AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81658


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81658.t1 MTR_5g084930 98.621 435 6 0 1 435 1 435 0.0 881
MS.gene81658.t1 MTR_2g021750 84.211 133 21 0 1 133 1 133 1.87e-72 232
MS.gene81658.t1 MTR_2g021750 44.037 109 60 1 156 264 26 133 2.06e-23 100
MS.gene81658.t1 MTR_7g112040 33.456 272 155 8 1 267 3 253 9.40e-40 146
MS.gene81658.t1 MTR_7g112040 42.308 130 67 4 157 280 23 150 2.67e-21 95.1
MS.gene81658.t1 MTR_1g087520 34.583 240 137 5 33 267 34 258 3.81e-39 144
MS.gene81658.t1 MTR_1g087520 52.041 98 44 2 28 122 147 244 5.79e-24 102
MS.gene81658.t1 MTR_1g087520 40.625 128 68 4 163 284 34 159 2.76e-19 89.4
MS.gene81658.t1 MTR_3g088220 42.202 109 56 4 30 132 35 142 4.87e-17 83.6
MS.gene81658.t1 MTR_3g088220 34.884 172 93 7 163 329 38 195 1.61e-16 82.0
MS.gene81658.t1 MTR_3g088220 32.381 105 69 1 26 128 375 479 2.44e-11 65.9
MS.gene81658.t1 MTR_1g096790 41.176 102 55 3 30 128 28 127 9.04e-17 82.4
MS.gene81658.t1 MTR_1g096790 29.075 227 129 7 163 382 31 232 3.80e-15 77.4
MS.gene81658.t1 MTR_2g094180 41.600 125 65 4 135 256 55 174 1.73e-14 75.9
MS.gene81658.t1 MTR_2g094180 51.220 82 38 2 30 110 80 160 3.93e-13 71.6
MS.gene81658.t1 MTR_2g094180 32.609 138 87 3 36 169 424 559 7.57e-12 67.8
MS.gene81658.t1 MTR_2g094180 27.184 206 132 6 64 259 322 519 1.47e-11 66.6
MS.gene81658.t1 MTR_2g079420 27.517 149 98 2 107 245 9 157 2.39e-14 71.2
MS.gene81658.t1 MTR_2g079420 34.653 101 66 0 11 111 51 151 3.32e-13 68.2
MS.gene81658.t1 MTR_8g059015 41.463 82 48 0 30 111 73 154 2.95e-14 71.2
MS.gene81658.t1 MTR_8g059015 25.131 191 123 6 72 259 2 175 2.39e-12 65.5
MS.gene81658.t1 MTR_1g114290 34.483 116 72 2 24 138 64 176 1.66e-13 68.9
MS.gene81658.t1 MTR_1g114290 30.631 111 73 1 153 263 63 169 7.15e-13 67.4
MS.gene81658.t1 MTR_2g093680 27.966 118 82 2 17 132 29 145 3.45e-13 67.8
MS.gene81658.t1 MTR_2g093680 28.333 120 83 2 156 273 37 155 5.03e-12 64.3
MS.gene81658.t1 MTR_1g098660 32.558 86 58 0 34 119 66 151 6.68e-13 67.0
MS.gene81658.t1 MTR_1g098660 29.808 104 66 3 166 268 68 165 2.72e-11 62.4
MS.gene81658.t1 MTR_2g079340 41.975 81 47 0 31 111 37 117 9.41e-13 66.2
MS.gene81658.t1 MTR_2g079340 36.620 71 45 0 167 237 43 113 3.41e-11 62.0
MS.gene81658.t1 MTR_4g059450 48.421 95 40 5 30 120 102 191 1.51e-12 69.7
MS.gene81658.t1 MTR_2g079400 34.513 113 68 1 5 111 3 115 5.31e-12 63.5
MS.gene81658.t1 MTR_3g089065 35.632 87 56 0 33 119 73 159 9.78e-12 63.9
MS.gene81658.t1 MTR_4g080800 32.967 91 52 2 160 242 143 232 2.24e-11 65.9
MS.gene81658.t1 MTR_4g085880 36.905 84 50 1 31 111 63 146 6.09e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81658.t1 AT1G04980 72.523 444 112 4 1 435 5 447 0.0 679
MS.gene81658.t1 AT2G32920 73.944 426 106 4 14 435 16 440 0.0 655
MS.gene81658.t1 AT2G47470 36.667 240 132 5 33 267 28 252 1.52e-44 156
MS.gene81658.t1 AT2G47470 53.398 103 43 3 30 128 143 244 4.78e-27 109
MS.gene81658.t1 AT2G47470 39.370 127 71 3 163 284 28 153 1.23e-19 88.6
MS.gene81658.t1 AT2G47470 36.667 240 132 5 33 267 28 252 3.53e-44 157
MS.gene81658.t1 AT2G47470 53.398 103 43 3 30 128 143 244 4.82e-27 110
MS.gene81658.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.89e-19 88.6
MS.gene81658.t1 AT2G47470 36.667 240 132 5 33 267 28 252 3.64e-44 157
MS.gene81658.t1 AT2G47470 53.398 103 43 3 30 128 143 244 5.37e-27 110
MS.gene81658.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.79e-19 89.0
MS.gene81658.t1 AT2G47470 36.667 240 132 5 33 267 28 252 4.68e-44 157
MS.gene81658.t1 AT2G47470 53.398 103 43 3 30 128 143 244 5.65e-27 111
MS.gene81658.t1 AT2G47470 39.370 127 71 3 163 284 28 153 3.14e-19 89.0
MS.gene81658.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.06e-18 89.0
MS.gene81658.t1 AT3G54960 28.182 220 136 6 163 380 104 303 2.53e-15 78.6
MS.gene81658.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.36e-18 88.6
MS.gene81658.t1 AT3G54960 28.182 220 136 6 163 380 104 303 3.15e-15 78.2
MS.gene81658.t1 AT3G54960 37.363 91 49 2 36 126 445 527 3.41e-11 65.5
MS.gene81658.t1 AT1G21750 41.284 109 57 4 30 132 32 139 1.18e-17 85.5
MS.gene81658.t1 AT1G21750 35.849 106 62 3 163 263 35 139 1.01e-14 76.3
MS.gene81658.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.22e-12 70.1
MS.gene81658.t1 AT1G21750 41.284 109 57 4 30 132 32 139 1.19e-17 85.5
MS.gene81658.t1 AT1G21750 29.518 166 99 5 163 323 35 187 1.05e-14 76.3
MS.gene81658.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.04e-12 70.1
MS.gene81658.t1 AT1G21750 35.577 104 64 2 165 266 381 483 3.23e-11 65.5
MS.gene81658.t1 AT5G60640 36.493 211 111 10 30 226 105 306 1.59e-17 85.5
MS.gene81658.t1 AT5G60640 42.424 99 49 4 161 256 106 199 4.50e-15 77.8
MS.gene81658.t1 AT5G60640 26.733 202 130 5 68 259 351 544 7.63e-12 67.8
MS.gene81658.t1 AT5G60640 36.493 211 111 10 30 226 105 306 1.85e-17 85.1
MS.gene81658.t1 AT5G60640 42.424 99 49 4 161 256 106 199 5.92e-15 77.4
MS.gene81658.t1 AT5G60640 26.633 199 129 5 62 252 346 535 3.61e-11 65.5
MS.gene81658.t1 AT5G60640 36.493 211 111 10 30 226 105 306 2.06e-17 84.7
MS.gene81658.t1 AT5G60640 42.424 99 49 4 161 256 106 199 3.57e-15 77.8
MS.gene81658.t1 AT5G60640 34.737 95 60 1 167 259 386 480 3.86e-11 65.5
MS.gene81658.t1 AT1G77510 40.367 109 58 4 30 132 31 138 8.87e-17 82.8
