Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90626.t1 | XP_003616851.1 | 93.8 | 435 | 24 | 1 | 1 | 432 | 1 | 435 | 3.80E-234 | 820.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90626.t1 | Q67UF5 | 75.7 | 420 | 92 | 3 | 22 | 432 | 23 | 441 | 1.1e-186 | 654.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90626.t1 | G7KH66 | 93.8 | 435 | 24 | 1 | 1 | 432 | 1 | 435 | 2.7e-234 | 820.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049887 | MS.gene90626 | 0.800605 | 1.33E-48 | -1.69E-46 |
MS.gene050838 | MS.gene90626 | 0.834952 | 2.23E-56 | -1.69E-46 |
MS.gene051120 | MS.gene90626 | 0.804457 | 2.14E-49 | -1.69E-46 |
MS.gene051850 | MS.gene90626 | 0.806229 | 9.10E-50 | -1.69E-46 |
MS.gene051885 | MS.gene90626 | 0.803579 | 3.26E-49 | -1.69E-46 |
MS.gene057094 | MS.gene90626 | 0.824214 | 9.11E-54 | -1.69E-46 |
MS.gene059171 | MS.gene90626 | 0.803612 | 3.21E-49 | -1.69E-46 |
MS.gene06113 | MS.gene90626 | 0.810054 | 1.39E-50 | -1.69E-46 |
MS.gene06117 | MS.gene90626 | 0.846774 | 1.76E-59 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90626.t1 | MTR_5g084930 | 93.793 | 435 | 24 | 1 | 1 | 432 | 1 | 435 | 0.0 | 832 |
MS.gene90626.t1 | MTR_2g021750 | 84.211 | 133 | 21 | 0 | 1 | 133 | 1 | 133 | 1.99e-72 | 231 |
MS.gene90626.t1 | MTR_2g021750 | 44.037 | 109 | 60 | 1 | 156 | 264 | 26 | 133 | 2.25e-23 | 100 |
MS.gene90626.t1 | MTR_7g112040 | 33.456 | 272 | 155 | 8 | 1 | 267 | 3 | 253 | 9.43e-40 | 146 |
MS.gene90626.t1 | MTR_7g112040 | 42.308 | 130 | 67 | 4 | 157 | 280 | 23 | 150 | 2.97e-21 | 95.1 |
MS.gene90626.t1 | MTR_1g087520 | 34.583 | 240 | 137 | 5 | 33 | 267 | 34 | 258 | 4.20e-39 | 144 |
MS.gene90626.t1 | MTR_1g087520 | 52.041 | 98 | 44 | 2 | 28 | 122 | 147 | 244 | 5.29e-24 | 102 |
MS.gene90626.t1 | MTR_1g087520 | 40.625 | 128 | 68 | 4 | 163 | 284 | 34 | 159 | 2.90e-19 | 89.4 |
MS.gene90626.t1 | MTR_3g088220 | 42.202 | 109 | 56 | 4 | 30 | 132 | 35 | 142 | 4.84e-17 | 83.6 |
MS.gene90626.t1 | MTR_3g088220 | 36.170 | 141 | 79 | 4 | 163 | 298 | 38 | 172 | 3.10e-16 | 81.3 |
MS.gene90626.t1 | MTR_3g088220 | 32.381 | 105 | 69 | 1 | 26 | 128 | 375 | 479 | 2.46e-11 | 65.9 |
MS.gene90626.t1 | MTR_1g096790 | 41.176 | 102 | 55 | 3 | 30 | 128 | 28 | 127 | 8.53e-17 | 82.4 |
MS.gene90626.t1 | MTR_1g096790 | 28.251 | 223 | 133 | 6 | 163 | 379 | 31 | 232 | 1.13e-14 | 75.9 |
MS.gene90626.t1 | MTR_2g094180 | 41.600 | 125 | 65 | 4 | 135 | 256 | 55 | 174 | 1.64e-14 | 75.9 |
MS.gene90626.t1 | MTR_2g094180 | 48.913 | 92 | 44 | 3 | 30 | 120 | 80 | 169 | 3.72e-13 | 71.6 |
MS.gene90626.t1 | MTR_2g094180 | 32.609 | 138 | 87 | 3 | 36 | 169 | 424 | 559 | 6.52e-12 | 67.8 |
MS.gene90626.t1 | MTR_2g094180 | 27.184 | 206 | 132 | 6 | 64 | 259 | 322 | 519 | 1.23e-11 | 67.0 |
MS.gene90626.t1 | MTR_2g079420 | 28.188 | 149 | 97 | 3 | 107 | 245 | 9 | 157 | 2.30e-14 | 71.2 |
MS.gene90626.t1 | MTR_2g079420 | 34.653 | 101 | 66 | 0 | 11 | 111 | 51 | 151 | 4.14e-13 | 67.8 |
MS.gene90626.t1 | MTR_8g059015 | 41.463 | 82 | 48 | 0 | 30 | 111 | 73 | 154 | 3.40e-14 | 70.9 |
MS.gene90626.t1 | MTR_8g059015 | 25.131 | 191 | 123 | 6 | 72 | 259 | 2 | 175 | 2.95e-12 | 65.5 |
MS.gene90626.t1 | MTR_1g114290 | 34.483 | 116 | 72 | 2 | 24 | 138 | 64 | 176 | 1.93e-13 | 68.9 |
MS.gene90626.t1 | MTR_1g114290 | 30.631 | 111 | 73 | 1 | 153 | 263 | 63 | 169 | 8.09e-13 | 67.0 |
MS.gene90626.t1 | MTR_2g093680 | 27.966 | 118 | 82 | 2 | 17 | 132 | 29 | 145 | 3.95e-13 | 67.4 |
MS.gene90626.t1 | MTR_2g093680 | 28.333 | 120 | 83 | 2 | 156 | 273 | 37 | 155 | 6.10e-12 | 63.9 |
MS.gene90626.t1 | MTR_1g098660 | 32.558 | 86 | 58 | 0 | 34 | 119 | 66 | 151 | 6.93e-13 | 67.0 |
MS.gene90626.t1 | MTR_1g098660 | 29.808 | 104 | 66 | 3 | 166 | 268 | 68 | 165 | 2.78e-11 | 62.4 |
MS.gene90626.t1 | MTR_2g079340 | 41.975 | 81 | 47 | 0 | 31 | 111 | 37 | 117 | 1.06e-12 | 66.2 |
MS.gene90626.t1 | MTR_2g079340 | 36.620 | 71 | 45 | 0 | 167 | 237 | 43 | 113 | 3.58e-11 | 61.6 |
MS.gene90626.t1 | MTR_4g059450 | 48.421 | 95 | 40 | 5 | 30 | 120 | 102 | 191 | 1.39e-12 | 70.1 |
MS.gene90626.t1 | MTR_2g079400 | 34.513 | 113 | 68 | 1 | 5 | 111 | 3 | 115 | 5.16e-12 | 63.5 |
MS.gene90626.t1 | MTR_3g089065 | 36.709 | 79 | 50 | 0 | 33 | 111 | 73 | 151 | 1.11e-11 | 63.5 |
MS.gene90626.t1 | MTR_4g080800 | 32.967 | 91 | 52 | 2 | 160 | 242 | 143 | 232 | 2.07e-11 | 65.9 |
MS.gene90626.t1 | MTR_4g085880 | 36.905 | 84 | 50 | 1 | 31 | 111 | 63 | 146 | 7.04e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90626.t1 | AT1G04980 | 70.045 | 444 | 120 | 5 | 1 | 432 | 5 | 447 | 0.0 | 645 |
MS.gene90626.t1 | AT2G32920 | 70.657 | 426 | 117 | 5 | 14 | 432 | 16 | 440 | 0.0 | 617 |
MS.gene90626.t1 | AT2G47470 | 36.667 | 240 | 132 | 5 | 33 | 267 | 28 | 252 | 1.66e-44 | 156 |
MS.gene90626.t1 | AT2G47470 | 53.398 | 103 | 43 | 3 | 30 | 128 | 143 | 244 | 4.90e-27 | 109 |
MS.gene90626.t1 | AT2G47470 | 39.370 | 127 | 71 | 3 | 163 | 284 | 28 | 153 | 1.35e-19 | 88.6 |
MS.gene90626.t1 | AT2G47470 | 36.667 | 240 | 132 | 5 | 33 | 267 | 28 | 252 | 3.91e-44 | 157 |
MS.gene90626.t1 | AT2G47470 | 53.398 | 103 | 43 | 3 | 30 | 128 | 143 | 244 | 5.65e-27 | 110 |
MS.gene90626.t1 | AT2G47470 | 39.370 | 127 | 71 | 3 | 163 | 284 | 28 | 153 | 3.09e-19 | 89.0 |
MS.gene90626.t1 | AT2G47470 | 36.667 | 240 | 132 | 5 | 33 | 267 | 28 | 252 | 4.00e-44 | 157 |
MS.gene90626.t1 | AT2G47470 | 53.398 | 103 | 43 | 3 | 30 | 128 | 143 | 244 | 4.83e-27 | 110 |
MS.gene90626.t1 | AT2G47470 | 39.370 | 127 | 71 | 3 | 163 | 284 | 28 | 153 | 3.48e-19 | 88.6 |
MS.gene90626.t1 | AT2G47470 | 36.667 | 240 | 132 | 5 | 33 | 267 | 28 | 252 | 6.79e-44 | 157 |
