chr5.1:66802048-66802067 None:intergenic 35.0%
! TTATTCGTATTTTCTTGGGG+AGG + chr5.1:66802049-66802068 None:intergenic 35.0%
! TTGTAGAATTTTTCGCACCT+TGG - chr5.1:66803758-66803777 MS.gene81663:intron 35.0%
! TTTGCTATGTTGCTGTATTG+TGG - chr5.1:66801039-66801058 MS.gene81663:intron 35.0%
!! AATATAGGAAGTACTCACCA+AGG + chr5.1:66803778-66803797 None:intergenic 35.0%
!! CTTTTGAAGGAACGGTTAAA+TGG - chr5.1:66803625-66803644 MS.gene81663:intron 35.0%
!! TAAAGGCTCTTTTGAAGGAA+CGG - chr5.1:66803617-66803636 MS.gene81663:intron 35.0%
!! TGTCAGGTTCTGAATTCAAA+TGG - chr5.1:66802145-66802164 MS.gene81663:intron 35.0%
!!! GATGTTTTGGAAGAGAAATG+TGG - chr5.1:66804589-66804608 MS.gene81663:intron 35.0%
!!! GTGCCATTTTGAATAATGTC+AGG - chr5.1:66802129-66802148 MS.gene81663:intron 35.0%
AAAAAAGTGGGATCACGAAC+TGG + chr5.1:66800930-66800949 None:intergenic 40.0%
AAAAAGTGGGATCACGAACT+GGG + chr5.1:66800929-66800948 None:intergenic 40.0%
AAACCACCAGTTGATTACCA+AGG - chr5.1:66803214-66803233 MS.gene81663:intron 40.0%
AAATGTGTCAGTGTCTGTGT+CGG + chr5.1:66801293-66801312 None:intergenic 40.0%
ACAAATGTCATGTAAGCGAC+AGG + chr5.1:66802984-66803003 None:intergenic 40.0%
ACCTTGGACTTGAAGTTGTT+AGG + chr5.1:66800880-66800899 None:intergenic 40.0%
ACTCTTCTTGCAACATCACT+TGG - chr5.1:66803483-66803502 MS.gene81663:intron 40.0%
ACTTTCCCTAACTGTCTAAC+AGG + chr5.1:66802568-66802587 None:intergenic 40.0%
AGATACTCCAATTCCTTACG+AGG - chr5.1:66804385-66804404 MS.gene81663:intron 40.0%
AGTTCAAAAGGAGTCCTTAC+AGG - chr5.1:66804713-66804732 MS.gene81663:intron 40.0%
ATGAGCAGGTTCAATGTTCA+AGG - chr5.1:66804329-66804348 MS.gene81663:intron 40.0%
ATGCACTTCAACAGGTTTGT+TGG - chr5.1:66803266-66803285 MS.gene81663:intron 40.0%
ATGCTGACAAGGTAAGCTTA+TGG - chr5.1:66803984-66804003 MS.gene81663:intron 40.0%
CAGTTGCAGAGAAGTTCAAA+AGG - chr5.1:66804701-66804720 MS.gene81663:intron 40.0%
CCATTGTAAAGACAGAACCA+TGG - chr5.1:66805422-66805441 MS.gene81663:CDS 40.0%
CGGTTAAATGGAAAAGCAAC+AGG - chr5.1:66803637-66803656 MS.gene81663:intron 40.0%
GAAGACTAGGAATGTAACGA+AGG + chr5.1:66802887-66802906 None:intergenic 40.0%
GAAGGCAGCTACTGTATTAA+AGG - chr5.1:66802234-66802253 MS.gene81663:intron 40.0%