MS.gene81658.t1 AT1G77510 28.421 190 117 6 152 336 23 198 1.46e-16 82.0
MS.gene81658.t1 AT1G77510 26.820 261 163 11 14 259 227 474 5.23e-11 65.1
MS.gene81658.t1 AT1G35620 38.235 102 58 3 30 128 34 133 8.62e-15 76.6
MS.gene81658.t1 AT1G35620 27.966 236 138 10 155 383 29 239 8.78e-14 73.2
MS.gene81658.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81658.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81658.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81658.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81658.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81658.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81658.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81658.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81658.t1 AT1G43560 37.209 86 54 0 34 119 64 149 1.54e-13 68.9
MS.gene81658.t1 AT1G76760 31.429 105 68 1 34 138 69 169 2.03e-13 68.6
MS.gene81658.t1 AT4G03520 36.082 97 59 2 151 245 74 169 3.70e-12 65.5
MS.gene81658.t1 AT1G50320 30.000 150 89 4 121 263 30 170 4.41e-12 65.1
MS.gene81658.t1 AT3G15360 36.667 90 57 0 30 119 88 177 4.76e-12 65.1
MS.gene81658.t1 AT4G27080 33.663 101 58 2 150 242 133 232 3.16e-11 65.5
MS.gene81658.t1 AT4G27080 33.663 101 58 2 150 242 185 284 3.68e-11 65.5
MS.gene81658.t1 AT1G03680 26.282 156 95 4 110 245 8 163 7.48e-11 61.2
MS.gene81658.t1 AT3G20560 34.000 100 57 2 151 242 134 232 9.45e-11 63.9

Find 108 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTCCCTTTCAAATTAT+TGG 0.104762 5.1:+66845673 None:intergenic
TTCCCAACAATCTTGGTATT+TGG 0.173156 5.1:-66845259 MS.gene81658:CDS
TTCCTTCCTTCCCGACATTT+TGG 0.184244 5.1:-66844979 MS.gene81658:CDS
CTTAATTCCCTTCAGGAATA+TGG 0.210374 5.1:-66846461 MS.gene81658:intron
GAAGGCAGCTACTGTATTAA+AGG 0.276220 5.1:-66847378 MS.gene81658:CDS
CTCTAGTAACTTCGATGAAT+TGG 0.285509 5.1:-66845901 MS.gene81658:CDS
CTTCAGGAATATGGTATTAG+AGG 0.289766 5.1:-66846452 MS.gene81658:intron
CTATATAGCTCTGTCACTTC+TGG 0.297987 5.1:+66845139 None:intergenic
GTTTCCTTATAGTTCATCTT+TGG 0.305542 5.1:+66844095 None:intergenic
TTTGAAAGGGAAGGTTAAAC+TGG 0.309941 5.1:-66845666 MS.gene81658:CDS
GTAAGGCTCTGACTCCTATA+TGG 0.316417 5.1:-66847403 MS.gene81658:CDS
TGCGATTGGTTTAACATCTC+TGG 0.351595 5.1:+66846373 None:intergenic
CTCAAGGTCTGGCTGCTTAC+CGG 0.356762 5.1:+66844475 None:intergenic
TAGAGGATTTCCAACTATAA+AGG 0.370686 5.1:-66846435 MS.gene81658:CDS
AACACCTTTCTTAACGTTCA+AGG 0.373568 5.1:+66844409 None:intergenic
CGCAGAATATGCACTTCAAC+AGG 0.373604 5.1:-66846354 MS.gene81658:intron
TCAACCAAAGATGAACTATA+AGG 0.387123 5.1:-66844099 None:intergenic
AAAGTTGGTGTTGGTGGGTA+TGG 0.390826 5.1:-66844449 MS.gene81658:CDS
GGGTCTTGAACAGCTATGTA+TGG 0.397598 5.1:-66844505 MS.gene81658:intron
CTAGCACCCTCGTAAGGAAT+TGG 0.409040 5.1:+66845220 None:intergenic
TCAAGGATTCCCAACAATCT+TGG 0.416145 5.1:-66845266 MS.gene81658:CDS
TCCATGGTGCGGGCACTGTA+AGG 0.416505 5.1:-66847420 MS.gene81658:CDS
ACCTTGGACTTGAAGTTGTT+AGG 0.419712 5.1:+66848735 None:intergenic
TTGTTGAATTCTTTGCTCCA+TGG 0.424265 5.1:-66847436 MS.gene81658:CDS
TGCTGATGCTCACCAATCTC+TGG 0.427343 5.1:-66847330 MS.gene81658:CDS
AGTTCAAAAGGAGTCCTTAC+AGG 0.430959 5.1:-66844899 MS.gene81658:intron
TTAGGAGTGAGTTGAAGAAC+AGG 0.432451 5.1:+66848753 None:intergenic
CTGGCTCCTTGGTAATCAAC+TGG 0.433932 5.1:+66846392 None:intergenic
AGGAATTGGAGTATCTTTAT+CGG 0.435399 5.1:+66845234 None:intergenic
AGAAACCACCGCTTCTTCTT+CGG 0.438238 5.1:-66845934 MS.gene81658:CDS
TCTGTTTCTCCCCTCCGCCT+TGG 0.439079 5.1:+66844953 None:intergenic
AGAGAATTTGTGAAAGAAGC+TGG 0.439854 5.1:-66844258 MS.gene81658:CDS
GTGTTGTCTATAGGATGTTT+TGG 0.440808 5.1:-66845036 MS.gene81658:intron
TTATCAAAAGCAAAGAACTT+TGG 0.443575 5.1:-66845878 MS.gene81658:CDS
TTTGTCAGTCTCTAATGAGC+AGG 0.447245 5.1:-66845297 MS.gene81658:intron
GGTGCAAACACCTTTATAGT+TGG 0.448420 5.1:+66846425 None:intergenic
CCAACTTTCTGCTCAAGGTC+TGG 0.450805 5.1:+66844464 None:intergenic
AACCGTAGAGAGCGTGAGAA+AGG 0.451953 5.1:+66848784 None:intergenic
TGCTCACCAATCTCTGGCTC+AGG 0.454025 5.1:-66847324 MS.gene81658:intron
GTTTAACATCTCTGGCTCCT+TGG 0.454708 5.1:+66846381 None:intergenic
ATGAGCAGGTTCAATGTTCA+AGG 0.456443 5.1:-66845283 MS.gene81658:CDS
AATTCTTTGCTCCATGGTGC+GGG 0.458259 5.1:-66847430 MS.gene81658:CDS
ATCATTCGCACTAGAGCAGC+TGG 0.462465 5.1:-66845179 MS.gene81658:CDS
TTATAGTTCATCTTTGGTTG+AGG 0.465932 5.1:+66844101 None:intergenic
TGTCAGGTTCTGAATTCAAA+TGG 0.470995 5.1:-66847467 MS.gene81658:intron
CTCCAAATACCAAGATTGTT+GGG 0.472339 5.1:+66845257 None:intergenic
GGAAAACCTGAGCCAGAGAT+TGG 0.473756 5.1:+66847318 None:intergenic
CGGTTAAATGGAAAAGCAAC+AGG 0.474554 5.1:-66845975 MS.gene81658:CDS
GCTCCAAATACCAAGATTGT+TGG 0.479181 5.1:+66845256 None:intergenic
ACGTTCAAGGCTACTAATGC+TGG 0.481617 5.1:+66844422 None:intergenic
ATCCTTTCTCACGCTCTCTA+CGG 0.482498 5.1:-66848786 MS.gene81658:CDS
CAGTTGCAGAGAAGTTCAAA+AGG 0.484219 5.1:-66844911 MS.gene81658:CDS
GGTTCTGTCTTTACAATGGT+GGG 0.490337 5.1:+66844195 None:intergenic
ACTATAAAGGTGTTTGCACC+TGG 0.493971 5.1:-66846422 MS.gene81658:CDS
GCCTTGGAATCCAAAATGTC+GGG 0.495320 5.1:+66844969 None:intergenic
GAACCATGGGATGGAAAAGA+TGG 0.495841 5.1:-66844177 MS.gene81658:CDS
TGGTTCTGTCTTTACAATGG+TGG 0.496152 5.1:+66844194 None:intergenic
AGAGCATCCAATAATTTGAA+AGG 0.498898 5.1:-66845680 MS.gene81658:CDS
CGCCTTGGAATCCAAAATGT+CGG 0.513014 5.1:+66844968 None:intergenic
