AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29768


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29768.t1 MTR_5g084930 99.080 435 4 0 1 435 1 435 0.0 884
MS.gene29768.t1 MTR_2g021750 84.962 133 20 0 1 133 1 133 5.17e-73 233
MS.gene29768.t1 MTR_2g021750 44.037 109 60 1 156 264 26 133 2.06e-23 100
MS.gene29768.t1 MTR_7g112040 33.824 272 154 8 1 267 3 253 3.36e-40 147
MS.gene29768.t1 MTR_7g112040 42.308 130 67 4 157 280 23 150 2.80e-21 95.1
MS.gene29768.t1 MTR_1g087520 35.000 240 136 5 33 267 34 258 1.11e-39 146
MS.gene29768.t1 MTR_1g087520 40.541 148 70 4 28 172 147 279 1.83e-24 104
MS.gene29768.t1 MTR_1g087520 40.625 128 68 4 163 284 34 159 2.81e-19 89.4
MS.gene29768.t1 MTR_1g096790 40.351 114 59 4 30 136 28 139 7.13e-17 82.8
MS.gene29768.t1 MTR_1g096790 29.075 227 129 7 163 382 31 232 3.98e-15 77.4
MS.gene29768.t1 MTR_3g088220 34.884 172 93 7 163 329 38 195 1.47e-16 82.0
MS.gene29768.t1 MTR_3g088220 41.284 109 57 4 30 132 35 142 1.58e-16 82.0
MS.gene29768.t1 MTR_3g088220 33.333 105 68 1 26 128 375 479 1.02e-11 67.0
MS.gene29768.t1 MTR_2g094180 41.600 125 65 4 135 256 55 174 1.69e-14 75.9
MS.gene29768.t1 MTR_2g094180 51.220 82 38 2 30 110 80 160 3.76e-13 71.6
MS.gene29768.t1 MTR_2g094180 27.184 206 132 6 64 259 322 519 1.42e-11 66.6
MS.gene29768.t1 MTR_2g094180 32.609 138 87 3 36 169 424 559 1.74e-11 66.6
MS.gene29768.t1 MTR_8g059015 41.463 82 48 0 30 111 73 154 2.97e-14 71.2
MS.gene29768.t1 MTR_8g059015 25.654 191 122 6 72 259 2 175 8.31e-13 67.0
MS.gene29768.t1 MTR_2g079420 26.846 149 99 2 107 245 9 157 8.55e-14 69.7
MS.gene29768.t1 MTR_2g079420 34.653 101 66 0 11 111 51 151 3.39e-13 67.8
MS.gene29768.t1 MTR_2g093680 28.814 118 81 2 17 132 29 145 1.20e-13 68.9
MS.gene29768.t1 MTR_2g093680 28.333 120 83 2 156 273 37 155 5.08e-12 64.3
MS.gene29768.t1 MTR_1g114290 34.483 116 72 2 24 138 64 176 1.52e-13 69.3
MS.gene29768.t1 MTR_1g114290 30.631 111 73 1 153 263 63 169 7.57e-13 67.0
MS.gene29768.t1 MTR_1g098660 32.558 86 58 0 34 119 66 151 6.61e-13 67.0
MS.gene29768.t1 MTR_1g098660 29.808 104 66 3 166 268 68 165 2.62e-11 62.4
MS.gene29768.t1 MTR_2g079340 41.975 81 47 0 31 111 37 117 9.14e-13 66.2
MS.gene29768.t1 MTR_2g079340 36.620 71 45 0 167 237 43 113 3.28e-11 62.0
MS.gene29768.t1 MTR_4g059450 48.421 95 40 5 30 120 102 191 1.54e-12 69.7
MS.gene29768.t1 MTR_2g079400 37.234 94 59 0 18 111 22 115 7.60e-12 63.2
MS.gene29768.t1 MTR_3g089065 35.632 87 56 0 33 119 73 159 9.32e-12 63.9
MS.gene29768.t1 MTR_4g080800 32.967 91 52 2 160 242 143 232 2.20e-11 65.9
MS.gene29768.t1 MTR_4g085880 36.905 84 50 1 31 111 63 146 5.86e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29768.t1 AT1G04980 72.748 444 111 4 1 435 5 447 0.0 680
MS.gene29768.t1 AT2G32920 73.709 426 107 3 14 435 16 440 0.0 656
MS.gene29768.t1 AT2G47470 36.250 240 133 5 33 267 28 252 4.17e-44 155
MS.gene29768.t1 AT2G47470 54.369 103 42 3 30 128 143 244 1.38e-27 110
MS.gene29768.t1 AT2G47470 39.370 127 71 3 163 284 28 153 1.13e-19 89.0
MS.gene29768.t1 AT2G47470 36.250 240 133 5 33 267 28 252 9.12e-44 156
MS.gene29768.t1 AT2G47470 54.369 103 42 3 30 128 143 244 1.34e-27 112
MS.gene29768.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.73e-19 89.0
MS.gene29768.t1 AT2G47470 36.250 240 133 5 33 267 28 252 9.89e-44 156
MS.gene29768.t1 AT2G47470 54.369 103 42 3 30 128 143 244 1.57e-27 112
MS.gene29768.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.59e-19 89.0
MS.gene29768.t1 AT2G47470 36.250 240 133 5 33 267 28 252 1.44e-43 156
MS.gene29768.t1 AT2G47470 54.369 103 42 3 30 128 143 244 1.68e-27 112
MS.gene29768.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.96e-19 89.4
MS.gene29768.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.06e-18 89.0
MS.gene29768.t1 AT3G54960 28.182 220 136 6 163 380 104 303 2.71e-15 78.2
MS.gene29768.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.48e-18 88.6
MS.gene29768.t1 AT3G54960 27.854 219 138 6 163 380 104 303 3.64e-15 78.2
MS.gene29768.t1 AT3G54960 37.363 91 49 2 36 126 445 527 3.35e-11 65.9
MS.gene29768.t1 AT5G60640 36.493 211 111 10 30 226 105 306 2.29e-17 84.7
MS.gene29768.t1 AT5G60640 42.424 99 49 4 161 256 106 199 4.35e-15 77.8
MS.gene29768.t1 AT5G60640 26.733 202 130 5 68 259 351 544 5.27e-12 68.2
MS.gene29768.t1 AT5G60640 36.493 211 111 10 30 226 105 306 2.92e-17 84.3
MS.gene29768.t1 AT5G60640 42.424 99 49 4 161 256 106 199 5.82e-15 77.4
MS.gene29768.t1 AT5G60640 26.633 199 129 5 62 252 346 535 2.63e-11 65.9
MS.gene29768.t1 AT5G60640 36.493 211 111 10 30 226 105 306 3.29e-17 84.3
MS.gene29768.t1 AT5G60640 42.424 99 49 4 161 256 106 199 3.83e-15 77.8
MS.gene29768.t1 AT5G60640 34.737 95 60 1 167 259 386 480 3.86e-11 65.5
MS.gene29768.t1 AT1G21750 40.367 109 58 4 30 132 32 139 4.01e-17 84.0
MS.gene29768.t1 AT1G21750 35.849 106 62 3 163 263 35 139 9.65e-15 76.6
MS.gene29768.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.10e-12 70.1
MS.gene29768.t1 AT1G21750 40.367 109 58 4 30 132 32 139 4.11e-17 84.0
MS.gene29768.t1 AT1G21750 29.518 166 99 5 163 323 35 187 1.04e-14 76.6
MS.gene29768.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.01e-12 70.1
MS.gene29768.t1 AT1G21750 35.577 104 64 2 165 266 381 483 2.99e-11 65.9
MS.gene29768.t1 AT1G77510 28.421 190 117 6 152 336 23 198 1.43e-16 82.0
MS.gene29768.t1 AT1G77510 39.450 109 59 4 30 132 31 138 3.13e-16 81.3