GATACTCCAATTCCTTACGA+GGG - chr5.1:66804386-66804405 MS.gene81663:intron 40.0%
GCTCCAAATACCAAGATTGT+TGG + chr5.1:66804359-66804378 None:intergenic 40.0%
GGTCTTGAACAGCTATGTAT+GGG - chr5.1:66805109-66805128 MS.gene81663:intron 40.0%
GGTGCAAACACCTTTATAGT+TGG + chr5.1:66803190-66803209 None:intergenic 40.0%
GGTTCTGTCTTTACAATGGT+GGG + chr5.1:66805421-66805440 None:intergenic 40.0%
GGTTGCAAAGTGTACTTACA+TGG - chr5.1:66804965-66804984 MS.gene81663:intron 40.0%
GTTGTGTATGTTTCGTTCTG+TGG - chr5.1:66801404-66801423 MS.gene81663:intron 40.0%
TCAAGGATTCCCAACAATCT+TGG - chr5.1:66804346-66804365 MS.gene81663:intron 40.0%
TCCTAACAACTTCAAGTCCA+AGG - chr5.1:66800876-66800895 MS.gene81663:CDS 40.0%
TGAAGTGCATATTCTGCGAT+TGG + chr5.1:66803256-66803275 None:intergenic 40.0%
TGCTATAGTGCTTCTATAGC+TGG + chr5.1:66804140-66804159 None:intergenic 40.0%
TTTGTCAGTCTCTAATGAGC+AGG - chr5.1:66804315-66804334 MS.gene81663:intron 40.0%
! ACAGGTAAAGGCTCTTTTGA+AGG - chr5.1:66803612-66803631 MS.gene81663:intron 40.0%
! ATGATGACGTTAGTTACAGG+AGG + chr5.1:66802767-66802786 None:intergenic 40.0%
! CCATGGTTCTGTCTTTACAA+TGG + chr5.1:66805425-66805444 None:intergenic 40.0%
! CTATATAGCTCTGTCACTTC+TGG + chr5.1:66804476-66804495 None:intergenic 40.0%
! CTATCTGGGTGTTTTGTGTT+TGG - chr5.1:66801013-66801032 MS.gene81663:intron 40.0%
! GTAGCCTTGAACGTTAAGAA+AGG - chr5.1:66805200-66805219 MS.gene81663:intron 40.0%
! TAAGGCTCTGACTCCTATAT+GGG - chr5.1:66802210-66802229 MS.gene81663:intron 40.0%
! TAATCAACTGGTGGTTTTCC+AGG + chr5.1:66803211-66803230 None:intergenic 40.0%
! TACATACCTTTGATGGACCA+CGG - chr5.1:66802476-66802495 MS.gene81663:intron 40.0%
! TAGTTCTACCGAAGAAGAAG+CGG + chr5.1:66803689-66803708 None:intergenic 40.0%
! TGGTTCTGTCTTTACAATGG+TGG + chr5.1:66805422-66805441 None:intergenic 40.0%
! TTAGGAGTGAGTTGAAGAAC+AGG + chr5.1:66800862-66800881 None:intergenic 40.0%
!! ACTATAAAGGTGTTTGCACC+TGG - chr5.1:66803190-66803209 MS.gene81663:intron 40.0%
!! AGTTCAAAAGCACTCTTGAG+AGG + chr5.1:66805236-66805255 None:intergenic 40.0%
!! GGTTTGTTGGAATCTCTTCT+TGG - chr5.1:66803279-66803298 MS.gene81663:intron 40.0%
!! TGCGATTGGTTTAACATCTC+TGG + chr5.1:66803242-66803261 None:intergenic 40.0%