GAAGCTGGACGTGGAGGCAA+AGG 0.515570 5.1:-66844243 MS.gene81658:CDS
AAGGCAGCTACTGTATTAAA+GGG 0.517489 5.1:-66847377 MS.gene81658:CDS
GAGCATCCAATAATTTGAAA+GGG 0.518744 5.1:-66845679 MS.gene81658:CDS
GTAGCTGCCTTCTCCCATAT+AGG 0.519121 5.1:+66847389 None:intergenic
TGGTGGGAGGAGTGTCACCT+AGG 0.522614 5.1:+66844211 None:intergenic
ATCCAATAATTTGAAAGGGA+AGG 0.529134 5.1:-66845675 MS.gene81658:CDS
TAAGGCTCTGACTCCTATAT+GGG 0.533987 5.1:-66847402 MS.gene81658:CDS
CCAGACCTTGAGCAGAAAGT+TGG 0.535182 5.1:-66844464 MS.gene81658:CDS
GGTGGGAGGAGTGTCACCTA+GGG 0.535529 5.1:+66844212 None:intergenic
GAATTCTTTGCTCCATGGTG+CGG 0.548779 5.1:-66847431 MS.gene81658:CDS
GAGCAGAAAGTTGGTGTTGG+TGG 0.549595 5.1:-66844455 MS.gene81658:CDS
TGAAGTGCATATTCTGCGAT+TGG 0.550530 5.1:+66846359 None:intergenic
TCCTAACAACTTCAAGTCCA+AGG 0.552476 5.1:-66848736 MS.gene81658:intron
ATCCAAAATGTCGGGAAGGA+AGG 0.552840 5.1:+66844977 None:intergenic
CCATGGTTCTGTCTTTACAA+TGG 0.553296 5.1:+66844191 None:intergenic
GTAGCCTTGAACGTTAAGAA+AGG 0.556407 5.1:-66844413 MS.gene81658:CDS
CTCTAGTGCGAATGATTCGA+TGG 0.558140 5.1:+66845186 None:intergenic
GGTCTTGAACAGCTATGTAT+GGG 0.559621 5.1:-66844504 MS.gene81658:intron
AAAAGATGGAGAAATAATTG+AGG 0.562273 5.1:-66844163 MS.gene81658:CDS
GCCTTACAGTGCCCGCACCA+TGG 0.567839 5.1:+66847419 None:intergenic
CAACTGTTAATAACTGCTGA+AGG 0.571823 5.1:+66844928 None:intergenic
GCAGTTCTAGCACCCTCGTA+AGG 0.576634 5.1:+66845214 None:intergenic
CAACACCAACTTTCTGCTCA+AGG 0.577087 5.1:+66844459 None:intergenic
GCTCCTTGGTAATCAACTGG+TGG 0.580906 5.1:+66846395 None:intergenic
AGCAGAAAGTTGGTGTTGGT+GGG 0.581032 5.1:-66844454 MS.gene81658:CDS
AAGCTGGACGTGGAGGCAAA+GGG 0.583780 5.1:-66844242 MS.gene81658:CDS
TTTGTGAAAGAAGCTGGACG+TGG 0.587104 5.1:-66844252 MS.gene81658:CDS
AGCTATGTATGGGCAGCTGC+CGG 0.590014 5.1:-66844494 MS.gene81658:CDS
AGTGAGTTGAAGAACAGGTG+AGG 0.594004 5.1:+66848758 None:intergenic
TCTGACTCCTATATGGGAGA+AGG 0.598675 5.1:-66847396 MS.gene81658:CDS
TCTGTCTTTACAATGGTGGG+AGG 0.605063 5.1:+66844198 None:intergenic
TAGTTCTACCGAAGAAGAAG+CGG 0.621191 5.1:+66845926 None:intergenic
AGTTCAAAAGCACTCTTGAG+AGG 0.621890 5.1:+66844380 None:intergenic
CATTGTAAAGACAGAACCAT+GGG 0.623172 5.1:-66844190 MS.gene81658:CDS
TTCTACCGAAGAAGAAGCGG+TGG 0.624355 5.1:+66845929 None:intergenic
GGCAAAGGGAACTTGCCCCT+AGG 0.627464 5.1:-66844228 MS.gene81658:CDS
CTTGAGCAGAAAGTTGGTGT+TGG 0.628583 5.1:-66844458 MS.gene81658:CDS
TTGAAAGGGAAGGTTAAACT+GGG 0.631529 5.1:-66845665 MS.gene81658:CDS
TGGAATCCAAAATGTCGGGA+AGG 0.635224 5.1:+66844973 None:intergenic
GATACTCCAATTCCTTACGA+GGG 0.636183 5.1:-66845226 MS.gene81658:CDS
TGTTGACTGTGATGCTGACA+AGG 0.636371 5.1:-66845639 MS.gene81658:intron
GTAAAGACAGAACCATGGGA+TGG 0.640244 5.1:-66844186 MS.gene81658:CDS
TATAGCTCTGTCACTTCTGG+AGG 0.640322 5.1:+66845142 None:intergenic
GTGAAAGAAGCTGGACGTGG+AGG 0.650513 5.1:-66844249 MS.gene81658:CDS
TTAAATGGAAAAGCAACAGG+TGG 0.661631 5.1:-66845972 MS.gene81658:CDS
AGATACTCCAATTCCTTACG+AGG 0.665654 5.1:-66845227 MS.gene81658:CDS
GTGGGAGGAGTGTCACCTAG+GGG 0.673404 5.1:+66844213 None:intergenic
CCATTGTAAAGACAGAACCA+TGG 0.708421 5.1:-66844191 MS.gene81658:CDS
AAACCACCAGTTGATTACCA+AGG 0.716041 5.1:-66846398 MS.gene81658:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTATCTTTATACATA+AGG + chr5.1:66845265-66845284 None:intergenic 10.0%
!! GTAATAAATAATTGAAATAT+AGG + chr5.1:66847119-66847138 None:intergenic 10.0%
!! TAATTTATCTTTATACATAA+GGG + chr5.1:66845264-66845283 None:intergenic 10.0%
!! TATAAATAAATTGAAAAGTA+AGG + chr5.1:66847553-66847572 None:intergenic 10.0%
!!! TCATTTTCTAAAATTATTAT+CGG - chr5.1:66844656-66844675 MS.gene81658:intron 10.0%
!! AAAAATAGACTTACATAATT+TGG + chr5.1:66848587-66848606 None:intergenic 15.0%
!! AATATTTGATTGAAACTTTA+AGG + chr5.1:66846649-66846668 None:intergenic 15.0%
!! AATTTATCTTTATACATAAG+GGG + chr5.1:66845263-66845282 None:intergenic 15.0%
!! AATTTGATTAATAACTTGAA+AGG - chr5.1:66846783-66846802 MS.gene81658:intron 15.0%
!! ATAACACATAATATTCATAA+AGG + chr5.1:66845745-66845764 None:intergenic 15.0%
!! ATTTGATTAATAACTTGAAA+GGG - chr5.1:66846784-66846803 MS.gene81658:intron 15.0%
!! TGAAAAATTACTACAAATAA+AGG - chr5.1:66846758-66846777 MS.gene81658:intron 15.0%
!! TTATACTATTGTATTATGAT+TGG - chr5.1:66845324-66845343 MS.gene81658:intron 15.0%
!!! AAAAATTATTCGTATTTTCT+TGG + chr5.1:66845380-66845399 None:intergenic 15.0%
!!! AAAATTATTCGTATTTTCTT+GGG + chr5.1:66845379-66845398 None:intergenic 15.0%
!!! ATAAAATTGTTTGATGTTTT+AGG - chr5.1:66846129-66846148 MS.gene81658:intron 15.0%
!!! TAAAATTGTTTGATGTTTTA+GGG - chr5.1:66846130-66846149 MS.gene81658:intron 15.0%
!! AAATTTAAATACTGAATCTG+AGG + chr5.1:66845664-66845683 None:intergenic 20.0%
!! AAGGAAAAACTTTACATATA+AGG + chr5.1:66846194-66846213 None:intergenic 20.0%
!! ATTGAAAAAAGATTAAACCT+TGG + chr5.1:66844222-66844241 None:intergenic 20.0%
!! CACTAATGTAATTTATTCTT+TGG + chr5.1:66846254-66846273 None:intergenic 20.0%
!! CATGTTTAAATCAAGATAAA+AGG - chr5.1:66848188-66848207 MS.gene81658:intron 20.0%
!! TACTAACTAAACTCAAATTA+AGG - chr5.1:66845132-66845151 MS.gene81658:intron 20.0%
!! TACTTACATGGAAATATAAT+GGG - chr5.1:66848302-66848321 MS.gene81658:intron 20.0%
!! TCAGAATAATATAAACTGAA+AGG + chr5.1:66847609-66847628 None:intergenic 20.0%