MS.gene29768.t1 AT1G77510 27.165 254 157 11 14 252 227 467 5.52e-11 64.7
MS.gene29768.t1 AT1G07960 30.000 120 81 2 28 144 25 144 1.63e-14 70.9
MS.gene29768.t1 AT1G07960 25.439 114 82 2 154 265 21 133 9.36e-14 68.9
MS.gene29768.t1 AT1G07960 30.000 120 81 2 28 144 25 144 1.63e-14 70.9
MS.gene29768.t1 AT1G07960 25.439 114 82 2 154 265 21 133 9.36e-14 68.9
MS.gene29768.t1 AT1G07960 30.000 120 81 2 28 144 25 144 1.63e-14 70.9
MS.gene29768.t1 AT1G07960 25.439 114 82 2 154 265 21 133 9.36e-14 68.9
MS.gene29768.t1 AT1G07960 30.000 120 81 2 28 144 25 144 1.63e-14 70.9
MS.gene29768.t1 AT1G07960 25.439 114 82 2 154 265 21 133 9.36e-14 68.9
MS.gene29768.t1 AT1G35620 40.426 94 51 3 30 120 34 125 2.16e-14 75.1
MS.gene29768.t1 AT1G35620 27.966 236 138 10 155 383 29 239 8.62e-14 73.6
MS.gene29768.t1 AT1G43560 37.209 86 54 0 34 119 64 149 1.45e-13 68.9
MS.gene29768.t1 AT1G76760 31.429 105 68 1 34 138 69 169 1.91e-13 68.6
MS.gene29768.t1 AT4G03520 36.082 97 59 2 151 245 74 169 3.50e-12 65.5
MS.gene29768.t1 AT1G50320 30.000 150 89 4 121 263 30 170 3.75e-12 65.1
MS.gene29768.t1 AT3G15360 36.667 90 57 0 30 119 88 177 4.41e-12 65.1
MS.gene29768.t1 AT4G27080 32.000 125 67 4 126 242 118 232 2.30e-11 65.9
MS.gene29768.t1 AT4G27080 32.000 125 67 4 126 242 170 284 2.68e-11 65.9
MS.gene29768.t1 AT1G03680 26.923 156 94 4 110 245 8 163 2.93e-11 62.4
MS.gene29768.t1 AT3G20560 34.000 100 57 2 151 242 134 232 9.62e-11 63.9

Find 108 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCAACAATCTTGGTATT+TGG 0.173156 5.3:-68664619 MS.gene29768:CDS
TTCCTTCCTTCCCGACATTT+TGG 0.184244 5.3:-68664339 MS.gene29768:CDS
CTTAATTCCCTTCAGGAATA+TGG 0.210374 5.3:-68665824 MS.gene29768:intron
GAAGGCAGCTACTGTATTAA+AGG 0.276220 5.3:-68666773 MS.gene29768:CDS
CTCTAGTAACTTCGATGAAT+TGG 0.285509 5.3:-68665262 MS.gene29768:CDS
CTTCAGGAATATGGTATTAG+AGG 0.289766 5.3:-68665815 MS.gene29768:intron
CTATATAGCTCTGTCACTTC+TGG 0.297987 5.3:+68664499 None:intergenic
CGCAGAATTTGCACTTCAAC+AGG 0.299216 5.3:-68665717 MS.gene29768:intron
GTTTCCTTATAGTTCATCTT+TGG 0.305542 5.3:+68663454 None:intergenic
TTTGAAAGGGAAGGTTAAAC+TGG 0.309941 5.3:-68665029 MS.gene29768:CDS
GTAAGGCTCTGACTCCTATA+TGG 0.316417 5.3:-68666798 MS.gene29768:CDS
TGCGATTGGTTTAACATCTC+TGG 0.351595 5.3:+68665736 None:intergenic
CTCAAGGTCTGGCTGCTTAC+CGG 0.356762 5.3:+68663834 None:intergenic
TAGAGGATTTCCAACTATAA+AGG 0.370686 5.3:-68665798 MS.gene29768:CDS
AACACCTTTCTTAACGTTCA+AGG 0.373568 5.3:+68663768 None:intergenic
TCTGTTTCTCCCCTCCGCTT+TGG 0.375402 5.3:+68664313 None:intergenic
TCAACCAAAGATGAACTATA+AGG 0.387123 5.3:-68663458 None:intergenic
AAAGTTGGTGTTGGTGGGTA+TGG 0.390826 5.3:-68663808 MS.gene29768:CDS
GGGTCTTGAACAGCTATGTA+TGG 0.397598 5.3:-68663864 MS.gene29768:intron
CTAGCACCCTCGTAAGGAAT+TGG 0.409040 5.3:+68664580 None:intergenic
TCAAGGATTCCCAACAATCT+TGG 0.416145 5.3:-68664626 MS.gene29768:CDS
TCCATGGTGCGGGCACTGTA+AGG 0.416505 5.3:-68666815 MS.gene29768:CDS
ACCTTGGACTTGAAGTTGTT+AGG 0.419712 5.3:+68668246 None:intergenic
TTGTTGAATTCTTTGCTCCA+TGG 0.424265 5.3:-68666831 MS.gene29768:CDS
TGCTGATGCTCACCAATCTC+TGG 0.427343 5.3:-68666725 MS.gene29768:CDS
AGTTCAAAAGGAGTCCTTAC+AGG 0.430959 5.3:-68664259 MS.gene29768:intron
CTGGCTCCTTGGTAATCAAC+TGG 0.433932 5.3:+68665755 None:intergenic
AGGAATTGGAGTATCTTTAT+CGG 0.435399 5.3:+68664594 None:intergenic
AGAAACCACCGCTTCTTCTT+CGG 0.438238 5.3:-68665295 MS.gene29768:CDS
AGAGAATTTGTGAAAGAAGC+TGG 0.439854 5.3:-68663617 MS.gene29768:CDS
GTGTTGTCTATAGGATGTTT+TGG 0.440808 5.3:-68664396 MS.gene29768:intron
TTATCAAAAGCAAAGAACTT+TGG 0.443575 5.3:-68665239 MS.gene29768:CDS
TTTGTCAGTCTCTAATGAGC+AGG 0.447245 5.3:-68664657 MS.gene29768:intron
GGTGCAAACACCTTTATAGT+TGG 0.448420 5.3:+68665788 None:intergenic
CCAACTTTCTGCTCAAGGTC+TGG 0.450805 5.3:+68663823 None:intergenic
AACCGTAGAGAGCGTGAGAA+AGG 0.451953 5.3:+68668295 None:intergenic
TGCTCACCAATCTCTGGCTC+AGG 0.454025 5.3:-68666719 MS.gene29768:intron
GTTTAACATCTCTGGCTCCT+TGG 0.454708 5.3:+68665744 None:intergenic
ATGAGCAGGTTCAATGTTCA+AGG 0.456443 5.3:-68664643 MS.gene29768:CDS
AATTCTTTGCTCCATGGTGC+GGG 0.458259 5.3:-68666825 MS.gene29768:CDS
ATCATTCGCACTAGAGCAGC+TGG 0.462465 5.3:-68664539 MS.gene29768:CDS
TTATAGTTCATCTTTGGTTG+AGG 0.465932 5.3:+68663460 None:intergenic
TGTCAGGTTCTGAATTCAAA+TGG 0.470995 5.3:-68666862 MS.gene29768:intron
CTCCAAATACCAAGATTGTT+GGG 0.472339 5.3:+68664617 None:intergenic
GGAAAACCTGAGCCAGAGAT+TGG 0.473756 5.3:+68666713 None:intergenic
CGGTTAAATGGAAAAGCAAC+AGG 0.474554 5.3:-68665336 MS.gene29768:CDS
GCTCCAAATACCAAGATTGT+TGG 0.479181 5.3:+68664616 None:intergenic
AGTGAGTTGAAGAACGGGTG+AGG 0.481557 5.3:+68668269 None:intergenic
ACGTTCAAGGCTACTAATGC+TGG 0.481617 5.3:+68663781 None:intergenic
ATCCTTTCTCACGCTCTCTA+CGG 0.482498 5.3:-68668297 MS.gene29768:CDS
CAGTTGCAGAGAAGTTCAAA+AGG 0.484219 5.3:-68664271 MS.gene29768:CDS
GGTTCTGTCTTTACAATGGT+GGG 0.490337 5.3:+68663554 None:intergenic
ACTATAAAGGTGTTTGCACC+TGG 0.493971 5.3:-68665785 MS.gene29768:CDS
TTAGGAGTGAGTTGAAGAAC+GGG 0.495568 5.3:+68668264 None:intergenic
GAACCATGGGATGGAAAAGA+TGG 0.495841 5.3:-68663536 MS.gene29768:CDS
TGGTTCTGTCTTTACAATGG+TGG 0.496152 5.3:+68663553 None:intergenic
AGAGCATCTAATAATTTGAA+AGG 0.498898 5.3:-68665043 MS.gene29768:CDS
GTTAGGAGTGAGTTGAAGAA+CGG 0.501891 5.3:+68668263 None:intergenic
CGCTTTGGAATCCAAAATGT+CGG 0.502392 5.3:+68664328 None:intergenic
