Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29768.t1 | XP_003616851.1 | 99.1 | 435 | 4 | 0 | 1 | 435 | 1 | 435 | 7.10E-249 | 869.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29768.t1 | Q67UF5 | 79.3 | 420 | 80 | 2 | 22 | 435 | 23 | 441 | 6.4e-198 | 691.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29768.t1 | G7KH66 | 99.1 | 435 | 4 | 0 | 1 | 435 | 1 | 435 | 5.1e-249 | 869.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29768.t1 | MTR_5g084930 | 99.080 | 435 | 4 | 0 | 1 | 435 | 1 | 435 | 0.0 | 884 |
MS.gene29768.t1 | MTR_2g021750 | 84.962 | 133 | 20 | 0 | 1 | 133 | 1 | 133 | 5.17e-73 | 233 |
MS.gene29768.t1 | MTR_2g021750 | 44.037 | 109 | 60 | 1 | 156 | 264 | 26 | 133 | 2.06e-23 | 100 |
MS.gene29768.t1 | MTR_7g112040 | 33.824 | 272 | 154 | 8 | 1 | 267 | 3 | 253 | 3.36e-40 | 147 |
MS.gene29768.t1 | MTR_7g112040 | 42.308 | 130 | 67 | 4 | 157 | 280 | 23 | 150 | 2.80e-21 | 95.1 |
MS.gene29768.t1 | MTR_1g087520 | 35.000 | 240 | 136 | 5 | 33 | 267 | 34 | 258 | 1.11e-39 | 146 |
MS.gene29768.t1 | MTR_1g087520 | 40.541 | 148 | 70 | 4 | 28 | 172 | 147 | 279 | 1.83e-24 | 104 |
MS.gene29768.t1 | MTR_1g087520 | 40.625 | 128 | 68 | 4 | 163 | 284 | 34 | 159 | 2.81e-19 | 89.4 |
MS.gene29768.t1 | MTR_1g096790 | 40.351 | 114 | 59 | 4 | 30 | 136 | 28 | 139 | 7.13e-17 | 82.8 |
MS.gene29768.t1 | MTR_1g096790 | 29.075 | 227 | 129 | 7 | 163 | 382 | 31 | 232 | 3.98e-15 | 77.4 |
MS.gene29768.t1 | MTR_3g088220 | 34.884 | 172 | 93 | 7 | 163 | 329 | 38 | 195 | 1.47e-16 | 82.0 |
MS.gene29768.t1 | MTR_3g088220 | 41.284 | 109 | 57 | 4 | 30 | 132 | 35 | 142 | 1.58e-16 | 82.0 |
MS.gene29768.t1 | MTR_3g088220 | 33.333 | 105 | 68 | 1 | 26 | 128 | 375 | 479 | 1.02e-11 | 67.0 |
MS.gene29768.t1 | MTR_2g094180 | 41.600 | 125 | 65 | 4 | 135 | 256 | 55 | 174 | 1.69e-14 | 75.9 |
MS.gene29768.t1 | MTR_2g094180 | 51.220 | 82 | 38 | 2 | 30 | 110 | 80 | 160 | 3.76e-13 | 71.6 |
MS.gene29768.t1 | MTR_2g094180 | 27.184 | 206 | 132 | 6 | 64 | 259 | 322 | 519 | 1.42e-11 | 66.6 |
MS.gene29768.t1 | MTR_2g094180 | 32.609 | 138 | 87 | 3 | 36 | 169 | 424 | 559 | 1.74e-11 | 66.6 |
MS.gene29768.t1 | MTR_8g059015 | 41.463 | 82 | 48 | 0 | 30 | 111 | 73 | 154 | 2.97e-14 | 71.2 |
MS.gene29768.t1 | MTR_8g059015 | 25.654 | 191 | 122 | 6 | 72 | 259 | 2 | 175 | 8.31e-13 | 67.0 |
MS.gene29768.t1 | MTR_2g079420 | 26.846 | 149 | 99 | 2 | 107 | 245 | 9 | 157 | 8.55e-14 | 69.7 |
MS.gene29768.t1 | MTR_2g079420 | 34.653 | 101 | 66 | 0 | 11 | 111 | 51 | 151 | 3.39e-13 | 67.8 |
MS.gene29768.t1 | MTR_2g093680 | 28.814 | 118 | 81 | 2 | 17 | 132 | 29 | 145 | 1.20e-13 | 68.9 |
MS.gene29768.t1 | MTR_2g093680 | 28.333 | 120 | 83 | 2 | 156 | 273 | 37 | 155 | 5.08e-12 | 64.3 |
MS.gene29768.t1 | MTR_1g114290 | 34.483 | 116 | 72 | 2 | 24 | 138 | 64 | 176 | 1.52e-13 | 69.3 |
MS.gene29768.t1 | MTR_1g114290 | 30.631 | 111 | 73 | 1 | 153 | 263 | 63 | 169 | 7.57e-13 | 67.0 |
MS.gene29768.t1 | MTR_1g098660 | 32.558 | 86 | 58 | 0 | 34 | 119 | 66 | 151 | 6.61e-13 | 67.0 |
MS.gene29768.t1 | MTR_1g098660 | 29.808 | 104 | 66 | 3 | 166 | 268 | 68 | 165 | 2.62e-11 | 62.4 |
MS.gene29768.t1 | MTR_2g079340 | 41.975 | 81 | 47 | 0 | 31 | 111 | 37 | 117 | 9.14e-13 | 66.2 |
MS.gene29768.t1 | MTR_2g079340 | 36.620 | 71 | 45 | 0 | 167 | 237 | 43 | 113 | 3.28e-11 | 62.0 |
MS.gene29768.t1 | MTR_4g059450 | 48.421 | 95 | 40 | 5 | 30 | 120 | 102 | 191 | 1.54e-12 | 69.7 |
MS.gene29768.t1 | MTR_2g079400 | 37.234 | 94 | 59 | 0 | 18 | 111 | 22 | 115 | 7.60e-12 | 63.2 |
MS.gene29768.t1 | MTR_3g089065 | 35.632 | 87 | 56 | 0 | 33 | 119 | 73 | 159 | 9.32e-12 | 63.9 |
MS.gene29768.t1 | MTR_4g080800 | 32.967 | 91 | 52 | 2 | 160 | 242 | 143 | 232 | 2.20e-11 | 65.9 |
MS.gene29768.t1 | MTR_4g085880 | 36.905 | 84 | 50 | 1 | 31 | 111 | 63 | 146 | 5.86e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29768.t1 | AT1G04980 | 72.748 | 444 | 111 | 4 | 1 | 435 | 5 | 447 | 0.0 | 680 |
MS.gene29768.t1 | AT2G32920 | 73.709 | 426 | 107 | 3 | 14 | 435 | 16 | 440 | 0.0 | 656 |
MS.gene29768.t1 | AT2G47470 | 36.250 | 240 | 133 | 5 | 33 | 267 | 28 | 252 | 4.17e-44 | 155 |
MS.gene29768.t1 | AT2G47470 | 54.369 | 103 | 42 | 3 | 30 | 128 | 143 | 244 | 1.38e-27 | 110 |
MS.gene29768.t1 | AT2G47470 | 39.370 | 127 | 71 | 3 | 163 | 284 | 28 | 153 | 1.13e-19 | 89.0 |
MS.gene29768.t1 | AT2G47470 | 36.250 | 240 | 133 | 5 | 33 | 267 | 28 | 252 | 9.12e-44 | 156 |
MS.gene29768.t1 | AT2G47470 | 54.369 | 103 | 42 | 3 | 30 | 128 | 143 | 244 | 1.34e-27 | 112 |
MS.gene29768.t1 | AT2G47470 | 39.370 | 127 | 71 | 3 | 163 | 284 | 28 | 153 | 2.73e-19 | 89.0 |
MS.gene29768.t1 | AT2G47470 | 36.250 | 240 | 133 | 5 | 33 | 267 | 28 | 252 | 9.89e-44 | 156 |
MS.gene29768.t1 | AT2G47470 | 54.369 | 103 | 42 | 3 | 30 | 128 | 143 | 244 | 1.57e-27 | 112 |
MS.gene29768.t1 | AT2G47470 | 39.370 | 127 | 71 | 3 | 163 | 284 | 28 | 153 | 2.59e-19 | 89.0 |
MS.gene29768.t1 | AT2G47470 | 36.250 | 240 | 133 | 5 | 33 | 267 | 28 | 252 | 1.44e-43 | 156 |
MS.gene29768.t1 | AT2G47470 | 54.369 | 103 | 42 | 3 | 30 | 128 | 143 | 244 | 1.68e-27 | 112 |
MS.gene29768.t1 | AT2G47470 | 39.370 | 127 | 71 | 3 | 163 | 284 | 28 | 153 | 2.96e-19 | 89.4 |
MS.gene29768.t1 | AT3G54960 | 46.154 | 91 | 48 | 1 | 30 | 120 | 101 | 190 | 1.06e-18 | 89.0 |
MS.gene29768.t1 | AT3G54960 | 28.182 | 220 | 136 | 6 | 163 | 380 | 104 | 303 | 2.71e-15 | 78.2 |
MS.gene29768.t1 | AT3G54960 | 46.154 | 91 | 48 | 1 | 30 | 120 | 101 | 190 | 1.48e-18 | 88.6 |
MS.gene29768.t1 | AT3G54960 | 27.854 | 219 | 138 | 6 | 163 | 380 | 104 | 303 | 3.64e-15 | 78.2 |
