AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90626


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90626.t1 MTR_5g084930 93.793 435 24 1 1 432 1 435 0.0 832
MS.gene90626.t1 MTR_2g021750 84.211 133 21 0 1 133 1 133 1.99e-72 231
MS.gene90626.t1 MTR_2g021750 44.037 109 60 1 156 264 26 133 2.25e-23 100
MS.gene90626.t1 MTR_7g112040 33.456 272 155 8 1 267 3 253 9.43e-40 146
MS.gene90626.t1 MTR_7g112040 42.308 130 67 4 157 280 23 150 2.97e-21 95.1
MS.gene90626.t1 MTR_1g087520 34.583 240 137 5 33 267 34 258 4.20e-39 144
MS.gene90626.t1 MTR_1g087520 52.041 98 44 2 28 122 147 244 5.29e-24 102
MS.gene90626.t1 MTR_1g087520 40.625 128 68 4 163 284 34 159 2.90e-19 89.4
MS.gene90626.t1 MTR_3g088220 42.202 109 56 4 30 132 35 142 4.84e-17 83.6
MS.gene90626.t1 MTR_3g088220 36.170 141 79 4 163 298 38 172 3.10e-16 81.3
MS.gene90626.t1 MTR_3g088220 32.381 105 69 1 26 128 375 479 2.46e-11 65.9
MS.gene90626.t1 MTR_1g096790 41.176 102 55 3 30 128 28 127 8.53e-17 82.4
MS.gene90626.t1 MTR_1g096790 28.251 223 133 6 163 379 31 232 1.13e-14 75.9
MS.gene90626.t1 MTR_2g094180 41.600 125 65 4 135 256 55 174 1.64e-14 75.9
MS.gene90626.t1 MTR_2g094180 48.913 92 44 3 30 120 80 169 3.72e-13 71.6
MS.gene90626.t1 MTR_2g094180 32.609 138 87 3 36 169 424 559 6.52e-12 67.8
MS.gene90626.t1 MTR_2g094180 27.184 206 132 6 64 259 322 519 1.23e-11 67.0
MS.gene90626.t1 MTR_2g079420 28.188 149 97 3 107 245 9 157 2.30e-14 71.2
MS.gene90626.t1 MTR_2g079420 34.653 101 66 0 11 111 51 151 4.14e-13 67.8
MS.gene90626.t1 MTR_8g059015 41.463 82 48 0 30 111 73 154 3.40e-14 70.9
MS.gene90626.t1 MTR_8g059015 25.131 191 123 6 72 259 2 175 2.95e-12 65.5
MS.gene90626.t1 MTR_1g114290 34.483 116 72 2 24 138 64 176 1.93e-13 68.9
MS.gene90626.t1 MTR_1g114290 30.631 111 73 1 153 263 63 169 8.09e-13 67.0
MS.gene90626.t1 MTR_2g093680 27.966 118 82 2 17 132 29 145 3.95e-13 67.4
MS.gene90626.t1 MTR_2g093680 28.333 120 83 2 156 273 37 155 6.10e-12 63.9
MS.gene90626.t1 MTR_1g098660 32.558 86 58 0 34 119 66 151 6.93e-13 67.0
MS.gene90626.t1 MTR_1g098660 29.808 104 66 3 166 268 68 165 2.78e-11 62.4
MS.gene90626.t1 MTR_2g079340 41.975 81 47 0 31 111 37 117 1.06e-12 66.2
MS.gene90626.t1 MTR_2g079340 36.620 71 45 0 167 237 43 113 3.58e-11 61.6
MS.gene90626.t1 MTR_4g059450 48.421 95 40 5 30 120 102 191 1.39e-12 70.1
MS.gene90626.t1 MTR_2g079400 34.513 113 68 1 5 111 3 115 5.16e-12 63.5
MS.gene90626.t1 MTR_3g089065 36.709 79 50 0 33 111 73 151 1.11e-11 63.5
MS.gene90626.t1 MTR_4g080800 32.967 91 52 2 160 242 143 232 2.07e-11 65.9
MS.gene90626.t1 MTR_4g085880 36.905 84 50 1 31 111 63 146 7.04e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90626.t1 AT1G04980 70.045 444 120 5 1 432 5 447 0.0 645
MS.gene90626.t1 AT2G32920 70.657 426 117 5 14 432 16 440 0.0 617
MS.gene90626.t1 AT2G47470 36.667 240 132 5 33 267 28 252 1.66e-44 156
MS.gene90626.t1 AT2G47470 53.398 103 43 3 30 128 143 244 4.90e-27 109
MS.gene90626.t1 AT2G47470 39.370 127 71 3 163 284 28 153 1.35e-19 88.6
MS.gene90626.t1 AT2G47470 36.667 240 132 5 33 267 28 252 3.91e-44 157
MS.gene90626.t1 AT2G47470 53.398 103 43 3 30 128 143 244 5.65e-27 110
MS.gene90626.t1 AT2G47470 39.370 127 71 3 163 284 28 153 3.09e-19 89.0
MS.gene90626.t1 AT2G47470 36.667 240 132 5 33 267 28 252 4.00e-44 157
MS.gene90626.t1 AT2G47470 53.398 103 43 3 30 128 143 244 4.83e-27 110
MS.gene90626.t1 AT2G47470 39.370 127 71 3 163 284 28 153 3.48e-19 88.6
MS.gene90626.t1 AT2G47470 36.667 240 132 5 33 267 28 252 6.79e-44 157
MS.gene90626.t1 AT2G47470 53.398 103 43 3 30 128 143 244 6.49e-27 111
MS.gene90626.t1 AT2G47470 39.370 127 71 3 163 284 28 153 3.88e-19 89.0
MS.gene90626.t1 AT3G54960 46.154 91 48 1 30 120 101 190 9.66e-19 89.0
MS.gene90626.t1 AT3G54960 30.556 144 93 3 163 306 104 240 2.71e-15 78.2
MS.gene90626.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.39e-18 88.6
MS.gene90626.t1 AT3G54960 30.556 144 93 3 163 306 104 240 3.82e-15 77.8
MS.gene90626.t1 AT3G54960 37.363 91 49 2 36 126 445 527 3.73e-11 65.5
MS.gene90626.t1 AT1G21750 41.284 109 57 4 30 132 32 139 1.03e-17 85.5
MS.gene90626.t1 AT1G21750 35.849 106 62 3 163 263 35 139 9.62e-15 76.6
MS.gene90626.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.25e-12 70.1
MS.gene90626.t1 AT1G21750 35.577 104 64 2 165 266 381 483 3.70e-11 65.5
MS.gene90626.t1 AT1G21750 41.284 109 57 4 30 132 32 139 1.07e-17 85.5
MS.gene90626.t1 AT1G21750 35.849 106 62 3 163 263 35 139 9.29e-15 76.6
MS.gene90626.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.37e-12 69.7
MS.gene90626.t1 AT5G60640 36.493 211 111 10 30 226 105 306 1.40e-17 85.5
MS.gene90626.t1 AT5G60640 42.424 99 49 4 161 256 106 199 3.99e-15 77.8
MS.gene90626.t1 AT5G60640 26.733 202 130 5 68 259 351 544 8.64e-12 67.4
MS.gene90626.t1 AT5G60640 36.493 211 111 10 30 226 105 306 1.59e-17 85.1
MS.gene90626.t1 AT5G60640 42.424 99 49 4 161 256 106 199 4.98e-15 77.4
MS.gene90626.t1 AT5G60640 26.633 199 129 5 62 252 346 535 3.61e-11 65.5
MS.gene90626.t1 AT5G60640 36.493 211 111 10 30 226 105 306 1.69e-17 85.1
MS.gene90626.t1 AT5G60640 42.424 99 49 4 161 256 106 199 3.11e-15 78.2
MS.gene90626.t1 AT5G60640 34.737 95 60 1 167 259 386 480 3.73e-11 65.5