GAAGCTGGACGTGGAGGCAA+AGG 0.515570 5.3:-68663602 MS.gene29768:CDS
AAGGCAGCTACTGTATTAAA+GGG 0.517489 5.3:-68666772 MS.gene29768:CDS
GTAGCTGCCTTCTCCCATAT+AGG 0.519121 5.3:+68666784 None:intergenic
TGGTGGGAGGAGTGTCACCT+AGG 0.522614 5.3:+68663570 None:intergenic
GCTTTGGAATCCAAAATGTC+GGG 0.532296 5.3:+68664329 None:intergenic
TAAGGCTCTGACTCCTATAT+GGG 0.533987 5.3:-68666797 MS.gene29768:CDS
CCAGACCTTGAGCAGAAAGT+TGG 0.535182 5.3:-68663823 MS.gene29768:CDS
GGTGGGAGGAGTGTCACCTA+GGG 0.535529 5.3:+68663571 None:intergenic
GAGCATCTAATAATTTGAAA+GGG 0.535885 5.3:-68665042 MS.gene29768:CDS
ATCTAATAATTTGAAAGGGA+AGG 0.536560 5.3:-68665038 MS.gene29768:CDS
GAATTCTTTGCTCCATGGTG+CGG 0.548779 5.3:-68666826 MS.gene29768:CDS
GAGCAGAAAGTTGGTGTTGG+TGG 0.549595 5.3:-68663814 MS.gene29768:CDS
TCCTAACAACTTCAAGTCCA+AGG 0.552476 5.3:-68668247 MS.gene29768:intron
ATCCAAAATGTCGGGAAGGA+AGG 0.552840 5.3:+68664337 None:intergenic
CCATGGTTCTGTCTTTACAA+TGG 0.553296 5.3:+68663550 None:intergenic
GTAGCCTTGAACGTTAAGAA+AGG 0.556407 5.3:-68663772 MS.gene29768:CDS
CTCTAGTGCGAATGATTCGA+TGG 0.558140 5.3:+68664546 None:intergenic
GGTCTTGAACAGCTATGTAT+GGG 0.559621 5.3:-68663863 MS.gene29768:intron
AAAAGATGGAGAAATAATTG+AGG 0.562273 5.3:-68663522 MS.gene29768:CDS
TGAAGTGCAAATTCTGCGAT+TGG 0.562719 5.3:+68665722 None:intergenic
GCCTTACAGTGCCCGCACCA+TGG 0.567839 5.3:+68666814 None:intergenic
CAACTGTTAATAACTGCTGA+AGG 0.571823 5.3:+68664288 None:intergenic
GCAGTTCTAGCACCCTCGTA+AGG 0.576634 5.3:+68664574 None:intergenic
CAACACCAACTTTCTGCTCA+AGG 0.577087 5.3:+68663818 None:intergenic
GCTCCTTGGTAATCAACTGG+TGG 0.580906 5.3:+68665758 None:intergenic
AGCAGAAAGTTGGTGTTGGT+GGG 0.581032 5.3:-68663813 MS.gene29768:CDS
AAGCTGGACGTGGAGGCAAA+GGG 0.583780 5.3:-68663601 MS.gene29768:CDS
TTTGTGAAAGAAGCTGGACG+TGG 0.587104 5.3:-68663611 MS.gene29768:CDS
AGCTATGTATGGGCAGCTGC+CGG 0.590014 5.3:-68663853 MS.gene29768:CDS
TCTGACTCCTATATGGGAGA+AGG 0.598675 5.3:-68666791 MS.gene29768:CDS
TCTGTCTTTACAATGGTGGG+AGG 0.605063 5.3:+68663557 None:intergenic
TAGTTCTACCGAAGAAGAAG+CGG 0.621191 5.3:+68665287 None:intergenic
AGTTCAAAAGCACTCTTGAG+AGG 0.621890 5.3:+68663739 None:intergenic
CATTGTAAAGACAGAACCAT+GGG 0.623172 5.3:-68663549 MS.gene29768:CDS
TTCTACCGAAGAAGAAGCGG+TGG 0.624355 5.3:+68665290 None:intergenic
GGCAAAGGGAACTTGCCCCT+AGG 0.627464 5.3:-68663587 MS.gene29768:CDS
CTTGAGCAGAAAGTTGGTGT+TGG 0.628583 5.3:-68663817 MS.gene29768:CDS
TTGAAAGGGAAGGTTAAACT+GGG 0.631529 5.3:-68665028 MS.gene29768:CDS
TGGAATCCAAAATGTCGGGA+AGG 0.635224 5.3:+68664333 None:intergenic
GATACTCCAATTCCTTACGA+GGG 0.636183 5.3:-68664586 MS.gene29768:CDS
TGTTGACTGTGATGCTGACA+AGG 0.636371 5.3:-68665002 MS.gene29768:intron
GTAAAGACAGAACCATGGGA+TGG 0.640244 5.3:-68663545 MS.gene29768:CDS
TATAGCTCTGTCACTTCTGG+AGG 0.640322 5.3:+68664502 None:intergenic
GTGAAAGAAGCTGGACGTGG+AGG 0.650513 5.3:-68663608 MS.gene29768:CDS
TTAAATGGAAAAGCAACAGG+TGG 0.661631 5.3:-68665333 MS.gene29768:CDS
AGATACTCCAATTCCTTACG+AGG 0.665654 5.3:-68664587 MS.gene29768:CDS
GTGGGAGGAGTGTCACCTAG+GGG 0.673404 5.3:+68663572 None:intergenic
CCATTGTAAAGACAGAACCA+TGG 0.708421 5.3:-68663550 MS.gene29768:CDS
AAACCACCAGTTGATTACCA+AGG 0.716041 5.3:-68665761 MS.gene29768:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATAAATAATTGAAATAT+AGG + chr5.3:68666628-68666647 None:intergenic 10.0%
!! TATAAATAAATTGAAAAGTA+AGG + chr5.3:68667063-68667082 None:intergenic 10.0%
!! AAAAATAGACTTACATAATT+TGG + chr5.3:68668098-68668117 None:intergenic 15.0%
!! AAATATTTGATTGAAACTTT+AGG + chr5.3:68666157-68666176 None:intergenic 15.0%
!! AATATTTGATTGAAACTTTA+GGG + chr5.3:68666156-68666175 None:intergenic 15.0%
!! AATTTGATTAATAACTTGAA+AGG - chr5.3:68666290-68666309 MS.gene29768:intron 15.0%
!! ATCATCTGAAAAAAATTAAT+AGG - chr5.3:68663899-68663918 MS.gene29768:intron 15.0%
!! ATTTGATTAATAACTTGAAA+GGG - chr5.3:68666291-68666310 MS.gene29768:intron 15.0%
!! TGAAAAATTACTACAAATAA+AGG - chr5.3:68666265-68666284 MS.gene29768:intron 15.0%
!! TTATACTATTGTATTATGAT+TGG - chr5.3:68664799-68664818 MS.gene29768:intron 15.0%
!!! AAAAATTATTCGTATTTTCT+TGG + chr5.3:68664855-68664874 None:intergenic 15.0%
!!! AAAATTATTCGTATTTTCTT+GGG + chr5.3:68664854-68664873 None:intergenic 15.0%
!!! ATAAAATTGTTTGATGTTTT+AGG - chr5.3:68665636-68665655 MS.gene29768:intron 15.0%
!!! TAAAATTGTTTGATGTTTTA+GGG - chr5.3:68665637-68665656 MS.gene29768:intron 15.0%
!!! TTTCTTTTTTTATTTCTCAA+AGG - chr5.3:68666706-68666725 MS.gene29768:intron 15.0%
!! AAAAAACAAGCTAAAAAAGT+GGG + chr5.3:68663627-68663646 None:intergenic 20.0%
!! AAATTTAAATACTGAATCTG+AGG + chr5.3:68665139-68665158 None:intergenic 20.0%
!! AAGGAAAAACTTTACATATA+AGG + chr5.3:68665701-68665720 None:intergenic 20.0%
!! ACACATATTCATATTCATAA+AGG + chr5.3:68665220-68665239 None:intergenic 20.0%
!! ATTGAAAAAAGATTAAACCT+TGG + chr5.3:68663581-68663600 None:intergenic 20.0%
!! CACTAATGTAATTTATTCTT+TGG + chr5.3:68665761-68665780 None:intergenic 20.0%
!! CATGTTTAAATCAAGATAAA+AGG - chr5.3:68667698-68667717 MS.gene29768:intron 20.0%
!! TACTAACTAAACTCAAATTA+AGG - chr5.3:68664528-68664547 MS.gene29768:CDS 20.0%
!! TACTTACATGGAAATATAAT+GGG - chr5.3:68667813-68667832 MS.gene29768:intron 20.0%
!! TCAGAATAATATAAACTGAA+AGG + chr5.3:68667119-68667138 None:intergenic 20.0%
!! TTATAGCTTATATGAAAAAC+AGG - chr5.3:68665448-68665467 MS.gene29768:intron 20.0%