AATTCTTTGCTCCATGGTGC+GGG - chr5.1:66802182-66802201 MS.gene81663:intron 45.0%
ACGTTCAAGGCTACTAATGC+TGG + chr5.1:66805194-66805213 None:intergenic 45.0%
AGAAACCACCGCTTCTTCTT+CGG - chr5.1:66803678-66803697 MS.gene81663:intron 45.0%
ATCCAAAATGTCGGGAAGGA+AGG + chr5.1:66804638-66804657 None:intergenic 45.0%
ATCCTTTCTCACGCTCTCTA+CGG - chr5.1:66800826-66800845 MS.gene81663:CDS 45.0%
CAACACCAACTTTCTGCTCA+AGG + chr5.1:66805157-66805176 None:intergenic 45.0%
CGCAGAATATGCACTTCAAC+AGG - chr5.1:66803258-66803277 MS.gene81663:intron 45.0%
CGCCTTGGAATCCAAAATGT+CGG + chr5.1:66804647-66804666 None:intergenic 45.0%
CTCTAGTGCGAATGATTCGA+TGG + chr5.1:66804429-66804448 None:intergenic 45.0%
GAACCATGGGATGGAAAAGA+TGG - chr5.1:66805436-66805455 MS.gene81663:CDS 45.0%
GAATTCTTTGCTCCATGGTG+CGG - chr5.1:66802181-66802200 MS.gene81663:intron 45.0%
GCCTTGGAATCCAAAATGTC+GGG + chr5.1:66804646-66804665 None:intergenic 45.0%
GGGTCTTGAACAGCTATGTA+TGG - chr5.1:66805108-66805127 MS.gene81663:intron 45.0%
GTAAAGACAGAACCATGGGA+TGG - chr5.1:66805427-66805446 MS.gene81663:CDS 45.0%
GTAGAGCATGGTAGGATCTT+GGG + chr5.1:66802834-66802853 None:intergenic 45.0%
GTCAGTGTCCATGTCGTATT+AGG - chr5.1:66801362-66801381 MS.gene81663:intron 45.0%
TCTGACTCCTATATGGGAGA+AGG - chr5.1:66802216-66802235 MS.gene81663:intron 45.0%
TGGAATCCAAAATGTCGGGA+AGG + chr5.1:66804642-66804661 None:intergenic 45.0%
TGTAGAGCATGGTAGGATCT+TGG + chr5.1:66802835-66802854 None:intergenic 45.0%
TTTGTGAAAGAAGCTGGACG+TGG - chr5.1:66805361-66805380 MS.gene81663:intron 45.0%
! AGTGAGTTGAAGAACAGGTG+AGG + chr5.1:66800857-66800876 None:intergenic 45.0%
! ATTTTGGATTCCAAGGCGGA+GGG - chr5.1:66804649-66804668 MS.gene81663:intron 45.0%
! CGACATTTTGGATTCCAAGG+CGG - chr5.1:66804645-66804664 MS.gene81663:intron 45.0%
! GAAGCACTATAGCACTGTAG+TGG - chr5.1:66804146-66804165 MS.gene81663:intron 45.0%
! GTAAGGCTCTGACTCCTATA+TGG - chr5.1:66802209-66802228 MS.gene81663:intron 45.0%
! GTTTAACATCTCTGGCTCCT+TGG + chr5.1:66803234-66803253 None:intergenic 45.0%
! TATAGCTCTGTCACTTCTGG+AGG + chr5.1:66804473-66804492 None:intergenic 45.0%
! TCCCGACATTTTGGATTCCA+AGG - chr5.1:66804642-66804661 MS.gene81663:intron 45.0%