!! TTATAGCTTATATGAAAAAC+AGG - chr5.1:66845970-66845989 MS.gene81658:CDS 20.0%
!! TTTAACAAACTGTTATTGTT+CGG - chr5.1:66847408-66847427 MS.gene81658:CDS 20.0%
!!! AAATTATTCGTATTTTCTTG+GGG + chr5.1:66845378-66845397 None:intergenic 20.0%
!!! AATGGTTTTTTGTTTGAATT+TGG - chr5.1:66848412-66848431 MS.gene81658:intron 20.0%
!!! ATGGTTTTTTGTTTGAATTT+GGG - chr5.1:66848413-66848432 MS.gene81658:intron 20.0%
!!! CTAATTTTATGCTAAATAGT+TGG - chr5.1:66848607-66848626 MS.gene81658:intron 20.0%
!!! GTCTTTTTTTTATTTCTCAA+AGG - chr5.1:66847199-66847218 MS.gene81658:intron 20.0%
!!! TCTTTCAAATTCAACTTTTT+CGG - chr5.1:66848132-66848151 MS.gene81658:intron 20.0%
!!! TTGCAGTTATTTTTAAATTG+CGG - chr5.1:66848269-66848288 MS.gene81658:intron 20.0%
! AAAAGATGGAGAAATAATTG+AGG - chr5.1:66848775-66848794 MS.gene81658:CDS 25.0%
! AAAATACCAGCTAAAAAAGT+GGG + chr5.1:66844268-66844287 None:intergenic 25.0%
! AATATCAATGTATTGGGATT+AGG - chr5.1:66846857-66846876 MS.gene81658:intron 25.0%
! AGTGAGAATATCAATGTATT+GGG - chr5.1:66846851-66846870 MS.gene81658:intron 25.0%
! ATATCAATGTATTGGGATTA+GGG - chr5.1:66846858-66846877 MS.gene81658:intron 25.0%
! CAATAGTATAAAAGACTGTT+TGG + chr5.1:66845315-66845334 None:intergenic 25.0%
! GTACTTACATGGAAATATAA+TGG - chr5.1:66848301-66848320 MS.gene81658:intron 25.0%
! TAGCACTAAAATTTAGTTGA+AGG - chr5.1:66844796-66844815 MS.gene81658:intron 25.0%
! TATAGTTTATTTGCATGTAC+AGG - chr5.1:66846920-66846939 MS.gene81658:intron 25.0%
! TCAGTTTATATTATTCTGAC+AGG - chr5.1:66847610-66847629 MS.gene81658:intron 25.0%
! TTATCAAAAGCAAAGAACTT+TGG - chr5.1:66847060-66847079 MS.gene81658:intron 25.0%
! TTTATCCTTGAAAACTATCT+GGG - chr5.1:66844325-66844344 MS.gene81658:intron 25.0%
!! AAGTGATTTTATGTTTGGAT+AGG - chr5.1:66844821-66844840 MS.gene81658:intron 25.0%
!! AGGTAAAGTGATTTTATGTT+TGG - chr5.1:66844816-66844835 MS.gene81658:intron 25.0%
!! ATTAAGTTGTTAATCCCAAT+AGG - chr5.1:66846058-66846077 MS.gene81658:intron 25.0%
!! ATTTGATTGAAACTTTAAGG+AGG + chr5.1:66846646-66846665 None:intergenic 25.0%
!! TAGTGTTACAATTTGGATTT+TGG - chr5.1:66846680-66846699 MS.gene81658:intron 25.0%
!! TTAAGTTGTTAATCCCAATA+GGG - chr5.1:66846059-66846078 MS.gene81658:intron 25.0%
!! TTTAGCTGGTATTTTCAAAT+GGG - chr5.1:66844273-66844292 MS.gene81658:intron 25.0%
!! TTTGATTGAAACTTTAAGGA+GGG + chr5.1:66846645-66846664 None:intergenic 25.0%
!! TTTTATCCTTGAAAACTATC+TGG - chr5.1:66844324-66844343 MS.gene81658:intron 25.0%
!!! ATGGTTGATTTTATGATTCT+GGG - chr5.1:66844419-66844438 MS.gene81658:CDS 25.0%
!!! TATGGTTGATTTTATGATTC+TGG - chr5.1:66844418-66844437 MS.gene81658:CDS 25.0%
!!! TCAAGTAGAATCTATTTTGA+AGG - chr5.1:66844999-66845018 MS.gene81658:CDS 25.0%
!!! TTTTAGCTGGTATTTTCAAA+TGG - chr5.1:66844272-66844291 MS.gene81658:intron 25.0%
!!! TTTTTTATTTCTCAAAGGTG+TGG - chr5.1:66847204-66847223 MS.gene81658:intron 25.0%
AAATAGATTCTACTTGAAGC+TGG + chr5.1:66844996-66845015 None:intergenic 30.0%
AACCTTCCCTTTCAAATTAT+TGG + chr5.1:66847268-66847287 None:intergenic 30.0%
AACTCAAATTAAGGTCTGTT+TGG - chr5.1:66845141-66845160 MS.gene81658:CDS 30.0%
AATATTATGCCATAAAGCAC+CGG - chr5.1:66844572-66844591 MS.gene81658:intron 30.0%
AATTGTAACACTACACATGT+TGG + chr5.1:66846673-66846692 None:intergenic 30.0%
ACATGTGTAGTGTTACAATT+TGG - chr5.1:66846673-66846692 MS.gene81658:intron 30.0%
AGGAATGAAGAAATGAACAA+TGG + chr5.1:66845644-66845663 None:intergenic 30.0%
ATCCAATAATTTGAAAGGGA+AGG - chr5.1:66847263-66847282 MS.gene81658:intron 30.0%
ATGCAGATAGCAAAAAATAG+CGG + chr5.1:66847510-66847529 None:intergenic 30.0%
ATTAACTCATGAGTCATAGA+GGG + chr5.1:66848113-66848132 None:intergenic 30.0%
CAGTGAGAATATCAATGTAT+TGG - chr5.1:66846850-66846869 MS.gene81658:intron 30.0%
CCTGTTATGATTTACATGTT+CGG - chr5.1:66846379-66846398 MS.gene81658:CDS 30.0%
GAAAATACCAGCTAAAAAAG+TGG + chr5.1:66844269-66844288 None:intergenic 30.0%
GAAATTGTAGCTTCTAATTC+TGG + chr5.1:66844895-66844914 None:intergenic 30.0%
GAACCTGACATTATTCAAAA+TGG + chr5.1:66845461-66845480 None:intergenic 30.0%
GAGCATCCAATAATTTGAAA+GGG - chr5.1:66847259-66847278 MS.gene81658:intron 30.0%
GATATACAATATGTAGAGCA+TGG + chr5.1:66846172-66846191 None:intergenic 30.0%
GGCAAAATAAATTCTACTCT+AGG - chr5.1:66845020-66845039 MS.gene81658:CDS 30.0%
TACAATCAAGTAAAGTTTGC+AGG + chr5.1:66847844-66847863 None:intergenic 30.0%
TAGAGGATTTCCAACTATAA+AGG - chr5.1:66846503-66846522 MS.gene81658:intron 30.0%
TCGAATAAACCAATCTAAAC+AGG + chr5.1:66845851-66845870 None:intergenic 30.0%
TCTAATACCATATTCCTGAA+GGG + chr5.1:66846487-66846506 None:intergenic 30.0%
TTATAGTTCATCTTTGGTTG+AGG + chr5.1:66848840-66848859 None:intergenic 30.0%
TTATTTGCATGTACAGGTAA+AGG - chr5.1:66846926-66846945 MS.gene81658:intron 30.0%
! AAAATGATGACGTTAGTTAC+AGG + chr5.1:66846096-66846115 None:intergenic 30.0%
! AGAGCATCCAATAATTTGAA+AGG - chr5.1:66847258-66847277 MS.gene81658:intron 30.0%
! AGATAGATGTCTTCTTTTTG+TGG - chr5.1:66846710-66846729 MS.gene81658:intron 30.0%
! AGGAATTGGAGTATCTTTAT+CGG + chr5.1:66847707-66847726 None:intergenic 30.0%
! ATTTTCTCTTGAAGAACTCA+TGG - chr5.1:66848805-66848824 MS.gene81658:CDS 30.0%
! GTAATGCATCAGGTTTTTAT+GGG - chr5.1:66845433-66845452 MS.gene81658:intron 30.0%
! TAAACATGAGTGTTGTCTAT+AGG - chr5.1:66847893-66847912 MS.gene81658:intron 30.0%
! TATCTAGTTTGTAATGCATC+AGG - chr5.1:66845423-66845442 MS.gene81658:intron 30.0%