MS.gene90626.t1 | AT2G47470 | 53.398 | 103 | 43 | 3 | 30 | 128 | 143 | 244 | 6.49e-27 | 111 |
MS.gene90626.t1 | AT2G47470 | 39.370 | 127 | 71 | 3 | 163 | 284 | 28 | 153 | 3.88e-19 | 89.0 |
MS.gene90626.t1 | AT3G54960 | 46.154 | 91 | 48 | 1 | 30 | 120 | 101 | 190 | 9.66e-19 | 89.0 |
MS.gene90626.t1 | AT3G54960 | 30.556 | 144 | 93 | 3 | 163 | 306 | 104 | 240 | 2.71e-15 | 78.2 |
MS.gene90626.t1 | AT3G54960 | 46.154 | 91 | 48 | 1 | 30 | 120 | 101 | 190 | 1.39e-18 | 88.6 |
MS.gene90626.t1 | AT3G54960 | 30.556 | 144 | 93 | 3 | 163 | 306 | 104 | 240 | 3.82e-15 | 77.8 |
MS.gene90626.t1 | AT3G54960 | 37.363 | 91 | 49 | 2 | 36 | 126 | 445 | 527 | 3.73e-11 | 65.5 |
MS.gene90626.t1 | AT1G21750 | 41.284 | 109 | 57 | 4 | 30 | 132 | 32 | 139 | 1.03e-17 | 85.5 |
MS.gene90626.t1 | AT1G21750 | 35.849 | 106 | 62 | 3 | 163 | 263 | 35 | 139 | 9.62e-15 | 76.6 |
MS.gene90626.t1 | AT1G21750 | 37.113 | 97 | 59 | 1 | 26 | 120 | 372 | 468 | 1.25e-12 | 70.1 |
MS.gene90626.t1 | AT1G21750 | 35.577 | 104 | 64 | 2 | 165 | 266 | 381 | 483 | 3.70e-11 | 65.5 |
MS.gene90626.t1 | AT1G21750 | 41.284 | 109 | 57 | 4 | 30 | 132 | 32 | 139 | 1.07e-17 | 85.5 |
MS.gene90626.t1 | AT1G21750 | 35.849 | 106 | 62 | 3 | 163 | 263 | 35 | 139 | 9.29e-15 | 76.6 |
MS.gene90626.t1 | AT1G21750 | 37.113 | 97 | 59 | 1 | 26 | 120 | 372 | 468 | 1.37e-12 | 69.7 |
MS.gene90626.t1 | AT5G60640 | 36.493 | 211 | 111 | 10 | 30 | 226 | 105 | 306 | 1.40e-17 | 85.5 |
MS.gene90626.t1 | AT5G60640 | 42.424 | 99 | 49 | 4 | 161 | 256 | 106 | 199 | 3.99e-15 | 77.8 |
MS.gene90626.t1 | AT5G60640 | 26.733 | 202 | 130 | 5 | 68 | 259 | 351 | 544 | 8.64e-12 | 67.4 |
MS.gene90626.t1 | AT5G60640 | 36.493 | 211 | 111 | 10 | 30 | 226 | 105 | 306 | 1.59e-17 | 85.1 |
MS.gene90626.t1 | AT5G60640 | 42.424 | 99 | 49 | 4 | 161 | 256 | 106 | 199 | 4.98e-15 | 77.4 |
MS.gene90626.t1 | AT5G60640 | 26.633 | 199 | 129 | 5 | 62 | 252 | 346 | 535 | 3.61e-11 | 65.5 |
MS.gene90626.t1 | AT5G60640 | 36.493 | 211 | 111 | 10 | 30 | 226 | 105 | 306 | 1.69e-17 | 85.1 |
MS.gene90626.t1 | AT5G60640 | 42.424 | 99 | 49 | 4 | 161 | 256 | 106 | 199 | 3.11e-15 | 78.2 |
MS.gene90626.t1 | AT5G60640 | 34.737 | 95 | 60 | 1 | 167 | 259 | 386 | 480 | 3.73e-11 | 65.5 |
MS.gene90626.t1 | AT1G77510 | 40.367 | 109 | 58 | 4 | 30 | 132 | 31 | 138 | 8.36e-17 | 82.8 |
MS.gene90626.t1 | AT1G77510 | 31.169 | 154 | 95 | 4 | 152 | 300 | 23 | 170 | 1.57e-16 | 82.0 |
MS.gene90626.t1 | AT1G77510 | 26.820 | 261 | 163 | 11 | 14 | 259 | 227 | 474 | 5.53e-11 | 64.7 |
MS.gene90626.t1 | AT1G35620 | 38.235 | 102 | 58 | 3 | 30 | 128 | 34 | 133 | 7.87e-15 | 76.6 |
MS.gene90626.t1 | AT1G35620 | 27.897 | 233 | 139 | 8 | 155 | 380 | 29 | 239 | 2.61e-14 | 75.1 |
MS.gene90626.t1 | AT1G07960 | 29.167 | 120 | 82 | 2 | 28 | 144 | 25 | 144 | 4.98e-14 | 69.7 |
MS.gene90626.t1 | AT1G07960 | 25.439 | 114 | 82 | 2 | 154 | 265 | 21 | 133 | 9.82e-14 | 68.9 |
MS.gene90626.t1 | AT1G07960 | 29.167 | 120 | 82 | 2 | 28 | 144 | 25 | 144 | 4.98e-14 | 69.7 |
MS.gene90626.t1 | AT1G07960 | 25.439 | 114 | 82 | 2 | 154 | 265 | 21 | 133 | 9.82e-14 | 68.9 |
MS.gene90626.t1 | AT1G07960 | 29.167 | 120 | 82 | 2 | 28 | 144 | 25 | 144 | 4.98e-14 | 69.7 |
MS.gene90626.t1 | AT1G07960 | 25.439 | 114 | 82 | 2 | 154 | 265 | 21 | 133 | 9.82e-14 | 68.9 |
MS.gene90626.t1 | AT1G07960 | 29.167 | 120 | 82 | 2 | 28 | 144 | 25 | 144 | 4.98e-14 | 69.7 |
MS.gene90626.t1 | AT1G07960 | 25.439 | 114 | 82 | 2 | 154 | 265 | 21 | 133 | 9.82e-14 | 68.9 |
MS.gene90626.t1 | AT1G43560 | 37.209 | 86 | 54 | 0 | 34 | 119 | 64 | 149 | 1.48e-13 | 68.9 |
MS.gene90626.t1 | AT1G76760 | 31.429 | 105 | 68 | 1 | 34 | 138 | 69 | 169 | 2.25e-13 | 68.6 |
MS.gene90626.t1 | AT1G50320 | 30.000 | 150 | 89 | 4 | 121 | 263 | 30 | 170 | 4.24e-12 | 65.1 |
MS.gene90626.t1 | AT4G03520 | 36.082 | 97 | 59 | 2 | 151 | 245 | 74 | 169 | 4.27e-12 | 65.1 |
MS.gene90626.t1 | AT3G15360 | 37.805 | 82 | 51 | 0 | 30 | 111 | 88 | 169 | 5.76e-12 | 65.1 |
MS.gene90626.t1 | AT4G27080 | 33.663 | 101 | 58 | 2 | 150 | 242 | 133 | 232 | 3.52e-11 | 65.5 |
MS.gene90626.t1 | AT4G27080 | 33.663 | 101 | 58 | 2 | 150 | 242 | 185 | 284 | 3.89e-11 | 65.5 |
MS.gene90626.t1 | AT1G03680 | 26.282 | 156 | 95 | 4 | 110 | 245 | 8 | 163 | 6.93e-11 | 61.6 |
Find 107 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCTTCCCTTTCAAATTAT+TGG | 0.104762 | 5.1:-66812993 | None:intergenic |
TTCCCAACAATCTTGGTATT+TGG | 0.173156 | 5.1:+66813406 | MS.gene90626:CDS |
TTCCTTCCTTCCCGACATTT+TGG | 0.184244 | 5.1:+66813686 | MS.gene90626:CDS |
CTTAATTCCCTTCAGGAATA+TGG | 0.210374 | 5.1:+66812205 | MS.gene90626:intron |
GAAGGCAGCTACTGTATTAA+AGG | 0.276220 | 5.1:+66811289 | MS.gene90626:CDS |
CTCTAGTAACTTCGATGAAT+TGG | 0.285509 | 5.1:+66812765 | MS.gene90626:CDS |
CTTCAGGAATATGGTATTAG+AGG | 0.289766 | 5.1:+66812214 | MS.gene90626:intron |
CTATATAGCTCTGTCACTTC+TGG | 0.297987 | 5.1:-66813526 | None:intergenic |
GTTTCCTTATAGTTCATCTT+TGG | 0.305542 | 5.1:-66814572 | None:intergenic |
TTTGAAAGGGAAGGTTAAAC+TGG | 0.309941 | 5.1:+66813000 | MS.gene90626:CDS |
GTAAGGCTCTGACTCCTATA+TGG | 0.316417 | 5.1:+66811264 | MS.gene90626:CDS |
TGCGATTGGTTTAACATCTC+TGG | 0.351595 | 5.1:-66812293 | None:intergenic |
CTCAAGGTCTGGCTGCTTAC+CGG | 0.356762 | 5.1:-66814192 | None:intergenic |
TAGAGGATTTCCAACTATAA+AGG | 0.370686 | 5.1:+66812231 | MS.gene90626:CDS |
AACACCTTTCTTAACGTTCA+AGG | 0.373568 | 5.1:-66814258 | None:intergenic |
CGCAGAATATGCACTTCAAC+AGG | 0.373604 | 5.1:+66812312 | MS.gene90626:CDS |
TCAACCAAAGATGAACTATA+AGG | 0.387123 | 5.1:+66814568 | MS.gene90626:CDS |
AAAGTTGGTGTTGGTGGGTA+TGG | 0.390826 | 5.1:+66814218 | MS.gene90626:CDS |