! TCTCCATCTTTTCCATCCCA+TGG + chr5.1:66805442-66805461 None:intergenic 45.0%
! TCTGTCTTTACAATGGTGGG+AGG + chr5.1:66805418-66805437 None:intergenic 45.0%
! TGTTGACTGTGATGCTGACA+AGG - chr5.1:66803973-66803992 MS.gene81663:intron 45.0%
! TTCCTTCCTTCCCGACATTT+TGG - chr5.1:66804633-66804652 MS.gene81663:intron 45.0%
! TTGGATGCTCTTTTCCACTC+AGG + chr5.1:66803923-66803942 None:intergenic 45.0%
!! AAAGTTGGTGTTGGTGGGTA+TGG - chr5.1:66805164-66805183 MS.gene81663:intron 45.0%
!! AGCAGAAAGTTGGTGTTGGT+GGG - chr5.1:66805159-66805178 MS.gene81663:intron 45.0%
!! CTTGAGCAGAAAGTTGGTGT+TGG - chr5.1:66805155-66805174 MS.gene81663:intron 45.0%
!!! CGTGATCCCACTTTTTTAGC+TGG - chr5.1:66800933-66800952 MS.gene81663:CDS 45.0%
ACCACGGACGATGCAAAACA+TGG - chr5.1:66802492-66802511 MS.gene81663:intron 50.0%
ACGACATGGACACTGACATG+TGG + chr5.1:66801359-66801378 None:intergenic 50.0%
AGGAGGACACTTGACCCTAT+TGG + chr5.1:66802750-66802769 None:intergenic 50.0%
ATCATTCGCACTAGAGCAGC+TGG - chr5.1:66804433-66804452 MS.gene81663:intron 50.0%
CACGGACACCTAATACGACA+TGG + chr5.1:66801373-66801392 None:intergenic 50.0%
CCAACTTTCTGCTCAAGGTC+TGG + chr5.1:66805152-66805171 None:intergenic 50.0%
CCAGACCTTGAGCAGAAAGT+TGG - chr5.1:66805149-66805168 MS.gene81663:intron 50.0%
CTAGCACCCTCGTAAGGAAT+TGG + chr5.1:66804395-66804414 None:intergenic 50.0%
GCAGGAGAACAAACACTCAC+TGG + chr5.1:66804500-66804519 None:intergenic 50.0%
GGAAAACCTGAGCCAGAGAT+TGG + chr5.1:66802297-66802316 None:intergenic 50.0%
GGAGGACACTTGACCCTATT+GGG + chr5.1:66802749-66802768 None:intergenic 50.0%
GTAGCTGCCTTCTCCCATAT+AGG + chr5.1:66802226-66802245 None:intergenic 50.0%
TGCTGATGCTCACCAATCTC+TGG - chr5.1:66802282-66802301 MS.gene81663:intron 50.0%
TTCTACCGAAGAAGAAGCGG+TGG + chr5.1:66803686-66803705 None:intergenic 50.0%
! AACCGTAGAGAGCGTGAGAA+AGG + chr5.1:66800831-66800850 None:intergenic 50.0%
! ACCATGTTTTGCATCGTCCG+TGG + chr5.1:66802496-66802515 None:intergenic 50.0%
! CATTTTGGATTCCAAGGCGG+AGG - chr5.1:66804648-66804667 MS.gene81663:intron 50.0%
! CTGGCTCCTTGGTAATCAAC+TGG + chr5.1:66803223-66803242 None:intergenic 50.0%
! GCTCCTTGGTAATCAACTGG+TGG + chr5.1:66803220-66803239 None:intergenic 50.0%