! TGTAATGCATCAGGTTTTTA+TGG - chr5.1:66845432-66845451 MS.gene81658:intron 30.0%
! TGTTGATTAGTGTGTGAATA+TGG - chr5.1:66844400-66844419 MS.gene81658:CDS 30.0%
! TTGGTTGCTTTACATAGAAT+GGG + chr5.1:66846235-66846254 None:intergenic 30.0%
! TTTGGTTGCTTTACATAGAA+TGG + chr5.1:66846236-66846255 None:intergenic 30.0%
! TTTTATGATTCTGGGTTTTG+TGG - chr5.1:66844427-66844446 MS.gene81658:CDS 30.0%
! TTTTCTCTTGAAGAACTCAT+GGG - chr5.1:66848806-66848825 MS.gene81658:CDS 30.0%
!! GAAATATAATGGGTTCTCAT+TGG - chr5.1:66848312-66848331 MS.gene81658:intron 30.0%
!!! CAGGAGCTAATTTTTTACAA+TGG + chr5.1:66847230-66847249 None:intergenic 30.0%
!!! TGTTTTTTTACTTGCCTGTA+AGG + chr5.1:66848056-66848075 None:intergenic 30.0%
AACACCTTTCTTAACGTTCA+AGG + chr5.1:66848532-66848551 None:intergenic 35.0%
AAGGCAGCTACTGTATTAAA+GGG - chr5.1:66845561-66845580 MS.gene81658:intron 35.0%
AAGTACCTGTTAGACAGTTA+GGG - chr5.1:66845886-66845905 MS.gene81658:CDS 35.0%
AAGTAGATTCTACTTGAAGC+TGG + chr5.1:66844917-66844936 None:intergenic 35.0%
ACACAACATCTATGAAAGCA+CGG + chr5.1:66844717-66844736 None:intergenic 35.0%
AGAGAATTTGTGAAAGAAGC+TGG - chr5.1:66848680-66848699 MS.gene81658:intron 35.0%
CAACTGTTAATAACTGCTGA+AGG + chr5.1:66848013-66848032 None:intergenic 35.0%
CACTGACACATTTGTTTACA+TGG - chr5.1:66844626-66844645 MS.gene81658:intron 35.0%
CATAAGGGGAAAACAACTTA+TGG + chr5.1:66845249-66845268 None:intergenic 35.0%
CATTGTAAAGACAGAACCAT+GGG - chr5.1:66848748-66848767 MS.gene81658:CDS 35.0%
CATTTCTGTACAATGTACAC+TGG - chr5.1:66845776-66845795 MS.gene81658:intron 35.0%
CCGAACATGTAAATCATAAC+AGG + chr5.1:66846382-66846401 None:intergenic 35.0%
CTACTCTAGGTGATTCATTA+AGG - chr5.1:66845033-66845052 MS.gene81658:intron 35.0%
CTCCAAATACCAAGATTGTT+GGG + chr5.1:66847684-66847703 None:intergenic 35.0%
CTCTAATACCATATTCCTGA+AGG + chr5.1:66846488-66846507 None:intergenic 35.0%
CTCTAGTAACTTCGATGAAT+TGG - chr5.1:66847037-66847056 MS.gene81658:intron 35.0%
CTGGAAATACATACCTTTGA+TGG - chr5.1:66845795-66845814 MS.gene81658:intron 35.0%
CTTAATTCCCTTCAGGAATA+TGG - chr5.1:66846477-66846496 MS.gene81658:intron 35.0%
CTTCAGGAATATGGTATTAG+AGG - chr5.1:66846486-66846505 MS.gene81658:intron 35.0%
CTTTGTTGACGAATGCTTAA+TGG - chr5.1:66848394-66848413 MS.gene81658:intron 35.0%
GAATCAGTTTCGTCAAATAG+CGG - chr5.1:66847368-66847387 MS.gene81658:CDS 35.0%
GATAGGTTCATGTAAAAGTG+AGG - chr5.1:66844838-66844857 MS.gene81658:intron 35.0%
GATTAACTCATGAGTCATAG+AGG + chr5.1:66848114-66848133 None:intergenic 35.0%
GCTTCAAGTAGAATCTACTT+TGG - chr5.1:66844917-66844936 MS.gene81658:CDS 35.0%
GTAAAAAATTAGCTCCTGAG+TGG - chr5.1:66847232-66847251 MS.gene81658:intron 35.0%
GTAGAATTACATGTTCAGTC+AGG + chr5.1:66847141-66847160 None:intergenic 35.0%
GTTTGATGAAGATGCATTGT+TGG + chr5.1:66848362-66848381 None:intergenic 35.0%
TAAGTACCTGTTAGACAGTT+AGG - chr5.1:66845885-66845904 MS.gene81658:CDS 35.0%
TACAATATGTAGAGCATGGT+AGG + chr5.1:66846168-66846187 None:intergenic 35.0%
TCAAGTAGAATCTACTTTGG+AGG - chr5.1:66844920-66844939 MS.gene81658:CDS 35.0%
TTAAATGGAAAAGCAACAGG+TGG - chr5.1:66846966-66846985 MS.gene81658:intron 35.0%
TTACATAGAATGGGAAGACT+AGG + chr5.1:66846226-66846245 None:intergenic 35.0%
TTCCCAACAATCTTGGTATT+TGG - chr5.1:66847679-66847698 MS.gene81658:intron 35.0%
TTGAAAGGGAAGGTTAAACT+GGG - chr5.1:66847273-66847292 MS.gene81658:intron 35.0%
TTGTTGAATTCTTTGCTCCA+TGG - chr5.1:66845502-66845521 MS.gene81658:intron 35.0%
TTTGAAAGGGAAGGTTAAAC+TGG - chr5.1:66847272-66847291 MS.gene81658:intron 35.0%
! AAACACCCAGATAGTTTTCA+AGG + chr5.1:66844333-66844352 None:intergenic 35.0%
! GGTATTGAACCTGTTTAGAT+TGG - chr5.1:66845839-66845858 MS.gene81658:intron 35.0%
! GTCTTTTCTTAATTCCCTTC+AGG - chr5.1:66846470-66846489 MS.gene81658:intron 35.0%
! GTGTTGTCTATAGGATGTTT+TGG - chr5.1:66847902-66847921 MS.gene81658:intron 35.0%
! TATTCGTATTTTCTTGGGGA+GGG + chr5.1:66845374-66845393 None:intergenic 35.0%
! TTATTCGTATTTTCTTGGGG+AGG + chr5.1:66845375-66845394 None:intergenic 35.0%
! TTGTAGAATTTTTCGCACCT+TGG - chr5.1:66847084-66847103 MS.gene81658:intron 35.0%
! TTTGCTATGTTGCTGTATTG+TGG - chr5.1:66844365-66844384 MS.gene81658:intron 35.0%
!! AATATAGGAAGTACTCACCA+AGG + chr5.1:66847104-66847123 None:intergenic 35.0%
!! CTTTTGAAGGAACGGTTAAA+TGG - chr5.1:66846951-66846970 MS.gene81658:intron 35.0%
!! TAAAGGCTCTTTTGAAGGAA+CGG - chr5.1:66846943-66846962 MS.gene81658:intron 35.0%
!! TGTCAGGTTCTGAATTCAAA+TGG - chr5.1:66845471-66845490 MS.gene81658:intron 35.0%
!!! GATGTTTTGGAAGAGAAATG+TGG - chr5.1:66847915-66847934 MS.gene81658:intron 35.0%
!!! GTGCCATTTTGAATAATGTC+AGG - chr5.1:66845455-66845474 MS.gene81658:intron 35.0%
AAAAAAGTGGGATCACGAAC+TGG + chr5.1:66844256-66844275 None:intergenic 40.0%
AAAAAGTGGGATCACGAACT+GGG + chr5.1:66844255-66844274 None:intergenic 40.0%
AAACCACCAGTTGATTACCA+AGG - chr5.1:66846540-66846559 MS.gene81658:intron 40.0%
AAATGTGTCAGTGTCTGTGT+CGG + chr5.1:66844619-66844638 None:intergenic 40.0%
ACAAATGTCATGTAAGCGAC+AGG + chr5.1:66846310-66846329 None:intergenic 40.0%
ACCTTGGACTTGAAGTTGTT+AGG + chr5.1:66844206-66844225 None:intergenic 40.0%
ACTCTTCTTGCAACATCACT+TGG - chr5.1:66846809-66846828 MS.gene81658:intron 40.0%
ACTTTCCCTAACTGTCTAAC+AGG + chr5.1:66845894-66845913 None:intergenic 40.0%
AGATACTCCAATTCCTTACG+AGG - chr5.1:66847711-66847730 MS.gene81658:intron 40.0%