GGGTCTTGAACAGCTATGTA+TGG | 0.397598 | 5.1:+66814162 | MS.gene90626:intron |
CTAGCACCCTCGTAAGGAAT+TGG | 0.409040 | 5.1:-66813445 | None:intergenic |
TCAAGGATTCCCAACAATCT+TGG | 0.416145 | 5.1:+66813399 | MS.gene90626:CDS |
TCCATGGTGCGGGCACTGTA+AGG | 0.416505 | 5.1:+66811247 | MS.gene90626:CDS |
ACCTTGGACTTGAAGTTGTT+AGG | 0.419712 | 5.1:-66809932 | None:intergenic |
TTGTTGAATTCTTTGCTCCA+TGG | 0.424265 | 5.1:+66811231 | MS.gene90626:CDS |
TGCTGATGCTCACCAATCTC+TGG | 0.427343 | 5.1:+66811337 | MS.gene90626:CDS |
TTAGGAGTGAGTTGAAGAAC+AGG | 0.432451 | 5.1:-66809914 | None:intergenic |
CTGGCTCCTTGGTAATCAAC+TGG | 0.433932 | 5.1:-66812274 | None:intergenic |
AGGAATTGGAGTATCTTTAT+CGG | 0.435399 | 5.1:-66813431 | None:intergenic |
AGAAACCACCGCTTCTTCTT+CGG | 0.438238 | 5.1:+66812732 | MS.gene90626:CDS |
AGAGAATTTGTGAAAGAAGC+TGG | 0.439854 | 5.1:+66814409 | MS.gene90626:intron |
GTGTTGTCTATAGGATGTTT+TGG | 0.440808 | 5.1:+66813629 | MS.gene90626:intron |
TTATCAAAAGCAAAGAACTT+TGG | 0.443575 | 5.1:+66812788 | MS.gene90626:CDS |
TTTGTCAGTCTCTAATGAGC+AGG | 0.447245 | 5.1:+66813368 | MS.gene90626:intron |
GGTGCAAACACCTTTATAGT+TGG | 0.448420 | 5.1:-66812241 | None:intergenic |
CCAACTTTCTGCTCAAGGTC+TGG | 0.450805 | 5.1:-66814203 | None:intergenic |
AACCGTAGAGAGCGTGAGAA+AGG | 0.451953 | 5.1:-66809883 | None:intergenic |
TGCTCACCAATCTCTGGCTC+AGG | 0.454025 | 5.1:+66811343 | MS.gene90626:CDS |
GTTTAACATCTCTGGCTCCT+TGG | 0.454708 | 5.1:-66812285 | None:intergenic |
ATGAGCAGGTTCAATGTTCA+AGG | 0.456443 | 5.1:+66813382 | MS.gene90626:CDS |
AATTCTTTGCTCCATGGTGC+GGG | 0.458259 | 5.1:+66811237 | MS.gene90626:CDS |
TTTGGATTCCAAGGCGGAGG+GGG | 0.462438 | 5.1:+66813704 | MS.gene90626:CDS |
ATCATTCGCACTAGAGCAGC+TGG | 0.462465 | 5.1:+66813486 | MS.gene90626:CDS |
TTATAGTTCATCTTTGGTTG+AGG | 0.465932 | 5.1:-66814566 | None:intergenic |
TGTCAGGTTCTGAATTCAAA+TGG | 0.470995 | 5.1:+66811200 | MS.gene90626:intron |
CTCCAAATACCAAGATTGTT+GGG | 0.472339 | 5.1:-66813408 | None:intergenic |
GGAAAACCTGAGCCAGAGAT+TGG | 0.473756 | 5.1:-66811349 | None:intergenic |
CGGTTAAATGGAAAAGCAAC+AGG | 0.474554 | 5.1:+66812691 | MS.gene90626:CDS |
GCTCCAAATACCAAGATTGT+TGG | 0.479181 | 5.1:-66813409 | None:intergenic |
ACGTTCAAGGCTACTAATGC+TGG | 0.481617 | 5.1:-66814245 | None:intergenic |
ATCCTTTCTCACGCTCTCTA+CGG | 0.482498 | 5.1:+66809881 | MS.gene90626:CDS |
CAGTTGCAGAGAAGTTCAAA+AGG | 0.484219 | 5.1:+66813755 | MS.gene90626:CDS |
GGTTCTGTCTTTACAATGGT+GGG | 0.490337 | 5.1:-66814472 | None:intergenic |
ACTATAAAGGTGTTTGCACC+TGG | 0.493971 | 5.1:+66812244 | MS.gene90626:CDS |
GCCTTGGAATCCAAAATGTC+GGG | 0.495320 | 5.1:-66813696 | None:intergenic |
GAACCATGGGATGGAAAAGA+TGG | 0.495841 | 5.1:+66814490 | MS.gene90626:CDS |
TGGTTCTGTCTTTACAATGG+TGG | 0.496152 | 5.1:-66814473 | None:intergenic |
AGAGCATCCAATAATTTGAA+AGG | 0.498898 | 5.1:+66812986 | MS.gene90626:CDS |
CGCCTTGGAATCCAAAATGT+CGG | 0.513014 | 5.1:-66813697 | None:intergenic |
GAAGCTGGACGTGGAGGCAA+AGG | 0.515570 | 5.1:+66814424 | MS.gene90626:CDS |
AAGGCAGCTACTGTATTAAA+GGG | 0.517489 | 5.1:+66811290 | MS.gene90626:CDS |
GAGCATCCAATAATTTGAAA+GGG | 0.518744 | 5.1:+66812987 | MS.gene90626:CDS |
GTAGCTGCCTTCTCCCATAT+AGG | 0.519121 | 5.1:-66811278 | None:intergenic |
TGGTGGGAGGAGTGTCACCT+AGG | 0.522614 | 5.1:-66814456 | None:intergenic |
ATCCAATAATTTGAAAGGGA+AGG | 0.529134 | 5.1:+66812991 | MS.gene90626:CDS |
TAAGGCTCTGACTCCTATAT+GGG | 0.533987 | 5.1:+66811265 | MS.gene90626:CDS |
CCAGACCTTGAGCAGAAAGT+TGG | 0.535182 | 5.1:+66814203 | MS.gene90626:CDS |
GGTGGGAGGAGTGTCACCTA+GGG | 0.535529 | 5.1:-66814455 | None:intergenic |
GAATTCTTTGCTCCATGGTG+CGG | 0.548779 | 5.1:+66811236 | MS.gene90626:CDS |
GAGCAGAAAGTTGGTGTTGG+TGG | 0.549595 | 5.1:+66814212 | MS.gene90626:CDS |
TGAAGTGCATATTCTGCGAT+TGG | 0.550530 | 5.1:-66812307 | None:intergenic |
TCCTAACAACTTCAAGTCCA+AGG | 0.552476 | 5.1:+66809931 | MS.gene90626:CDS |
ATCCAAAATGTCGGGAAGGA+AGG | 0.552840 | 5.1:-66813688 | None:intergenic |
CCATGGTTCTGTCTTTACAA+TGG | 0.553296 | 5.1:-66814476 | None:intergenic |
GTAGCCTTGAACGTTAAGAA+AGG | 0.556407 | 5.1:+66814254 | MS.gene90626:CDS |
CTCTAGTGCGAATGATTCGA+TGG | 0.558140 | 5.1:-66813479 | None:intergenic |
GGTCTTGAACAGCTATGTAT+GGG | 0.559621 | 5.1:+66814163 | MS.gene90626:intron |
AAAAGATGGAGAAATAATTG+AGG | 0.562273 | 5.1:+66814504 | MS.gene90626:CDS |
GCCTTACAGTGCCCGCACCA+TGG | 0.567839 | 5.1:-66811248 | None:intergenic |
CAACTGTTAATAACTGCTGA+AGG | 0.571823 | 5.1:-66813738 | None:intergenic |
GCAGTTCTAGCACCCTCGTA+AGG | 0.576634 | 5.1:-66813451 | None:intergenic |
CAACACCAACTTTCTGCTCA+AGG | 0.577087 | 5.1:-66814208 | None:intergenic |
GCTCCTTGGTAATCAACTGG+TGG | 0.580906 | 5.1:-66812271 | None:intergenic |
AGCAGAAAGTTGGTGTTGGT+GGG | 0.581032 | 5.1:+66814213 | MS.gene90626:CDS |
AAGCTGGACGTGGAGGCAAA+GGG | 0.583780 | 5.1:+66814425 | MS.gene90626:CDS |
TTTGTGAAAGAAGCTGGACG+TGG | 0.587104 | 5.1:+66814415 | MS.gene90626:CDS |
AGCTATGTATGGGCAGCTGC+CGG | 0.590014 | 5.1:+66814173 | MS.gene90626:intron |
AGTGAGTTGAAGAACAGGTG+AGG | 0.594004 | 5.1:-66809909 | None:intergenic |
TCTGACTCCTATATGGGAGA+AGG | 0.598675 | 5.1:+66811271 | MS.gene90626:CDS |
TCTGTCTTTACAATGGTGGG+AGG | 0.605063 | 5.1:-66814469 | None:intergenic |
TAGTTCTACCGAAGAAGAAG+CGG | 0.621191 | 5.1:-66812740 | None:intergenic |
AGTTCAAAAGCACTCTTGAG+AGG | 0.621890 | 5.1:-66814287 | None:intergenic |
CATTGTAAAGACAGAACCAT+GGG | 0.623172 | 5.1:+66814477 | MS.gene90626:CDS |
TTCTACCGAAGAAGAAGCGG+TGG | 0.624355 | 5.1:-66812737 | None:intergenic |