!! TTTAACAAACTGTTATTGTT+CGG - chr5.3:68666915-68666934 MS.gene29768:intron 20.0%
!!! AAATTATTCGTATTTTCTTG+GGG + chr5.3:68664853-68664872 None:intergenic 20.0%
!!! AATGGTTTTTTGTTTGAATT+TGG - chr5.3:68667923-68667942 MS.gene29768:intron 20.0%
!!! ATATTTAAAATAGTTACAGG+AGG + chr5.3:68665571-68665590 None:intergenic 20.0%
!!! ATGGTTTTTTGTTTGAATTT+GGG - chr5.3:68667924-68667943 MS.gene29768:intron 20.0%
!!! CACATATTTAAAATAGTTAC+AGG + chr5.3:68665574-68665593 None:intergenic 20.0%
!!! CTAATTTTATGCTAAATAGT+TGG - chr5.3:68668118-68668137 MS.gene29768:intron 20.0%
!!! CTGTAACTATTTTAAATATG+TGG - chr5.3:68665572-68665591 MS.gene29768:intron 20.0%
!!! TCTTTCAAATTCAACTTTTT+TGG - chr5.3:68667642-68667661 MS.gene29768:intron 20.0%
!!! TTGCAGTTATTTTTAAATTG+CGG - chr5.3:68667780-68667799 MS.gene29768:intron 20.0%
!!! TTTAGCTTGTTTTTTCAAAT+GGG - chr5.3:68663632-68663651 MS.gene29768:intron 20.0%
!!! TTTTAGCTTGTTTTTTCAAA+TGG - chr5.3:68663631-68663650 MS.gene29768:intron 20.0%
! AAAAGATGGAGAAATAATTG+AGG - chr5.3:68668286-68668305 MS.gene29768:CDS 25.0%
! AATATCAATGTATTGGGATT+AGG - chr5.3:68666366-68666385 MS.gene29768:intron 25.0%
! AGTGAGAATATCAATGTATT+GGG - chr5.3:68666360-68666379 MS.gene29768:intron 25.0%
! ATATCAATGTATTGGGATTA+GGG - chr5.3:68666367-68666386 MS.gene29768:intron 25.0%
! ATCTAATAATTTGAAAGGGA+AGG - chr5.3:68666770-68666789 MS.gene29768:CDS 25.0%
! CAATAGTATAAAAGACTGTT+TGG + chr5.3:68664790-68664809 None:intergenic 25.0%
! GAAAAAACAAGCTAAAAAAG+TGG + chr5.3:68663628-68663647 None:intergenic 25.0%
! GAGCATCTAATAATTTGAAA+GGG - chr5.3:68666766-68666785 MS.gene29768:CDS 25.0%
! GTACTTACATGGAAATATAA+TGG - chr5.3:68667812-68667831 MS.gene29768:intron 25.0%
! TAGCACTAAAATTTAGTTGA+AGG - chr5.3:68664192-68664211 MS.gene29768:intron 25.0%
! TATAGTTTATTTGCATGTAC+AGG - chr5.3:68666429-68666448 MS.gene29768:intron 25.0%
! TCAGTTTATATTATTCTGAC+AGG - chr5.3:68667120-68667139 MS.gene29768:intron 25.0%
! TTATCAAAAGCAAAGAACTT+TGG - chr5.3:68666569-68666588 MS.gene29768:intron 25.0%
! TTTATGCTTGAAAACTATCT+GGG - chr5.3:68663684-68663703 MS.gene29768:intron 25.0%
!! AAGTGATTTTATGTTTGGAT+AGG - chr5.3:68664217-68664236 MS.gene29768:intron 25.0%
!! AGAGCATCTAATAATTTGAA+AGG - chr5.3:68666765-68666784 MS.gene29768:CDS 25.0%
!! AGGTAAAGTGATTTTATGTT+TGG - chr5.3:68664212-68664231 MS.gene29768:intron 25.0%
!! ATTAAGTTGTTAATCCCAAT+AGG - chr5.3:68665536-68665555 MS.gene29768:intron 25.0%
!! TAGTGTTACAATTTGGATTT+TGG - chr5.3:68666187-68666206 MS.gene29768:intron 25.0%
!! TTAAGTTGTTAATCCCAATA+GGG - chr5.3:68665537-68665556 MS.gene29768:intron 25.0%
!! TTTTATGCTTGAAAACTATC+TGG - chr5.3:68663683-68663702 MS.gene29768:intron 25.0%
!!! ATGGTTGATTTTATGATTCT+GGG - chr5.3:68663778-68663797 MS.gene29768:CDS 25.0%
!!! TATGGTTGATTTTATGATTC+TGG - chr5.3:68663777-68663796 MS.gene29768:CDS 25.0%
!!! TCAAGTAGAATCTATTTTGA+AGG - chr5.3:68664395-68664414 MS.gene29768:intron 25.0%
!!! TTTTTTATTTCTCAAAGGTG+TGG - chr5.3:68666711-68666730 MS.gene29768:intron 25.0%
AAATAGATTCTACTTGAAGC+TGG + chr5.3:68664392-68664411 None:intergenic 30.0%
AACTCAAATTAAGGTCTGTT+TGG - chr5.3:68664537-68664556 MS.gene29768:CDS 30.0%
AATAAGGGGAAAACAACTTA+TGG + chr5.3:68664645-68664664 None:intergenic 30.0%
AATATTATGCCATAAAGCAC+CGG - chr5.3:68663968-68663987 MS.gene29768:intron 30.0%
AATTGTAACACTACACATGT+TGG + chr5.3:68666180-68666199 None:intergenic 30.0%
ACATGTGTAGTGTTACAATT+TGG - chr5.3:68666180-68666199 MS.gene29768:intron 30.0%
AGGAATGAAGAAATGAACAA+TGG + chr5.3:68665119-68665138 None:intergenic 30.0%
ATGCAGATAGCAAAAAATAG+CGG + chr5.3:68667020-68667039 None:intergenic 30.0%
ATTAACTCATGAGTCATAGA+GGG + chr5.3:68667623-68667642 None:intergenic 30.0%
CCTGTTATGATTTACATGTT+CGG - chr5.3:68665886-68665905 MS.gene29768:intron 30.0%
GAAATTGTAGCTTCTAATTC+TGG + chr5.3:68664291-68664310 None:intergenic 30.0%
GAACCTGACATTATTCAAAA+TGG + chr5.3:68664936-68664955 None:intergenic 30.0%
GAGTGAGAATATCAATGTAT+TGG - chr5.3:68666359-68666378 MS.gene29768:intron 30.0%
GATATACAATATGTAGAGCA+TGG + chr5.3:68665679-68665698 None:intergenic 30.0%
TACAATCAAGTAAAGTTTGC+AGG + chr5.3:68667354-68667373 None:intergenic 30.0%
TAGAGGATTTCCAACTATAA+AGG - chr5.3:68666010-68666029 MS.gene29768:intron 30.0%
TCGAATAAACCAATCTAAAC+AGG + chr5.3:68665329-68665348 None:intergenic 30.0%
TCTAATACCATATTCCTGAA+GGG + chr5.3:68665994-68666013 None:intergenic 30.0%
TGAAGAGCCTATGAAAATAA+GGG + chr5.3:68664660-68664679 None:intergenic 30.0%
TTATAGTTCATCTTTGGTTG+AGG + chr5.3:68668351-68668370 None:intergenic 30.0%
TTATTTGCATGTACAGGTAA+AGG - chr5.3:68666435-68666454 MS.gene29768:intron 30.0%
TTGAAGAGCCTATGAAAATA+AGG + chr5.3:68664661-68664680 None:intergenic 30.0%
! AGATAGATGTCTTCTTTTTG+TGG - chr5.3:68666217-68666236 MS.gene29768:intron 30.0%
! AGGAATTGGAGTATCTTTAT+CGG + chr5.3:68667217-68667236 None:intergenic 30.0%
! ATTTGATTGAAACTTTAGGG+AGG + chr5.3:68666153-68666172 None:intergenic 30.0%
! ATTTTCTCTTGAAGAACTCA+TGG - chr5.3:68668316-68668335 MS.gene29768:CDS 30.0%
! GTAATGCATCAGGTTTTTAT+GGG - chr5.3:68664908-68664927 MS.gene29768:intron 30.0%
! TAAACATGAGTGTTGTCTAT+AGG - chr5.3:68667403-68667422 MS.gene29768:intron 30.0%
! TATCTAGTTTGTAATGCATC+AGG - chr5.3:68664898-68664917 MS.gene29768:intron 30.0%
! TGTAATGCATCAGGTTTTTA+TGG - chr5.3:68664907-68664926 MS.gene29768:intron 30.0%
! TGTTGATTAGTGTGTGAATA+TGG - chr5.3:68663759-68663778 MS.gene29768:CDS 30.0%