AGTTCAAAAGGAGTCCTTAC+AGG - chr5.1:66848039-66848058 MS.gene81658:intron 40.0%
ATGAGCAGGTTCAATGTTCA+AGG - chr5.1:66847655-66847674 MS.gene81658:intron 40.0%
ATGCACTTCAACAGGTTTGT+TGG - chr5.1:66846592-66846611 MS.gene81658:intron 40.0%
ATGCTGACAAGGTAAGCTTA+TGG - chr5.1:66847310-66847329 MS.gene81658:intron 40.0%
CAGTTGCAGAGAAGTTCAAA+AGG - chr5.1:66848027-66848046 MS.gene81658:intron 40.0%
CCATTGTAAAGACAGAACCA+TGG - chr5.1:66848747-66848766 MS.gene81658:CDS 40.0%
CGGTTAAATGGAAAAGCAAC+AGG - chr5.1:66846963-66846982 MS.gene81658:intron 40.0%
GAAGACTAGGAATGTAACGA+AGG + chr5.1:66846213-66846232 None:intergenic 40.0%
GAAGGCAGCTACTGTATTAA+AGG - chr5.1:66845560-66845579 MS.gene81658:intron 40.0%
GATACTCCAATTCCTTACGA+GGG - chr5.1:66847712-66847731 MS.gene81658:intron 40.0%
GCTCCAAATACCAAGATTGT+TGG + chr5.1:66847685-66847704 None:intergenic 40.0%
GGTCTTGAACAGCTATGTAT+GGG - chr5.1:66848434-66848453 MS.gene81658:intron 40.0%
GGTGCAAACACCTTTATAGT+TGG + chr5.1:66846516-66846535 None:intergenic 40.0%
GGTTCTGTCTTTACAATGGT+GGG + chr5.1:66848746-66848765 None:intergenic 40.0%
GGTTGCAAAGTGTACTTACA+TGG - chr5.1:66848290-66848309 MS.gene81658:intron 40.0%
GTTGTGTATGTTTCGTTCTG+TGG - chr5.1:66844730-66844749 MS.gene81658:intron 40.0%
TCAAGGATTCCCAACAATCT+TGG - chr5.1:66847672-66847691 MS.gene81658:intron 40.0%
TCCTAACAACTTCAAGTCCA+AGG - chr5.1:66844202-66844221 MS.gene81658:CDS 40.0%
TGAAGTGCATATTCTGCGAT+TGG + chr5.1:66846582-66846601 None:intergenic 40.0%
TGCTATAGTGCTTCTATAGC+TGG + chr5.1:66847466-66847485 None:intergenic 40.0%
TTTGTCAGTCTCTAATGAGC+AGG - chr5.1:66847641-66847660 MS.gene81658:intron 40.0%
! ACAGGTAAAGGCTCTTTTGA+AGG - chr5.1:66846938-66846957 MS.gene81658:intron 40.0%
! ATGATGACGTTAGTTACAGG+AGG + chr5.1:66846093-66846112 None:intergenic 40.0%
! CCATGGTTCTGTCTTTACAA+TGG + chr5.1:66848750-66848769 None:intergenic 40.0%
! CTATATAGCTCTGTCACTTC+TGG + chr5.1:66847802-66847821 None:intergenic 40.0%
! CTATCTGGGTGTTTTGTGTT+TGG - chr5.1:66844339-66844358 MS.gene81658:intron 40.0%
! GTAGCCTTGAACGTTAAGAA+AGG - chr5.1:66848525-66848544 MS.gene81658:intron 40.0%
! TAAGGCTCTGACTCCTATAT+GGG - chr5.1:66845536-66845555 MS.gene81658:intron 40.0%
! TAATCAACTGGTGGTTTTCC+AGG + chr5.1:66846537-66846556 None:intergenic 40.0%
! TACATACCTTTGATGGACCA+CGG - chr5.1:66845802-66845821 MS.gene81658:intron 40.0%
! TAGTTCTACCGAAGAAGAAG+CGG + chr5.1:66847015-66847034 None:intergenic 40.0%
! TGGTTCTGTCTTTACAATGG+TGG + chr5.1:66848747-66848766 None:intergenic 40.0%
! TTAGGAGTGAGTTGAAGAAC+AGG + chr5.1:66844188-66844207 None:intergenic 40.0%
!! ACTATAAAGGTGTTTGCACC+TGG - chr5.1:66846516-66846535 MS.gene81658:intron 40.0%
!! AGTTCAAAAGCACTCTTGAG+AGG + chr5.1:66848561-66848580 None:intergenic 40.0%
!! GGTTTGTTGGAATCTCTTCT+TGG - chr5.1:66846605-66846624 MS.gene81658:intron 40.0%
!! TGCGATTGGTTTAACATCTC+TGG + chr5.1:66846568-66846587 None:intergenic 40.0%
AATTCTTTGCTCCATGGTGC+GGG - chr5.1:66845508-66845527 MS.gene81658:intron 45.0%
ACGTTCAAGGCTACTAATGC+TGG + chr5.1:66848519-66848538 None:intergenic 45.0%
AGAAACCACCGCTTCTTCTT+CGG - chr5.1:66847004-66847023 MS.gene81658:intron 45.0%
ATCCAAAATGTCGGGAAGGA+AGG + chr5.1:66847964-66847983 None:intergenic 45.0%
ATCCTTTCTCACGCTCTCTA+CGG - chr5.1:66844152-66844171 MS.gene81658:CDS 45.0%
CAACACCAACTTTCTGCTCA+AGG + chr5.1:66848482-66848501 None:intergenic 45.0%
CGCAGAATATGCACTTCAAC+AGG - chr5.1:66846584-66846603 MS.gene81658:intron 45.0%
CGCCTTGGAATCCAAAATGT+CGG + chr5.1:66847973-66847992 None:intergenic 45.0%
CTCTAGTGCGAATGATTCGA+TGG + chr5.1:66847755-66847774 None:intergenic 45.0%
GAACCATGGGATGGAAAAGA+TGG - chr5.1:66848761-66848780 MS.gene81658:CDS 45.0%
GAATTCTTTGCTCCATGGTG+CGG - chr5.1:66845507-66845526 MS.gene81658:intron 45.0%
GCCTTGGAATCCAAAATGTC+GGG + chr5.1:66847972-66847991 None:intergenic 45.0%
GGGTCTTGAACAGCTATGTA+TGG - chr5.1:66848433-66848452 MS.gene81658:intron 45.0%
GTAAAGACAGAACCATGGGA+TGG - chr5.1:66848752-66848771 MS.gene81658:CDS 45.0%
GTAGAGCATGGTAGGATCTT+GGG + chr5.1:66846160-66846179 None:intergenic 45.0%
GTCAGTGTCCATGTCGTATT+AGG - chr5.1:66844688-66844707 MS.gene81658:intron 45.0%
TCTGACTCCTATATGGGAGA+AGG - chr5.1:66845542-66845561 MS.gene81658:intron 45.0%
TGGAATCCAAAATGTCGGGA+AGG + chr5.1:66847968-66847987 None:intergenic 45.0%
TGTAGAGCATGGTAGGATCT+TGG + chr5.1:66846161-66846180 None:intergenic 45.0%
TTTGTGAAAGAAGCTGGACG+TGG - chr5.1:66848686-66848705 MS.gene81658:intron 45.0%
! AGTGAGTTGAAGAACAGGTG+AGG + chr5.1:66844183-66844202 None:intergenic 45.0%
! ATTTTGGATTCCAAGGCGGA+GGG - chr5.1:66847975-66847994 MS.gene81658:intron 45.0%
! CGACATTTTGGATTCCAAGG+CGG - chr5.1:66847971-66847990 MS.gene81658:intron 45.0%
! GAAGCACTATAGCACTGTAG+TGG - chr5.1:66847472-66847491 MS.gene81658:intron 45.0%
! GTAAGGCTCTGACTCCTATA+TGG - chr5.1:66845535-66845554 MS.gene81658:intron 45.0%
! GTTTAACATCTCTGGCTCCT+TGG + chr5.1:66846560-66846579 None:intergenic 45.0%
! TATAGCTCTGTCACTTCTGG+AGG + chr5.1:66847799-66847818 None:intergenic 45.0%
! TCCCGACATTTTGGATTCCA+AGG - chr5.1:66847968-66847987 MS.gene81658:intron 45.0%
! TCTCCATCTTTTCCATCCCA+TGG + chr5.1:66848767-66848786 None:intergenic 45.0%
! TCTGTCTTTACAATGGTGGG+AGG + chr5.1:66848743-66848762 None:intergenic 45.0%
! TGTTGACTGTGATGCTGACA+AGG - chr5.1:66847299-66847318 MS.gene81658:intron 45.0%