MS.gene90626.t1 AT1G77510 40.367 109 58 4 30 132 31 138 8.36e-17 82.8
MS.gene90626.t1 AT1G77510 31.169 154 95 4 152 300 23 170 1.57e-16 82.0
MS.gene90626.t1 AT1G77510 26.820 261 163 11 14 259 227 474 5.53e-11 64.7
MS.gene90626.t1 AT1G35620 38.235 102 58 3 30 128 34 133 7.87e-15 76.6
MS.gene90626.t1 AT1G35620 27.897 233 139 8 155 380 29 239 2.61e-14 75.1
MS.gene90626.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.98e-14 69.7
MS.gene90626.t1 AT1G07960 25.439 114 82 2 154 265 21 133 9.82e-14 68.9
MS.gene90626.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.98e-14 69.7
MS.gene90626.t1 AT1G07960 25.439 114 82 2 154 265 21 133 9.82e-14 68.9
MS.gene90626.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.98e-14 69.7
MS.gene90626.t1 AT1G07960 25.439 114 82 2 154 265 21 133 9.82e-14 68.9
MS.gene90626.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.98e-14 69.7
MS.gene90626.t1 AT1G07960 25.439 114 82 2 154 265 21 133 9.82e-14 68.9
MS.gene90626.t1 AT1G43560 37.209 86 54 0 34 119 64 149 1.48e-13 68.9
MS.gene90626.t1 AT1G76760 31.429 105 68 1 34 138 69 169 2.25e-13 68.6
MS.gene90626.t1 AT1G50320 30.000 150 89 4 121 263 30 170 4.24e-12 65.1
MS.gene90626.t1 AT4G03520 36.082 97 59 2 151 245 74 169 4.27e-12 65.1
MS.gene90626.t1 AT3G15360 37.805 82 51 0 30 111 88 169 5.76e-12 65.1
MS.gene90626.t1 AT4G27080 33.663 101 58 2 150 242 133 232 3.52e-11 65.5
MS.gene90626.t1 AT4G27080 33.663 101 58 2 150 242 185 284 3.89e-11 65.5
MS.gene90626.t1 AT1G03680 26.282 156 95 4 110 245 8 163 6.93e-11 61.6

Find 107 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTCCCTTTCAAATTAT+TGG 0.104762 5.1:-66812993 None:intergenic
TTCCCAACAATCTTGGTATT+TGG 0.173156 5.1:+66813406 MS.gene90626:CDS
TTCCTTCCTTCCCGACATTT+TGG 0.184244 5.1:+66813686 MS.gene90626:CDS
CTTAATTCCCTTCAGGAATA+TGG 0.210374 5.1:+66812205 MS.gene90626:intron
GAAGGCAGCTACTGTATTAA+AGG 0.276220 5.1:+66811289 MS.gene90626:CDS
CTCTAGTAACTTCGATGAAT+TGG 0.285509 5.1:+66812765 MS.gene90626:CDS
CTTCAGGAATATGGTATTAG+AGG 0.289766 5.1:+66812214 MS.gene90626:intron
CTATATAGCTCTGTCACTTC+TGG 0.297987 5.1:-66813526 None:intergenic
GTTTCCTTATAGTTCATCTT+TGG 0.305542 5.1:-66814572 None:intergenic
TTTGAAAGGGAAGGTTAAAC+TGG 0.309941 5.1:+66813000 MS.gene90626:CDS
GTAAGGCTCTGACTCCTATA+TGG 0.316417 5.1:+66811264 MS.gene90626:CDS
TGCGATTGGTTTAACATCTC+TGG 0.351595 5.1:-66812293 None:intergenic
CTCAAGGTCTGGCTGCTTAC+CGG 0.356762 5.1:-66814192 None:intergenic
TAGAGGATTTCCAACTATAA+AGG 0.370686 5.1:+66812231 MS.gene90626:CDS
AACACCTTTCTTAACGTTCA+AGG 0.373568 5.1:-66814258 None:intergenic
CGCAGAATATGCACTTCAAC+AGG 0.373604 5.1:+66812312 MS.gene90626:CDS
TCAACCAAAGATGAACTATA+AGG 0.387123 5.1:+66814568 MS.gene90626:CDS
AAAGTTGGTGTTGGTGGGTA+TGG 0.390826 5.1:+66814218 MS.gene90626:CDS
GGGTCTTGAACAGCTATGTA+TGG 0.397598 5.1:+66814162 MS.gene90626:intron
CTAGCACCCTCGTAAGGAAT+TGG 0.409040 5.1:-66813445 None:intergenic
TCAAGGATTCCCAACAATCT+TGG 0.416145 5.1:+66813399 MS.gene90626:CDS
TCCATGGTGCGGGCACTGTA+AGG 0.416505 5.1:+66811247 MS.gene90626:CDS
ACCTTGGACTTGAAGTTGTT+AGG 0.419712 5.1:-66809932 None:intergenic
TTGTTGAATTCTTTGCTCCA+TGG 0.424265 5.1:+66811231 MS.gene90626:CDS
TGCTGATGCTCACCAATCTC+TGG 0.427343 5.1:+66811337 MS.gene90626:CDS
TTAGGAGTGAGTTGAAGAAC+AGG 0.432451 5.1:-66809914 None:intergenic
CTGGCTCCTTGGTAATCAAC+TGG 0.433932 5.1:-66812274 None:intergenic
AGGAATTGGAGTATCTTTAT+CGG 0.435399 5.1:-66813431 None:intergenic
AGAAACCACCGCTTCTTCTT+CGG 0.438238 5.1:+66812732 MS.gene90626:CDS
AGAGAATTTGTGAAAGAAGC+TGG 0.439854 5.1:+66814409 MS.gene90626:intron
GTGTTGTCTATAGGATGTTT+TGG 0.440808 5.1:+66813629 MS.gene90626:intron
TTATCAAAAGCAAAGAACTT+TGG 0.443575 5.1:+66812788 MS.gene90626:CDS
TTTGTCAGTCTCTAATGAGC+AGG 0.447245 5.1:+66813368 MS.gene90626:intron
GGTGCAAACACCTTTATAGT+TGG 0.448420 5.1:-66812241 None:intergenic
CCAACTTTCTGCTCAAGGTC+TGG 0.450805 5.1:-66814203 None:intergenic
AACCGTAGAGAGCGTGAGAA+AGG 0.451953 5.1:-66809883 None:intergenic
TGCTCACCAATCTCTGGCTC+AGG 0.454025 5.1:+66811343 MS.gene90626:CDS
GTTTAACATCTCTGGCTCCT+TGG 0.454708 5.1:-66812285 None:intergenic
ATGAGCAGGTTCAATGTTCA+AGG 0.456443 5.1:+66813382 MS.gene90626:CDS
AATTCTTTGCTCCATGGTGC+GGG 0.458259 5.1:+66811237 MS.gene90626:CDS
TTTGGATTCCAAGGCGGAGG+GGG 0.462438 5.1:+66813704 MS.gene90626:CDS
ATCATTCGCACTAGAGCAGC+TGG 0.462465 5.1:+66813486 MS.gene90626:CDS
TTATAGTTCATCTTTGGTTG+AGG 0.465932 5.1:-66814566 None:intergenic
TGTCAGGTTCTGAATTCAAA+TGG 0.470995 5.1:+66811200 MS.gene90626:intron
CTCCAAATACCAAGATTGTT+GGG 0.472339 5.1:-66813408 None:intergenic
GGAAAACCTGAGCCAGAGAT+TGG 0.473756 5.1:-66811349 None:intergenic
CGGTTAAATGGAAAAGCAAC+AGG 0.474554 5.1:+66812691 MS.gene90626:CDS
GCTCCAAATACCAAGATTGT+TGG 0.479181 5.1:-66813409 None:intergenic
ACGTTCAAGGCTACTAATGC+TGG 0.481617 5.1:-66814245 None:intergenic
ATCCTTTCTCACGCTCTCTA+CGG 0.482498 5.1:+66809881 MS.gene90626:CDS
CAGTTGCAGAGAAGTTCAAA+AGG 0.484219 5.1:+66813755 MS.gene90626:CDS
GGTTCTGTCTTTACAATGGT+GGG 0.490337 5.1:-66814472 None:intergenic
ACTATAAAGGTGTTTGCACC+TGG 0.493971 5.1:+66812244 MS.gene90626:CDS
GCCTTGGAATCCAAAATGTC+GGG 0.495320 5.1:-66813696 None:intergenic
GAACCATGGGATGGAAAAGA+TGG 0.495841 5.1:+66814490 MS.gene90626:CDS