GGCAAAGGGAACTTGCCCCT+AGG | 0.627464 | 5.1:+66814439 | MS.gene90626:CDS |
CTTGAGCAGAAAGTTGGTGT+TGG | 0.628583 | 5.1:+66814209 | MS.gene90626:CDS |
TTGAAAGGGAAGGTTAAACT+GGG | 0.631529 | 5.1:+66813001 | MS.gene90626:CDS |
TGGAATCCAAAATGTCGGGA+AGG | 0.635224 | 5.1:-66813692 | None:intergenic |
GATACTCCAATTCCTTACGA+GGG | 0.636183 | 5.1:+66813439 | MS.gene90626:CDS |
TGTTGACTGTGATGCTGACA+AGG | 0.636371 | 5.1:+66813027 | MS.gene90626:CDS |
GTAAAGACAGAACCATGGGA+TGG | 0.640244 | 5.1:+66814481 | MS.gene90626:CDS |
TATAGCTCTGTCACTTCTGG+AGG | 0.640322 | 5.1:-66813523 | None:intergenic |
GTGAAAGAAGCTGGACGTGG+AGG | 0.650513 | 5.1:+66814418 | MS.gene90626:CDS |
TTAAATGGAAAAGCAACAGG+TGG | 0.661631 | 5.1:+66812694 | MS.gene90626:CDS |
AGATACTCCAATTCCTTACG+AGG | 0.665654 | 5.1:+66813438 | MS.gene90626:CDS |
GTGGGAGGAGTGTCACCTAG+GGG | 0.673404 | 5.1:-66814454 | None:intergenic |
CCATTGTAAAGACAGAACCA+TGG | 0.708421 | 5.1:+66814476 | MS.gene90626:CDS |
AAACCACCAGTTGATTACCA+AGG | 0.716041 | 5.1:+66812268 | MS.gene90626:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTTATCTTTATACATA+AGG | - | chr5.1:66810994-66811013 | None:intergenic | 10.0% |
!! | GTAATAAATAATTGAAATAT+AGG | - | chr5.1:66812847-66812866 | None:intergenic | 10.0% |
!! | TAATTTATCTTTATACATAA+GGG | - | chr5.1:66810993-66811012 | None:intergenic | 10.0% |
!! | TATAAATAAATTGAAAAGTA+AGG | - | chr5.1:66813281-66813300 | None:intergenic | 10.0% |
!!! | TCATTTTCTAAAATTATTAT+CGG | + | chr5.1:66810385-66810404 | MS.gene90626:intron | 10.0% |
!! | AAAAATAGACTTACATAATT+TGG | - | chr5.1:66814316-66814335 | None:intergenic | 15.0% |
!! | AATATTTGATTGAAACTTTA+AGG | - | chr5.1:66812377-66812396 | None:intergenic | 15.0% |
!! | AATTTATCTTTATACATAAG+GGG | - | chr5.1:66810992-66811011 | None:intergenic | 15.0% |
!! | AATTTGATTAATAACTTGAA+AGG | + | chr5.1:66812511-66812530 | MS.gene90626:intron | 15.0% |
!! | ATAACACATAATATTCATAA+AGG | - | chr5.1:66811474-66811493 | None:intergenic | 15.0% |
!! | ATTTGATTAATAACTTGAAA+GGG | + | chr5.1:66812512-66812531 | MS.gene90626:intron | 15.0% |
!! | TGAAAAATTACTACAAATAA+AGG | + | chr5.1:66812486-66812505 | MS.gene90626:intron | 15.0% |
!! | TTATACTATTGTATTATGAT+TGG | + | chr5.1:66811053-66811072 | MS.gene90626:intron | 15.0% |
!!! | AAAAATTATTCGTATTTTCT+TGG | - | chr5.1:66811109-66811128 | None:intergenic | 15.0% |
!!! | AAAATTATTCGTATTTTCTT+GGG | - | chr5.1:66811108-66811127 | None:intergenic | 15.0% |
!!! | ATAAAATTGTTGATGTTTTA+GGG | + | chr5.1:66811858-66811877 | MS.gene90626:intron | 15.0% |
!!! | TATAAAATTGTTGATGTTTT+AGG | + | chr5.1:66811857-66811876 | MS.gene90626:intron | 15.0% |
!! | AAATTTAAATACTGAATCTG+AGG | - | chr5.1:66811393-66811412 | None:intergenic | 20.0% |
!! | AAGGAAAAACTTTACATATA+AGG | - | chr5.1:66811922-66811941 | None:intergenic | 20.0% |
!! | ATTGAAAAAAGATTAAACCT+TGG | - | chr5.1:66809951-66809970 | None:intergenic | 20.0% |
!! | CACTAATGTAATTTATTCTT+TGG | - | chr5.1:66811982-66812001 | None:intergenic | 20.0% |
!! | CATGTTTAAATCAAGATAAA+AGG | + | chr5.1:66813916-66813935 | MS.gene90626:intron | 20.0% |
!! | TACTAACTAAACTCAAATTA+AGG | + | chr5.1:66810861-66810880 | MS.gene90626:intron | 20.0% |
!! | TACTTACATGGAAATATAAT+GGG | + | chr5.1:66814031-66814050 | MS.gene90626:intron | 20.0% |
!! | TCAGAATAATATAAACTGAA+AGG | - | chr5.1:66813336-66813355 | None:intergenic | 20.0% |
!! | TTATAGCTTATATGAAAAAC+AGG | + | chr5.1:66811699-66811718 | MS.gene90626:intron | 20.0% |
!! | TTTAACAAACTGTTATTGTT+CGG | + | chr5.1:66813136-66813155 | MS.gene90626:intron | 20.0% |
!!! | AAATTATTCGTATTTTCTTG+GGG | - | chr5.1:66811107-66811126 | None:intergenic | 20.0% |
!!! | AATGGTTTTTTGTTTGAATT+TGG | + | chr5.1:66814141-66814160 | MS.gene90626:intron | 20.0% |
!!! | ATGGTTTTTTGTTTGAATTT+GGG | + | chr5.1:66814142-66814161 | MS.gene90626:intron | 20.0% |
!!! | CTAATTTTATGCTAAATAGT+TGG | + | chr5.1:66814336-66814355 | MS.gene90626:intron | 20.0% |
!!! | GTCTTTTTTTTATTTCTCAA+AGG | + | chr5.1:66812927-66812946 | MS.gene90626:intron | 20.0% |
!!! | TCTTTCAAATTCAACTTTTT+CGG | + | chr5.1:66813860-66813879 | MS.gene90626:intron | 20.0% |
!!! | TTGCAGTTATTTTTAAATTG+CGG | + | chr5.1:66813998-66814017 | MS.gene90626:intron | 20.0% |
! | AAAAGATGGAGAAATAATTG+AGG | + | chr5.1:66814504-66814523 | MS.gene90626:CDS | 25.0% |
! | AAAATACCAGCTAAAAAAGT+GGG | - | chr5.1:66809997-66810016 | None:intergenic | 25.0% |
! | AATATCAATGTATTGGGATT+AGG | + | chr5.1:66812585-66812604 | MS.gene90626:intron | 25.0% |
! | AGTGAGAATATCAATGTATT+GGG | + | chr5.1:66812579-66812598 | MS.gene90626:intron | 25.0% |
! | ATATCAATGTATTGGGATTA+GGG | + | chr5.1:66812586-66812605 | MS.gene90626:intron | 25.0% |
! | CAATAGTATAAAAGACTGTT+TGG | - | chr5.1:66811044-66811063 | None:intergenic | 25.0% |
! | GTACTTACATGGAAATATAA+TGG | + | chr5.1:66814030-66814049 | MS.gene90626:intron | 25.0% |
! | TAGCACTAAAATTTAGTTGA+AGG | + | chr5.1:66810525-66810544 | MS.gene90626:intron | 25.0% |
! | TATAGTTTATTTGCATGTAC+AGG | + | chr5.1:66812648-66812667 | MS.gene90626:intron | 25.0% |
! | TCAGTTTATATTATTCTGAC+AGG | + | chr5.1:66813337-66813356 | MS.gene90626:intron | 25.0% |
! | TTATCAAAAGCAAAGAACTT+TGG | + | chr5.1:66812788-66812807 | MS.gene90626:CDS | 25.0% |
! | TTTATCCTTGAAAACTATCT+GGG | + | chr5.1:66810054-66810073 | MS.gene90626:intron | 25.0% |
!! | AAGTGATTTTATGTTTGGAT+AGG | + | chr5.1:66810550-66810569 | MS.gene90626:intron | 25.0% |
!! | AGGTAAAGTGATTTTATGTT+TGG | + | chr5.1:66810545-66810564 | MS.gene90626:intron | 25.0% |
!! | ATTAAGTTGTTAATCCCAAT+AGG | + | chr5.1:66811787-66811806 | MS.gene90626:intron | 25.0% |