! TTGGTTGCTTTACATAGAAT+GGG + chr5.3:68665742-68665761 None:intergenic 30.0%
! TTTGATTGAAACTTTAGGGA+GGG + chr5.3:68666152-68666171 None:intergenic 30.0%
! TTTGGTTGCTTTACATAGAA+TGG + chr5.3:68665743-68665762 None:intergenic 30.0%
! TTTTATGATTCTGGGTTTTG+TGG - chr5.3:68663786-68663805 MS.gene29768:CDS 30.0%
! TTTTCTCTTGAAGAACTCAT+GGG - chr5.3:68668317-68668336 MS.gene29768:CDS 30.0%
!! GAAATATAATGGGTTCTCAT+TGG - chr5.3:68667823-68667842 MS.gene29768:intron 30.0%
!!! CAGGAGCTAATTTTTTACAA+TGG + chr5.3:68666737-68666756 None:intergenic 30.0%
!!! TGTTTTCCCCTTATTTTCAT+AGG - chr5.3:68664650-68664669 MS.gene29768:CDS 30.0%
!!! TGTTTTTTTACTTGCCTGTA+AGG + chr5.3:68667566-68667585 None:intergenic 30.0%
AACACCTTTCTTAACGTTCA+AGG + chr5.3:68668043-68668062 None:intergenic 35.0%
AAGGCAGCTACTGTATTAAA+GGG - chr5.3:68665036-68665055 MS.gene29768:CDS 35.0%
AAGTACCTGTTAGACAGTTA+GGG - chr5.3:68665364-68665383 MS.gene29768:intron 35.0%
AAGTAGATTCTACTTGAAGC+TGG + chr5.3:68664313-68664332 None:intergenic 35.0%
ACACAACATCTATGAAAGCA+CGG + chr5.3:68664113-68664132 None:intergenic 35.0%
AGAGAATTTGTGAAAGAAGC+TGG - chr5.3:68668191-68668210 MS.gene29768:intron 35.0%
CAACTGTTAATAACTGCTGA+AGG + chr5.3:68667523-68667542 None:intergenic 35.0%
CACTGACACATTTGTTTACA+TGG - chr5.3:68664022-68664041 MS.gene29768:intron 35.0%
CATTGTAAAGACAGAACCAT+GGG - chr5.3:68668259-68668278 MS.gene29768:CDS 35.0%
CATTTCTGTACAATGTACAC+TGG - chr5.3:68665254-68665273 MS.gene29768:CDS 35.0%
CCGAACATGTAAATCATAAC+AGG + chr5.3:68665889-68665908 None:intergenic 35.0%
CTACTCATGGTGATTCATTA+AGG - chr5.3:68664429-68664448 MS.gene29768:intron 35.0%
CTCCAAATACCAAGATTGTT+GGG + chr5.3:68667194-68667213 None:intergenic 35.0%
CTCTAATACCATATTCCTGA+AGG + chr5.3:68665995-68666014 None:intergenic 35.0%
CTCTAGTAACTTCGATGAAT+TGG - chr5.3:68666546-68666565 MS.gene29768:intron 35.0%
CTGGAAATACATACCTTTGA+TGG - chr5.3:68665273-68665292 MS.gene29768:CDS 35.0%
CTTAATTCCCTTCAGGAATA+TGG - chr5.3:68665984-68666003 MS.gene29768:intron 35.0%
CTTCAGGAATATGGTATTAG+AGG - chr5.3:68665993-68666012 MS.gene29768:intron 35.0%
CTTTGTTGACGAATGCTTAA+TGG - chr5.3:68667905-68667924 MS.gene29768:intron 35.0%
GAAGAGCCTATGAAAATAAG+GGG + chr5.3:68664659-68664678 None:intergenic 35.0%
GAATCAGTTTCGTCAAATAG+CGG - chr5.3:68666875-68666894 MS.gene29768:intron 35.0%
GATAGGTTCATGTAAAAGTG+AGG - chr5.3:68664234-68664253 MS.gene29768:intron 35.0%
GATTAACTCATGAGTCATAG+AGG + chr5.3:68667624-68667643 None:intergenic 35.0%
GCTTCAAGTAGAATCTACTT+TGG - chr5.3:68664313-68664332 MS.gene29768:CDS 35.0%
GGCAAAATCAATTCTACTCA+TGG - chr5.3:68664416-68664435 MS.gene29768:intron 35.0%
GTAAAAAATTAGCTCCTGAG+TGG - chr5.3:68666739-68666758 MS.gene29768:CDS 35.0%
GTAGAATTACATGTTCAGTC+AGG + chr5.3:68666650-68666669 None:intergenic 35.0%
GTTTGATGAAGATGCATTGT+TGG + chr5.3:68667873-68667892 None:intergenic 35.0%
TAAGTACCTGTTAGACAGTT+AGG - chr5.3:68665363-68665382 MS.gene29768:intron 35.0%
TACAATATGTAGAGCATGGT+AGG + chr5.3:68665675-68665694 None:intergenic 35.0%
TCAAGTAGAATCTACTTTGG+AGG - chr5.3:68664316-68664335 MS.gene29768:CDS 35.0%
TTAAATGGAAAAGCAACAGG+TGG - chr5.3:68666475-68666494 MS.gene29768:intron 35.0%
TTACATAGAATGGGAAGACT+AGG + chr5.3:68665733-68665752 None:intergenic 35.0%
TTCCCAACAATCTTGGTATT+TGG - chr5.3:68667189-68667208 MS.gene29768:intron 35.0%
TTGAAAGGGAAGGTTAAACT+GGG - chr5.3:68666780-68666799 MS.gene29768:CDS 35.0%
TTGTTGAATTCTTTGCTCCA+TGG - chr5.3:68664977-68664996 MS.gene29768:intron 35.0%
TTTGAAAGGGAAGGTTAAAC+TGG - chr5.3:68666779-68666798 MS.gene29768:CDS 35.0%
! GGTATTGAACCTGTTTAGAT+TGG - chr5.3:68665317-68665336 MS.gene29768:CDS 35.0%
! GTCTTTTCTTAATTCCCTTC+AGG - chr5.3:68665977-68665996 MS.gene29768:intron 35.0%
! GTGTTGTCTATAGGATGTTT+TGG - chr5.3:68667412-68667431 MS.gene29768:intron 35.0%
! TATTCGTATTTTCTTGGGGA+GGG + chr5.3:68664849-68664868 None:intergenic 35.0%
! TTATTCGTATTTTCTTGGGG+AGG + chr5.3:68664850-68664869 None:intergenic 35.0%
! TTGTAGAATTTTTCGCACCT+TGG - chr5.3:68666593-68666612 MS.gene29768:intron 35.0%
! TTTGCTATGTTGCTGTATTG+TGG - chr5.3:68663724-68663743 MS.gene29768:intron 35.0%
!! AATATAGGAAGTACTCACCA+AGG + chr5.3:68666613-68666632 None:intergenic 35.0%
!! CTTTTGAAGGAACGGTTAAA+TGG - chr5.3:68666460-68666479 MS.gene29768:intron 35.0%
!! TAAAGGCTCTTTTGAAGGAA+CGG - chr5.3:68666452-68666471 MS.gene29768:intron 35.0%
!! TGTCAGGTTCTGAATTCAAA+TGG - chr5.3:68664946-68664965 MS.gene29768:intron 35.0%
!!! GATGTTTTGGAAGAGAAATG+TGG - chr5.3:68667425-68667444 MS.gene29768:intron 35.0%
!!! GTGCCATTTTGAATAATGTC+AGG - chr5.3:68664930-68664949 MS.gene29768:intron 35.0%
AAAAAAGTGGGATCACGAAC+TGG + chr5.3:68663615-68663634 None:intergenic 40.0%
AAAAAGTGGGATCACGAACT+GGG + chr5.3:68663614-68663633 None:intergenic 40.0%
AAACCACCAGTTGATTACCA+AGG - chr5.3:68666047-68666066 MS.gene29768:intron 40.0%
AAATGTGTCAGTGTCTGTGT+CGG + chr5.3:68664015-68664034 None:intergenic 40.0%
AAGCATTCGTCAACAAAGAC+TGG + chr5.3:68667903-68667922 None:intergenic 40.0%
ACAAATGTCATGTAAGCGAC+AGG + chr5.3:68665817-68665836 None:intergenic 40.0%
ACCTTGGACTTGAAGTTGTT+AGG + chr5.3:68663565-68663584 None:intergenic 40.0%
ACTCTTCTTGCAACATCACT+TGG - chr5.3:68666316-68666335 MS.gene29768:intron 40.0%
ACTTTCCCTAACTGTCTAAC+AGG + chr5.3:68665372-68665391 None:intergenic 40.0%
AGATACTCCAATTCCTTACG+AGG - chr5.3:68667221-68667240 MS.gene29768:intron 40.0%