TGGTTCTGTCTTTACAATGG+TGG 0.496152 5.1:-66814473 None:intergenic
AGAGCATCCAATAATTTGAA+AGG 0.498898 5.1:+66812986 MS.gene90626:CDS
CGCCTTGGAATCCAAAATGT+CGG 0.513014 5.1:-66813697 None:intergenic
GAAGCTGGACGTGGAGGCAA+AGG 0.515570 5.1:+66814424 MS.gene90626:CDS
AAGGCAGCTACTGTATTAAA+GGG 0.517489 5.1:+66811290 MS.gene90626:CDS
GAGCATCCAATAATTTGAAA+GGG 0.518744 5.1:+66812987 MS.gene90626:CDS
GTAGCTGCCTTCTCCCATAT+AGG 0.519121 5.1:-66811278 None:intergenic
TGGTGGGAGGAGTGTCACCT+AGG 0.522614 5.1:-66814456 None:intergenic
ATCCAATAATTTGAAAGGGA+AGG 0.529134 5.1:+66812991 MS.gene90626:CDS
TAAGGCTCTGACTCCTATAT+GGG 0.533987 5.1:+66811265 MS.gene90626:CDS
CCAGACCTTGAGCAGAAAGT+TGG 0.535182 5.1:+66814203 MS.gene90626:CDS
GGTGGGAGGAGTGTCACCTA+GGG 0.535529 5.1:-66814455 None:intergenic
GAATTCTTTGCTCCATGGTG+CGG 0.548779 5.1:+66811236 MS.gene90626:CDS
GAGCAGAAAGTTGGTGTTGG+TGG 0.549595 5.1:+66814212 MS.gene90626:CDS
TGAAGTGCATATTCTGCGAT+TGG 0.550530 5.1:-66812307 None:intergenic
TCCTAACAACTTCAAGTCCA+AGG 0.552476 5.1:+66809931 MS.gene90626:CDS
ATCCAAAATGTCGGGAAGGA+AGG 0.552840 5.1:-66813688 None:intergenic
CCATGGTTCTGTCTTTACAA+TGG 0.553296 5.1:-66814476 None:intergenic
GTAGCCTTGAACGTTAAGAA+AGG 0.556407 5.1:+66814254 MS.gene90626:CDS
CTCTAGTGCGAATGATTCGA+TGG 0.558140 5.1:-66813479 None:intergenic
GGTCTTGAACAGCTATGTAT+GGG 0.559621 5.1:+66814163 MS.gene90626:intron
AAAAGATGGAGAAATAATTG+AGG 0.562273 5.1:+66814504 MS.gene90626:CDS
GCCTTACAGTGCCCGCACCA+TGG 0.567839 5.1:-66811248 None:intergenic
CAACTGTTAATAACTGCTGA+AGG 0.571823 5.1:-66813738 None:intergenic
GCAGTTCTAGCACCCTCGTA+AGG 0.576634 5.1:-66813451 None:intergenic
CAACACCAACTTTCTGCTCA+AGG 0.577087 5.1:-66814208 None:intergenic
GCTCCTTGGTAATCAACTGG+TGG 0.580906 5.1:-66812271 None:intergenic
AGCAGAAAGTTGGTGTTGGT+GGG 0.581032 5.1:+66814213 MS.gene90626:CDS
AAGCTGGACGTGGAGGCAAA+GGG 0.583780 5.1:+66814425 MS.gene90626:CDS
TTTGTGAAAGAAGCTGGACG+TGG 0.587104 5.1:+66814415 MS.gene90626:CDS
AGCTATGTATGGGCAGCTGC+CGG 0.590014 5.1:+66814173 MS.gene90626:intron
AGTGAGTTGAAGAACAGGTG+AGG 0.594004 5.1:-66809909 None:intergenic
TCTGACTCCTATATGGGAGA+AGG 0.598675 5.1:+66811271 MS.gene90626:CDS
TCTGTCTTTACAATGGTGGG+AGG 0.605063 5.1:-66814469 None:intergenic
TAGTTCTACCGAAGAAGAAG+CGG 0.621191 5.1:-66812740 None:intergenic
AGTTCAAAAGCACTCTTGAG+AGG 0.621890 5.1:-66814287 None:intergenic
CATTGTAAAGACAGAACCAT+GGG 0.623172 5.1:+66814477 MS.gene90626:CDS
TTCTACCGAAGAAGAAGCGG+TGG 0.624355 5.1:-66812737 None:intergenic
GGCAAAGGGAACTTGCCCCT+AGG 0.627464 5.1:+66814439 MS.gene90626:CDS
CTTGAGCAGAAAGTTGGTGT+TGG 0.628583 5.1:+66814209 MS.gene90626:CDS
TTGAAAGGGAAGGTTAAACT+GGG 0.631529 5.1:+66813001 MS.gene90626:CDS
TGGAATCCAAAATGTCGGGA+AGG 0.635224 5.1:-66813692 None:intergenic
GATACTCCAATTCCTTACGA+GGG 0.636183 5.1:+66813439 MS.gene90626:CDS
TGTTGACTGTGATGCTGACA+AGG 0.636371 5.1:+66813027 MS.gene90626:CDS
GTAAAGACAGAACCATGGGA+TGG 0.640244 5.1:+66814481 MS.gene90626:CDS
TATAGCTCTGTCACTTCTGG+AGG 0.640322 5.1:-66813523 None:intergenic
GTGAAAGAAGCTGGACGTGG+AGG 0.650513 5.1:+66814418 MS.gene90626:CDS
TTAAATGGAAAAGCAACAGG+TGG 0.661631 5.1:+66812694 MS.gene90626:CDS
AGATACTCCAATTCCTTACG+AGG 0.665654 5.1:+66813438 MS.gene90626:CDS
GTGGGAGGAGTGTCACCTAG+GGG 0.673404 5.1:-66814454 None:intergenic
CCATTGTAAAGACAGAACCA+TGG 0.708421 5.1:+66814476 MS.gene90626:CDS
AAACCACCAGTTGATTACCA+AGG 0.716041 5.1:+66812268 MS.gene90626:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTATCTTTATACATA+AGG - chr5.1:66810994-66811013 None:intergenic 10.0%
!! GTAATAAATAATTGAAATAT+AGG - chr5.1:66812847-66812866 None:intergenic 10.0%
!! TAATTTATCTTTATACATAA+GGG - chr5.1:66810993-66811012 None:intergenic 10.0%
!! TATAAATAAATTGAAAAGTA+AGG - chr5.1:66813281-66813300 None:intergenic 10.0%
!!! TCATTTTCTAAAATTATTAT+CGG + chr5.1:66810385-66810404 MS.gene90626:intron 10.0%
!! AAAAATAGACTTACATAATT+TGG - chr5.1:66814316-66814335 None:intergenic 15.0%
!! AATATTTGATTGAAACTTTA+AGG - chr5.1:66812377-66812396 None:intergenic 15.0%
!! AATTTATCTTTATACATAAG+GGG - chr5.1:66810992-66811011 None:intergenic 15.0%
!! AATTTGATTAATAACTTGAA+AGG + chr5.1:66812511-66812530 MS.gene90626:intron 15.0%
!! ATAACACATAATATTCATAA+AGG - chr5.1:66811474-66811493 None:intergenic 15.0%
!! ATTTGATTAATAACTTGAAA+GGG + chr5.1:66812512-66812531 MS.gene90626:intron 15.0%
!! TGAAAAATTACTACAAATAA+AGG + chr5.1:66812486-66812505 MS.gene90626:intron 15.0%
!! TTATACTATTGTATTATGAT+TGG + chr5.1:66811053-66811072 MS.gene90626:intron 15.0%
!!! AAAAATTATTCGTATTTTCT+TGG - chr5.1:66811109-66811128 None:intergenic 15.0%
!!! AAAATTATTCGTATTTTCTT+GGG - chr5.1:66811108-66811127 None:intergenic 15.0%
!!! ATAAAATTGTTGATGTTTTA+GGG + chr5.1:66811858-66811877 MS.gene90626:intron 15.0%
!!! TATAAAATTGTTGATGTTTT+AGG + chr5.1:66811857-66811876 MS.gene90626:intron 15.0%
!! AAATTTAAATACTGAATCTG+AGG - chr5.1:66811393-66811412 None:intergenic 20.0%
!! AAGGAAAAACTTTACATATA+AGG - chr5.1:66811922-66811941 None:intergenic 20.0%
!! ATTGAAAAAAGATTAAACCT+TGG - chr5.1:66809951-66809970 None:intergenic 20.0%
!! CACTAATGTAATTTATTCTT+TGG - chr5.1:66811982-66812001 None:intergenic 20.0%
!! CATGTTTAAATCAAGATAAA+AGG + chr5.1:66813916-66813935 MS.gene90626:intron 20.0%