!! | ATTTGATTGAAACTTTAAGG+AGG | - | chr5.1:66812374-66812393 | None:intergenic | 25.0% |
!! | TAGTGTTACAATTTGGATTT+TGG | + | chr5.1:66812408-66812427 | MS.gene90626:intron | 25.0% |
!! | TTAAGTTGTTAATCCCAATA+GGG | + | chr5.1:66811788-66811807 | MS.gene90626:intron | 25.0% |
!! | TTTAGCTGGTATTTTCAAAT+GGG | + | chr5.1:66810002-66810021 | MS.gene90626:intron | 25.0% |
!! | TTTGATTGAAACTTTAAGGA+GGG | - | chr5.1:66812373-66812392 | None:intergenic | 25.0% |
!! | TTTTATCCTTGAAAACTATC+TGG | + | chr5.1:66810053-66810072 | MS.gene90626:intron | 25.0% |
!!! | ATGGTTGATTTTATGATTCT+GGG | + | chr5.1:66810148-66810167 | MS.gene90626:intron | 25.0% |
!!! | TATGGTTGATTTTATGATTC+TGG | + | chr5.1:66810147-66810166 | MS.gene90626:intron | 25.0% |
!!! | TCAAGTAGAATCTATTTTGA+AGG | + | chr5.1:66810728-66810747 | MS.gene90626:intron | 25.0% |
!!! | TTTTAGCTGGTATTTTCAAA+TGG | + | chr5.1:66810001-66810020 | MS.gene90626:intron | 25.0% |
!!! | TTTTTTATTTCTCAAAGGTG+TGG | + | chr5.1:66812932-66812951 | MS.gene90626:intron | 25.0% |
AAATAGATTCTACTTGAAGC+TGG | - | chr5.1:66810725-66810744 | None:intergenic | 30.0% | |
AACCTTCCCTTTCAAATTAT+TGG | - | chr5.1:66812996-66813015 | None:intergenic | 30.0% | |
AACTCAAATTAAGGTCTGTT+TGG | + | chr5.1:66810870-66810889 | MS.gene90626:intron | 30.0% | |
AATATTATGCCATAAAGCAC+CGG | + | chr5.1:66810301-66810320 | MS.gene90626:intron | 30.0% | |
AATTGTAACACTACACATGT+TGG | - | chr5.1:66812401-66812420 | None:intergenic | 30.0% | |
ACATGTGTAGTGTTACAATT+TGG | + | chr5.1:66812401-66812420 | MS.gene90626:intron | 30.0% | |
AGGAATGAAGAAATGAACAA+TGG | - | chr5.1:66811373-66811392 | None:intergenic | 30.0% | |
ATCCAATAATTTGAAAGGGA+AGG | + | chr5.1:66812991-66813010 | MS.gene90626:CDS | 30.0% | |
ATGCAGATAGCAAAAAATAG+CGG | - | chr5.1:66813238-66813257 | None:intergenic | 30.0% | |
ATTAACTCATGAGTCATAGA+GGG | - | chr5.1:66813841-66813860 | None:intergenic | 30.0% | |
CAGTGAGAATATCAATGTAT+TGG | + | chr5.1:66812578-66812597 | MS.gene90626:intron | 30.0% | |
CCTGTTATGATTTACATGTT+CGG | + | chr5.1:66812107-66812126 | MS.gene90626:intron | 30.0% | |
GAAAATACCAGCTAAAAAAG+TGG | - | chr5.1:66809998-66810017 | None:intergenic | 30.0% | |
GAAATTGTAGCTTCTAATTC+TGG | - | chr5.1:66810624-66810643 | None:intergenic | 30.0% | |
GAACCTGACATTATTCAAAA+TGG | - | chr5.1:66811190-66811209 | None:intergenic | 30.0% | |
GAGCATCCAATAATTTGAAA+GGG | + | chr5.1:66812987-66813006 | MS.gene90626:CDS | 30.0% | |
GATATACAATATGTAGAGCA+TGG | - | chr5.1:66811900-66811919 | None:intergenic | 30.0% | |
GGCAAAATAAATTCTACTCT+AGG | + | chr5.1:66810749-66810768 | MS.gene90626:intron | 30.0% | |
TACAATCAAGTAAAGTTTGC+AGG | - | chr5.1:66813571-66813590 | None:intergenic | 30.0% | |
TAGAGGATTTCCAACTATAA+AGG | + | chr5.1:66812231-66812250 | MS.gene90626:CDS | 30.0% | |
TCGAATAAACCAATCTAAAC+AGG | - | chr5.1:66811580-66811599 | None:intergenic | 30.0% | |
TCTAATACCATATTCCTGAA+GGG | - | chr5.1:66812215-66812234 | None:intergenic | 30.0% | |
TTATAGTTCATCTTTGGTTG+AGG | - | chr5.1:66814569-66814588 | None:intergenic | 30.0% | |
TTATTTGCATGTACAGGTAA+AGG | + | chr5.1:66812654-66812673 | MS.gene90626:intron | 30.0% | |
! | AAAATGATGACGTTAGTTAC+AGG | - | chr5.1:66811825-66811844 | None:intergenic | 30.0% |
! | AGAGCATCCAATAATTTGAA+AGG | + | chr5.1:66812986-66813005 | MS.gene90626:CDS | 30.0% |
! | AGATAGATGTCTTCTTTTTG+TGG | + | chr5.1:66812438-66812457 | MS.gene90626:intron | 30.0% |
! | AGGAATTGGAGTATCTTTAT+CGG | - | chr5.1:66813434-66813453 | None:intergenic | 30.0% |
! | ATTTTCTCTTGAAGAACTCA+TGG | + | chr5.1:66814534-66814553 | MS.gene90626:CDS | 30.0% |
! | GTAATGCATCAGGTTTTTAT+GGG | + | chr5.1:66811162-66811181 | MS.gene90626:intron | 30.0% |
! | TAAACATGAGTGTTGTCTAT+AGG | + | chr5.1:66813620-66813639 | MS.gene90626:intron | 30.0% |
! | TATCTAGTTTGTAATGCATC+AGG | + | chr5.1:66811152-66811171 | MS.gene90626:intron | 30.0% |
! | TGTAATGCATCAGGTTTTTA+TGG | + | chr5.1:66811161-66811180 | MS.gene90626:intron | 30.0% |
! | TGTTGATTAGTGTGTGAATA+TGG | + | chr5.1:66810129-66810148 | MS.gene90626:intron | 30.0% |
! | TTGGTTGCTTTACATAGAAT+GGG | - | chr5.1:66811963-66811982 | None:intergenic | 30.0% |
! | TTTGGTTGCTTTACATAGAA+TGG | - | chr5.1:66811964-66811983 | None:intergenic | 30.0% |
! | TTTTATGATTCTGGGTTTTG+TGG | + | chr5.1:66810156-66810175 | MS.gene90626:intron | 30.0% |
! | TTTTCTCTTGAAGAACTCAT+GGG | + | chr5.1:66814535-66814554 | MS.gene90626:CDS | 30.0% |
!! | GAAATATAATGGGTTCTCAT+TGG | + | chr5.1:66814041-66814060 | MS.gene90626:intron | 30.0% |
!!! | CAGGAGCTAATTTTTTACAA+TGG | - | chr5.1:66812958-66812977 | None:intergenic | 30.0% |
!!! | TGTTTTTTTACTTGCCTGTA+AGG | - | chr5.1:66813784-66813803 | None:intergenic | 30.0% |
AACACCTTTCTTAACGTTCA+AGG | - | chr5.1:66814261-66814280 | None:intergenic | 35.0% | |
AAGGCAGCTACTGTATTAAA+GGG | + | chr5.1:66811290-66811309 | MS.gene90626:CDS | 35.0% | |
AAGTACCTGTTAGACAGTTA+GGG | + | chr5.1:66811615-66811634 | MS.gene90626:intron | 35.0% | |
AAGTAGATTCTACTTGAAGC+TGG | - | chr5.1:66810646-66810665 | None:intergenic | 35.0% | |
ACACAACATCTATGAAAGCA+CGG | - | chr5.1:66810446-66810465 | None:intergenic | 35.0% | |
AGAGAATTTGTGAAAGAAGC+TGG | + | chr5.1:66814409-66814428 | MS.gene90626:intron | 35.0% | |
CAACTGTTAATAACTGCTGA+AGG | - | chr5.1:66813741-66813760 | None:intergenic | 35.0% | |
CACTGACACATTTGTTTACA+TGG | + | chr5.1:66810355-66810374 | MS.gene90626:intron | 35.0% | |
CATAAGGGGAAAACAACTTA+TGG | - | chr5.1:66810978-66810997 | None:intergenic | 35.0% | |
CATTGTAAAGACAGAACCAT+GGG | + | chr5.1:66814477-66814496 | MS.gene90626:CDS | 35.0% | |