AGTTCAAAAGGAGTCCTTAC+AGG - chr5.3:68667549-68667568 MS.gene29768:intron 40.0%
ATGAGCAGGTTCAATGTTCA+AGG - chr5.3:68667165-68667184 MS.gene29768:intron 40.0%
ATGCTGACAAGGTAAGCTTA+TGG - chr5.3:68666817-68666836 MS.gene29768:CDS 40.0%
CAGTTGCAGAGAAGTTCAAA+AGG - chr5.3:68667537-68667556 MS.gene29768:intron 40.0%
CCATTGTAAAGACAGAACCA+TGG - chr5.3:68668258-68668277 MS.gene29768:CDS 40.0%
CGGTTAAATGGAAAAGCAAC+AGG - chr5.3:68666472-68666491 MS.gene29768:intron 40.0%
GAAGACTAGGAATGTAACGA+AGG + chr5.3:68665720-68665739 None:intergenic 40.0%
GAAGGCAGCTACTGTATTAA+AGG - chr5.3:68665035-68665054 MS.gene29768:CDS 40.0%
GATACTCCAATTCCTTACGA+GGG - chr5.3:68667222-68667241 MS.gene29768:intron 40.0%
GCTCCAAATACCAAGATTGT+TGG + chr5.3:68667195-68667214 None:intergenic 40.0%
GGTCTTGAACAGCTATGTAT+GGG - chr5.3:68667945-68667964 MS.gene29768:intron 40.0%
GGTGCAAACACCTTTATAGT+TGG + chr5.3:68666023-68666042 None:intergenic 40.0%
GGTTCTGTCTTTACAATGGT+GGG + chr5.3:68668257-68668276 None:intergenic 40.0%
GGTTGCAAAGTGTACTTACA+TGG - chr5.3:68667801-68667820 MS.gene29768:intron 40.0%
GTTGTGTATGTTTCGTTCTG+TGG - chr5.3:68664126-68664145 MS.gene29768:intron 40.0%
TCAAGGATTCCCAACAATCT+TGG - chr5.3:68667182-68667201 MS.gene29768:intron 40.0%
TCCTAACAACTTCAAGTCCA+AGG - chr5.3:68663561-68663580 MS.gene29768:CDS 40.0%
TGAAGTGCAAATTCTGCGAT+TGG + chr5.3:68666089-68666108 None:intergenic 40.0%
TGCTATAGTGCTTCTATAGC+TGG + chr5.3:68666976-68666995 None:intergenic 40.0%
TTGCACTTCAACAGGTTTGT+TGG - chr5.3:68666099-68666118 MS.gene29768:intron 40.0%
TTTGTCAGTCTCTAATGAGC+AGG - chr5.3:68667151-68667170 MS.gene29768:intron 40.0%
! ACAGGTAAAGGCTCTTTTGA+AGG - chr5.3:68666447-68666466 MS.gene29768:intron 40.0%
! ATTCGTATTTTCTTGGGGAG+GGG + chr5.3:68664848-68664867 None:intergenic 40.0%
! ATTTTGGATTCCAAAGCGGA+GGG - chr5.3:68667485-68667504 MS.gene29768:intron 40.0%
! CCATGGTTCTGTCTTTACAA+TGG + chr5.3:68668261-68668280 None:intergenic 40.0%
! CGACATTTTGGATTCCAAAG+CGG - chr5.3:68667481-68667500 MS.gene29768:intron 40.0%
! CTATATAGCTCTGTCACTTC+TGG + chr5.3:68667312-68667331 None:intergenic 40.0%
! CTATCTGGGTGTTTTGTGTT+TGG - chr5.3:68663698-68663717 MS.gene29768:intron 40.0%
! GTAGCCTTGAACGTTAAGAA+AGG - chr5.3:68668036-68668055 MS.gene29768:intron 40.0%
! GTTAGGAGTGAGTTGAAGAA+CGG + chr5.3:68663548-68663567 None:intergenic 40.0%
! TAAGGCTCTGACTCCTATAT+GGG - chr5.3:68665011-68665030 MS.gene29768:CDS 40.0%
! TAATCAACTGGTGGTTTTCC+AGG + chr5.3:68666044-68666063 None:intergenic 40.0%
! TACATACCTTTGATGGACCA+CGG - chr5.3:68665280-68665299 MS.gene29768:CDS 40.0%
! TAGTTCTACCGAAGAAGAAG+CGG + chr5.3:68666524-68666543 None:intergenic 40.0%
! TGGTTCTGTCTTTACAATGG+TGG + chr5.3:68668258-68668277 None:intergenic 40.0%
! TTAGATGCTCTTTTCCACTC+AGG + chr5.3:68666756-68666775 None:intergenic 40.0%
! TTAGGAGTGAGTTGAAGAAC+GGG + chr5.3:68663547-68663566 None:intergenic 40.0%
!! ACTATAAAGGTGTTTGCACC+TGG - chr5.3:68666023-68666042 MS.gene29768:intron 40.0%
!! AGTTCAAAAGCACTCTTGAG+AGG + chr5.3:68668072-68668091 None:intergenic 40.0%
!! CGCTTTGGAATCCAAAATGT+CGG + chr5.3:68667483-68667502 None:intergenic 40.0%
!! GCTTTGGAATCCAAAATGTC+GGG + chr5.3:68667482-68667501 None:intergenic 40.0%
!! GGTTTGTTGGAATCTCTTCT+TGG - chr5.3:68666112-68666131 MS.gene29768:intron 40.0%
!! TGCGATTGGTTTAACATCTC+TGG + chr5.3:68666075-68666094 None:intergenic 40.0%
AATTCTTTGCTCCATGGTGC+GGG - chr5.3:68664983-68665002 MS.gene29768:intron 45.0%
ACGTTCAAGGCTACTAATGC+TGG + chr5.3:68668030-68668049 None:intergenic 45.0%
AGAAACCACCGCTTCTTCTT+CGG - chr5.3:68666513-68666532 MS.gene29768:intron 45.0%
ATCCAAAATGTCGGGAAGGA+AGG + chr5.3:68667474-68667493 None:intergenic 45.0%
ATCCTTTCTCACGCTCTCTA+CGG - chr5.3:68663511-68663530 MS.gene29768:CDS 45.0%
CAACACCAACTTTCTGCTCA+AGG + chr5.3:68667993-68668012 None:intergenic 45.0%
CGCAGAATTTGCACTTCAAC+AGG - chr5.3:68666091-68666110 MS.gene29768:intron 45.0%
CTCTAGTGCGAATGATTCGA+TGG + chr5.3:68667265-68667284 None:intergenic 45.0%
GAACCATGGGATGGAAAAGA+TGG - chr5.3:68668272-68668291 MS.gene29768:CDS 45.0%
GAATTCTTTGCTCCATGGTG+CGG - chr5.3:68664982-68665001 MS.gene29768:intron 45.0%
GGGTCTTGAACAGCTATGTA+TGG - chr5.3:68667944-68667963 MS.gene29768:intron 45.0%
GTAAAGACAGAACCATGGGA+TGG - chr5.3:68668263-68668282 MS.gene29768:CDS 45.0%
GTAGAGCATGGTAGGATCTT+GGG + chr5.3:68665667-68665686 None:intergenic 45.0%
GTCAGTGTCCATGTCGTATT+AGG - chr5.3:68664084-68664103 MS.gene29768:intron 45.0%
TCTGACTCCTATATGGGAGA+AGG - chr5.3:68665017-68665036 MS.gene29768:CDS 45.0%
TGGAATCCAAAATGTCGGGA+AGG + chr5.3:68667478-68667497 None:intergenic 45.0%
TGTAGAGCATGGTAGGATCT+TGG + chr5.3:68665668-68665687 None:intergenic 45.0%
TTTGTGAAAGAAGCTGGACG+TGG - chr5.3:68668197-68668216 MS.gene29768:intron 45.0%
! CATTTTGGATTCCAAAGCGG+AGG - chr5.3:68667484-68667503 MS.gene29768:intron 45.0%
! GAAGCACTATAGCACTGTAG+TGG - chr5.3:68666982-68667001 MS.gene29768:intron 45.0%
! GTAAGGCTCTGACTCCTATA+TGG - chr5.3:68665010-68665029 MS.gene29768:CDS 45.0%
! GTTTAACATCTCTGGCTCCT+TGG + chr5.3:68666067-68666086 None:intergenic 45.0%
! TATAGCTCTGTCACTTCTGG+AGG + chr5.3:68667309-68667328 None:intergenic 45.0%
! TCTCCATCTTTTCCATCCCA+TGG + chr5.3:68668278-68668297 None:intergenic 45.0%
! TCTGTCTTTACAATGGTGGG+AGG + chr5.3:68668254-68668273 None:intergenic 45.0%
! TGTTGACTGTGATGCTGACA+AGG - chr5.3:68666806-68666825 MS.gene29768:CDS 45.0%