!! TACTAACTAAACTCAAATTA+AGG + chr5.1:66810861-66810880 MS.gene90626:intron 20.0%
!! TACTTACATGGAAATATAAT+GGG + chr5.1:66814031-66814050 MS.gene90626:intron 20.0%
!! TCAGAATAATATAAACTGAA+AGG - chr5.1:66813336-66813355 None:intergenic 20.0%
!! TTATAGCTTATATGAAAAAC+AGG + chr5.1:66811699-66811718 MS.gene90626:intron 20.0%
!! TTTAACAAACTGTTATTGTT+CGG + chr5.1:66813136-66813155 MS.gene90626:intron 20.0%
!!! AAATTATTCGTATTTTCTTG+GGG - chr5.1:66811107-66811126 None:intergenic 20.0%
!!! AATGGTTTTTTGTTTGAATT+TGG + chr5.1:66814141-66814160 MS.gene90626:intron 20.0%
!!! ATGGTTTTTTGTTTGAATTT+GGG + chr5.1:66814142-66814161 MS.gene90626:intron 20.0%
!!! CTAATTTTATGCTAAATAGT+TGG + chr5.1:66814336-66814355 MS.gene90626:intron 20.0%
!!! GTCTTTTTTTTATTTCTCAA+AGG + chr5.1:66812927-66812946 MS.gene90626:intron 20.0%
!!! TCTTTCAAATTCAACTTTTT+CGG + chr5.1:66813860-66813879 MS.gene90626:intron 20.0%
!!! TTGCAGTTATTTTTAAATTG+CGG + chr5.1:66813998-66814017 MS.gene90626:intron 20.0%
! AAAAGATGGAGAAATAATTG+AGG + chr5.1:66814504-66814523 MS.gene90626:CDS 25.0%
! AAAATACCAGCTAAAAAAGT+GGG - chr5.1:66809997-66810016 None:intergenic 25.0%
! AATATCAATGTATTGGGATT+AGG + chr5.1:66812585-66812604 MS.gene90626:intron 25.0%
! AGTGAGAATATCAATGTATT+GGG + chr5.1:66812579-66812598 MS.gene90626:intron 25.0%
! ATATCAATGTATTGGGATTA+GGG + chr5.1:66812586-66812605 MS.gene90626:intron 25.0%
! CAATAGTATAAAAGACTGTT+TGG - chr5.1:66811044-66811063 None:intergenic 25.0%
! GTACTTACATGGAAATATAA+TGG + chr5.1:66814030-66814049 MS.gene90626:intron 25.0%
! TAGCACTAAAATTTAGTTGA+AGG + chr5.1:66810525-66810544 MS.gene90626:intron 25.0%
! TATAGTTTATTTGCATGTAC+AGG + chr5.1:66812648-66812667 MS.gene90626:intron 25.0%
! TCAGTTTATATTATTCTGAC+AGG + chr5.1:66813337-66813356 MS.gene90626:intron 25.0%
! TTATCAAAAGCAAAGAACTT+TGG + chr5.1:66812788-66812807 MS.gene90626:CDS 25.0%
! TTTATCCTTGAAAACTATCT+GGG + chr5.1:66810054-66810073 MS.gene90626:intron 25.0%
!! AAGTGATTTTATGTTTGGAT+AGG + chr5.1:66810550-66810569 MS.gene90626:intron 25.0%
!! AGGTAAAGTGATTTTATGTT+TGG + chr5.1:66810545-66810564 MS.gene90626:intron 25.0%
!! ATTAAGTTGTTAATCCCAAT+AGG + chr5.1:66811787-66811806 MS.gene90626:intron 25.0%
!! ATTTGATTGAAACTTTAAGG+AGG - chr5.1:66812374-66812393 None:intergenic 25.0%
!! TAGTGTTACAATTTGGATTT+TGG + chr5.1:66812408-66812427 MS.gene90626:intron 25.0%
!! TTAAGTTGTTAATCCCAATA+GGG + chr5.1:66811788-66811807 MS.gene90626:intron 25.0%
!! TTTAGCTGGTATTTTCAAAT+GGG + chr5.1:66810002-66810021 MS.gene90626:intron 25.0%
!! TTTGATTGAAACTTTAAGGA+GGG - chr5.1:66812373-66812392 None:intergenic 25.0%
!! TTTTATCCTTGAAAACTATC+TGG + chr5.1:66810053-66810072 MS.gene90626:intron 25.0%
!!! ATGGTTGATTTTATGATTCT+GGG + chr5.1:66810148-66810167 MS.gene90626:intron 25.0%
!!! TATGGTTGATTTTATGATTC+TGG + chr5.1:66810147-66810166 MS.gene90626:intron 25.0%
!!! TCAAGTAGAATCTATTTTGA+AGG + chr5.1:66810728-66810747 MS.gene90626:intron 25.0%
!!! TTTTAGCTGGTATTTTCAAA+TGG + chr5.1:66810001-66810020 MS.gene90626:intron 25.0%
!!! TTTTTTATTTCTCAAAGGTG+TGG + chr5.1:66812932-66812951 MS.gene90626:intron 25.0%
AAATAGATTCTACTTGAAGC+TGG - chr5.1:66810725-66810744 None:intergenic 30.0%
AACCTTCCCTTTCAAATTAT+TGG - chr5.1:66812996-66813015 None:intergenic 30.0%
AACTCAAATTAAGGTCTGTT+TGG + chr5.1:66810870-66810889 MS.gene90626:intron 30.0%
AATATTATGCCATAAAGCAC+CGG + chr5.1:66810301-66810320 MS.gene90626:intron 30.0%
AATTGTAACACTACACATGT+TGG - chr5.1:66812401-66812420 None:intergenic 30.0%
ACATGTGTAGTGTTACAATT+TGG + chr5.1:66812401-66812420 MS.gene90626:intron 30.0%
AGGAATGAAGAAATGAACAA+TGG - chr5.1:66811373-66811392 None:intergenic 30.0%
ATCCAATAATTTGAAAGGGA+AGG + chr5.1:66812991-66813010 MS.gene90626:CDS 30.0%
ATGCAGATAGCAAAAAATAG+CGG - chr5.1:66813238-66813257 None:intergenic 30.0%
ATTAACTCATGAGTCATAGA+GGG - chr5.1:66813841-66813860 None:intergenic 30.0%
CAGTGAGAATATCAATGTAT+TGG + chr5.1:66812578-66812597 MS.gene90626:intron 30.0%
CCTGTTATGATTTACATGTT+CGG + chr5.1:66812107-66812126 MS.gene90626:intron 30.0%
GAAAATACCAGCTAAAAAAG+TGG - chr5.1:66809998-66810017 None:intergenic 30.0%
GAAATTGTAGCTTCTAATTC+TGG - chr5.1:66810624-66810643 None:intergenic 30.0%
GAACCTGACATTATTCAAAA+TGG - chr5.1:66811190-66811209 None:intergenic 30.0%
GAGCATCCAATAATTTGAAA+GGG + chr5.1:66812987-66813006 MS.gene90626:CDS 30.0%
GATATACAATATGTAGAGCA+TGG - chr5.1:66811900-66811919 None:intergenic 30.0%
GGCAAAATAAATTCTACTCT+AGG + chr5.1:66810749-66810768 MS.gene90626:intron 30.0%
TACAATCAAGTAAAGTTTGC+AGG - chr5.1:66813571-66813590 None:intergenic 30.0%
TAGAGGATTTCCAACTATAA+AGG + chr5.1:66812231-66812250 MS.gene90626:CDS 30.0%
TCGAATAAACCAATCTAAAC+AGG - chr5.1:66811580-66811599 None:intergenic 30.0%
TCTAATACCATATTCCTGAA+GGG - chr5.1:66812215-66812234 None:intergenic 30.0%
TTATAGTTCATCTTTGGTTG+AGG - chr5.1:66814569-66814588 None:intergenic 30.0%
TTATTTGCATGTACAGGTAA+AGG + chr5.1:66812654-66812673 MS.gene90626:intron 30.0%
! AAAATGATGACGTTAGTTAC+AGG - chr5.1:66811825-66811844 None:intergenic 30.0%
! AGAGCATCCAATAATTTGAA+AGG + chr5.1:66812986-66813005 MS.gene90626:CDS 30.0%
! AGATAGATGTCTTCTTTTTG+TGG + chr5.1:66812438-66812457 MS.gene90626:intron 30.0%