CATTTCTGTACAATGTACAC+TGG | + | chr5.1:66811505-66811524 | MS.gene90626:intron | 35.0% | |
CCGAACATGTAAATCATAAC+AGG | - | chr5.1:66812110-66812129 | None:intergenic | 35.0% | |
CTACTCTAGGTGATTCATTA+AGG | + | chr5.1:66810762-66810781 | MS.gene90626:intron | 35.0% | |
CTCCAAATACCAAGATTGTT+GGG | - | chr5.1:66813411-66813430 | None:intergenic | 35.0% | |
CTCTAATACCATATTCCTGA+AGG | - | chr5.1:66812216-66812235 | None:intergenic | 35.0% | |
CTCTAGTAACTTCGATGAAT+TGG | + | chr5.1:66812765-66812784 | MS.gene90626:CDS | 35.0% | |
CTGGAAATACATACCTTTGA+TGG | + | chr5.1:66811524-66811543 | MS.gene90626:intron | 35.0% | |
CTTAATTCCCTTCAGGAATA+TGG | + | chr5.1:66812205-66812224 | MS.gene90626:intron | 35.0% | |
CTTCAGGAATATGGTATTAG+AGG | + | chr5.1:66812214-66812233 | MS.gene90626:intron | 35.0% | |
CTTTGTTGACGAATGCTTAA+TGG | + | chr5.1:66814123-66814142 | MS.gene90626:intron | 35.0% | |
GAATCAGTTTCGTCAAATAG+CGG | + | chr5.1:66813096-66813115 | MS.gene90626:intron | 35.0% | |
GATAGGTTCATGTAAAAGTG+AGG | + | chr5.1:66810567-66810586 | MS.gene90626:intron | 35.0% | |
GATTAACTCATGAGTCATAG+AGG | - | chr5.1:66813842-66813861 | None:intergenic | 35.0% | |
GCTTCAAGTAGAATCTACTT+TGG | + | chr5.1:66810646-66810665 | MS.gene90626:intron | 35.0% | |
GTAAAAAATTAGCTCCTGAG+TGG | + | chr5.1:66812960-66812979 | MS.gene90626:CDS | 35.0% | |
GTAGAATTACATGTTCAGTC+AGG | - | chr5.1:66812869-66812888 | None:intergenic | 35.0% | |
GTTTGATGAAGATGCATTGT+TGG | - | chr5.1:66814091-66814110 | None:intergenic | 35.0% | |
TAAGTACCTGTTAGACAGTT+AGG | + | chr5.1:66811614-66811633 | MS.gene90626:intron | 35.0% | |
TACAATATGTAGAGCATGGT+AGG | - | chr5.1:66811896-66811915 | None:intergenic | 35.0% | |
TCAAGTAGAATCTACTTTGG+AGG | + | chr5.1:66810649-66810668 | MS.gene90626:intron | 35.0% | |
TTAAATGGAAAAGCAACAGG+TGG | + | chr5.1:66812694-66812713 | MS.gene90626:CDS | 35.0% | |
TTACATAGAATGGGAAGACT+AGG | - | chr5.1:66811954-66811973 | None:intergenic | 35.0% | |
TTCCCAACAATCTTGGTATT+TGG | + | chr5.1:66813406-66813425 | MS.gene90626:CDS | 35.0% | |
TTGAAAGGGAAGGTTAAACT+GGG | + | chr5.1:66813001-66813020 | MS.gene90626:CDS | 35.0% | |
TTGTTGAATTCTTTGCTCCA+TGG | + | chr5.1:66811231-66811250 | MS.gene90626:CDS | 35.0% | |
TTTGAAAGGGAAGGTTAAAC+TGG | + | chr5.1:66813000-66813019 | MS.gene90626:CDS | 35.0% | |
! | AAACACCCAGATAGTTTTCA+AGG | - | chr5.1:66810062-66810081 | None:intergenic | 35.0% |
! | GGTATTGAACCTGTTTAGAT+TGG | + | chr5.1:66811568-66811587 | MS.gene90626:intron | 35.0% |
! | GTCTTTTCTTAATTCCCTTC+AGG | + | chr5.1:66812198-66812217 | MS.gene90626:intron | 35.0% |
! | GTGTTGTCTATAGGATGTTT+TGG | + | chr5.1:66813629-66813648 | MS.gene90626:intron | 35.0% |
! | TATTCGTATTTTCTTGGGGA+GGG | - | chr5.1:66811103-66811122 | None:intergenic | 35.0% |
! | TTATTCGTATTTTCTTGGGG+AGG | - | chr5.1:66811104-66811123 | None:intergenic | 35.0% |
! | TTGTAGAATTTTTCGCACCT+TGG | + | chr5.1:66812812-66812831 | MS.gene90626:CDS | 35.0% |
! | TTTGCTATGTTGCTGTATTG+TGG | + | chr5.1:66810094-66810113 | MS.gene90626:intron | 35.0% |
!! | AATATAGGAAGTACTCACCA+AGG | - | chr5.1:66812832-66812851 | None:intergenic | 35.0% |
!! | CTTTTGAAGGAACGGTTAAA+TGG | + | chr5.1:66812679-66812698 | MS.gene90626:CDS | 35.0% |
!! | TAAAGGCTCTTTTGAAGGAA+CGG | + | chr5.1:66812671-66812690 | MS.gene90626:CDS | 35.0% |
!! | TGTCAGGTTCTGAATTCAAA+TGG | + | chr5.1:66811200-66811219 | MS.gene90626:intron | 35.0% |
!!! | GATGTTTTGGAAGAGAAATG+TGG | + | chr5.1:66813642-66813661 | MS.gene90626:CDS | 35.0% |
!!! | GTGCCATTTTGAATAATGTC+AGG | + | chr5.1:66811184-66811203 | MS.gene90626:intron | 35.0% |
AAAAAAGTGGGATCACGAAC+TGG | - | chr5.1:66809985-66810004 | None:intergenic | 40.0% | |
AAAAAGTGGGATCACGAACT+GGG | - | chr5.1:66809984-66810003 | None:intergenic | 40.0% | |
AAACCACCAGTTGATTACCA+AGG | + | chr5.1:66812268-66812287 | MS.gene90626:CDS | 40.0% | |
AAATGTGTCAGTGTCTGTGT+CGG | - | chr5.1:66810348-66810367 | None:intergenic | 40.0% | |
ACAAATGTCATGTAAGCGAC+AGG | - | chr5.1:66812038-66812057 | None:intergenic | 40.0% | |
ACCTTGGACTTGAAGTTGTT+AGG | - | chr5.1:66809935-66809954 | None:intergenic | 40.0% | |
ACTCTTCTTGCAACATCACT+TGG | + | chr5.1:66812537-66812556 | MS.gene90626:intron | 40.0% | |
ACTTTCCCTAACTGTCTAAC+AGG | - | chr5.1:66811623-66811642 | None:intergenic | 40.0% | |
AGATACTCCAATTCCTTACG+AGG | + | chr5.1:66813438-66813457 | MS.gene90626:CDS | 40.0% | |
AGTTCAAAAGGAGTCCTTAC+AGG | + | chr5.1:66813767-66813786 | MS.gene90626:intron | 40.0% | |
ATGAGCAGGTTCAATGTTCA+AGG | + | chr5.1:66813382-66813401 | MS.gene90626:CDS | 40.0% | |
ATGCACTTCAACAGGTTTGT+TGG | + | chr5.1:66812320-66812339 | MS.gene90626:intron | 40.0% | |
ATGCTGACAAGGTAAGCTTA+TGG | + | chr5.1:66813038-66813057 | MS.gene90626:intron | 40.0% | |
CAGTTGCAGAGAAGTTCAAA+AGG | + | chr5.1:66813755-66813774 | MS.gene90626:CDS | 40.0% | |
CCATTGTAAAGACAGAACCA+TGG | + | chr5.1:66814476-66814495 | MS.gene90626:CDS | 40.0% | |
CGGTTAAATGGAAAAGCAAC+AGG | + | chr5.1:66812691-66812710 | MS.gene90626:CDS | 40.0% | |
GAAGACTAGGAATGTAACGA+AGG | - | chr5.1:66811941-66811960 | None:intergenic | 40.0% | |
GAAGGCAGCTACTGTATTAA+AGG | + | chr5.1:66811289-66811308 | MS.gene90626:CDS | 40.0% | |
GATACTCCAATTCCTTACGA+GGG | + | chr5.1:66813439-66813458 | MS.gene90626:CDS | 40.0% | |
GCTCCAAATACCAAGATTGT+TGG | - | chr5.1:66813412-66813431 | None:intergenic | 40.0% | |
GGTCTTGAACAGCTATGTAT+GGG | + | chr5.1:66814163-66814182 | MS.gene90626:intron | 40.0% | |
GGTGCAAACACCTTTATAGT+TGG | - | chr5.1:66812244-66812263 | None:intergenic | 40.0% | |