MS.gene29768.t1 | AT3G54960 | 37.363 | 91 | 49 | 2 | 36 | 126 | 445 | 527 | 3.35e-11 | 65.9 |
MS.gene29768.t1 | AT5G60640 | 36.493 | 211 | 111 | 10 | 30 | 226 | 105 | 306 | 2.29e-17 | 84.7 |
MS.gene29768.t1 | AT5G60640 | 42.424 | 99 | 49 | 4 | 161 | 256 | 106 | 199 | 4.35e-15 | 77.8 |
MS.gene29768.t1 | AT5G60640 | 26.733 | 202 | 130 | 5 | 68 | 259 | 351 | 544 | 5.27e-12 | 68.2 |
MS.gene29768.t1 | AT5G60640 | 36.493 | 211 | 111 | 10 | 30 | 226 | 105 | 306 | 2.92e-17 | 84.3 |
MS.gene29768.t1 | AT5G60640 | 42.424 | 99 | 49 | 4 | 161 | 256 | 106 | 199 | 5.82e-15 | 77.4 |
MS.gene29768.t1 | AT5G60640 | 26.633 | 199 | 129 | 5 | 62 | 252 | 346 | 535 | 2.63e-11 | 65.9 |
MS.gene29768.t1 | AT5G60640 | 36.493 | 211 | 111 | 10 | 30 | 226 | 105 | 306 | 3.29e-17 | 84.3 |
MS.gene29768.t1 | AT5G60640 | 42.424 | 99 | 49 | 4 | 161 | 256 | 106 | 199 | 3.83e-15 | 77.8 |
MS.gene29768.t1 | AT5G60640 | 34.737 | 95 | 60 | 1 | 167 | 259 | 386 | 480 | 3.86e-11 | 65.5 |
MS.gene29768.t1 | AT1G21750 | 40.367 | 109 | 58 | 4 | 30 | 132 | 32 | 139 | 4.01e-17 | 84.0 |
MS.gene29768.t1 | AT1G21750 | 35.849 | 106 | 62 | 3 | 163 | 263 | 35 | 139 | 9.65e-15 | 76.6 |
MS.gene29768.t1 | AT1G21750 | 37.113 | 97 | 59 | 1 | 26 | 120 | 372 | 468 | 1.10e-12 | 70.1 |
MS.gene29768.t1 | AT1G21750 | 40.367 | 109 | 58 | 4 | 30 | 132 | 32 | 139 | 4.11e-17 | 84.0 |
MS.gene29768.t1 | AT1G21750 | 29.518 | 166 | 99 | 5 | 163 | 323 | 35 | 187 | 1.04e-14 | 76.6 |
MS.gene29768.t1 | AT1G21750 | 37.113 | 97 | 59 | 1 | 26 | 120 | 372 | 468 | 1.01e-12 | 70.1 |
MS.gene29768.t1 | AT1G21750 | 35.577 | 104 | 64 | 2 | 165 | 266 | 381 | 483 | 2.99e-11 | 65.9 |
MS.gene29768.t1 | AT1G77510 | 28.421 | 190 | 117 | 6 | 152 | 336 | 23 | 198 | 1.43e-16 | 82.0 |
MS.gene29768.t1 | AT1G77510 | 39.450 | 109 | 59 | 4 | 30 | 132 | 31 | 138 | 3.13e-16 | 81.3 |
MS.gene29768.t1 | AT1G77510 | 27.165 | 254 | 157 | 11 | 14 | 252 | 227 | 467 | 5.52e-11 | 64.7 |
MS.gene29768.t1 | AT1G07960 | 30.000 | 120 | 81 | 2 | 28 | 144 | 25 | 144 | 1.63e-14 | 70.9 |
MS.gene29768.t1 | AT1G07960 | 25.439 | 114 | 82 | 2 | 154 | 265 | 21 | 133 | 9.36e-14 | 68.9 |
MS.gene29768.t1 | AT1G07960 | 30.000 | 120 | 81 | 2 | 28 | 144 | 25 | 144 | 1.63e-14 | 70.9 |
MS.gene29768.t1 | AT1G07960 | 25.439 | 114 | 82 | 2 | 154 | 265 | 21 | 133 | 9.36e-14 | 68.9 |
MS.gene29768.t1 | AT1G07960 | 30.000 | 120 | 81 | 2 | 28 | 144 | 25 | 144 | 1.63e-14 | 70.9 |
MS.gene29768.t1 | AT1G07960 | 25.439 | 114 | 82 | 2 | 154 | 265 | 21 | 133 | 9.36e-14 | 68.9 |
MS.gene29768.t1 | AT1G07960 | 30.000 | 120 | 81 | 2 | 28 | 144 | 25 | 144 | 1.63e-14 | 70.9 |
MS.gene29768.t1 | AT1G07960 | 25.439 | 114 | 82 | 2 | 154 | 265 | 21 | 133 | 9.36e-14 | 68.9 |
MS.gene29768.t1 | AT1G35620 | 40.426 | 94 | 51 | 3 | 30 | 120 | 34 | 125 | 2.16e-14 | 75.1 |
MS.gene29768.t1 | AT1G35620 | 27.966 | 236 | 138 | 10 | 155 | 383 | 29 | 239 | 8.62e-14 | 73.6 |
MS.gene29768.t1 | AT1G43560 | 37.209 | 86 | 54 | 0 | 34 | 119 | 64 | 149 | 1.45e-13 | 68.9 |
MS.gene29768.t1 | AT1G76760 | 31.429 | 105 | 68 | 1 | 34 | 138 | 69 | 169 | 1.91e-13 | 68.6 |
MS.gene29768.t1 | AT4G03520 | 36.082 | 97 | 59 | 2 | 151 | 245 | 74 | 169 | 3.50e-12 | 65.5 |
MS.gene29768.t1 | AT1G50320 | 30.000 | 150 | 89 | 4 | 121 | 263 | 30 | 170 | 3.75e-12 | 65.1 |
MS.gene29768.t1 | AT3G15360 | 36.667 | 90 | 57 | 0 | 30 | 119 | 88 | 177 | 4.41e-12 | 65.1 |
MS.gene29768.t1 | AT4G27080 | 32.000 | 125 | 67 | 4 | 126 | 242 | 118 | 232 | 2.30e-11 | 65.9 |
MS.gene29768.t1 | AT4G27080 | 32.000 | 125 | 67 | 4 | 126 | 242 | 170 | 284 | 2.68e-11 | 65.9 |
MS.gene29768.t1 | AT1G03680 | 26.923 | 156 | 94 | 4 | 110 | 245 | 8 | 163 | 2.93e-11 | 62.4 |
MS.gene29768.t1 | AT3G20560 | 34.000 | 100 | 57 | 2 | 151 | 242 | 134 | 232 | 9.62e-11 | 63.9 |
Find 108 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCCAACAATCTTGGTATT+TGG | 0.173156 | 5.3:-68664619 | MS.gene29768:CDS |
TTCCTTCCTTCCCGACATTT+TGG | 0.184244 | 5.3:-68664339 | MS.gene29768:CDS |
CTTAATTCCCTTCAGGAATA+TGG | 0.210374 | 5.3:-68665824 | MS.gene29768:intron |
GAAGGCAGCTACTGTATTAA+AGG | 0.276220 | 5.3:-68666773 | MS.gene29768:CDS |
CTCTAGTAACTTCGATGAAT+TGG | 0.285509 | 5.3:-68665262 | MS.gene29768:CDS |
CTTCAGGAATATGGTATTAG+AGG | 0.289766 | 5.3:-68665815 | MS.gene29768:intron |
CTATATAGCTCTGTCACTTC+TGG | 0.297987 | 5.3:+68664499 | None:intergenic |
CGCAGAATTTGCACTTCAAC+AGG | 0.299216 | 5.3:-68665717 | MS.gene29768:intron |
GTTTCCTTATAGTTCATCTT+TGG | 0.305542 | 5.3:+68663454 | None:intergenic |
TTTGAAAGGGAAGGTTAAAC+TGG | 0.309941 | 5.3:-68665029 | MS.gene29768:CDS |
GTAAGGCTCTGACTCCTATA+TGG | 0.316417 | 5.3:-68666798 | MS.gene29768:CDS |
TGCGATTGGTTTAACATCTC+TGG | 0.351595 | 5.3:+68665736 | None:intergenic |
CTCAAGGTCTGGCTGCTTAC+CGG | 0.356762 | 5.3:+68663834 | None:intergenic |
TAGAGGATTTCCAACTATAA+AGG | 0.370686 | 5.3:-68665798 | MS.gene29768:CDS |
AACACCTTTCTTAACGTTCA+AGG | 0.373568 | 5.3:+68663768 | None:intergenic |
TCTGTTTCTCCCCTCCGCTT+TGG | 0.375402 | 5.3:+68664313 | None:intergenic |
TCAACCAAAGATGAACTATA+AGG | 0.387123 | 5.3:-68663458 | None:intergenic |
AAAGTTGGTGTTGGTGGGTA+TGG | 0.390826 | 5.3:-68663808 | MS.gene29768:CDS |
GGGTCTTGAACAGCTATGTA+TGG | 0.397598 | 5.3:-68663864 | MS.gene29768:intron |
CTAGCACCCTCGTAAGGAAT+TGG | 0.409040 | 5.3:+68664580 | None:intergenic |
TCAAGGATTCCCAACAATCT+TGG | 0.416145 | 5.3:-68664626 | MS.gene29768:CDS |
TCCATGGTGCGGGCACTGTA+AGG | 0.416505 | 5.3:-68666815 | MS.gene29768:CDS |
ACCTTGGACTTGAAGTTGTT+AGG | 0.419712 | 5.3:+68668246 | None:intergenic |
TTGTTGAATTCTTTGCTCCA+TGG | 0.424265 | 5.3:-68666831 | MS.gene29768:CDS |