! AGGAATTGGAGTATCTTTAT+CGG - chr5.1:66813434-66813453 None:intergenic 30.0%
! ATTTTCTCTTGAAGAACTCA+TGG + chr5.1:66814534-66814553 MS.gene90626:CDS 30.0%
! GTAATGCATCAGGTTTTTAT+GGG + chr5.1:66811162-66811181 MS.gene90626:intron 30.0%
! TAAACATGAGTGTTGTCTAT+AGG + chr5.1:66813620-66813639 MS.gene90626:intron 30.0%
! TATCTAGTTTGTAATGCATC+AGG + chr5.1:66811152-66811171 MS.gene90626:intron 30.0%
! TGTAATGCATCAGGTTTTTA+TGG + chr5.1:66811161-66811180 MS.gene90626:intron 30.0%
! TGTTGATTAGTGTGTGAATA+TGG + chr5.1:66810129-66810148 MS.gene90626:intron 30.0%
! TTGGTTGCTTTACATAGAAT+GGG - chr5.1:66811963-66811982 None:intergenic 30.0%
! TTTGGTTGCTTTACATAGAA+TGG - chr5.1:66811964-66811983 None:intergenic 30.0%
! TTTTATGATTCTGGGTTTTG+TGG + chr5.1:66810156-66810175 MS.gene90626:intron 30.0%
! TTTTCTCTTGAAGAACTCAT+GGG + chr5.1:66814535-66814554 MS.gene90626:CDS 30.0%
!! GAAATATAATGGGTTCTCAT+TGG + chr5.1:66814041-66814060 MS.gene90626:intron 30.0%
!!! CAGGAGCTAATTTTTTACAA+TGG - chr5.1:66812958-66812977 None:intergenic 30.0%
!!! TGTTTTTTTACTTGCCTGTA+AGG - chr5.1:66813784-66813803 None:intergenic 30.0%
AACACCTTTCTTAACGTTCA+AGG - chr5.1:66814261-66814280 None:intergenic 35.0%
AAGGCAGCTACTGTATTAAA+GGG + chr5.1:66811290-66811309 MS.gene90626:CDS 35.0%
AAGTACCTGTTAGACAGTTA+GGG + chr5.1:66811615-66811634 MS.gene90626:intron 35.0%
AAGTAGATTCTACTTGAAGC+TGG - chr5.1:66810646-66810665 None:intergenic 35.0%
ACACAACATCTATGAAAGCA+CGG - chr5.1:66810446-66810465 None:intergenic 35.0%
AGAGAATTTGTGAAAGAAGC+TGG + chr5.1:66814409-66814428 MS.gene90626:intron 35.0%
CAACTGTTAATAACTGCTGA+AGG - chr5.1:66813741-66813760 None:intergenic 35.0%
CACTGACACATTTGTTTACA+TGG + chr5.1:66810355-66810374 MS.gene90626:intron 35.0%
CATAAGGGGAAAACAACTTA+TGG - chr5.1:66810978-66810997 None:intergenic 35.0%
CATTGTAAAGACAGAACCAT+GGG + chr5.1:66814477-66814496 MS.gene90626:CDS 35.0%
CATTTCTGTACAATGTACAC+TGG + chr5.1:66811505-66811524 MS.gene90626:intron 35.0%
CCGAACATGTAAATCATAAC+AGG - chr5.1:66812110-66812129 None:intergenic 35.0%
CTACTCTAGGTGATTCATTA+AGG + chr5.1:66810762-66810781 MS.gene90626:intron 35.0%
CTCCAAATACCAAGATTGTT+GGG - chr5.1:66813411-66813430 None:intergenic 35.0%
CTCTAATACCATATTCCTGA+AGG - chr5.1:66812216-66812235 None:intergenic 35.0%
CTCTAGTAACTTCGATGAAT+TGG + chr5.1:66812765-66812784 MS.gene90626:CDS 35.0%
CTGGAAATACATACCTTTGA+TGG + chr5.1:66811524-66811543 MS.gene90626:intron 35.0%
CTTAATTCCCTTCAGGAATA+TGG + chr5.1:66812205-66812224 MS.gene90626:intron 35.0%
CTTCAGGAATATGGTATTAG+AGG + chr5.1:66812214-66812233 MS.gene90626:intron 35.0%
CTTTGTTGACGAATGCTTAA+TGG + chr5.1:66814123-66814142 MS.gene90626:intron 35.0%
GAATCAGTTTCGTCAAATAG+CGG + chr5.1:66813096-66813115 MS.gene90626:intron 35.0%
GATAGGTTCATGTAAAAGTG+AGG + chr5.1:66810567-66810586 MS.gene90626:intron 35.0%
GATTAACTCATGAGTCATAG+AGG - chr5.1:66813842-66813861 None:intergenic 35.0%
GCTTCAAGTAGAATCTACTT+TGG + chr5.1:66810646-66810665 MS.gene90626:intron 35.0%
GTAAAAAATTAGCTCCTGAG+TGG + chr5.1:66812960-66812979 MS.gene90626:CDS 35.0%
GTAGAATTACATGTTCAGTC+AGG - chr5.1:66812869-66812888 None:intergenic 35.0%
GTTTGATGAAGATGCATTGT+TGG - chr5.1:66814091-66814110 None:intergenic 35.0%
TAAGTACCTGTTAGACAGTT+AGG + chr5.1:66811614-66811633 MS.gene90626:intron 35.0%
TACAATATGTAGAGCATGGT+AGG - chr5.1:66811896-66811915 None:intergenic 35.0%
TCAAGTAGAATCTACTTTGG+AGG + chr5.1:66810649-66810668 MS.gene90626:intron 35.0%
TTAAATGGAAAAGCAACAGG+TGG + chr5.1:66812694-66812713 MS.gene90626:CDS 35.0%
TTACATAGAATGGGAAGACT+AGG - chr5.1:66811954-66811973 None:intergenic 35.0%
TTCCCAACAATCTTGGTATT+TGG + chr5.1:66813406-66813425 MS.gene90626:CDS 35.0%
TTGAAAGGGAAGGTTAAACT+GGG + chr5.1:66813001-66813020 MS.gene90626:CDS 35.0%
TTGTTGAATTCTTTGCTCCA+TGG + chr5.1:66811231-66811250 MS.gene90626:CDS 35.0%
TTTGAAAGGGAAGGTTAAAC+TGG + chr5.1:66813000-66813019 MS.gene90626:CDS 35.0%
! AAACACCCAGATAGTTTTCA+AGG - chr5.1:66810062-66810081 None:intergenic 35.0%
! GGTATTGAACCTGTTTAGAT+TGG + chr5.1:66811568-66811587 MS.gene90626:intron 35.0%
! GTCTTTTCTTAATTCCCTTC+AGG + chr5.1:66812198-66812217 MS.gene90626:intron 35.0%
! GTGTTGTCTATAGGATGTTT+TGG + chr5.1:66813629-66813648 MS.gene90626:intron 35.0%
! TATTCGTATTTTCTTGGGGA+GGG - chr5.1:66811103-66811122 None:intergenic 35.0%
! TTATTCGTATTTTCTTGGGG+AGG - chr5.1:66811104-66811123 None:intergenic 35.0%
! TTGTAGAATTTTTCGCACCT+TGG + chr5.1:66812812-66812831 MS.gene90626:CDS 35.0%
! TTTGCTATGTTGCTGTATTG+TGG + chr5.1:66810094-66810113 MS.gene90626:intron 35.0%
!! AATATAGGAAGTACTCACCA+AGG - chr5.1:66812832-66812851 None:intergenic 35.0%
!! CTTTTGAAGGAACGGTTAAA+TGG + chr5.1:66812679-66812698 MS.gene90626:CDS 35.0%
!! TAAAGGCTCTTTTGAAGGAA+CGG + chr5.1:66812671-66812690 MS.gene90626:CDS 35.0%
!! TGTCAGGTTCTGAATTCAAA+TGG + chr5.1:66811200-66811219 MS.gene90626:intron 35.0%
!!! GATGTTTTGGAAGAGAAATG+TGG + chr5.1:66813642-66813661 MS.gene90626:CDS 35.0%
!!! GTGCCATTTTGAATAATGTC+AGG + chr5.1:66811184-66811203 MS.gene90626:intron 35.0%
AAAAAAGTGGGATCACGAAC+TGG - chr5.1:66809985-66810004 None:intergenic 40.0%
AAAAAGTGGGATCACGAACT+GGG - chr5.1:66809984-66810003 None:intergenic 40.0%
AAACCACCAGTTGATTACCA+AGG + chr5.1:66812268-66812287 MS.gene90626:CDS 40.0%