GGTTCTGTCTTTACAATGGT+GGG | - | chr5.1:66814475-66814494 | None:intergenic | 40.0% | |
GGTTGCAAAGTGTACTTACA+TGG | + | chr5.1:66814019-66814038 | MS.gene90626:intron | 40.0% | |
GTTGTGTATGTTTCGTTCTG+TGG | + | chr5.1:66810459-66810478 | MS.gene90626:intron | 40.0% | |
TCAAGGATTCCCAACAATCT+TGG | + | chr5.1:66813399-66813418 | MS.gene90626:CDS | 40.0% | |
TCCTAACAACTTCAAGTCCA+AGG | + | chr5.1:66809931-66809950 | MS.gene90626:CDS | 40.0% | |
TGAAGTGCATATTCTGCGAT+TGG | - | chr5.1:66812310-66812329 | None:intergenic | 40.0% | |
TGCTATAGTGCTTCTATAGC+TGG | - | chr5.1:66813194-66813213 | None:intergenic | 40.0% | |
TTTGTCAGTCTCTAATGAGC+AGG | + | chr5.1:66813368-66813387 | MS.gene90626:intron | 40.0% | |
! | ACAGGTAAAGGCTCTTTTGA+AGG | + | chr5.1:66812666-66812685 | MS.gene90626:intron | 40.0% |
! | ATGATGACGTTAGTTACAGG+AGG | - | chr5.1:66811822-66811841 | None:intergenic | 40.0% |
! | CCATGGTTCTGTCTTTACAA+TGG | - | chr5.1:66814479-66814498 | None:intergenic | 40.0% |
! | CTATATAGCTCTGTCACTTC+TGG | - | chr5.1:66813529-66813548 | None:intergenic | 40.0% |
! | CTATCTGGGTGTTTTGTGTT+TGG | + | chr5.1:66810068-66810087 | MS.gene90626:intron | 40.0% |
! | GTAGCCTTGAACGTTAAGAA+AGG | + | chr5.1:66814254-66814273 | MS.gene90626:CDS | 40.0% |
! | TAAGGCTCTGACTCCTATAT+GGG | + | chr5.1:66811265-66811284 | MS.gene90626:CDS | 40.0% |
! | TAATCAACTGGTGGTTTTCC+AGG | - | chr5.1:66812265-66812284 | None:intergenic | 40.0% |
! | TACATACCTTTGATGGACCA+CGG | + | chr5.1:66811531-66811550 | MS.gene90626:intron | 40.0% |
! | TAGTTCTACCGAAGAAGAAG+CGG | - | chr5.1:66812743-66812762 | None:intergenic | 40.0% |
! | TGGTTCTGTCTTTACAATGG+TGG | - | chr5.1:66814476-66814495 | None:intergenic | 40.0% |
! | TTAGGAGTGAGTTGAAGAAC+AGG | - | chr5.1:66809917-66809936 | None:intergenic | 40.0% |
!! | ACTATAAAGGTGTTTGCACC+TGG | + | chr5.1:66812244-66812263 | MS.gene90626:CDS | 40.0% |
!! | AGTTCAAAAGCACTCTTGAG+AGG | - | chr5.1:66814290-66814309 | None:intergenic | 40.0% |
!! | GGTTTGTTGGAATCTCTTCT+TGG | + | chr5.1:66812333-66812352 | MS.gene90626:intron | 40.0% |
!! | TGCGATTGGTTTAACATCTC+TGG | - | chr5.1:66812296-66812315 | None:intergenic | 40.0% |
AATTCTTTGCTCCATGGTGC+GGG | + | chr5.1:66811237-66811256 | MS.gene90626:CDS | 45.0% | |
ACGTTCAAGGCTACTAATGC+TGG | - | chr5.1:66814248-66814267 | None:intergenic | 45.0% | |
AGAAACCACCGCTTCTTCTT+CGG | + | chr5.1:66812732-66812751 | MS.gene90626:CDS | 45.0% | |
ATCCAAAATGTCGGGAAGGA+AGG | - | chr5.1:66813691-66813710 | None:intergenic | 45.0% | |
ATCCTTTCTCACGCTCTCTA+CGG | + | chr5.1:66809881-66809900 | MS.gene90626:CDS | 45.0% | |
CAACACCAACTTTCTGCTCA+AGG | - | chr5.1:66814211-66814230 | None:intergenic | 45.0% | |
CGCAGAATATGCACTTCAAC+AGG | + | chr5.1:66812312-66812331 | MS.gene90626:CDS | 45.0% | |
CGCCTTGGAATCCAAAATGT+CGG | - | chr5.1:66813700-66813719 | None:intergenic | 45.0% | |
CTCTAGTGCGAATGATTCGA+TGG | - | chr5.1:66813482-66813501 | None:intergenic | 45.0% | |
GAACCATGGGATGGAAAAGA+TGG | + | chr5.1:66814490-66814509 | MS.gene90626:CDS | 45.0% | |
GAATTCTTTGCTCCATGGTG+CGG | + | chr5.1:66811236-66811255 | MS.gene90626:CDS | 45.0% | |
GCCTTGGAATCCAAAATGTC+GGG | - | chr5.1:66813699-66813718 | None:intergenic | 45.0% | |
GGGTCTTGAACAGCTATGTA+TGG | + | chr5.1:66814162-66814181 | MS.gene90626:intron | 45.0% | |
GTAAAGACAGAACCATGGGA+TGG | + | chr5.1:66814481-66814500 | MS.gene90626:CDS | 45.0% | |
GTAGAGCATGGTAGGATCTT+GGG | - | chr5.1:66811888-66811907 | None:intergenic | 45.0% | |
GTCAGTGTCCATGTCGTATT+AGG | + | chr5.1:66810417-66810436 | MS.gene90626:intron | 45.0% | |
TCTGACTCCTATATGGGAGA+AGG | + | chr5.1:66811271-66811290 | MS.gene90626:CDS | 45.0% | |
TGGAATCCAAAATGTCGGGA+AGG | - | chr5.1:66813695-66813714 | None:intergenic | 45.0% | |
TGTAGAGCATGGTAGGATCT+TGG | - | chr5.1:66811889-66811908 | None:intergenic | 45.0% | |
TTTGTGAAAGAAGCTGGACG+TGG | + | chr5.1:66814415-66814434 | MS.gene90626:CDS | 45.0% | |
! | AGTGAGTTGAAGAACAGGTG+AGG | - | chr5.1:66809912-66809931 | None:intergenic | 45.0% |
! | ATTTTGGATTCCAAGGCGGA+GGG | + | chr5.1:66813702-66813721 | MS.gene90626:CDS | 45.0% |
! | CGACATTTTGGATTCCAAGG+CGG | + | chr5.1:66813698-66813717 | MS.gene90626:CDS | 45.0% |
! | GAAGCACTATAGCACTGTAG+TGG | + | chr5.1:66813200-66813219 | MS.gene90626:intron | 45.0% |
! | GTAAGGCTCTGACTCCTATA+TGG | + | chr5.1:66811264-66811283 | MS.gene90626:CDS | 45.0% |
! | GTTTAACATCTCTGGCTCCT+TGG | - | chr5.1:66812288-66812307 | None:intergenic | 45.0% |
! | TATAGCTCTGTCACTTCTGG+AGG | - | chr5.1:66813526-66813545 | None:intergenic | 45.0% |
! | TCCCGACATTTTGGATTCCA+AGG | + | chr5.1:66813695-66813714 | MS.gene90626:CDS | 45.0% |
! | TCTCCATCTTTTCCATCCCA+TGG | - | chr5.1:66814496-66814515 | None:intergenic | 45.0% |
! | TCTGTCTTTACAATGGTGGG+AGG | - | chr5.1:66814472-66814491 | None:intergenic | 45.0% |
! | TGTTGACTGTGATGCTGACA+AGG | + | chr5.1:66813027-66813046 | MS.gene90626:CDS | 45.0% |
! | TTCCTTCCTTCCCGACATTT+TGG | + | chr5.1:66813686-66813705 | MS.gene90626:CDS | 45.0% |
! | TTGGATGCTCTTTTCCACTC+AGG | - | chr5.1:66812977-66812996 | None:intergenic | 45.0% |
!! | AAAGTTGGTGTTGGTGGGTA+TGG | + | chr5.1:66814218-66814237 | MS.gene90626:CDS | 45.0% |
!! | AGCAGAAAGTTGGTGTTGGT+GGG | + | chr5.1:66814213-66814232 | MS.gene90626:CDS | 45.0% |
!! | CTTGAGCAGAAAGTTGGTGT+TGG | + | chr5.1:66814209-66814228 | MS.gene90626:CDS | 45.0% |
!!! | CGTGATCCCACTTTTTTAGC+TGG | + | chr5.1:66809988-66810007 | MS.gene90626:intron | 45.0% |
ACCACGGACGATGCAAAACA+TGG | + | chr5.1:66811547-66811566 | MS.gene90626:intron | 50.0% | |