! TTCCTTCCTTCCCGACATTT+TGG - chr5.1:66847959-66847978 MS.gene81658:intron 45.0%
! TTGGATGCTCTTTTCCACTC+AGG + chr5.1:66847249-66847268 None:intergenic 45.0%
!! AAAGTTGGTGTTGGTGGGTA+TGG - chr5.1:66848489-66848508 MS.gene81658:intron 45.0%
!! AGCAGAAAGTTGGTGTTGGT+GGG - chr5.1:66848484-66848503 MS.gene81658:intron 45.0%
!! CTTGAGCAGAAAGTTGGTGT+TGG - chr5.1:66848480-66848499 MS.gene81658:intron 45.0%
!!! CGTGATCCCACTTTTTTAGC+TGG - chr5.1:66844259-66844278 MS.gene81658:CDS 45.0%
ACCACGGACGATGCAAAACA+TGG - chr5.1:66845818-66845837 MS.gene81658:intron 50.0%
ACGACATGGACACTGACATG+TGG + chr5.1:66844685-66844704 None:intergenic 50.0%
AGGAGGACACTTGACCCTAT+TGG + chr5.1:66846076-66846095 None:intergenic 50.0%
ATCATTCGCACTAGAGCAGC+TGG - chr5.1:66847759-66847778 MS.gene81658:intron 50.0%
CACGGACACCTAATACGACA+TGG + chr5.1:66844699-66844718 None:intergenic 50.0%
CCAACTTTCTGCTCAAGGTC+TGG + chr5.1:66848477-66848496 None:intergenic 50.0%
CCAGACCTTGAGCAGAAAGT+TGG - chr5.1:66848474-66848493 MS.gene81658:intron 50.0%
CTAGCACCCTCGTAAGGAAT+TGG + chr5.1:66847721-66847740 None:intergenic 50.0%
GCAGGAGAACAAACACTCAC+TGG + chr5.1:66847826-66847845 None:intergenic 50.0%
GGAAAACCTGAGCCAGAGAT+TGG + chr5.1:66845623-66845642 None:intergenic 50.0%
GGAGGACACTTGACCCTATT+GGG + chr5.1:66846075-66846094 None:intergenic 50.0%
GTAGCTGCCTTCTCCCATAT+AGG + chr5.1:66845552-66845571 None:intergenic 50.0%
TGCTGATGCTCACCAATCTC+TGG - chr5.1:66845608-66845627 MS.gene81658:intron 50.0%
TTCTACCGAAGAAGAAGCGG+TGG + chr5.1:66847012-66847031 None:intergenic 50.0%
! AACCGTAGAGAGCGTGAGAA+AGG + chr5.1:66844157-66844176 None:intergenic 50.0%
! ACCATGTTTTGCATCGTCCG+TGG + chr5.1:66845822-66845841 None:intergenic 50.0%
! CATTTTGGATTCCAAGGCGG+AGG - chr5.1:66847974-66847993 MS.gene81658:intron 50.0%
! CTGGCTCCTTGGTAATCAAC+TGG + chr5.1:66846549-66846568 None:intergenic 50.0%
! GCTCCTTGGTAATCAACTGG+TGG + chr5.1:66846546-66846565 None:intergenic 50.0%
! TTTTGGATTCCAAGGCGGAG+GGG - chr5.1:66847976-66847995 MS.gene81658:intron 50.0%
!! CATAAAGCACCGGCACTCTT+CGG - chr5.1:66844582-66844601 MS.gene81658:intron 50.0%
!! GAGCAGAAAGTTGGTGTTGG+TGG - chr5.1:66848483-66848502 MS.gene81658:intron 50.0%
AAGCTGGACGTGGAGGCAAA+GGG - chr5.1:66848696-66848715 MS.gene81658:intron 55.0%
AGCTATGTATGGGCAGCTGC+CGG - chr5.1:66848444-66848463 MS.gene81658:intron 55.0%
CATCGTCCGTGGTCCATCAA+AGG + chr5.1:66845811-66845830 None:intergenic 55.0%
CTCAAGGTCTGGCTGCTTAC+CGG + chr5.1:66848466-66848485 None:intergenic 55.0%
GTGAAAGAAGCTGGACGTGG+AGG - chr5.1:66848689-66848708 MS.gene81658:intron 55.0%
! ACGCCTAATCCGAAGAGTGC+CGG + chr5.1:66844594-66844613 None:intergenic 55.0%
! GCAGTTCTAGCACCCTCGTA+AGG + chr5.1:66847727-66847746 None:intergenic 55.0%
! TGCTCACCAATCTCTGGCTC+AGG - chr5.1:66845614-66845633 MS.gene81658:intron 55.0%
!! CGAAGAGTGCCGGTGCTTTA+TGG + chr5.1:66844584-66844603 None:intergenic 55.0%
GAAGCTGGACGTGGAGGCAA+AGG - chr5.1:66848695-66848714 MS.gene81658:intron 60.0%
GGCAAAGGGAACTTGCCCCT+AGG - chr5.1:66848710-66848729 MS.gene81658:intron 60.0%
! GCACCGGCACTCTTCGGATT+AGG - chr5.1:66844588-66844607 MS.gene81658:intron 60.0%
! TCCATGGTGCGGGCACTGTA+AGG - chr5.1:66845518-66845537 MS.gene81658:intron 60.0%
! TCTGTTTCTCCCCTCCGCCT+TGG + chr5.1:66847988-66848007 None:intergenic 60.0%
!! GGTGGGAGGAGTGTCACCTA+GGG + chr5.1:66848729-66848748 None:intergenic 60.0%
!! GTGGGAGGAGTGTCACCTAG+GGG + chr5.1:66848728-66848747 None:intergenic 60.0%
!! TGGTGGGAGGAGTGTCACCT+AGG + chr5.1:66848730-66848749 None:intergenic 60.0%
GCCTTACAGTGCCCGCACCA+TGG + chr5.1:66845522-66845541 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 66844101 66848859 66844101 ID=MS.gene81658
chr5.1 mRNA 66844101 66848859 66844101 ID=MS.gene81658.t1;Parent=MS.gene81658
chr5.1 exon 66848737 66848859 66848737 ID=MS.gene81658.t1.exon1;Parent=MS.gene81658.t1
chr5.1 CDS 66848737 66848859 66848737 ID=cds.MS.gene81658.t1;Parent=MS.gene81658.t1
chr5.1 exon 66847325 66847483 66847325 ID=MS.gene81658.t1.exon2;Parent=MS.gene81658.t1
chr5.1 CDS 66847325 66847483 66847325 ID=cds.MS.gene81658.t1;Parent=MS.gene81658.t1
chr5.1 exon 66846355 66846468 66846355 ID=MS.gene81658.t1.exon3;Parent=MS.gene81658.t1
chr5.1 CDS 66846355 66846468 66846355 ID=cds.MS.gene81658.t1;Parent=MS.gene81658.t1
chr5.1 exon 66845855 66846018 66845855 ID=MS.gene81658.t1.exon4;Parent=MS.gene81658.t1
chr5.1 CDS 66845855 66846018 66845855 ID=cds.MS.gene81658.t1;Parent=MS.gene81658.t1
chr5.1 exon 66845640 66845739 66845640 ID=MS.gene81658.t1.exon5;Parent=MS.gene81658.t1
chr5.1 CDS 66845640 66845739 66845640 ID=cds.MS.gene81658.t1;Parent=MS.gene81658.t1
chr5.1 exon 66845135 66845311 66845135 ID=MS.gene81658.t1.exon6;Parent=MS.gene81658.t1
chr5.1 CDS 66845135 66845311 66845135 ID=cds.MS.gene81658.t1;Parent=MS.gene81658.t1
chr5.1 exon 66844900 66845045 66844900 ID=MS.gene81658.t1.exon7;Parent=MS.gene81658.t1
chr5.1 CDS 66844900 66845045 66844900 ID=cds.MS.gene81658.t1;Parent=MS.gene81658.t1
chr5.1 exon 66844368 66844514 66844368 ID=MS.gene81658.t1.exon8;Parent=MS.gene81658.t1
chr5.1 CDS 66844368 66844514 66844368 ID=cds.MS.gene81658.t1;Parent=MS.gene81658.t1
chr5.1 exon 66844101 66844278 66844101 ID=MS.gene81658.t1.exon9;Parent=MS.gene81658.t1
chr5.1 CDS 66844101 66844278 66844101 ID=cds.MS.gene81658.t1;Parent=MS.gene81658.t1
Gene Sequence

>MS.gene81658