AAATGTGTCAGTGTCTGTGT+CGG - chr5.1:66810348-66810367 None:intergenic 40.0%
ACAAATGTCATGTAAGCGAC+AGG - chr5.1:66812038-66812057 None:intergenic 40.0%
ACCTTGGACTTGAAGTTGTT+AGG - chr5.1:66809935-66809954 None:intergenic 40.0%
ACTCTTCTTGCAACATCACT+TGG + chr5.1:66812537-66812556 MS.gene90626:intron 40.0%
ACTTTCCCTAACTGTCTAAC+AGG - chr5.1:66811623-66811642 None:intergenic 40.0%
AGATACTCCAATTCCTTACG+AGG + chr5.1:66813438-66813457 MS.gene90626:CDS 40.0%
AGTTCAAAAGGAGTCCTTAC+AGG + chr5.1:66813767-66813786 MS.gene90626:intron 40.0%
ATGAGCAGGTTCAATGTTCA+AGG + chr5.1:66813382-66813401 MS.gene90626:CDS 40.0%
ATGCACTTCAACAGGTTTGT+TGG + chr5.1:66812320-66812339 MS.gene90626:intron 40.0%
ATGCTGACAAGGTAAGCTTA+TGG + chr5.1:66813038-66813057 MS.gene90626:intron 40.0%
CAGTTGCAGAGAAGTTCAAA+AGG + chr5.1:66813755-66813774 MS.gene90626:CDS 40.0%
CCATTGTAAAGACAGAACCA+TGG + chr5.1:66814476-66814495 MS.gene90626:CDS 40.0%
CGGTTAAATGGAAAAGCAAC+AGG + chr5.1:66812691-66812710 MS.gene90626:CDS 40.0%
GAAGACTAGGAATGTAACGA+AGG - chr5.1:66811941-66811960 None:intergenic 40.0%
GAAGGCAGCTACTGTATTAA+AGG + chr5.1:66811289-66811308 MS.gene90626:CDS 40.0%
GATACTCCAATTCCTTACGA+GGG + chr5.1:66813439-66813458 MS.gene90626:CDS 40.0%
GCTCCAAATACCAAGATTGT+TGG - chr5.1:66813412-66813431 None:intergenic 40.0%
GGTCTTGAACAGCTATGTAT+GGG + chr5.1:66814163-66814182 MS.gene90626:intron 40.0%
GGTGCAAACACCTTTATAGT+TGG - chr5.1:66812244-66812263 None:intergenic 40.0%
GGTTCTGTCTTTACAATGGT+GGG - chr5.1:66814475-66814494 None:intergenic 40.0%
GGTTGCAAAGTGTACTTACA+TGG + chr5.1:66814019-66814038 MS.gene90626:intron 40.0%
GTTGTGTATGTTTCGTTCTG+TGG + chr5.1:66810459-66810478 MS.gene90626:intron 40.0%
TCAAGGATTCCCAACAATCT+TGG + chr5.1:66813399-66813418 MS.gene90626:CDS 40.0%
TCCTAACAACTTCAAGTCCA+AGG + chr5.1:66809931-66809950 MS.gene90626:CDS 40.0%
TGAAGTGCATATTCTGCGAT+TGG - chr5.1:66812310-66812329 None:intergenic 40.0%
TGCTATAGTGCTTCTATAGC+TGG - chr5.1:66813194-66813213 None:intergenic 40.0%
TTTGTCAGTCTCTAATGAGC+AGG + chr5.1:66813368-66813387 MS.gene90626:intron 40.0%
! ACAGGTAAAGGCTCTTTTGA+AGG + chr5.1:66812666-66812685 MS.gene90626:intron 40.0%
! ATGATGACGTTAGTTACAGG+AGG - chr5.1:66811822-66811841 None:intergenic 40.0%
! CCATGGTTCTGTCTTTACAA+TGG - chr5.1:66814479-66814498 None:intergenic 40.0%
! CTATATAGCTCTGTCACTTC+TGG - chr5.1:66813529-66813548 None:intergenic 40.0%
! CTATCTGGGTGTTTTGTGTT+TGG + chr5.1:66810068-66810087 MS.gene90626:intron 40.0%
! GTAGCCTTGAACGTTAAGAA+AGG + chr5.1:66814254-66814273 MS.gene90626:CDS 40.0%
! TAAGGCTCTGACTCCTATAT+GGG + chr5.1:66811265-66811284 MS.gene90626:CDS 40.0%
! TAATCAACTGGTGGTTTTCC+AGG - chr5.1:66812265-66812284 None:intergenic 40.0%
! TACATACCTTTGATGGACCA+CGG + chr5.1:66811531-66811550 MS.gene90626:intron 40.0%
! TAGTTCTACCGAAGAAGAAG+CGG - chr5.1:66812743-66812762 None:intergenic 40.0%
! TGGTTCTGTCTTTACAATGG+TGG - chr5.1:66814476-66814495 None:intergenic 40.0%
! TTAGGAGTGAGTTGAAGAAC+AGG - chr5.1:66809917-66809936 None:intergenic 40.0%
!! ACTATAAAGGTGTTTGCACC+TGG + chr5.1:66812244-66812263 MS.gene90626:CDS 40.0%
!! AGTTCAAAAGCACTCTTGAG+AGG - chr5.1:66814290-66814309 None:intergenic 40.0%
!! GGTTTGTTGGAATCTCTTCT+TGG + chr5.1:66812333-66812352 MS.gene90626:intron 40.0%
!! TGCGATTGGTTTAACATCTC+TGG - chr5.1:66812296-66812315 None:intergenic 40.0%
AATTCTTTGCTCCATGGTGC+GGG + chr5.1:66811237-66811256 MS.gene90626:CDS 45.0%
ACGTTCAAGGCTACTAATGC+TGG - chr5.1:66814248-66814267 None:intergenic 45.0%
AGAAACCACCGCTTCTTCTT+CGG + chr5.1:66812732-66812751 MS.gene90626:CDS 45.0%
ATCCAAAATGTCGGGAAGGA+AGG - chr5.1:66813691-66813710 None:intergenic 45.0%
ATCCTTTCTCACGCTCTCTA+CGG + chr5.1:66809881-66809900 MS.gene90626:CDS 45.0%
CAACACCAACTTTCTGCTCA+AGG - chr5.1:66814211-66814230 None:intergenic 45.0%
CGCAGAATATGCACTTCAAC+AGG + chr5.1:66812312-66812331 MS.gene90626:CDS 45.0%
CGCCTTGGAATCCAAAATGT+CGG - chr5.1:66813700-66813719 None:intergenic 45.0%
CTCTAGTGCGAATGATTCGA+TGG - chr5.1:66813482-66813501 None:intergenic 45.0%
GAACCATGGGATGGAAAAGA+TGG + chr5.1:66814490-66814509 MS.gene90626:CDS 45.0%
GAATTCTTTGCTCCATGGTG+CGG + chr5.1:66811236-66811255 MS.gene90626:CDS 45.0%
GCCTTGGAATCCAAAATGTC+GGG - chr5.1:66813699-66813718 None:intergenic 45.0%
GGGTCTTGAACAGCTATGTA+TGG + chr5.1:66814162-66814181 MS.gene90626:intron 45.0%
GTAAAGACAGAACCATGGGA+TGG + chr5.1:66814481-66814500 MS.gene90626:CDS 45.0%
GTAGAGCATGGTAGGATCTT+GGG - chr5.1:66811888-66811907 None:intergenic 45.0%
GTCAGTGTCCATGTCGTATT+AGG + chr5.1:66810417-66810436 MS.gene90626:intron 45.0%
TCTGACTCCTATATGGGAGA+AGG + chr5.1:66811271-66811290 MS.gene90626:CDS 45.0%
TGGAATCCAAAATGTCGGGA+AGG - chr5.1:66813695-66813714 None:intergenic 45.0%
TGTAGAGCATGGTAGGATCT+TGG - chr5.1:66811889-66811908 None:intergenic 45.0%
TTTGTGAAAGAAGCTGGACG+TGG + chr5.1:66814415-66814434 MS.gene90626:CDS 45.0%
! AGTGAGTTGAAGAACAGGTG+AGG - chr5.1:66809912-66809931 None:intergenic 45.0%
! ATTTTGGATTCCAAGGCGGA+GGG + chr5.1:66813702-66813721 MS.gene90626:CDS 45.0%
! CGACATTTTGGATTCCAAGG+CGG + chr5.1:66813698-66813717 MS.gene90626:CDS 45.0%
! GAAGCACTATAGCACTGTAG+TGG + chr5.1:66813200-66813219 MS.gene90626:intron 45.0%