! TTCCTTCCTTCCCGACATTT+TGG - chr5.3:68667469-68667488 MS.gene29768:intron 45.0%
! TTTTGGATTCCAAAGCGGAG+GGG - chr5.3:68667486-68667505 MS.gene29768:intron 45.0%
!! AAAGTTGGTGTTGGTGGGTA+TGG - chr5.3:68668000-68668019 MS.gene29768:intron 45.0%
!! AGCAGAAAGTTGGTGTTGGT+GGG - chr5.3:68667995-68668014 MS.gene29768:intron 45.0%
!! CTTGAGCAGAAAGTTGGTGT+TGG - chr5.3:68667991-68668010 MS.gene29768:intron 45.0%
ACCACGGACGATGCAAAACA+TGG - chr5.3:68665296-68665315 MS.gene29768:CDS 50.0%
ACGACATGGACACTGACATG+TGG + chr5.3:68664081-68664100 None:intergenic 50.0%
AGGAGGACACTTGACCCTAT+TGG + chr5.3:68665554-68665573 None:intergenic 50.0%
ATCATTCGCACTAGAGCAGC+TGG - chr5.3:68667269-68667288 MS.gene29768:intron 50.0%
CACGGACACCTAATACGACA+TGG + chr5.3:68664095-68664114 None:intergenic 50.0%
CCAACTTTCTGCTCAAGGTC+TGG + chr5.3:68667988-68668007 None:intergenic 50.0%
CCAGACCTTGAGCAGAAAGT+TGG - chr5.3:68667985-68668004 MS.gene29768:intron 50.0%
CTAGCACCCTCGTAAGGAAT+TGG + chr5.3:68667231-68667250 None:intergenic 50.0%
GCAGGAGAACAAACACTCAC+TGG + chr5.3:68667336-68667355 None:intergenic 50.0%
GGAAAACCTGAGCCAGAGAT+TGG + chr5.3:68665098-68665117 None:intergenic 50.0%
GGAGGACACTTGACCCTATT+GGG + chr5.3:68665553-68665572 None:intergenic 50.0%
GTAGCTGCCTTCTCCCATAT+AGG + chr5.3:68665027-68665046 None:intergenic 50.0%
TGCTGATGCTCACCAATCTC+TGG - chr5.3:68665083-68665102 MS.gene29768:CDS 50.0%
TTCTACCGAAGAAGAAGCGG+TGG + chr5.3:68666521-68666540 None:intergenic 50.0%
! AACCGTAGAGAGCGTGAGAA+AGG + chr5.3:68663516-68663535 None:intergenic 50.0%
! ACCATGTTTTGCATCGTCCG+TGG + chr5.3:68665300-68665319 None:intergenic 50.0%
! AGTGAGTTGAAGAACGGGTG+AGG + chr5.3:68663542-68663561 None:intergenic 50.0%
! CTGGCTCCTTGGTAATCAAC+TGG + chr5.3:68666056-68666075 None:intergenic 50.0%
! GCTCCTTGGTAATCAACTGG+TGG + chr5.3:68666053-68666072 None:intergenic 50.0%
!! CATAAAGCACCGGCACTCTT+CGG - chr5.3:68663978-68663997 MS.gene29768:intron 50.0%
!! GAGCAGAAAGTTGGTGTTGG+TGG - chr5.3:68667994-68668013 MS.gene29768:intron 50.0%
AAGCTGGACGTGGAGGCAAA+GGG - chr5.3:68668207-68668226 MS.gene29768:intron 55.0%
AGCTATGTATGGGCAGCTGC+CGG - chr5.3:68667955-68667974 MS.gene29768:intron 55.0%
CATCGTCCGTGGTCCATCAA+AGG + chr5.3:68665289-68665308 None:intergenic 55.0%
CTCAAGGTCTGGCTGCTTAC+CGG + chr5.3:68667977-68667996 None:intergenic 55.0%
GTGAAAGAAGCTGGACGTGG+AGG - chr5.3:68668200-68668219 MS.gene29768:intron 55.0%
TGTCAGTGTCTGTGTCGGAC+AGG + chr5.3:68664010-68664029 None:intergenic 55.0%
! AGGCCTAATCCGAAGAGTGC+CGG + chr5.3:68663990-68664009 None:intergenic 55.0%
! GCAGTTCTAGCACCCTCGTA+AGG + chr5.3:68667237-68667256 None:intergenic 55.0%
! TCTGTTTCTCCCCTCCGCTT+TGG + chr5.3:68667498-68667517 None:intergenic 55.0%
! TGCTCACCAATCTCTGGCTC+AGG - chr5.3:68665089-68665108 MS.gene29768:intron 55.0%
!! CGAAGAGTGCCGGTGCTTTA+TGG + chr5.3:68663980-68663999 None:intergenic 55.0%
GAAGCTGGACGTGGAGGCAA+AGG - chr5.3:68668206-68668225 MS.gene29768:intron 60.0%
GGCAAAGGGAACTTGCCCCT+AGG - chr5.3:68668221-68668240 MS.gene29768:intron 60.0%
! GCACCGGCACTCTTCGGATT+AGG - chr5.3:68663984-68664003 MS.gene29768:intron 60.0%
! TCCATGGTGCGGGCACTGTA+AGG - chr5.3:68664993-68665012 MS.gene29768:intron 60.0%
!! GGTGGGAGGAGTGTCACCTA+GGG + chr5.3:68668240-68668259 None:intergenic 60.0%
!! GTGGGAGGAGTGTCACCTAG+GGG + chr5.3:68668239-68668258 None:intergenic 60.0%
!! TGGTGGGAGGAGTGTCACCT+AGG + chr5.3:68668241-68668260 None:intergenic 60.0%
GCCTTACAGTGCCCGCACCA+TGG + chr5.3:68664997-68665016 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 68663460 68668370 68663460 ID=MS.gene29768
chr5.3 mRNA 68663460 68668370 68663460 ID=MS.gene29768.t1;Parent=MS.gene29768
chr5.3 exon 68668248 68668370 68668248 ID=MS.gene29768.t1.exon1;Parent=MS.gene29768.t1
chr5.3 CDS 68668248 68668370 68668248 ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1
chr5.3 exon 68666720 68666878 68666720 ID=MS.gene29768.t1.exon2;Parent=MS.gene29768.t1
chr5.3 CDS 68666720 68666878 68666720 ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1
chr5.3 exon 68665718 68665831 68665718 ID=MS.gene29768.t1.exon3;Parent=MS.gene29768.t1
chr5.3 CDS 68665718 68665831 68665718 ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1
chr5.3 exon 68665216 68665379 68665216 ID=MS.gene29768.t1.exon4;Parent=MS.gene29768.t1
chr5.3 CDS 68665216 68665379 68665216 ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1
chr5.3 exon 68665003 68665102 68665003 ID=MS.gene29768.t1.exon5;Parent=MS.gene29768.t1
chr5.3 CDS 68665003 68665102 68665003 ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1
chr5.3 exon 68664495 68664671 68664495 ID=MS.gene29768.t1.exon6;Parent=MS.gene29768.t1
chr5.3 CDS 68664495 68664671 68664495 ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1
chr5.3 exon 68664260 68664405 68664260 ID=MS.gene29768.t1.exon7;Parent=MS.gene29768.t1
chr5.3 CDS 68664260 68664405 68664260 ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1
chr5.3 exon 68663727 68663873 68663727 ID=MS.gene29768.t1.exon8;Parent=MS.gene29768.t1
chr5.3 CDS 68663727 68663873 68663727 ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1
chr5.3 exon 68663460 68663637 68663460 ID=MS.gene29768.t1.exon9;Parent=MS.gene29768.t1
chr5.3 CDS 68663460 68663637 68663460 ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1
Gene Sequence

>MS.gene29768