! TTTTGGATTCCAAGGCGGAG+GGG - chr5.1:66804650-66804669 MS.gene81663:intron 50.0%
!! CATAAAGCACCGGCACTCTT+CGG - chr5.1:66801256-66801275 MS.gene81663:intron 50.0%
!! GAGCAGAAAGTTGGTGTTGG+TGG - chr5.1:66805158-66805177 MS.gene81663:intron 50.0%
AAGCTGGACGTGGAGGCAAA+GGG - chr5.1:66805371-66805390 MS.gene81663:intron 55.0%
AGCTATGTATGGGCAGCTGC+CGG - chr5.1:66805119-66805138 MS.gene81663:intron 55.0%
CATCGTCCGTGGTCCATCAA+AGG + chr5.1:66802485-66802504 None:intergenic 55.0%
CTCAAGGTCTGGCTGCTTAC+CGG + chr5.1:66805141-66805160 None:intergenic 55.0%
GTGAAAGAAGCTGGACGTGG+AGG - chr5.1:66805364-66805383 MS.gene81663:intron 55.0%
! ACGCCTAATCCGAAGAGTGC+CGG + chr5.1:66801268-66801287 None:intergenic 55.0%
! GCAGTTCTAGCACCCTCGTA+AGG + chr5.1:66804401-66804420 None:intergenic 55.0%
! TGCTCACCAATCTCTGGCTC+AGG - chr5.1:66802288-66802307 MS.gene81663:intron 55.0%
!! CGAAGAGTGCCGGTGCTTTA+TGG + chr5.1:66801258-66801277 None:intergenic 55.0%
GAAGCTGGACGTGGAGGCAA+AGG - chr5.1:66805370-66805389 MS.gene81663:intron 60.0%
GGCAAAGGGAACTTGCCCCT+AGG - chr5.1:66805385-66805404 MS.gene81663:intron 60.0%
! GCACCGGCACTCTTCGGATT+AGG - chr5.1:66801262-66801281 MS.gene81663:intron 60.0%
! TCCATGGTGCGGGCACTGTA+AGG - chr5.1:66802192-66802211 MS.gene81663:intron 60.0%
! TCTGTTTCTCCCCTCCGCCT+TGG + chr5.1:66804662-66804681 None:intergenic 60.0%
!! GGTGGGAGGAGTGTCACCTA+GGG + chr5.1:66805404-66805423 None:intergenic 60.0%
!! GTGGGAGGAGTGTCACCTAG+GGG + chr5.1:66805403-66805422 None:intergenic 60.0%
!! TGGTGGGAGGAGTGTCACCT+AGG + chr5.1:66805405-66805424 None:intergenic 60.0%
GCCTTACAGTGCCCGCACCA+TGG + chr5.1:66802196-66802215 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 66800775 66805534 66800775 ID=MS.gene81663
chr5.1 mRNA 66800775 66805534 66800775 ID=MS.gene81663.t1;Parent=MS.gene81663
chr5.1 exon 66805412 66805534 66805412 ID=MS.gene81663.t1.exon1;Parent=MS.gene81663.t1
chr5.1 CDS 66805412 66805534 66805412 ID=cds.MS.gene81663.t1;Parent=MS.gene81663.t1
chr5.1 exon 66804000 66804158 66804000 ID=MS.gene81663.t1.exon2;Parent=MS.gene81663.t1
chr5.1 CDS 66804000 66804158 66804000 ID=cds.MS.gene81663.t1;Parent=MS.gene81663.t1