TGCTGATGCTCACCAATCTC+TGG | 0.427343 | 5.3:-68666725 | MS.gene29768:CDS |
AGTTCAAAAGGAGTCCTTAC+AGG | 0.430959 | 5.3:-68664259 | MS.gene29768:intron |
CTGGCTCCTTGGTAATCAAC+TGG | 0.433932 | 5.3:+68665755 | None:intergenic |
AGGAATTGGAGTATCTTTAT+CGG | 0.435399 | 5.3:+68664594 | None:intergenic |
AGAAACCACCGCTTCTTCTT+CGG | 0.438238 | 5.3:-68665295 | MS.gene29768:CDS |
AGAGAATTTGTGAAAGAAGC+TGG | 0.439854 | 5.3:-68663617 | MS.gene29768:CDS |
GTGTTGTCTATAGGATGTTT+TGG | 0.440808 | 5.3:-68664396 | MS.gene29768:intron |
TTATCAAAAGCAAAGAACTT+TGG | 0.443575 | 5.3:-68665239 | MS.gene29768:CDS |
TTTGTCAGTCTCTAATGAGC+AGG | 0.447245 | 5.3:-68664657 | MS.gene29768:intron |
GGTGCAAACACCTTTATAGT+TGG | 0.448420 | 5.3:+68665788 | None:intergenic |
CCAACTTTCTGCTCAAGGTC+TGG | 0.450805 | 5.3:+68663823 | None:intergenic |
AACCGTAGAGAGCGTGAGAA+AGG | 0.451953 | 5.3:+68668295 | None:intergenic |
TGCTCACCAATCTCTGGCTC+AGG | 0.454025 | 5.3:-68666719 | MS.gene29768:intron |
GTTTAACATCTCTGGCTCCT+TGG | 0.454708 | 5.3:+68665744 | None:intergenic |
ATGAGCAGGTTCAATGTTCA+AGG | 0.456443 | 5.3:-68664643 | MS.gene29768:CDS |
AATTCTTTGCTCCATGGTGC+GGG | 0.458259 | 5.3:-68666825 | MS.gene29768:CDS |
ATCATTCGCACTAGAGCAGC+TGG | 0.462465 | 5.3:-68664539 | MS.gene29768:CDS |
TTATAGTTCATCTTTGGTTG+AGG | 0.465932 | 5.3:+68663460 | None:intergenic |
TGTCAGGTTCTGAATTCAAA+TGG | 0.470995 | 5.3:-68666862 | MS.gene29768:intron |
CTCCAAATACCAAGATTGTT+GGG | 0.472339 | 5.3:+68664617 | None:intergenic |
GGAAAACCTGAGCCAGAGAT+TGG | 0.473756 | 5.3:+68666713 | None:intergenic |
CGGTTAAATGGAAAAGCAAC+AGG | 0.474554 | 5.3:-68665336 | MS.gene29768:CDS |
GCTCCAAATACCAAGATTGT+TGG | 0.479181 | 5.3:+68664616 | None:intergenic |
AGTGAGTTGAAGAACGGGTG+AGG | 0.481557 | 5.3:+68668269 | None:intergenic |
ACGTTCAAGGCTACTAATGC+TGG | 0.481617 | 5.3:+68663781 | None:intergenic |
ATCCTTTCTCACGCTCTCTA+CGG | 0.482498 | 5.3:-68668297 | MS.gene29768:CDS |
CAGTTGCAGAGAAGTTCAAA+AGG | 0.484219 | 5.3:-68664271 | MS.gene29768:CDS |
GGTTCTGTCTTTACAATGGT+GGG | 0.490337 | 5.3:+68663554 | None:intergenic |
ACTATAAAGGTGTTTGCACC+TGG | 0.493971 | 5.3:-68665785 | MS.gene29768:CDS |
TTAGGAGTGAGTTGAAGAAC+GGG | 0.495568 | 5.3:+68668264 | None:intergenic |
GAACCATGGGATGGAAAAGA+TGG | 0.495841 | 5.3:-68663536 | MS.gene29768:CDS |
TGGTTCTGTCTTTACAATGG+TGG | 0.496152 | 5.3:+68663553 | None:intergenic |
AGAGCATCTAATAATTTGAA+AGG | 0.498898 | 5.3:-68665043 | MS.gene29768:CDS |
GTTAGGAGTGAGTTGAAGAA+CGG | 0.501891 | 5.3:+68668263 | None:intergenic |
CGCTTTGGAATCCAAAATGT+CGG | 0.502392 | 5.3:+68664328 | None:intergenic |
GAAGCTGGACGTGGAGGCAA+AGG | 0.515570 | 5.3:-68663602 | MS.gene29768:CDS |
AAGGCAGCTACTGTATTAAA+GGG | 0.517489 | 5.3:-68666772 | MS.gene29768:CDS |
GTAGCTGCCTTCTCCCATAT+AGG | 0.519121 | 5.3:+68666784 | None:intergenic |
TGGTGGGAGGAGTGTCACCT+AGG | 0.522614 | 5.3:+68663570 | None:intergenic |
GCTTTGGAATCCAAAATGTC+GGG | 0.532296 | 5.3:+68664329 | None:intergenic |
TAAGGCTCTGACTCCTATAT+GGG | 0.533987 | 5.3:-68666797 | MS.gene29768:CDS |
CCAGACCTTGAGCAGAAAGT+TGG | 0.535182 | 5.3:-68663823 | MS.gene29768:CDS |
GGTGGGAGGAGTGTCACCTA+GGG | 0.535529 | 5.3:+68663571 | None:intergenic |
GAGCATCTAATAATTTGAAA+GGG | 0.535885 | 5.3:-68665042 | MS.gene29768:CDS |
ATCTAATAATTTGAAAGGGA+AGG | 0.536560 | 5.3:-68665038 | MS.gene29768:CDS |
GAATTCTTTGCTCCATGGTG+CGG | 0.548779 | 5.3:-68666826 | MS.gene29768:CDS |
GAGCAGAAAGTTGGTGTTGG+TGG | 0.549595 | 5.3:-68663814 | MS.gene29768:CDS |
TCCTAACAACTTCAAGTCCA+AGG | 0.552476 | 5.3:-68668247 | MS.gene29768:intron |
ATCCAAAATGTCGGGAAGGA+AGG | 0.552840 | 5.3:+68664337 | None:intergenic |
CCATGGTTCTGTCTTTACAA+TGG | 0.553296 | 5.3:+68663550 | None:intergenic |
GTAGCCTTGAACGTTAAGAA+AGG | 0.556407 | 5.3:-68663772 | MS.gene29768:CDS |
CTCTAGTGCGAATGATTCGA+TGG | 0.558140 | 5.3:+68664546 | None:intergenic |
GGTCTTGAACAGCTATGTAT+GGG | 0.559621 | 5.3:-68663863 | MS.gene29768:intron |
AAAAGATGGAGAAATAATTG+AGG | 0.562273 | 5.3:-68663522 | MS.gene29768:CDS |
TGAAGTGCAAATTCTGCGAT+TGG | 0.562719 | 5.3:+68665722 | None:intergenic |
GCCTTACAGTGCCCGCACCA+TGG | 0.567839 | 5.3:+68666814 | None:intergenic |
CAACTGTTAATAACTGCTGA+AGG | 0.571823 | 5.3:+68664288 | None:intergenic |
GCAGTTCTAGCACCCTCGTA+AGG | 0.576634 | 5.3:+68664574 | None:intergenic |
CAACACCAACTTTCTGCTCA+AGG | 0.577087 | 5.3:+68663818 | None:intergenic |
GCTCCTTGGTAATCAACTGG+TGG | 0.580906 | 5.3:+68665758 | None:intergenic |
AGCAGAAAGTTGGTGTTGGT+GGG | 0.581032 | 5.3:-68663813 | MS.gene29768:CDS |
AAGCTGGACGTGGAGGCAAA+GGG | 0.583780 | 5.3:-68663601 | MS.gene29768:CDS |
TTTGTGAAAGAAGCTGGACG+TGG | 0.587104 | 5.3:-68663611 | MS.gene29768:CDS |
AGCTATGTATGGGCAGCTGC+CGG | 0.590014 | 5.3:-68663853 | MS.gene29768:CDS |
TCTGACTCCTATATGGGAGA+AGG | 0.598675 | 5.3:-68666791 | MS.gene29768:CDS |
TCTGTCTTTACAATGGTGGG+AGG | 0.605063 | 5.3:+68663557 | None:intergenic |
TAGTTCTACCGAAGAAGAAG+CGG | 0.621191 | 5.3:+68665287 | None:intergenic |
AGTTCAAAAGCACTCTTGAG+AGG | 0.621890 | 5.3:+68663739 | None:intergenic |
CATTGTAAAGACAGAACCAT+GGG | 0.623172 | 5.3:-68663549 | MS.gene29768:CDS |
TTCTACCGAAGAAGAAGCGG+TGG | 0.624355 | 5.3:+68665290 | None:intergenic |
GGCAAAGGGAACTTGCCCCT+AGG | 0.627464 | 5.3:-68663587 | MS.gene29768:CDS |
CTTGAGCAGAAAGTTGGTGT+TGG | 0.628583 | 5.3:-68663817 | MS.gene29768:CDS |
TTGAAAGGGAAGGTTAAACT+GGG | 0.631529 | 5.3:-68665028 | MS.gene29768:CDS |
TGGAATCCAAAATGTCGGGA+AGG | 0.635224 | 5.3:+68664333 | None:intergenic |
GATACTCCAATTCCTTACGA+GGG | 0.636183 | 5.3:-68664586 | MS.gene29768:CDS |