ATGGCGAAACTCTCATTCATTGCTGTAACTATCTTTCTCTTCAACAATCTCATCCTTTCTCACGCTCTCTACGGTTCTTCCTCACCTGTTCTTCAACTCACTCCTAACAACTTCAAGTCCAAGGTTTAATCTTTTTTCAATTTTTCATTGACCCAGTTCGTGATCCCACTTTTTTAGCTGGTATTTTCAAATGGGTATTGCGTAGAATTGTTAAATTTTGTAGTTTTATCCTTGAAAACTATCTGGGTGTTTTGTGTTTGGAATTTTGCTATGTTGCTGTATTGTGGTGTTTCTGTTTTTGTTGATTAGTGTGTGAATATGGTTGATTTTATGATTCTGGGTTTTGTGGAATTACAATTTTTTGATTTGTGTGATATATATAATGTAACAAATCTGTTGATTCATACTATTATGCAAGTATGTGTTAATGTTGTGTTTTATCATCTGAAAAGATCTTTTAATTCATGTGTTAATATTATGCCATAAAGCACCGGCACTCTTCGGATTAGGCGTGTCCGACACAGACACTGACACATTTGTTTACATGGAATTATGTCATTTTCTAAAATTATTATCGGTTTCCACATGTCAGTGTCCATGTCGTATTAGGTGTCCGTGCTTTCATAGATGTTGTGTATGTTTCGTTCTGTGGTGAGAAAAATTGATTTTGAAAGAATTGATTATGTGAAATTGATTAGCACTAAAATTTAGTTGAAGGTAAAGTGATTTTATGTTTGGATAGGTTCATGTAAAAGTGAGGTGAACAATAAATTTGAGTGTAAAAAACAATACCAGAATTAGAAGCTACAATTTCCAGCTTCAAGTAGAATCTACTTTGGAGGCAAAATCAATTATACTCTAAAAAAAATTCTAGAATTAGAAGCTACAATTTCCAGCTTCAAGTAGAATCTATTTTGAAGGCAAAATAAATTCTACTCTAGGTGATTCATTAAGGACGTTTCGATTTAATCATAACTACTTCTAAAGTCACACATATGATTGCATGTGATTCATTGCTGTAAATATTTTTATACTAACTAAACTCAAATTAAGGTCTGTTTGGATTGTTTTATATGAACTTATCTATTTACATTAGCACTTATAAGACTGTTTGAGAGAACTTACGAAAATTGCTCATGACGTGTCCATAAGTTGTTTTCCCCTTATGTATAAAGATAAATTATACATATGCACTTAATTAAGTTGTTTATCCAAACAGTCTTTTATACTATTGTATTATGATTGGACTTTGATATGATGAAATACGAGTCCCTCCCCAAGAAAATACGAATAATTTTTATGAGTTAGCTTTTTCTTTGCTTTATCTAGTTTGTAATGCATCAGGTTTTTATGGGTGCCATTTTGAATAATGTCAGGTTCTGAATTCAAATGGAGTTGTTCTTGTTGAATTCTTTGCTCCATGGTGCGGGCACTGTAAGGCTCTGACTCCTATATGGGAGAAGGCAGCTACTGTATTAAAGGGTGTAGTTACTGTTGCAGCACTTGATGCTGATGCTCACCAATCTCTGGCTCAGGTTTTCCATTGTTCATTTCTTCATTCCTCAGATTCAGTATTTAAATTTAAATGACATATATTAAAGTAAGACTATGCTGCATGTGTTGTTTTCATCTTACATTTAACCTTTATGAATATTATGTGTTATTATATGTTTCACATTTCTGTACAATGTACACTGGAAATACATACCTTTGATGGACCACGGACGATGCAAAACATGGTATTGAACCTGTTTAGATTGGTTTATTCGAGTTAACTATTGACATAAGTACCTGTTAGACAGTTAGGGAAAGTTTATGAAAACTGTGTATGACATGTTCATAAGCTCTATGATAACTTATGAAAACAGCTTATAGCTTATATGAAAAACAGGTTGAATTTGTTTTATCTTTTTTATAGAAATAGTTTCTACATAAACACTTGTATGATAAGTGCTTAATTAAGTTGTTAATCCCAATAGGGTCAAGTGTCCTCCTGTAACTAACGTCATCATTTTGATCATTTTAGATATAAAATTGTTTGATGTTTTAGGGCATGCCCAAGATCCTACCATGCTCTACATATTGTATATCCTTATATGTAAAGTTTTTCCTTCGTTACATTCCTAGTCTTCCCATTCTATGTAAAGCAACCAAAGAATAAATTACATTAGTGAATAAGAATATGTTTGTTGAGATTATTTATTTTCCTGTCGCTTACATGACATTTGTTATTGTTTGCATGATGAAATATTTATTCATCTAATGCTTGTATCTTTCTCCTGTTATGATTTACATGTTCGGCTATTTTCTTCATTTATTTTATTATAACTGTAAATTGCAAAATTTGAAAAAATCATTTAGATTTTTGTGTCTTTTCTTAATTCCCTTCAGGAATATGGTATTAGAGGATTTCCAACTATAAAGGTGTTTGCACCTGGAAAACCACCAGTTGATTACCAAGGAGCCAGAGATGTTAAACCAATCGCAGAATATGCACTTCAACAGGTTTGTTGGAATCTCTTCTTGGATGTTTTAACATTTCCCTCCTTAAAGTTTCAATCAAATATTTCCAACATGTGTAGTGTTACAATTTGGATTTTGGATAGAGTAGATAGATGTCTTCTTTTTGTGGAAAACAACAATTTCTTGTACTTTTATGAAAAATTACTACAAATAAAGGAGAATTTGATTAATAACTTGAAAGGGAAACTCTTCTTGCAACATCACTTGGTAGTGTACAAAATTTCAGCAGTGAGAATATCAATGTATTGGGATTAGGGTTGACTGTTCAGTGACTACTGCTTGTAATATTGTGTGATTATAGTTTATTTGCATGTACAGGTAAAGGCTCTTTTGAAGGAACGGTTAAATGGAAAAGCAACAGGTGGATCAAATGAAAAAAAAGAAACCACCGCTTCTTCTTCGGTAGAACTAAACTCTAGTAACTTCGATGAATTGGTTATCAAAAGCAAAGAACTTTGGATTGTAGAATTTTTCGCACCTTGGTGAGTACTTCCTATATTTCAATTATTTATTACCTGACTGAACATGTAATTCTACTTTCAGATTTGCAGTTTCTAAATCTAATAACAACTTTTGTCTTTTTTTTATTTCTCAAAGGTGTGGCCATTGTAAAAAATTAGCTCCTGAGTGGAAAAGAGCATCCAATAATTTGAAAGGGAAGGTTAAACTGGGTCATGTTGACTGTGATGCTGACAAGGTAAGCTTATGGAGTATATCTAATCTCATAGTAGTTAATAAAAATTAGAATCAGTTTCGTCAAATAGCGGCTATAGCGTAGCAGAATTTTAACAAACTGTTATTGTTCGGTGATATACAATTTAGCAAGTGTTGTCAAATAGCCAGCTATAGAAGCACTATAGCACTGTAGTGGAACTTTAACAAACCGCTATTTTTTGCTATCTGCATGATGATCAAGATGATCTCAACCTTACTTTTCAATTTATTTATATTATTAGTGTTCAATATTAAGCTTTTTATTCTGCCTTTCAGTTTATATTATTCTGACAGGATAATTTTTTTGTCAGTCTCTAATGAGCAGGTTCAATGTTCAAGGATTCCCAACAATCTTGGTATTTGGAGCCGATAAAGATACTCCAATTCCTTACGAGGGTGCTAGAACTGCATCAGCCATCGAATCATTCGCACTAGAGCAGCTGGAAACAAATGTTGCTCCTCCAGAAGTGACAGAGCTATATAGTCCAGTGAGTGTTTGTTCTCCTGCAAACTTTACTTGATTGTACACTGATTTGAAAGAAAGAATATAAGATATAAACATGAGTGTTGTCTATAGGATGTTTTGGAAGAGAAATGTGGTTCTGCTGCTATCTGTTTTGTTTCCTTCCTTCCCGACATTTTGGATTCCAAGGCGGAGGGGAGAAACAGATACCTTCAGCAGTTATTAACAGTTGCAGAGAAGTTCAAAAGGAGTCCTTACAGGCAAGTAAAAAAACATTTTGCTTACATTTCATAGTTCATACTTTCACATCCCTCTATGACTCATGAGTTAATCTTTCAAATTCAACTTTTTCGGTTTATACTATTGATTTTGTAAATGCTTTACAGACATGTTTAAATCAAGATAAAAGGCAACATGCATGTCAGTGTAAACTAGTTTTACACTGACGTTCAATGTGAATCGTGCATGTTGCAGTTATTTTTAAATTGCGGTTGCAAAGTGTACTTACATGGAAATATAATGGGTTCTCATTGGATATCAGTGTAAAACTATTTTGCACCAACAATGCATCTTCATCAAACTCTTAAATCAGTCTTTGTTGACGAATGCTTAATGGTTTTTTGTTTGAATTTGGGTCTTGAACAGCTATGTATGGGCAGCTGCCGGTAAGCAGCCAGACCTTGAGCAGAAAGTTGGTGTTGGTGGGTATGGTTATCCAGCATTAGTAGCCTTGAACGTTAAGAAAGGTGTTTATGCTCCTCTCAAGAGTGCTTTTGAACTTGACCAAATTATGTAAGTCTATTTTTCTAATTTTATGCTAAATAGTTGGCGCTTTACTGAAGCAAACAAGTACTTGAACTTTATTGATTTGTTTTCTTCAGAGAATTTGTGAAAGAAGCTGGACGTGGAGGCAAAGGGAACTTGCCCCTAGGTGACACTCCTCCCACCATTGTAAAGACAGAACCATGGGATGGAAAAGATGGAGAAATAATTGAGGAAGATGAATTTTCTCTTGAAGAACTCATGGGAGATGATGCCTCAACCAAAGATGAACTATAA

Protein sequence

>MS.gene81658.t1

MAKLSFIAVTIFLFNNLILSHALYGSSSPVLQLTPNNFKSKVLNSNGVVLVEFFAPWCGHCKALTPIWEKAATVLKGVVTVAALDADAHQSLAQEYGIRGFPTIKVFAPGKPPVDYQGARDVKPIAEYALQQVKALLKERLNGKATGGSNEKKETTASSSVELNSSNFDELVIKSKELWIVEFFAPWCGHCKKLAPEWKRASNNLKGKVKLGHVDCDADKSLMSRFNVQGFPTILVFGADKDTPIPYEGARTASAIESFALEQLETNVAPPEVTELYSPDVLEEKCGSAAICFVSFLPDILDSKAEGRNRYLQQLLTVAEKFKRSPYSYVWAAAGKQPDLEQKVGVGGYGYPALVALNVKKGVYAPLKSAFELDQIIEFVKEAGRGGKGNLPLGDTPPTIVKTEPWDGKDGEIIEEDEFSLEELMGDDASTKDEL