chr5.1 exon 66803030 66803143 66803030 ID=MS.gene81663.t1.exon3;Parent=MS.gene81663.t1
chr5.1 CDS 66803030 66803143 66803030 ID=cds.MS.gene81663.t1;Parent=MS.gene81663.t1
chr5.1 exon 66802530 66802693 66802530 ID=MS.gene81663.t1.exon4;Parent=MS.gene81663.t1
chr5.1 CDS 66802530 66802693 66802530 ID=cds.MS.gene81663.t1;Parent=MS.gene81663.t1
chr5.1 exon 66802315 66802414 66802315 ID=MS.gene81663.t1.exon5;Parent=MS.gene81663.t1
chr5.1 CDS 66802315 66802414 66802315 ID=cds.MS.gene81663.t1;Parent=MS.gene81663.t1
chr5.1 exon 66801810 66801986 66801810 ID=MS.gene81663.t1.exon6;Parent=MS.gene81663.t1
chr5.1 CDS 66801810 66801986 66801810 ID=cds.MS.gene81663.t1;Parent=MS.gene81663.t1
chr5.1 exon 66801575 66801720 66801575 ID=MS.gene81663.t1.exon7;Parent=MS.gene81663.t1
chr5.1 CDS 66801575 66801720 66801575 ID=cds.MS.gene81663.t1;Parent=MS.gene81663.t1
chr5.1 exon 66801042 66801188 66801042 ID=MS.gene81663.t1.exon8;Parent=MS.gene81663.t1
chr5.1 CDS 66801042 66801188 66801042 ID=cds.MS.gene81663.t1;Parent=MS.gene81663.t1
chr5.1 exon 66800775 66800952 66800775 ID=MS.gene81663.t1.exon9;Parent=MS.gene81663.t1
chr5.1 CDS 66800775 66800952 66800775 ID=cds.MS.gene81663.t1;Parent=MS.gene81663.t1
Gene Sequence

>MS.gene81663

ATGGCGAAACTCTCATTCATTGCTGTAACTATCTTTCTCTTCAACAATCTCATCCTTTCTCACGCTCTCTACGGTTCTTCCTCACCTGTTCTTCAACTCACTCCTAACAACTTCAAGTCCAAGGTTTAATCTTTTTTCAATTTTTCATTGACCCAGTTCGTGATCCCACTTTTTTAGCTGGTATTTTCAAATGGGTATTGCGTAGAATTGTTAAATTTTGTAGTTTTATCCTTGAAAACTATCTGGGTGTTTTGTGTTTGGAATTTTGCTATGTTGCTGTATTGTGGTGTTTCTGTTTTTGTTGATTAGTGTGTGAATATGGTTGATTTTATGATTCTGGGTTTTGTGGAATTACAATTTTTTGATTTGTGTGATATATATAATGTAACAAATCTGTTGATTCATACTATTATGCAAGTATGTGTTAATGTTGTGTTTTATCATCTGAAAAGATCTTTTAATTCATGTGTTAATATTATGCCATAAAGCACCGGCACTCTTCGGATTAGGCGTGTCCGACACAGACACTGACACATTTGTTTACATGGAATTATGTCATTTTCTAAAATTATTATCGGTTTCCACATGTCAGTGTCCATGTCGTATTAGGTGTCCGTGCTTTCATAGATGTTGTGTATGTTTCGTTCTGTGGTGAGAAAAATTGATTTTGAAAGAATTGATTATGTGAAATTGATTAGCACTAAAATTTAGTTGAAGGTAAAGTGATTTTATGTTTGGATAGGTTCATGTAAAAGTGAGGTGAACAATAAATTTGAGTGTAAAAAACAATACCAGAATTAGAAGCTACAATTTCCAGCTTCAAGTAGAATCTACTTTGGAGGCAAAATCAATTATACTCTAAAAAAAATTCTAGAATTAGAAGCTACAATTTCCAGCTTCAAGTAGAATCTATTTTGAAGGCAAAATAAATTCTACTCTAGGTGATTCATTAAGGACGTTTCGATTTAATCATAACTACTTCTAAAGTCACACATATGATTGCATGTGATTCATTGCTGTAAATATTTTTATACTAACTAAACTCAAATTAAGGTCTGTTTGGATTGTTTTATATGAACTTATCTATTTACATTAGCACTTATAAGACTGTTTGAGAGAACTTACGAAAATTGCTCATGACGTGTCCATAAGTTGTTTTCCCCTTATGTATAAAGATAAATTATACATATGCACTTAATTAAGTTGTTTATCCAAACAGTCTTTTATACTATTGTATTATGATTGGACTTTGATATGATGAAATACGAGTCCCTCCCCAAGAAAATACGAATAATTTTTATGAGTTAGCTTTTTCTTTGCTTTATCTAGTTTGTAATGCATCAGGTTTTTATGGGTGCCATTTTGAATAATGTCAGGTTCTGAATTCAAATGGAGTTGTTCTTGTTGAATTCTTTGCTCCATGGTGCGGGCACTGTAAGGCTCTGACTCCTATATGGGAGAAGGCAGCTACTGTATTAAAGGGTGTAGTTACTGTTGCAGCACTTGATGCTGATGCTCACCAATCTCTGGCTCAGGTTTTCCATTGTTCATTTCTTCATTCCTCAGATTCAGTATTTAAATTTAAATGACATATATTAAAGTAAGACTATGCTGCATGTGTTGTTTTCATCTTACATTTAACCTTTATGAATATTATGTGTTATTATATGTTTCACATTTCTGTACAATGTACACTGGAAATACATACCTTTGATGGACCACGGACGATGCAAAACATGGTATTGAACCTGTTTAGATTGGTTTATTCGAGTTAACTATTGACATAAGTACCTGTTAGACAGTTAGGGAAAGTTTATGAAAACTGTGTATGACATGTTCATAAGCTCTATGATAACTTATGAAAACAGCTTATAGCTTATATGAAAAACAGGTTGAATTTGTTTTATCTTTTTTATAGAAATAGTTTCTACATAAACACTTGTATGATAAGTGCTTAATTAAGTTGTTAATCCCAATAGGGTCAAGTGTCCTCCTGTAACTAACGTCATCATTTTGATCATTTTAGATATAAAATTGTTTGATGTTTTAGGGCATGCCCAAGATCCTACCATGCTCTACATATTGTATATCCTTATATGTAAAGTTTTTCCTTCGTTACATTCCTAGTCTTCCCATTCTATGTAAAGCAACCAAAGAATAAATTACATTAGTGAATAAGAATATGTTTGTTGAGATTATTTATTTTCCTGTCGCTTACATGACATTTGTTATTGTTTGCATGATGAAATATTTATTCATCTAATGCTTGTATCTTTCTCCTGTTATGATTTACATGTTCGGCTATTTTCTTCATTTATTTTATTATAACTGTAAATTGCAAAATTTGAAAAAATCATTTAGATTTTTGTGTCTTTTCTTAATTCCCTTCAGGAATATGGTATTAGAGGATTTCCAACTATAAAGGTGTTTGCACCTGGAAAACCACCAGTTGATTACCAAGGAGCCAGAGATGTTAAACCAATCGCAGAATATGCACTTCAACAGGTTTGTTGGAATCTCTTCTTGGATGTTTTAACATTTCCCTCCTTAAAGTTTCAATCAAATATTTCCAACATGTGTAGTGTTACAATTTGGATTTTGGATAGAGTAGATAGATGTCTTCTTTTTGTGGAAAACAACAATTTCTTGTACTTTTATGAAAAATTACTACAAATAAAGGAGAATTTGATTAATAACTTGAAAGGGAAACTCTTCTTGCAACATCACTTGGTAGTGTACAAAATTTCAGCAGTGAGAATATCAATGTATTGGGATTAGGGTTGACTGTTCAGTGACTACTGCTTGTAATATTGTGTGATTATAGTTTATTTGCATGTACAGGTAAAGGCTCTTTTGAAGGAACGGTTAAATGGAAAAGCAACAGGTGGATCAAATGAAAAAAAAGAAACCACCGCTTCTTCTTCGGTAGAACTAAACTCTAGTAACTTCGATGAATTGGTTATCAAAAGCAAAGAACTTTGGATTGTAGAATTTTTCGCACCTTGGTGAGTACTTCCTATATTTCAATTATTTATTACCTGACTGAACATGTAATTCTACTTTCAGATTTGCAGTTTCTAAATCTAATAACAACTTTTGTCTTTTTTTTATTTCTCAAAGGTGTGGCCATTGTAAAAAATTAGCTCCTGAGTGGAAAAGAGCATCCAATAATTTGAAAGGGAAGGTTAAACTGGGTCATGTTGACTGTGATGCTGACAAGGTAAGCTTATGGAGTATATCTAATCTCATAGTAGTTAATAAAAATTAGAATCAGTTTCGTCAAATAGCGGCTATAGCGTAGCAGAATTTTAACAAACTGTTATTGTTCGGTGATATACAATTTAGCAAGTGTTGTCAAATAGCCAGCTATAGAAGCACTATAGCACTGTAGTGGAACTTTAACAAACCGCTATTTTTTGCTATCTGCATGATGATCAAGATGATCTCAACCTTACTTTTCAATTTATTTATATTATTAGTGTTCAATATTAAGCTTTTTATTCTGCCTTTCAGTTTATATTATTCTGACAGGATAATTTTTTTGTCAGTCTCTAATGAGCAGGTTCAATGTTCAAGGATTCCCAACAATCTTGGTATTTGGAGCCGATAAAGATACTCCAATTCCTTACGAGGGTGCTAGAACTGCATCAGCCATCGAATCATTCGCACTAGAGCAGCTGGAAACAAATGTTGCTCCTCCAGAAGTGACAGAGCTATATAGTCCAGTGAGTGTTTGTTCTCCTGCAAACTTTACTTGATTGTACACTGATTTGAAAGAAAGAATATAAGATATAAACATGAGTGTTGTCTATAGGATGTTTTGGAAGAGAAATGTGGTTCTGCTGCTATCTGTTTTGTTTCCTTCCTTCCCGACATTTTGGATTCCAAGGCGGAGGGGAGAAACAGATACCTTCAGCAGTTATTAACAGTTGCAGAGAAGTTCAAAAGGAGTCCTTACAGGCAAGTAAAAAAACATTTTGCTTACATTTCATAGTTCATACTTTCACATCCCTCTATGACTCATGAGTTAATCTTTCAAATTCAACTTTTTCGGTTTATACTATTGATTTTGTAAATGCTTTACAGACATGTTTAAATCAAGATAAAAGGCAACATGCATTGTCAGTGTAAACTAGTTTTACACTGACGTTCAATGTGAATCGTGCATGTTGCAGTTATTTTTAAATTGCGGTTGCAAAGTGTACTTACATGGAAATATAATGGGTTCTCATTGGATATCAGTGTAAAACTATTTTGCACCAACAATGCATCTTCATCAAACTCTTAAATCAGTCTTTGTTGACGAATGCTTAATGGTTTTTTGTTTGAATTTGGGTCTTGAACAGCTATGTATGGGCAGCTGCCGGTAAGCAGCCAGACCTTGAGCAGAAAGTTGGTGTTGGTGGGTATGGTTATCCAGCATTAGTAGCCTTGAACGTTAAGAAAGGTGTTTATGCTCCTCTCAAGAGTGCTTTTGAACTTGACCAAATTATGTAAGTCTATTTTTCTAATTTTATGCTAAATAGTTGGCGCTTTACTGAAGCAAACAAGTACTTGAACTTTATTGATTTGTTTTCTTCAGAGAATTTGTGAAAGAAGCTGGACGTGGAGGCAAAGGGAACTTGCCCCTAGGTGACACTCCTCCCACCATTGTAAAGACAGAACCATGGGATGGAAAAGATGGAGAAATAATTGAGGAAGATGAATTTTCTCTTGAAGAACTCATGGGAGATGATGCCTCAACCAAAGATGAACTATAA

Protein sequence

>MS.gene81663.t1

MAKLSFIAVTIFLFNNLILSHALYGSSSPVLQLTPNNFKSKVLNSNGVVLVEFFAPWCGHCKALTPIWEKAATVLKGVVTVAALDADAHQSLAQEYGIRGFPTIKVFAPGKPPVDYQGARDVKPIAEYALQQVKALLKERLNGKATGGSNEKKETTASSSVELNSSNFDELVIKSKELWIVEFFAPWCGHCKKLAPEWKRASNNLKGKVKLGHVDCDADKSLMSRFNVQGFPTILVFGADKDTPIPYEGARTASAIESFALEQLETNVAPPEVTELYSPDVLEEKCGSAAICFVSFLPDILDSKAEGRNRYLQQLLTVAEKFKRSPYSYVWAAAGKQPDLEQKVGVGGYGYPALVALNVKKGVYAPLKSAFELDQIIEFVKEAGRGGKGNLPLGDTPPTIVKTEPWDGKDGEIIEEDEFSLEELMGDDASTKDEL