TGTTGACTGTGATGCTGACA+AGG | 0.636371 | 5.3:-68665002 | MS.gene29768:intron |
GTAAAGACAGAACCATGGGA+TGG | 0.640244 | 5.3:-68663545 | MS.gene29768:CDS |
TATAGCTCTGTCACTTCTGG+AGG | 0.640322 | 5.3:+68664502 | None:intergenic |
GTGAAAGAAGCTGGACGTGG+AGG | 0.650513 | 5.3:-68663608 | MS.gene29768:CDS |
TTAAATGGAAAAGCAACAGG+TGG | 0.661631 | 5.3:-68665333 | MS.gene29768:CDS |
AGATACTCCAATTCCTTACG+AGG | 0.665654 | 5.3:-68664587 | MS.gene29768:CDS |
GTGGGAGGAGTGTCACCTAG+GGG | 0.673404 | 5.3:+68663572 | None:intergenic |
CCATTGTAAAGACAGAACCA+TGG | 0.708421 | 5.3:-68663550 | MS.gene29768:CDS |
AAACCACCAGTTGATTACCA+AGG | 0.716041 | 5.3:-68665761 | MS.gene29768:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTAATAAATAATTGAAATAT+AGG | + | chr5.3:68666628-68666647 | None:intergenic | 10.0% |
!! | TATAAATAAATTGAAAAGTA+AGG | + | chr5.3:68667063-68667082 | None:intergenic | 10.0% |
!! | AAAAATAGACTTACATAATT+TGG | + | chr5.3:68668098-68668117 | None:intergenic | 15.0% |
!! | AAATATTTGATTGAAACTTT+AGG | + | chr5.3:68666157-68666176 | None:intergenic | 15.0% |
!! | AATATTTGATTGAAACTTTA+GGG | + | chr5.3:68666156-68666175 | None:intergenic | 15.0% |
!! | AATTTGATTAATAACTTGAA+AGG | - | chr5.3:68666290-68666309 | MS.gene29768:intron | 15.0% |
!! | ATCATCTGAAAAAAATTAAT+AGG | - | chr5.3:68663899-68663918 | MS.gene29768:intron | 15.0% |
!! | ATTTGATTAATAACTTGAAA+GGG | - | chr5.3:68666291-68666310 | MS.gene29768:intron | 15.0% |
!! | TGAAAAATTACTACAAATAA+AGG | - | chr5.3:68666265-68666284 | MS.gene29768:intron | 15.0% |
!! | TTATACTATTGTATTATGAT+TGG | - | chr5.3:68664799-68664818 | MS.gene29768:intron | 15.0% |
!!! | AAAAATTATTCGTATTTTCT+TGG | + | chr5.3:68664855-68664874 | None:intergenic | 15.0% |
!!! | AAAATTATTCGTATTTTCTT+GGG | + | chr5.3:68664854-68664873 | None:intergenic | 15.0% |
!!! | ATAAAATTGTTTGATGTTTT+AGG | - | chr5.3:68665636-68665655 | MS.gene29768:intron | 15.0% |
!!! | TAAAATTGTTTGATGTTTTA+GGG | - | chr5.3:68665637-68665656 | MS.gene29768:intron | 15.0% |
!!! | TTTCTTTTTTTATTTCTCAA+AGG | - | chr5.3:68666706-68666725 | MS.gene29768:intron | 15.0% |
!! | AAAAAACAAGCTAAAAAAGT+GGG | + | chr5.3:68663627-68663646 | None:intergenic | 20.0% |
!! | AAATTTAAATACTGAATCTG+AGG | + | chr5.3:68665139-68665158 | None:intergenic | 20.0% |
!! | AAGGAAAAACTTTACATATA+AGG | + | chr5.3:68665701-68665720 | None:intergenic | 20.0% |
!! | ACACATATTCATATTCATAA+AGG | + | chr5.3:68665220-68665239 | None:intergenic | 20.0% |
!! | ATTGAAAAAAGATTAAACCT+TGG | + | chr5.3:68663581-68663600 | None:intergenic | 20.0% |
!! | CACTAATGTAATTTATTCTT+TGG | + | chr5.3:68665761-68665780 | None:intergenic | 20.0% |
!! | CATGTTTAAATCAAGATAAA+AGG | - | chr5.3:68667698-68667717 | MS.gene29768:intron | 20.0% |
!! | TACTAACTAAACTCAAATTA+AGG | - | chr5.3:68664528-68664547 | MS.gene29768:CDS | 20.0% |
!! | TACTTACATGGAAATATAAT+GGG | - | chr5.3:68667813-68667832 | MS.gene29768:intron | 20.0% |
!! | TCAGAATAATATAAACTGAA+AGG | + | chr5.3:68667119-68667138 | None:intergenic | 20.0% |
!! | TTATAGCTTATATGAAAAAC+AGG | - | chr5.3:68665448-68665467 | MS.gene29768:intron | 20.0% |
!! | TTTAACAAACTGTTATTGTT+CGG | - | chr5.3:68666915-68666934 | MS.gene29768:intron | 20.0% |
!!! | AAATTATTCGTATTTTCTTG+GGG | + | chr5.3:68664853-68664872 | None:intergenic | 20.0% |
!!! | AATGGTTTTTTGTTTGAATT+TGG | - | chr5.3:68667923-68667942 | MS.gene29768:intron | 20.0% |
!!! | ATATTTAAAATAGTTACAGG+AGG | + | chr5.3:68665571-68665590 | None:intergenic | 20.0% |
!!! | ATGGTTTTTTGTTTGAATTT+GGG | - | chr5.3:68667924-68667943 | MS.gene29768:intron | 20.0% |
!!! | CACATATTTAAAATAGTTAC+AGG | + | chr5.3:68665574-68665593 | None:intergenic | 20.0% |
!!! | CTAATTTTATGCTAAATAGT+TGG | - | chr5.3:68668118-68668137 | MS.gene29768:intron | 20.0% |
!!! | CTGTAACTATTTTAAATATG+TGG | - | chr5.3:68665572-68665591 | MS.gene29768:intron | 20.0% |
!!! | TCTTTCAAATTCAACTTTTT+TGG | - | chr5.3:68667642-68667661 | MS.gene29768:intron | 20.0% |
!!! | TTGCAGTTATTTTTAAATTG+CGG | - | chr5.3:68667780-68667799 | MS.gene29768:intron | 20.0% |
!!! | TTTAGCTTGTTTTTTCAAAT+GGG | - | chr5.3:68663632-68663651 | MS.gene29768:intron | 20.0% |
!!! | TTTTAGCTTGTTTTTTCAAA+TGG | - | chr5.3:68663631-68663650 | MS.gene29768:intron | 20.0% |
! | AAAAGATGGAGAAATAATTG+AGG | - | chr5.3:68668286-68668305 | MS.gene29768:CDS | 25.0% |
! | AATATCAATGTATTGGGATT+AGG | - | chr5.3:68666366-68666385 | MS.gene29768:intron | 25.0% |
! | AGTGAGAATATCAATGTATT+GGG | - | chr5.3:68666360-68666379 | MS.gene29768:intron | 25.0% |
! | ATATCAATGTATTGGGATTA+GGG | - | chr5.3:68666367-68666386 | MS.gene29768:intron | 25.0% |
! | ATCTAATAATTTGAAAGGGA+AGG | - | chr5.3:68666770-68666789 | MS.gene29768:CDS | 25.0% |
! | CAATAGTATAAAAGACTGTT+TGG | + | chr5.3:68664790-68664809 | None:intergenic | 25.0% |
! | GAAAAAACAAGCTAAAAAAG+TGG | + | chr5.3:68663628-68663647 | None:intergenic | 25.0% |
! | GAGCATCTAATAATTTGAAA+GGG | - | chr5.3:68666766-68666785 | MS.gene29768:CDS | 25.0% |
! | GTACTTACATGGAAATATAA+TGG | - | chr5.3:68667812-68667831 | MS.gene29768:intron | 25.0% |
! | TAGCACTAAAATTTAGTTGA+AGG | - | chr5.3:68664192-68664211 | MS.gene29768:intron | 25.0% |
! | TATAGTTTATTTGCATGTAC+AGG | - | chr5.3:68666429-68666448 | MS.gene29768:intron | 25.0% |
! | TCAGTTTATATTATTCTGAC+AGG | - | chr5.3:68667120-68667139 | MS.gene29768:intron | 25.0% |
! | TTATCAAAAGCAAAGAACTT+TGG | - | chr5.3:68666569-68666588 | MS.gene29768:intron | 25.0% |
! | TTTATGCTTGAAAACTATCT+GGG | - | chr5.3:68663684-68663703 | MS.gene29768:intron | 25.0% |
!! | AAGTGATTTTATGTTTGGAT+AGG | - | chr5.3:68664217-68664236 | MS.gene29768:intron | 25.0% |