! GTAAGGCTCTGACTCCTATA+TGG + chr5.1:66811264-66811283 MS.gene90626:CDS 45.0%
! GTTTAACATCTCTGGCTCCT+TGG - chr5.1:66812288-66812307 None:intergenic 45.0%
! TATAGCTCTGTCACTTCTGG+AGG - chr5.1:66813526-66813545 None:intergenic 45.0%
! TCCCGACATTTTGGATTCCA+AGG + chr5.1:66813695-66813714 MS.gene90626:CDS 45.0%
! TCTCCATCTTTTCCATCCCA+TGG - chr5.1:66814496-66814515 None:intergenic 45.0%
! TCTGTCTTTACAATGGTGGG+AGG - chr5.1:66814472-66814491 None:intergenic 45.0%
! TGTTGACTGTGATGCTGACA+AGG + chr5.1:66813027-66813046 MS.gene90626:CDS 45.0%
! TTCCTTCCTTCCCGACATTT+TGG + chr5.1:66813686-66813705 MS.gene90626:CDS 45.0%
! TTGGATGCTCTTTTCCACTC+AGG - chr5.1:66812977-66812996 None:intergenic 45.0%
!! AAAGTTGGTGTTGGTGGGTA+TGG + chr5.1:66814218-66814237 MS.gene90626:CDS 45.0%
!! AGCAGAAAGTTGGTGTTGGT+GGG + chr5.1:66814213-66814232 MS.gene90626:CDS 45.0%
!! CTTGAGCAGAAAGTTGGTGT+TGG + chr5.1:66814209-66814228 MS.gene90626:CDS 45.0%
!!! CGTGATCCCACTTTTTTAGC+TGG + chr5.1:66809988-66810007 MS.gene90626:intron 45.0%
ACCACGGACGATGCAAAACA+TGG + chr5.1:66811547-66811566 MS.gene90626:intron 50.0%
ACGACATGGACACTGACATG+TGG - chr5.1:66810414-66810433 None:intergenic 50.0%
AGGAGGACACTTGACCCTAT+TGG - chr5.1:66811805-66811824 None:intergenic 50.0%
ATCATTCGCACTAGAGCAGC+TGG + chr5.1:66813486-66813505 MS.gene90626:CDS 50.0%
CACGGACACCTAATACGACA+TGG - chr5.1:66810428-66810447 None:intergenic 50.0%
CCAACTTTCTGCTCAAGGTC+TGG - chr5.1:66814206-66814225 None:intergenic 50.0%
CCAGACCTTGAGCAGAAAGT+TGG + chr5.1:66814203-66814222 MS.gene90626:CDS 50.0%
CTAGCACCCTCGTAAGGAAT+TGG - chr5.1:66813448-66813467 None:intergenic 50.0%
GCAGGAGAACAAACACTCAC+TGG - chr5.1:66813553-66813572 None:intergenic 50.0%
GGAAAACCTGAGCCAGAGAT+TGG - chr5.1:66811352-66811371 None:intergenic 50.0%
GGAGGACACTTGACCCTATT+GGG - chr5.1:66811804-66811823 None:intergenic 50.0%
GTAGCTGCCTTCTCCCATAT+AGG - chr5.1:66811281-66811300 None:intergenic 50.0%
TGCTGATGCTCACCAATCTC+TGG + chr5.1:66811337-66811356 MS.gene90626:CDS 50.0%
TTCTACCGAAGAAGAAGCGG+TGG - chr5.1:66812740-66812759 None:intergenic 50.0%
! AACCGTAGAGAGCGTGAGAA+AGG - chr5.1:66809886-66809905 None:intergenic 50.0%
! ACCATGTTTTGCATCGTCCG+TGG - chr5.1:66811551-66811570 None:intergenic 50.0%
! CATTTTGGATTCCAAGGCGG+AGG + chr5.1:66813701-66813720 MS.gene90626:CDS 50.0%
! CTGGCTCCTTGGTAATCAAC+TGG - chr5.1:66812277-66812296 None:intergenic 50.0%
! GCTCCTTGGTAATCAACTGG+TGG - chr5.1:66812274-66812293 None:intergenic 50.0%
! TTTTGGATTCCAAGGCGGAG+GGG + chr5.1:66813703-66813722 MS.gene90626:CDS 50.0%
!! CATAAAGCACCGGCACTCTT+CGG + chr5.1:66810311-66810330 MS.gene90626:intron 50.0%
!! GAGCAGAAAGTTGGTGTTGG+TGG + chr5.1:66814212-66814231 MS.gene90626:CDS 50.0%
AAGCTGGACGTGGAGGCAAA+GGG + chr5.1:66814425-66814444 MS.gene90626:CDS 55.0%
AGCTATGTATGGGCAGCTGC+CGG + chr5.1:66814173-66814192 MS.gene90626:intron 55.0%
CATCGTCCGTGGTCCATCAA+AGG - chr5.1:66811540-66811559 None:intergenic 55.0%
CTCAAGGTCTGGCTGCTTAC+CGG - chr5.1:66814195-66814214 None:intergenic 55.0%
GTGAAAGAAGCTGGACGTGG+AGG + chr5.1:66814418-66814437 MS.gene90626:CDS 55.0%
TTTGGATTCCAAGGCGGAGG+GGG + chr5.1:66813704-66813723 MS.gene90626:CDS 55.0%
! ACGCCTAATCCGAAGAGTGC+CGG - chr5.1:66810323-66810342 None:intergenic 55.0%
! GCAGTTCTAGCACCCTCGTA+AGG - chr5.1:66813454-66813473 None:intergenic 55.0%
! TGCTCACCAATCTCTGGCTC+AGG + chr5.1:66811343-66811362 MS.gene90626:CDS 55.0%
!! CGAAGAGTGCCGGTGCTTTA+TGG - chr5.1:66810313-66810332 None:intergenic 55.0%
GAAGCTGGACGTGGAGGCAA+AGG + chr5.1:66814424-66814443 MS.gene90626:CDS 60.0%
GGCAAAGGGAACTTGCCCCT+AGG + chr5.1:66814439-66814458 MS.gene90626:CDS 60.0%
! GCACCGGCACTCTTCGGATT+AGG + chr5.1:66810317-66810336 MS.gene90626:intron 60.0%
! TCCATGGTGCGGGCACTGTA+AGG + chr5.1:66811247-66811266 MS.gene90626:CDS 60.0%
!! GGTGGGAGGAGTGTCACCTA+GGG - chr5.1:66814458-66814477 None:intergenic 60.0%
!! GTGGGAGGAGTGTCACCTAG+GGG - chr5.1:66814457-66814476 None:intergenic 60.0%
!! TGGTGGGAGGAGTGTCACCT+AGG - chr5.1:66814459-66814478 None:intergenic 60.0%
GCCTTACAGTGCCCGCACCA+TGG - chr5.1:66811251-66811270 None:intergenic 65.0%
! CTGTTTCTCCCCCTCCGCCT+TGG - chr5.1:66813715-66813734 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 66809830 66814588 66809830 ID=MS.gene90626
chr5.1 mRNA 66809830 66814588 66809830 ID=MS.gene90626.t1;Parent=MS.gene90626
chr5.1 exon 66809830 66809952 66809830 ID=MS.gene90626.t1.exon1;Parent=MS.gene90626.t1
chr5.1 CDS 66809830 66809952 66809830 ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1
chr5.1 exon 66811206 66811364 66811206 ID=MS.gene90626.t1.exon2;Parent=MS.gene90626.t1
chr5.1 CDS 66811206 66811364 66811206 ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1
chr5.1 exon 66812220 66812333 66812220 ID=MS.gene90626.t1.exon3;Parent=MS.gene90626.t1
chr5.1 CDS 66812220 66812333 66812220 ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1
chr5.1 exon 66812670 66812833 66812670 ID=MS.gene90626.t1.exon4;Parent=MS.gene90626.t1
chr5.1 CDS 66812670 66812833 66812670 ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1
chr5.1 exon 66812949 66813048 66812949 ID=MS.gene90626.t1.exon5;Parent=MS.gene90626.t1
chr5.1 CDS 66812949 66813048 66812949 ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1