ACGACATGGACACTGACATG+TGG | - | chr5.1:66810414-66810433 | None:intergenic | 50.0% | |
AGGAGGACACTTGACCCTAT+TGG | - | chr5.1:66811805-66811824 | None:intergenic | 50.0% | |
ATCATTCGCACTAGAGCAGC+TGG | + | chr5.1:66813486-66813505 | MS.gene90626:CDS | 50.0% | |
CACGGACACCTAATACGACA+TGG | - | chr5.1:66810428-66810447 | None:intergenic | 50.0% | |
CCAACTTTCTGCTCAAGGTC+TGG | - | chr5.1:66814206-66814225 | None:intergenic | 50.0% | |
CCAGACCTTGAGCAGAAAGT+TGG | + | chr5.1:66814203-66814222 | MS.gene90626:CDS | 50.0% | |
CTAGCACCCTCGTAAGGAAT+TGG | - | chr5.1:66813448-66813467 | None:intergenic | 50.0% | |
GCAGGAGAACAAACACTCAC+TGG | - | chr5.1:66813553-66813572 | None:intergenic | 50.0% | |
GGAAAACCTGAGCCAGAGAT+TGG | - | chr5.1:66811352-66811371 | None:intergenic | 50.0% | |
GGAGGACACTTGACCCTATT+GGG | - | chr5.1:66811804-66811823 | None:intergenic | 50.0% | |
GTAGCTGCCTTCTCCCATAT+AGG | - | chr5.1:66811281-66811300 | None:intergenic | 50.0% | |
TGCTGATGCTCACCAATCTC+TGG | + | chr5.1:66811337-66811356 | MS.gene90626:CDS | 50.0% | |
TTCTACCGAAGAAGAAGCGG+TGG | - | chr5.1:66812740-66812759 | None:intergenic | 50.0% | |
! | AACCGTAGAGAGCGTGAGAA+AGG | - | chr5.1:66809886-66809905 | None:intergenic | 50.0% |
! | ACCATGTTTTGCATCGTCCG+TGG | - | chr5.1:66811551-66811570 | None:intergenic | 50.0% |
! | CATTTTGGATTCCAAGGCGG+AGG | + | chr5.1:66813701-66813720 | MS.gene90626:CDS | 50.0% |
! | CTGGCTCCTTGGTAATCAAC+TGG | - | chr5.1:66812277-66812296 | None:intergenic | 50.0% |
! | GCTCCTTGGTAATCAACTGG+TGG | - | chr5.1:66812274-66812293 | None:intergenic | 50.0% |
! | TTTTGGATTCCAAGGCGGAG+GGG | + | chr5.1:66813703-66813722 | MS.gene90626:CDS | 50.0% |
!! | CATAAAGCACCGGCACTCTT+CGG | + | chr5.1:66810311-66810330 | MS.gene90626:intron | 50.0% |
!! | GAGCAGAAAGTTGGTGTTGG+TGG | + | chr5.1:66814212-66814231 | MS.gene90626:CDS | 50.0% |
AAGCTGGACGTGGAGGCAAA+GGG | + | chr5.1:66814425-66814444 | MS.gene90626:CDS | 55.0% | |
AGCTATGTATGGGCAGCTGC+CGG | + | chr5.1:66814173-66814192 | MS.gene90626:intron | 55.0% | |
CATCGTCCGTGGTCCATCAA+AGG | - | chr5.1:66811540-66811559 | None:intergenic | 55.0% | |
CTCAAGGTCTGGCTGCTTAC+CGG | - | chr5.1:66814195-66814214 | None:intergenic | 55.0% | |
GTGAAAGAAGCTGGACGTGG+AGG | + | chr5.1:66814418-66814437 | MS.gene90626:CDS | 55.0% | |
TTTGGATTCCAAGGCGGAGG+GGG | + | chr5.1:66813704-66813723 | MS.gene90626:CDS | 55.0% | |
! | ACGCCTAATCCGAAGAGTGC+CGG | - | chr5.1:66810323-66810342 | None:intergenic | 55.0% |
! | GCAGTTCTAGCACCCTCGTA+AGG | - | chr5.1:66813454-66813473 | None:intergenic | 55.0% |
! | TGCTCACCAATCTCTGGCTC+AGG | + | chr5.1:66811343-66811362 | MS.gene90626:CDS | 55.0% |
!! | CGAAGAGTGCCGGTGCTTTA+TGG | - | chr5.1:66810313-66810332 | None:intergenic | 55.0% |
GAAGCTGGACGTGGAGGCAA+AGG | + | chr5.1:66814424-66814443 | MS.gene90626:CDS | 60.0% | |
GGCAAAGGGAACTTGCCCCT+AGG | + | chr5.1:66814439-66814458 | MS.gene90626:CDS | 60.0% | |
! | GCACCGGCACTCTTCGGATT+AGG | + | chr5.1:66810317-66810336 | MS.gene90626:intron | 60.0% |
! | TCCATGGTGCGGGCACTGTA+AGG | + | chr5.1:66811247-66811266 | MS.gene90626:CDS | 60.0% |
!! | GGTGGGAGGAGTGTCACCTA+GGG | - | chr5.1:66814458-66814477 | None:intergenic | 60.0% |
!! | GTGGGAGGAGTGTCACCTAG+GGG | - | chr5.1:66814457-66814476 | None:intergenic | 60.0% |
!! | TGGTGGGAGGAGTGTCACCT+AGG | - | chr5.1:66814459-66814478 | None:intergenic | 60.0% |
GCCTTACAGTGCCCGCACCA+TGG | - | chr5.1:66811251-66811270 | None:intergenic | 65.0% | |
! | CTGTTTCTCCCCCTCCGCCT+TGG | - | chr5.1:66813715-66813734 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 66809830 | 66814588 | 66809830 | ID=MS.gene90626 |
chr5.1 | mRNA | 66809830 | 66814588 | 66809830 | ID=MS.gene90626.t1;Parent=MS.gene90626 |
chr5.1 | exon | 66809830 | 66809952 | 66809830 | ID=MS.gene90626.t1.exon1;Parent=MS.gene90626.t1 |
chr5.1 | CDS | 66809830 | 66809952 | 66809830 | ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1 |
chr5.1 | exon | 66811206 | 66811364 | 66811206 | ID=MS.gene90626.t1.exon2;Parent=MS.gene90626.t1 |
chr5.1 | CDS | 66811206 | 66811364 | 66811206 | ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1 |
chr5.1 | exon | 66812220 | 66812333 | 66812220 | ID=MS.gene90626.t1.exon3;Parent=MS.gene90626.t1 |
chr5.1 | CDS | 66812220 | 66812333 | 66812220 | ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1 |
chr5.1 | exon | 66812670 | 66812833 | 66812670 | ID=MS.gene90626.t1.exon4;Parent=MS.gene90626.t1 |
chr5.1 | CDS | 66812670 | 66812833 | 66812670 | ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1 |
chr5.1 | exon | 66812949 | 66813048 | 66812949 | ID=MS.gene90626.t1.exon5;Parent=MS.gene90626.t1 |
chr5.1 | CDS | 66812949 | 66813048 | 66812949 | ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1 |
chr5.1 | exon | 66813376 | 66813552 | 66813376 | ID=MS.gene90626.t1.exon6;Parent=MS.gene90626.t1 |
chr5.1 | CDS | 66813376 | 66813552 | 66813376 | ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1 |
chr5.1 | exon | 66813642 | 66813778 | 66813642 | ID=MS.gene90626.t1.exon7;Parent=MS.gene90626.t1 |
chr5.1 | CDS | 66813642 | 66813778 | 66813642 | ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1 |
chr5.1 | exon | 66814175 | 66814321 | 66814175 | ID=MS.gene90626.t1.exon8;Parent=MS.gene90626.t1 |
chr5.1 | CDS | 66814175 | 66814321 | 66814175 | ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1 |
chr5.1 | exon | 66814411 | 66814588 | 66814411 | ID=MS.gene90626.t1.exon9;Parent=MS.gene90626.t1 |
chr5.1 | CDS | 66814411 | 66814588 | 66814411 | ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1 |
Gene Sequence |
Protein sequence |