!! | AGAGCATCTAATAATTTGAA+AGG | - | chr5.3:68666765-68666784 | MS.gene29768:CDS | 25.0% |
!! | AGGTAAAGTGATTTTATGTT+TGG | - | chr5.3:68664212-68664231 | MS.gene29768:intron | 25.0% |
!! | ATTAAGTTGTTAATCCCAAT+AGG | - | chr5.3:68665536-68665555 | MS.gene29768:intron | 25.0% |
!! | TAGTGTTACAATTTGGATTT+TGG | - | chr5.3:68666187-68666206 | MS.gene29768:intron | 25.0% |
!! | TTAAGTTGTTAATCCCAATA+GGG | - | chr5.3:68665537-68665556 | MS.gene29768:intron | 25.0% |
!! | TTTTATGCTTGAAAACTATC+TGG | - | chr5.3:68663683-68663702 | MS.gene29768:intron | 25.0% |
!!! | ATGGTTGATTTTATGATTCT+GGG | - | chr5.3:68663778-68663797 | MS.gene29768:CDS | 25.0% |
!!! | TATGGTTGATTTTATGATTC+TGG | - | chr5.3:68663777-68663796 | MS.gene29768:CDS | 25.0% |
!!! | TCAAGTAGAATCTATTTTGA+AGG | - | chr5.3:68664395-68664414 | MS.gene29768:intron | 25.0% |
!!! | TTTTTTATTTCTCAAAGGTG+TGG | - | chr5.3:68666711-68666730 | MS.gene29768:intron | 25.0% |
AAATAGATTCTACTTGAAGC+TGG | + | chr5.3:68664392-68664411 | None:intergenic | 30.0% | |
AACTCAAATTAAGGTCTGTT+TGG | - | chr5.3:68664537-68664556 | MS.gene29768:CDS | 30.0% | |
AATAAGGGGAAAACAACTTA+TGG | + | chr5.3:68664645-68664664 | None:intergenic | 30.0% | |
AATATTATGCCATAAAGCAC+CGG | - | chr5.3:68663968-68663987 | MS.gene29768:intron | 30.0% | |
AATTGTAACACTACACATGT+TGG | + | chr5.3:68666180-68666199 | None:intergenic | 30.0% | |
ACATGTGTAGTGTTACAATT+TGG | - | chr5.3:68666180-68666199 | MS.gene29768:intron | 30.0% | |
AGGAATGAAGAAATGAACAA+TGG | + | chr5.3:68665119-68665138 | None:intergenic | 30.0% | |
ATGCAGATAGCAAAAAATAG+CGG | + | chr5.3:68667020-68667039 | None:intergenic | 30.0% | |
ATTAACTCATGAGTCATAGA+GGG | + | chr5.3:68667623-68667642 | None:intergenic | 30.0% | |
CCTGTTATGATTTACATGTT+CGG | - | chr5.3:68665886-68665905 | MS.gene29768:intron | 30.0% | |
GAAATTGTAGCTTCTAATTC+TGG | + | chr5.3:68664291-68664310 | None:intergenic | 30.0% | |
GAACCTGACATTATTCAAAA+TGG | + | chr5.3:68664936-68664955 | None:intergenic | 30.0% | |
GAGTGAGAATATCAATGTAT+TGG | - | chr5.3:68666359-68666378 | MS.gene29768:intron | 30.0% | |
GATATACAATATGTAGAGCA+TGG | + | chr5.3:68665679-68665698 | None:intergenic | 30.0% | |
TACAATCAAGTAAAGTTTGC+AGG | + | chr5.3:68667354-68667373 | None:intergenic | 30.0% | |
TAGAGGATTTCCAACTATAA+AGG | - | chr5.3:68666010-68666029 | MS.gene29768:intron | 30.0% | |
TCGAATAAACCAATCTAAAC+AGG | + | chr5.3:68665329-68665348 | None:intergenic | 30.0% | |
TCTAATACCATATTCCTGAA+GGG | + | chr5.3:68665994-68666013 | None:intergenic | 30.0% | |
TGAAGAGCCTATGAAAATAA+GGG | + | chr5.3:68664660-68664679 | None:intergenic | 30.0% | |
TTATAGTTCATCTTTGGTTG+AGG | + | chr5.3:68668351-68668370 | None:intergenic | 30.0% | |
TTATTTGCATGTACAGGTAA+AGG | - | chr5.3:68666435-68666454 | MS.gene29768:intron | 30.0% | |
TTGAAGAGCCTATGAAAATA+AGG | + | chr5.3:68664661-68664680 | None:intergenic | 30.0% | |
! | AGATAGATGTCTTCTTTTTG+TGG | - | chr5.3:68666217-68666236 | MS.gene29768:intron | 30.0% |
! | AGGAATTGGAGTATCTTTAT+CGG | + | chr5.3:68667217-68667236 | None:intergenic | 30.0% |
! | ATTTGATTGAAACTTTAGGG+AGG | + | chr5.3:68666153-68666172 | None:intergenic | 30.0% |
! | ATTTTCTCTTGAAGAACTCA+TGG | - | chr5.3:68668316-68668335 | MS.gene29768:CDS | 30.0% |
! | GTAATGCATCAGGTTTTTAT+GGG | - | chr5.3:68664908-68664927 | MS.gene29768:intron | 30.0% |
! | TAAACATGAGTGTTGTCTAT+AGG | - | chr5.3:68667403-68667422 | MS.gene29768:intron | 30.0% |
! | TATCTAGTTTGTAATGCATC+AGG | - | chr5.3:68664898-68664917 | MS.gene29768:intron | 30.0% |
! | TGTAATGCATCAGGTTTTTA+TGG | - | chr5.3:68664907-68664926 | MS.gene29768:intron | 30.0% |
! | TGTTGATTAGTGTGTGAATA+TGG | - | chr5.3:68663759-68663778 | MS.gene29768:CDS | 30.0% |
! | TTGGTTGCTTTACATAGAAT+GGG | + | chr5.3:68665742-68665761 | None:intergenic | 30.0% |
! | TTTGATTGAAACTTTAGGGA+GGG | + | chr5.3:68666152-68666171 | None:intergenic | 30.0% |
! | TTTGGTTGCTTTACATAGAA+TGG | + | chr5.3:68665743-68665762 | None:intergenic | 30.0% |
! | TTTTATGATTCTGGGTTTTG+TGG | - | chr5.3:68663786-68663805 | MS.gene29768:CDS | 30.0% |
! | TTTTCTCTTGAAGAACTCAT+GGG | - | chr5.3:68668317-68668336 | MS.gene29768:CDS | 30.0% |
!! | GAAATATAATGGGTTCTCAT+TGG | - | chr5.3:68667823-68667842 | MS.gene29768:intron | 30.0% |
!!! | CAGGAGCTAATTTTTTACAA+TGG | + | chr5.3:68666737-68666756 | None:intergenic | 30.0% |
!!! | TGTTTTCCCCTTATTTTCAT+AGG | - | chr5.3:68664650-68664669 | MS.gene29768:CDS | 30.0% |
!!! | TGTTTTTTTACTTGCCTGTA+AGG | + | chr5.3:68667566-68667585 | None:intergenic | 30.0% |
AACACCTTTCTTAACGTTCA+AGG | + | chr5.3:68668043-68668062 | None:intergenic | 35.0% | |
AAGGCAGCTACTGTATTAAA+GGG | - | chr5.3:68665036-68665055 | MS.gene29768:CDS | 35.0% | |
AAGTACCTGTTAGACAGTTA+GGG | - | chr5.3:68665364-68665383 | MS.gene29768:intron | 35.0% | |
AAGTAGATTCTACTTGAAGC+TGG | + | chr5.3:68664313-68664332 | None:intergenic | 35.0% | |
ACACAACATCTATGAAAGCA+CGG | + | chr5.3:68664113-68664132 | None:intergenic | 35.0% | |
AGAGAATTTGTGAAAGAAGC+TGG | - | chr5.3:68668191-68668210 | MS.gene29768:intron | 35.0% | |
CAACTGTTAATAACTGCTGA+AGG | + | chr5.3:68667523-68667542 | None:intergenic | 35.0% | |
CACTGACACATTTGTTTACA+TGG | - | chr5.3:68664022-68664041 | MS.gene29768:intron | 35.0% | |
CATTGTAAAGACAGAACCAT+GGG | - | chr5.3:68668259-68668278 | MS.gene29768:CDS | 35.0% | |
CATTTCTGTACAATGTACAC+TGG | - | chr5.3:68665254-68665273 | MS.gene29768:CDS | 35.0% | |
CCGAACATGTAAATCATAAC+AGG | + | chr5.3:68665889-68665908 | None:intergenic | 35.0% | |