ATGGCGAAACTCTCATTCATTGCTGTAACTATCTTTCTCTTCAACAATCTCATCCTTTCTCACGCTCTCTACGGTTCTTCCTCACCCGTTCTTCAACTCACTCCTAACAACTTCAAGTCCAAGGTTTAATCTTTTTTCAATTTTTCATTGACCCAGTTCGTGATCCCACTTTTTTAGCTTGTTTTTTCAAATGGGTATTGCGTAGAATTGTTAAATTTTGTAGTTTTATGCTTGAAAACTATCTGGGTGTTTTGTGTTTGGAATTTTGCTATGTTGCTGTATTGTGGTGTTTCTGTTTTTGTTGATTAGTGTGTGAATATGGTTGATTTTATGATTCTGGGTTTTGTGGAATTACAATTTTTTGATTTGTGTGATATATATAATGTAACAAATCTGTTGATTCATACTATTATGCAAGTATGTGTTAATGTTGTGTTTTATCATCTGAAAAAAATTAATAGGTTTTAATTTATATAAACTCTTAAAAAGATCTTTTAATTCATGTGTTAATATTATGCCATAAAGCACCGGCACTCTTCGGATTAGGCCTGTCCGACACAGACACTGACACATTTGTTTACATGGAATTATGTCATTTTCTAAAATTATTATCGATTTCCACATGTCAGTGTCCATGTCGTATTAGGTGTCCGTGCTTTCATAGATGTTGTGTATGTTTCGTTCTGTGGTGAGAAAAATTGATTTTGAAAGAATTGATTATGTGAAATTGATTAGCACTAAAATTTAGTTGAAGGTAAAGTGATTTTATGTTTGGATAGGTTCATGTAAAAGTGAGGTGAACAATAAATTTGAGTGTAAAAAACAATACCAGAATTAGAAGCTACAATTTCCAGCTTCAAGTAGAATCTACTTTGGAGGCAAAATCAATTATATTCTAAAAAAAATTCTAGAATTAGAAGCTACAATGTCCAGCTTCAAGTAGAATCTATTTTGAAGGCAAAATCAATTCTACTCATGGTGATTCATTAAGGACGTTTCGATTTAATCATAACTACTTCTAAAGTCACACATATGATTGCATGTGATTCATTGCTGTAAATATTTTTATACTAACTAAACTCAAATTAAGGTCTGTTTGGATTGTTTTATATGAACTTATCTATTTACATTAGCACTTATAAGACTGTTTGAGAGAACTTACGAAAATTGCTCATGACGTGTCCATAAGTTGTTTTCCCCTTATTTTCATAGGCTCTTCAAGATAGCTTATGAAAACAGTCTATAACTTGTATGAAAACATTTTGATTTTATTTGATCTTTTGTTATAAAGATAAATTATACATATGCACTTAATTAAGTTGTTTATCCAAACAGTCTTTTATACTATTGTATTATGATTGGACTTTGATATGATGAAATACTAGCCCCTCCCCAAGAAAATACGAATAATTTTTATGAGTTAGCTTTTTCTTTGCTTTATCTAGTTTGTAATGCATCAGGTTTTTATGGGTGCCATTTTGAATAATGTCAGGTTCTGAATTCAAATGGAGTTGTTCTTGTTGAATTCTTTGCTCCATGGTGCGGGCACTGTAAGGCTCTGACTCCTATATGGGAGAAGGCAGCTACTGTATTAAAGGGTGTAGTTACTGTTGCAGCACTTGATGCTGATGCTCACCAATCTCTGGCTCAGGTTTTCCATTGTTCATTTCTTCATTCCTCAGATTCAGTATTTAAATTTAAATGACATATATTAAAGTAAGACTATGCTGCATGTGTTGTTTTCATCTTACATTTAACCTTTATGAATATGAATATGTGTTATTATATGTTTCACATTTCTGTACAATGTACACTGGAAATACATACCTTTGATGGACCACGGACGATGCAAAACATGGTATTGAACCTGTTTAGATTGGTTTATTCGAGTTAACTATTGACATAAGTACCTGTTAGACAGTTAGGGAAAGTTTATGAAAACTGTGTATGACATGTTCATAAGCTCTATGATAACTTATGAAAGCAGCTTATAGCTTATATGAAAAACAGGTTGAATTTGTTTTATCTTTTTTATAGAAATAGTTTCTACATAAACACTTATATGATAAGTGCTTAATTAAGTTGTTAATCCCAATAGGGTCAAGTGTCCTCCTGTAACTATTTTAAATATGTGGCATATGATTAATTTGACGTCATCATTTTGATCATTTTAGATATAAAATTGTTTGATGTTTTAGGGCATGCCCAAGATCCTACCATGCTCTACATATTGTATATCCTTATATGTAAAGTTTTTCCTTCGTTACATTCCTAGTCTTCCCATTCTATGTAAAGCAACCAAAGAATAAATTACATTAGTGAATAAGAATATGTTTGTTGAGATTATTTATTTTCCTGTCGCTTACATGACATTTGTTATTGTTTGCATGATGAAATATTTATTCATCTAATGCTTGTATCTTTCTCCTGTTATGATTTACATGTTCGGCTATTTTCTTCATTTATTTTATTATAACTGTAAATTGCAAAATTTGAAAAAATCATTTAGATTTTTGTGTCTTTTCTTAATTCCCTTCAGGAATATGGTATTAGAGGATTTCCAACTATAAAGGTGTTTGCACCTGGAAAACCACCAGTTGATTACCAAGGAGCCAGAGATGTTAAACCAATCGCAGAATTTGCACTTCAACAGGTTTGTTGGAATCTCTTCTTGGATGTTTTAACATTTCCCTCCCTAAAGTTTCAATCAAATATTTCCAACATGTGTAGTGTTACAATTTGGATTTTGGATAGAGTAGATAGATGTCTTCTTTTTGTGGAAAACAACAATTTCTTGTACTTTTATGAAAAATTACTACAAATAAAGGAGAATTTGATTAATAACTTGAAAGGGAAACTCTTCTTGCAACATCACTTGGTAGTGTACAAAATTTCAGCAGAGTGAGAATATCAATGTATTGGGATTAGGGTTGACTGTTCAGTGACTACTGCTTGTAATATTGTGTGATTATAGTTTATTTGCATGTACAGGTAAAGGCTCTTTTGAAGGAACGGTTAAATGGAAAAGCAACAGGTGGATCAAATGAAAAAAAAGAAACCACCGCTTCTTCTTCGGTAGAACTAAACTCTAGTAACTTCGATGAATTGGTTATCAAAAGCAAAGAACTTTGGATTGTAGAATTTTTCGCACCTTGGTGAGTACTTCCTATATTTCAATTATTTATTACCTGACTGAACATGTAATTCTACTTTCAGATTTGCAGTTTCTAAATCTAATAACAACTTTTTCTTTTTTTATTTCTCAAAGGTGTGGCCATTGTAAAAAATTAGCTCCTGAGTGGAAAAGAGCATCTAATAATTTGAAAGGGAAGGTTAAACTGGGTCATGTTGACTGTGATGCTGACAAGGTAAGCTTATGGAGTATATCTAATCTCATAGTAGTTGATAAAAATTAGAATCAGTTTCGTCAAATAGCGGCTATAGCGTAGCAGAATTTTAACAAACTGTTATTGTTCGGTGATATACAATTTAGTAGAAAGTGTTGTCAAATAGCCAGCTATAGAAGCACTATAGCACTGTAGTGGAACTTTAACAAACCGCTATTTTTTGCTATCTGCATGATGATCAAGATGATCTCAACCTTACTTTTCAATTTATTTATATTATTAGTGTTCAATATTAAGCTTTTTATTCTGCCTTTCAGTTTATATTATTCTGACAGGATATTTTTTTTGTCAGTCTCTAATGAGCAGGTTCAATGTTCAAGGATTCCCAACAATCTTGGTATTTGGAGCCGATAAAGATACTCCAATTCCTTACGAGGGTGCTAGAACTGCATCAGCCATCGAATCATTCGCACTAGAGCAGCTGGAAACAAATGTTGCTCCTCCAGAAGTGACAGAGCTATATAGTCCAGTGAGTGTTTGTTCTCCTGCAAACTTTACTTGATTGTACACTGATTTGAAAGAAAGAATATAAGATATAAACATGAGTGTTGTCTATAGGATGTTTTGGAAGAGAAATGTGGTTCTGCTGCTATCTGTTTTGTTTCCTTCCTTCCCGACATTTTGGATTCCAAAGCGGAGGGGAGAAACAGATACCTTCAGCAGTTATTAACAGTTGCAGAGAAGTTCAAAAGGAGTCCTTACAGGCAAGTAAAAAAACATTTTGCTTACATTTCATAGTTCATACTTTCACATCCCTCTATGACTCATGAGTTAATCTTTCAAATTCAACTTTTTTGGTTTATACTATTGATTTTGTAAATGCTTTACAAACATGTTTAAATCAAGATAAAAGGCAACATGCATTGTCAGTGTAAACTAGTTTTACACTGACGTTCAATGTGAATCGTGCATGTTGCAGTTATTTTTAAATTGCGGTTGCAAAGTGTACTTACATGGAAATATAATGGGTTCTCATTGGATATCAGTGTAAAACTATTTTGCACCAACAATGCATCTTCATCAAACTCTTAAACCAGTCTTTGTTGACGAATGCTTAATGGTTTTTTGTTTGAATTTGGGTCTTGAACAGCTATGTATGGGCAGCTGCCGGTAAGCAGCCAGACCTTGAGCAGAAAGTTGGTGTTGGTGGGTATGGTTATCCAGCATTAGTAGCCTTGAACGTTAAGAAAGGTGTTTATGCTCCTCTCAAGAGTGCTTTTGAACTCGACCAAATTATGTAAGTCTATTTTTCTAATTTTATGCTAAATAGTTGGCGCTTTACTGAAGCAAACAAGTACTTGAACTTTATTGATTTGTTTTCTTCAGAGAATTTGTGAAAGAAGCTGGACGTGGAGGCAAAGGGAACTTGCCCCTAGGTGACACTCCTCCCACCATTGTAAAGACAGAACCATGGGATGGAAAAGATGGAGAAATAATTGAGGAAGATGAATTTTCTCTTGAAGAACTCATGGGAGAAGATGCCTCAACCAAAGATGAACTATAA

Protein sequence

>MS.gene29768.t1

MAKLSFIAVTIFLFNNLILSHALYGSSSPVLQLTPNNFKSKVLNSNGVVLVEFFAPWCGHCKALTPIWEKAATVLKGVVTVAALDADAHQSLAQEYGIRGFPTIKVFAPGKPPVDYQGARDVKPIAEFALQQVKALLKERLNGKATGGSNEKKETTASSSVELNSSNFDELVIKSKELWIVEFFAPWCGHCKKLAPEWKRASNNLKGKVKLGHVDCDADKSLMSRFNVQGFPTILVFGADKDTPIPYEGARTASAIESFALEQLETNVAPPEVTELYSPDVLEEKCGSAAICFVSFLPDILDSKAEGRNRYLQQLLTVAEKFKRSPYSYVWAAAGKQPDLEQKVGVGGYGYPALVALNVKKGVYAPLKSAFELDQIIEFVKEAGRGGKGNLPLGDTPPTIVKTEPWDGKDGEIIEEDEFSLEELMGEDASTKDEL