CTACTCATGGTGATTCATTA+AGG | - | chr5.3:68664429-68664448 | MS.gene29768:intron | 35.0% | |
CTCCAAATACCAAGATTGTT+GGG | + | chr5.3:68667194-68667213 | None:intergenic | 35.0% | |
CTCTAATACCATATTCCTGA+AGG | + | chr5.3:68665995-68666014 | None:intergenic | 35.0% | |
CTCTAGTAACTTCGATGAAT+TGG | - | chr5.3:68666546-68666565 | MS.gene29768:intron | 35.0% | |
CTGGAAATACATACCTTTGA+TGG | - | chr5.3:68665273-68665292 | MS.gene29768:CDS | 35.0% | |
CTTAATTCCCTTCAGGAATA+TGG | - | chr5.3:68665984-68666003 | MS.gene29768:intron | 35.0% | |
CTTCAGGAATATGGTATTAG+AGG | - | chr5.3:68665993-68666012 | MS.gene29768:intron | 35.0% | |
CTTTGTTGACGAATGCTTAA+TGG | - | chr5.3:68667905-68667924 | MS.gene29768:intron | 35.0% | |
GAAGAGCCTATGAAAATAAG+GGG | + | chr5.3:68664659-68664678 | None:intergenic | 35.0% | |
GAATCAGTTTCGTCAAATAG+CGG | - | chr5.3:68666875-68666894 | MS.gene29768:intron | 35.0% | |
GATAGGTTCATGTAAAAGTG+AGG | - | chr5.3:68664234-68664253 | MS.gene29768:intron | 35.0% | |
GATTAACTCATGAGTCATAG+AGG | + | chr5.3:68667624-68667643 | None:intergenic | 35.0% | |
GCTTCAAGTAGAATCTACTT+TGG | - | chr5.3:68664313-68664332 | MS.gene29768:CDS | 35.0% | |
GGCAAAATCAATTCTACTCA+TGG | - | chr5.3:68664416-68664435 | MS.gene29768:intron | 35.0% | |
GTAAAAAATTAGCTCCTGAG+TGG | - | chr5.3:68666739-68666758 | MS.gene29768:CDS | 35.0% | |
GTAGAATTACATGTTCAGTC+AGG | + | chr5.3:68666650-68666669 | None:intergenic | 35.0% | |
GTTTGATGAAGATGCATTGT+TGG | + | chr5.3:68667873-68667892 | None:intergenic | 35.0% | |
TAAGTACCTGTTAGACAGTT+AGG | - | chr5.3:68665363-68665382 | MS.gene29768:intron | 35.0% | |
TACAATATGTAGAGCATGGT+AGG | + | chr5.3:68665675-68665694 | None:intergenic | 35.0% | |
TCAAGTAGAATCTACTTTGG+AGG | - | chr5.3:68664316-68664335 | MS.gene29768:CDS | 35.0% | |
TTAAATGGAAAAGCAACAGG+TGG | - | chr5.3:68666475-68666494 | MS.gene29768:intron | 35.0% | |
TTACATAGAATGGGAAGACT+AGG | + | chr5.3:68665733-68665752 | None:intergenic | 35.0% | |
TTCCCAACAATCTTGGTATT+TGG | - | chr5.3:68667189-68667208 | MS.gene29768:intron | 35.0% | |
TTGAAAGGGAAGGTTAAACT+GGG | - | chr5.3:68666780-68666799 | MS.gene29768:CDS | 35.0% | |
TTGTTGAATTCTTTGCTCCA+TGG | - | chr5.3:68664977-68664996 | MS.gene29768:intron | 35.0% | |
TTTGAAAGGGAAGGTTAAAC+TGG | - | chr5.3:68666779-68666798 | MS.gene29768:CDS | 35.0% | |
! | GGTATTGAACCTGTTTAGAT+TGG | - | chr5.3:68665317-68665336 | MS.gene29768:CDS | 35.0% |
! | GTCTTTTCTTAATTCCCTTC+AGG | - | chr5.3:68665977-68665996 | MS.gene29768:intron | 35.0% |
! | GTGTTGTCTATAGGATGTTT+TGG | - | chr5.3:68667412-68667431 | MS.gene29768:intron | 35.0% |
! | TATTCGTATTTTCTTGGGGA+GGG | + | chr5.3:68664849-68664868 | None:intergenic | 35.0% |
! | TTATTCGTATTTTCTTGGGG+AGG | + | chr5.3:68664850-68664869 | None:intergenic | 35.0% |
! | TTGTAGAATTTTTCGCACCT+TGG | - | chr5.3:68666593-68666612 | MS.gene29768:intron | 35.0% |
! | TTTGCTATGTTGCTGTATTG+TGG | - | chr5.3:68663724-68663743 | MS.gene29768:intron | 35.0% |
!! | AATATAGGAAGTACTCACCA+AGG | + | chr5.3:68666613-68666632 | None:intergenic | 35.0% |
!! | CTTTTGAAGGAACGGTTAAA+TGG | - | chr5.3:68666460-68666479 | MS.gene29768:intron | 35.0% |
!! | TAAAGGCTCTTTTGAAGGAA+CGG | - | chr5.3:68666452-68666471 | MS.gene29768:intron | 35.0% |
!! | TGTCAGGTTCTGAATTCAAA+TGG | - | chr5.3:68664946-68664965 | MS.gene29768:intron | 35.0% |
!!! | GATGTTTTGGAAGAGAAATG+TGG | - | chr5.3:68667425-68667444 | MS.gene29768:intron | 35.0% |
!!! | GTGCCATTTTGAATAATGTC+AGG | - | chr5.3:68664930-68664949 | MS.gene29768:intron | 35.0% |
AAAAAAGTGGGATCACGAAC+TGG | + | chr5.3:68663615-68663634 | None:intergenic | 40.0% | |
AAAAAGTGGGATCACGAACT+GGG | + | chr5.3:68663614-68663633 | None:intergenic | 40.0% | |
AAACCACCAGTTGATTACCA+AGG | - | chr5.3:68666047-68666066 | MS.gene29768:intron | 40.0% | |
AAATGTGTCAGTGTCTGTGT+CGG | + | chr5.3:68664015-68664034 | None:intergenic | 40.0% | |
AAGCATTCGTCAACAAAGAC+TGG | + | chr5.3:68667903-68667922 | None:intergenic | 40.0% | |
ACAAATGTCATGTAAGCGAC+AGG | + | chr5.3:68665817-68665836 | None:intergenic | 40.0% | |
ACCTTGGACTTGAAGTTGTT+AGG | + | chr5.3:68663565-68663584 | None:intergenic | 40.0% | |
ACTCTTCTTGCAACATCACT+TGG | - | chr5.3:68666316-68666335 | MS.gene29768:intron | 40.0% | |
ACTTTCCCTAACTGTCTAAC+AGG | + | chr5.3:68665372-68665391 | None:intergenic | 40.0% | |
AGATACTCCAATTCCTTACG+AGG | - | chr5.3:68667221-68667240 | MS.gene29768:intron | 40.0% | |
AGTTCAAAAGGAGTCCTTAC+AGG | - | chr5.3:68667549-68667568 | MS.gene29768:intron | 40.0% | |
ATGAGCAGGTTCAATGTTCA+AGG | - | chr5.3:68667165-68667184 | MS.gene29768:intron | 40.0% | |
ATGCTGACAAGGTAAGCTTA+TGG | - | chr5.3:68666817-68666836 | MS.gene29768:CDS | 40.0% | |
CAGTTGCAGAGAAGTTCAAA+AGG | - | chr5.3:68667537-68667556 | MS.gene29768:intron | 40.0% | |
CCATTGTAAAGACAGAACCA+TGG | - | chr5.3:68668258-68668277 | MS.gene29768:CDS | 40.0% | |
CGGTTAAATGGAAAAGCAAC+AGG | - | chr5.3:68666472-68666491 | MS.gene29768:intron | 40.0% | |
GAAGACTAGGAATGTAACGA+AGG | + | chr5.3:68665720-68665739 | None:intergenic | 40.0% | |
GAAGGCAGCTACTGTATTAA+AGG | - | chr5.3:68665035-68665054 | MS.gene29768:CDS | 40.0% | |
GATACTCCAATTCCTTACGA+GGG | - | chr5.3:68667222-68667241 | MS.gene29768:intron | 40.0% | |
GCTCCAAATACCAAGATTGT+TGG | + | chr5.3:68667195-68667214 | None:intergenic | 40.0% | |
GGTCTTGAACAGCTATGTAT+GGG | - | chr5.3:68667945-68667964 | MS.gene29768:intron | 40.0% | |
GGTGCAAACACCTTTATAGT+TGG | + | chr5.3:68666023-68666042 | None:intergenic | 40.0% | |
GGTTCTGTCTTTACAATGGT+GGG | + | chr5.3:68668257-68668276 | None:intergenic | 40.0% | |
GGTTGCAAAGTGTACTTACA+TGG | - | chr5.3:68667801-68667820 | MS.gene29768:intron | 40.0% | |
GTTGTGTATGTTTCGTTCTG+TGG | - | chr5.3:68664126-68664145 | MS.gene29768:intron | 40.0% | |
TCAAGGATTCCCAACAATCT+TGG | - | chr5.3:68667182-68667201 | MS.gene29768:intron | 40.0% | |
TCCTAACAACTTCAAGTCCA+AGG | - | chr5.3:68663561-68663580 | MS.gene29768:CDS | 40.0% | |
TGAAGTGCAAATTCTGCGAT+TGG | + | chr5.3:68666089-68666108 | None:intergenic | 40.0% | |
TGCTATAGTGCTTCTATAGC+TGG | + | chr5.3:68666976-68666995 | None:intergenic | 40.0% | |
TTGCACTTCAACAGGTTTGT+TGG | - | chr5.3:68666099-68666118 | MS.gene29768:intron | 40.0% | |
TTTGTCAGTCTCTAATGAGC+AGG | - | chr5.3:68667151-68667170 | MS.gene29768:intron | 40.0% | |
! | ACAGGTAAAGGCTCTTTTGA+AGG | - | chr5.3:68666447-68666466 | MS.gene29768:intron | 40.0% |
! | ATTCGTATTTTCTTGGGGAG+GGG | + | chr5.3:68664848-68664867 | None:intergenic | 40.0% |
! | ATTTTGGATTCCAAAGCGGA+GGG | - | chr5.3:68667485-68667504 | MS.gene29768:intron | 40.0% |
! | CCATGGTTCTGTCTTTACAA+TGG | + | chr5.3:68668261-68668280 | None:intergenic | 40.0% |
! | CGACATTTTGGATTCCAAAG+CGG | - | chr5.3:68667481-68667500 | MS.gene29768:intron | 40.0% |
! | CTATATAGCTCTGTCACTTC+TGG | + | chr5.3:68667312-68667331 | None:intergenic | 40.0% |
! | CTATCTGGGTGTTTTGTGTT+TGG | - | chr5.3:68663698-68663717 | MS.gene29768:intron | 40.0% |
! | GTAGCCTTGAACGTTAAGAA+AGG | - | chr5.3:68668036-68668055 | MS.gene29768:intron | 40.0% |
! | GTTAGGAGTGAGTTGAAGAA+CGG | + | chr5.3:68663548-68663567 | None:intergenic | 40.0% |
! | TAAGGCTCTGACTCCTATAT+GGG | - | chr5.3:68665011-68665030 | MS.gene29768:CDS | 40.0% |
! | TAATCAACTGGTGGTTTTCC+AGG | + | chr5.3:68666044-68666063 | None:intergenic | 40.0% |
! | TACATACCTTTGATGGACCA+CGG | - | chr5.3:68665280-68665299 | MS.gene29768:CDS | 40.0% |
! | TAGTTCTACCGAAGAAGAAG+CGG | + | chr5.3:68666524-68666543 | None:intergenic | 40.0% |
! | TGGTTCTGTCTTTACAATGG+TGG | + | chr5.3:68668258-68668277 | None:intergenic | 40.0% |
! | TTAGATGCTCTTTTCCACTC+AGG | + | chr5.3:68666756-68666775 | None:intergenic | 40.0% |
! | TTAGGAGTGAGTTGAAGAAC+GGG | + | chr5.3:68663547-68663566 | None:intergenic | 40.0% |
!! | ACTATAAAGGTGTTTGCACC+TGG | - | chr5.3:68666023-68666042 | MS.gene29768:intron | 40.0% |
!! | AGTTCAAAAGCACTCTTGAG+AGG | + | chr5.3:68668072-68668091 | None:intergenic | 40.0% |
!! | CGCTTTGGAATCCAAAATGT+CGG | + | chr5.3:68667483-68667502 | None:intergenic | 40.0% |
!! | GCTTTGGAATCCAAAATGTC+GGG | + | chr5.3:68667482-68667501 | None:intergenic | 40.0% |
!! | GGTTTGTTGGAATCTCTTCT+TGG | - | chr5.3:68666112-68666131 | MS.gene29768:intron | 40.0% |
!! | TGCGATTGGTTTAACATCTC+TGG | + | chr5.3:68666075-68666094 | None:intergenic | 40.0% |
AATTCTTTGCTCCATGGTGC+GGG | - | chr5.3:68664983-68665002 | MS.gene29768:intron | 45.0% | |
ACGTTCAAGGCTACTAATGC+TGG | + | chr5.3:68668030-68668049 | None:intergenic | 45.0% | |
AGAAACCACCGCTTCTTCTT+CGG | - | chr5.3:68666513-68666532 | MS.gene29768:intron | 45.0% | |
ATCCAAAATGTCGGGAAGGA+AGG | + | chr5.3:68667474-68667493 | None:intergenic | 45.0% | |
ATCCTTTCTCACGCTCTCTA+CGG | - | chr5.3:68663511-68663530 | MS.gene29768:CDS | 45.0% | |
CAACACCAACTTTCTGCTCA+AGG | + | chr5.3:68667993-68668012 | None:intergenic | 45.0% | |
CGCAGAATTTGCACTTCAAC+AGG | - | chr5.3:68666091-68666110 | MS.gene29768:intron | 45.0% | |
CTCTAGTGCGAATGATTCGA+TGG | + | chr5.3:68667265-68667284 | None:intergenic | 45.0% | |
GAACCATGGGATGGAAAAGA+TGG | - | chr5.3:68668272-68668291 | MS.gene29768:CDS | 45.0% | |
GAATTCTTTGCTCCATGGTG+CGG | - | chr5.3:68664982-68665001 | MS.gene29768:intron | 45.0% | |
GGGTCTTGAACAGCTATGTA+TGG | - | chr5.3:68667944-68667963 | MS.gene29768:intron | 45.0% | |
GTAAAGACAGAACCATGGGA+TGG | - | chr5.3:68668263-68668282 | MS.gene29768:CDS | 45.0% | |
GTAGAGCATGGTAGGATCTT+GGG | + | chr5.3:68665667-68665686 | None:intergenic | 45.0% | |
GTCAGTGTCCATGTCGTATT+AGG | - | chr5.3:68664084-68664103 | MS.gene29768:intron | 45.0% | |
TCTGACTCCTATATGGGAGA+AGG | - | chr5.3:68665017-68665036 | MS.gene29768:CDS | 45.0% | |
TGGAATCCAAAATGTCGGGA+AGG | + | chr5.3:68667478-68667497 | None:intergenic | 45.0% | |
TGTAGAGCATGGTAGGATCT+TGG | + | chr5.3:68665668-68665687 | None:intergenic | 45.0% | |
TTTGTGAAAGAAGCTGGACG+TGG | - | chr5.3:68668197-68668216 | MS.gene29768:intron | 45.0% | |
! | CATTTTGGATTCCAAAGCGG+AGG | - | chr5.3:68667484-68667503 | MS.gene29768:intron | 45.0% |
! | GAAGCACTATAGCACTGTAG+TGG | - | chr5.3:68666982-68667001 | MS.gene29768:intron | 45.0% |
! | GTAAGGCTCTGACTCCTATA+TGG | - | chr5.3:68665010-68665029 | MS.gene29768:CDS | 45.0% |
! | GTTTAACATCTCTGGCTCCT+TGG | + | chr5.3:68666067-68666086 | None:intergenic | 45.0% |
! | TATAGCTCTGTCACTTCTGG+AGG | + | chr5.3:68667309-68667328 | None:intergenic | 45.0% |
! | TCTCCATCTTTTCCATCCCA+TGG | + | chr5.3:68668278-68668297 | None:intergenic | 45.0% |
! | TCTGTCTTTACAATGGTGGG+AGG | + | chr5.3:68668254-68668273 | None:intergenic | 45.0% |
! | TGTTGACTGTGATGCTGACA+AGG | - | chr5.3:68666806-68666825 | MS.gene29768:CDS | 45.0% |
! | TTCCTTCCTTCCCGACATTT+TGG | - | chr5.3:68667469-68667488 | MS.gene29768:intron | 45.0% |
! | TTTTGGATTCCAAAGCGGAG+GGG | - | chr5.3:68667486-68667505 | MS.gene29768:intron | 45.0% |
!! | AAAGTTGGTGTTGGTGGGTA+TGG | - | chr5.3:68668000-68668019 | MS.gene29768:intron | 45.0% |
!! | AGCAGAAAGTTGGTGTTGGT+GGG | - | chr5.3:68667995-68668014 | MS.gene29768:intron | 45.0% |
!! | CTTGAGCAGAAAGTTGGTGT+TGG | - | chr5.3:68667991-68668010 | MS.gene29768:intron | 45.0% |
ACCACGGACGATGCAAAACA+TGG | - | chr5.3:68665296-68665315 | MS.gene29768:CDS | 50.0% | |
ACGACATGGACACTGACATG+TGG | + | chr5.3:68664081-68664100 | None:intergenic | 50.0% | |
AGGAGGACACTTGACCCTAT+TGG | + | chr5.3:68665554-68665573 | None:intergenic | 50.0% | |
ATCATTCGCACTAGAGCAGC+TGG | - | chr5.3:68667269-68667288 | MS.gene29768:intron | 50.0% | |
CACGGACACCTAATACGACA+TGG | + | chr5.3:68664095-68664114 | None:intergenic | 50.0% | |
CCAACTTTCTGCTCAAGGTC+TGG | + | chr5.3:68667988-68668007 | None:intergenic | 50.0% | |
CCAGACCTTGAGCAGAAAGT+TGG | - | chr5.3:68667985-68668004 | MS.gene29768:intron | 50.0% | |
CTAGCACCCTCGTAAGGAAT+TGG | + | chr5.3:68667231-68667250 | None:intergenic | 50.0% | |
GCAGGAGAACAAACACTCAC+TGG | + | chr5.3:68667336-68667355 | None:intergenic | 50.0% | |
GGAAAACCTGAGCCAGAGAT+TGG | + | chr5.3:68665098-68665117 | None:intergenic | 50.0% | |
GGAGGACACTTGACCCTATT+GGG | + | chr5.3:68665553-68665572 | None:intergenic | 50.0% | |
GTAGCTGCCTTCTCCCATAT+AGG | + | chr5.3:68665027-68665046 | None:intergenic | 50.0% | |
TGCTGATGCTCACCAATCTC+TGG | - | chr5.3:68665083-68665102 | MS.gene29768:CDS | 50.0% | |
TTCTACCGAAGAAGAAGCGG+TGG | + | chr5.3:68666521-68666540 | None:intergenic | 50.0% | |
! | AACCGTAGAGAGCGTGAGAA+AGG | + | chr5.3:68663516-68663535 | None:intergenic | 50.0% |
! | ACCATGTTTTGCATCGTCCG+TGG | + | chr5.3:68665300-68665319 | None:intergenic | 50.0% |
! | AGTGAGTTGAAGAACGGGTG+AGG | + | chr5.3:68663542-68663561 | None:intergenic | 50.0% |
! | CTGGCTCCTTGGTAATCAAC+TGG | + | chr5.3:68666056-68666075 | None:intergenic | 50.0% |
! | GCTCCTTGGTAATCAACTGG+TGG | + | chr5.3:68666053-68666072 | None:intergenic | 50.0% |
!! | CATAAAGCACCGGCACTCTT+CGG | - | chr5.3:68663978-68663997 | MS.gene29768:intron | 50.0% |
!! | GAGCAGAAAGTTGGTGTTGG+TGG | - | chr5.3:68667994-68668013 | MS.gene29768:intron | 50.0% |
AAGCTGGACGTGGAGGCAAA+GGG | - | chr5.3:68668207-68668226 | MS.gene29768:intron | 55.0% | |
AGCTATGTATGGGCAGCTGC+CGG | - | chr5.3:68667955-68667974 | MS.gene29768:intron | 55.0% | |
CATCGTCCGTGGTCCATCAA+AGG | + | chr5.3:68665289-68665308 | None:intergenic | 55.0% | |
CTCAAGGTCTGGCTGCTTAC+CGG | + | chr5.3:68667977-68667996 | None:intergenic | 55.0% | |
GTGAAAGAAGCTGGACGTGG+AGG | - | chr5.3:68668200-68668219 | MS.gene29768:intron | 55.0% | |
TGTCAGTGTCTGTGTCGGAC+AGG | + | chr5.3:68664010-68664029 | None:intergenic | 55.0% | |
! | AGGCCTAATCCGAAGAGTGC+CGG | + | chr5.3:68663990-68664009 | None:intergenic | 55.0% |
! | GCAGTTCTAGCACCCTCGTA+AGG | + | chr5.3:68667237-68667256 | None:intergenic | 55.0% |
! | TCTGTTTCTCCCCTCCGCTT+TGG | + | chr5.3:68667498-68667517 | None:intergenic | 55.0% |
! | TGCTCACCAATCTCTGGCTC+AGG | - | chr5.3:68665089-68665108 | MS.gene29768:intron | 55.0% |
!! | CGAAGAGTGCCGGTGCTTTA+TGG | + | chr5.3:68663980-68663999 | None:intergenic | 55.0% |
GAAGCTGGACGTGGAGGCAA+AGG | - | chr5.3:68668206-68668225 | MS.gene29768:intron | 60.0% | |
GGCAAAGGGAACTTGCCCCT+AGG | - | chr5.3:68668221-68668240 | MS.gene29768:intron | 60.0% | |
! | GCACCGGCACTCTTCGGATT+AGG | - | chr5.3:68663984-68664003 | MS.gene29768:intron | 60.0% |
! | TCCATGGTGCGGGCACTGTA+AGG | - | chr5.3:68664993-68665012 | MS.gene29768:intron | 60.0% |
!! | GGTGGGAGGAGTGTCACCTA+GGG | + | chr5.3:68668240-68668259 | None:intergenic | 60.0% |
!! | GTGGGAGGAGTGTCACCTAG+GGG | + | chr5.3:68668239-68668258 | None:intergenic | 60.0% |
!! | TGGTGGGAGGAGTGTCACCT+AGG | + | chr5.3:68668241-68668260 | None:intergenic | 60.0% |
GCCTTACAGTGCCCGCACCA+TGG | + | chr5.3:68664997-68665016 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 68663460 | 68668370 | 68663460 | ID=MS.gene29768 |
chr5.3 | mRNA | 68663460 | 68668370 | 68663460 | ID=MS.gene29768.t1;Parent=MS.gene29768 |
chr5.3 | exon | 68668248 | 68668370 | 68668248 | ID=MS.gene29768.t1.exon1;Parent=MS.gene29768.t1 |
chr5.3 | CDS | 68668248 | 68668370 | 68668248 | ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1 |
chr5.3 | exon | 68666720 | 68666878 | 68666720 | ID=MS.gene29768.t1.exon2;Parent=MS.gene29768.t1 |
chr5.3 | CDS | 68666720 | 68666878 | 68666720 | ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1 |
chr5.3 | exon | 68665718 | 68665831 | 68665718 | ID=MS.gene29768.t1.exon3;Parent=MS.gene29768.t1 |
chr5.3 | CDS | 68665718 | 68665831 | 68665718 | ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1 |
chr5.3 | exon | 68665216 | 68665379 | 68665216 | ID=MS.gene29768.t1.exon4;Parent=MS.gene29768.t1 |
chr5.3 | CDS | 68665216 | 68665379 | 68665216 | ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1 |
chr5.3 | exon | 68665003 | 68665102 | 68665003 | ID=MS.gene29768.t1.exon5;Parent=MS.gene29768.t1 |
chr5.3 | CDS | 68665003 | 68665102 | 68665003 | ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1 |
chr5.3 | exon | 68664495 | 68664671 | 68664495 | ID=MS.gene29768.t1.exon6;Parent=MS.gene29768.t1 |
chr5.3 | CDS | 68664495 | 68664671 | 68664495 | ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1 |
chr5.3 | exon | 68664260 | 68664405 | 68664260 | ID=MS.gene29768.t1.exon7;Parent=MS.gene29768.t1 |
chr5.3 | CDS | 68664260 | 68664405 | 68664260 | ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1 |
chr5.3 | exon | 68663727 | 68663873 | 68663727 | ID=MS.gene29768.t1.exon8;Parent=MS.gene29768.t1 |
chr5.3 | CDS | 68663727 | 68663873 | 68663727 | ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1 |
chr5.3 | exon | 68663460 | 68663637 | 68663460 | ID=MS.gene29768.t1.exon9;Parent=MS.gene29768.t1 |
chr5.3 | CDS | 68663460 | 68663637 | 68663460 | ID=cds.MS.gene29768.t1;Parent=MS.gene29768.t1 |
Gene Sequence |
Protein sequence |