chr5.1 exon 66813376 66813552 66813376 ID=MS.gene90626.t1.exon6;Parent=MS.gene90626.t1
chr5.1 CDS 66813376 66813552 66813376 ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1
chr5.1 exon 66813642 66813778 66813642 ID=MS.gene90626.t1.exon7;Parent=MS.gene90626.t1
chr5.1 CDS 66813642 66813778 66813642 ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1
chr5.1 exon 66814175 66814321 66814175 ID=MS.gene90626.t1.exon8;Parent=MS.gene90626.t1
chr5.1 CDS 66814175 66814321 66814175 ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1
chr5.1 exon 66814411 66814588 66814411 ID=MS.gene90626.t1.exon9;Parent=MS.gene90626.t1
chr5.1 CDS 66814411 66814588 66814411 ID=cds.MS.gene90626.t1;Parent=MS.gene90626.t1
Gene Sequence

>MS.gene90626

ATGGCGAAACTCTCATTCATTGCTGTAACTATCTTTCTCTTCAACAATCTCATCCTTTCTCACGCTCTCTACGGTTCTTCCTCACCTGTTCTTCAACTCACTCCTAACAACTTCAAGTCCAAGGTTTAATCTTTTTTCAATTTTTCATTGACCCAGTTCGTGATCCCACTTTTTTAGCTGGTATTTTCAAATGGGTATTGCGTAGAATTGTTAAATTTTGTAGTTTTATCCTTGAAAACTATCTGGGTGTTTTGTGTTTGGAATTTTGCTATGTTGCTGTATTGTGGTGTTTCTGTTTTTGTTGATTAGTGTGTGAATATGGTTGATTTTATGATTCTGGGTTTTGTGGAATTACAATTTTTTGATTTGTGTGATATATATAATGTAACAAATCTGTTGATTCATACTATTATGCAAGTATGTGTTAATGTTGTGTTTTATCATCTGAAAAGATCTTTTAATTCATGTGTTAATATTATGCCATAAAGCACCGGCACTCTTCGGATTAGGCGTGTCCGACACAGACACTGACACATTTGTTTACATGGAATTATGTCATTTTCTAAAATTATTATCGGTTTCCACATGTCAGTGTCCATGTCGTATTAGGTGTCCGTGCTTTCATAGATGTTGTGTATGTTTCGTTCTGTGGTGAGAAAAATTGATTTTGAAAGAATTGATTATGTGAAATTGATTAGCACTAAAATTTAGTTGAAGGTAAAGTGATTTTATGTTTGGATAGGTTCATGTAAAAGTGAGGTGAACAATAAATTTGAGTGTAAAAAACAATACCAGAATTAGAAGCTACAATTTCCAGCTTCAAGTAGAATCTACTTTGGAGGCAAAATCAATTATACTCTAAAAAAAATTCTAGAATTAGAAGCTACAATTTCCAGCTTCAAGTAGAATCTATTTTGAAGGCAAAATAAATTCTACTCTAGGTGATTCATTAAGGACGTTTCGATTTAATCATAACTACTTCTAAAGTCACACATATGATTGCATGTGATTCATTGCTGTAAATATTTTTATACTAACTAAACTCAAATTAAGGTCTGTTTGGATTGTTTTATATGAACTTATCTATTTACATTAGCACTTATAAGACTGTTTGAGAGAACTTACGAAAATTGCTCATGACGTGTCCATAAGTTGTTTTCCCCTTATGTATAAAGATAAATTATACATATGCACTTAATTAAGTTGTTTATCCAAACAGTCTTTTATACTATTGTATTATGATTGGACTTTGATATGATGAAATACGAGTCCCTCCCCAAGAAAATACGAATAATTTTTATGAGTTAGCTTTTTCTTTGCTTTATCTAGTTTGTAATGCATCAGGTTTTTATGGGTGCCATTTTGAATAATGTCAGGTTCTGAATTCAAATGGAGTTGTTCTTGTTGAATTCTTTGCTCCATGGTGCGGGCACTGTAAGGCTCTGACTCCTATATGGGAGAAGGCAGCTACTGTATTAAAGGGTGTAGTTACTGTTGCAGCACTTGATGCTGATGCTCACCAATCTCTGGCTCAGGTTTTCCATTGTTCATTTCTTCATTCCTCAGATTCAGTATTTAAATTTAAATGACATATATTAAAGTAAGACTATGCTGCATGTGTTGTTTTCATCTTACATTTAACCTTTATGAATATTATGTGTTATTATATGTTTCACATTTCTGTACAATGTACACTGGAAATACATACCTTTGATGGACCACGGACGATGCAAAACATGGTATTGAACCTGTTTAGATTGGTTTATTCGAGTTAACTATTGACATAAGTACCTGTTAGACAGTTAGGGAAAGTTTATGAAAACTGTGTATGACATGTTCATAAGCTCTATGATAACTTATGAAAACAGCTTATAGCTTATATGAAAAACAGGTTGAATTTGTTTTATCTTTTTTATAGAAATAGTTTCTACATAAACACTTGTATGATAAGTGCTTAATTAAGTTGTTAATCCCAATAGGGTCAAGTGTCCTCCTGTAACTAACGTCATCATTTTGATCATTTTAGATATAAAATTGTTGATGTTTTAGGGCATGCCCAAGATCCTACCATGCTCTACATATTGTATATCCTTATATGTAAAGTTTTTCCTTCGTTACATTCCTAGTCTTCCCATTCTATGTAAAGCAACCAAAGAATAAATTACATTAGTGAATAAGAATATGTTTGTTGAGATTATTTATTTTCCTGTCGCTTACATGACATTTGTTATTGTTTGCATGATGAAATATTTATTCATCTAATGCTTGTATCTTTCTCCTGTTATGATTTACATGTTCGGCTATTTTCTTCATTTATTTTATTATAACTGTAAATTGCAAAATTTGAAAAAATCATTTAGATTTTTGTGTCTTTTCTTAATTCCCTTCAGGAATATGGTATTAGAGGATTTCCAACTATAAAGGTGTTTGCACCTGGAAAACCACCAGTTGATTACCAAGGAGCCAGAGATGTTAAACCAATCGCAGAATATGCACTTCAACAGGTTTGTTGGAATCTCTTCTTGGATGTTTTAACATTTCCCTCCTTAAAGTTTCAATCAAATATTTCCAACATGTGTAGTGTTACAATTTGGATTTTGGATAGAGTAGATAGATGTCTTCTTTTTGTGGAAAACAACAATTTCTTGTACTTTTATGAAAAATTACTACAAATAAAGGAGAATTTGATTAATAACTTGAAAGGGAAACTCTTCTTGCAACATCACTTGGTAGTGTACAAAATTTCAGCAGTGAGAATATCAATGTATTGGGATTAGGGTTGACTGTTCAGTGACTACTGCTTGTAATATTGTGTGATTATAGTTTATTTGCATGTACAGGTAAAGGCTCTTTTGAAGGAACGGTTAAATGGAAAAGCAACAGGTGGATCAAATGAAAAAAAAGAAACCACCGCTTCTTCTTCGGTAGAACTAAACTCTAGTAACTTCGATGAATTGGTTATCAAAAGCAAAGAACTTTGGATTGTAGAATTTTTCGCACCTTGGTGAGTACTTCCTATATTTCAATTATTTATTACCTGACTGAACATGTAATTCTACTTTCAGATTTGCAGTTTCTAAATCTAATAACAACTTTTGTCTTTTTTTTATTTCTCAAAGGTGTGGCCATTGTAAAAAATTAGCTCCTGAGTGGAAAAGAGCATCCAATAATTTGAAAGGGAAGGTTAAACTGGGTCATGTTGACTGTGATGCTGACAAGGTAAGCTTATGGAGTATATCTAATCTCATAGTAGTTAATAAAAATTAGAATCAGTTTCGTCAAATAGCGGCTATAGCGTAGCAGAATTTTAACAAACTGTTATTGTTCGGTGATATACAATTTAGCAAGTGTTGTCAAATAGCCAGCTATAGAAGCACTATAGCACTGTAGTGGAACTTTAACAAACCGCTATTTTTTGCTATCTGCATGATGATCAAGATGATCTCAACCTTACTTTTCAATTTATTTATATTATTAGTGTTCAATATTAAGCTTTTATTCTGCCTTTCAGTTTATATTATTCTGACAGGATAATTTTTTTGTCAGTCTCTAATGAGCAGGTTCAATGTTCAAGGATTCCCAACAATCTTGGTATTTGGAGCCGATAAAGATACTCCAATTCCTTACGAGGGTGCTAGAACTGCATCAGCCATCGAATCATTCGCACTAGAGCAGCTGGAAACAAATGTTGCTCCTCCAGAAGTGACAGAGCTATATAGTCCAGTGAGTGTTTGTTCTCCTGCAAACTTTACTTGATTGTACACTGATTTGAAAGAAAGAATATAAGATATAAACATGAGTGTTGTCTATAGGATGTTTTGGAAGAGAAATGTGGTTCTGCTGCTATCTGTTTTGTTTCCTTCCTTCCCGACATTTTGGATTCCAAGGCGGAGGGGGAGAAACAGATACCTTCAGCAGTTATTAACAGTTGCAGAGAAGTTCAAAAGGAGTCCTTACAGGCAAGTAAAAAAACATTTTGCTTACATTTCATAGTTCATACTTTCACATCCCTCTATGACTCATGAGTTAATCTTTCAAATTCAACTTTTTCGGTTTATACTATTGATTTTGTAAATGCTTTACAGACATGTTTAAATCAAGATAAAAGGCAACATGCATTGTCAGTGTAAACTAGTTTTACACTGACGTTCAATGTGAATCGTGCATGTTGCAGTTATTTTTAAATTGCGGTTGCAAAGTGTACTTACATGGAAATATAATGGGTTCTCATTGGATATCAGTGTAAAACTATTTTGCACCAACAATGCATCTTCATCAAACTCTTAAATCAGTCTTTGTTGACGAATGCTTAATGGTTTTTTGTTTGAATTTGGGTCTTGAACAGCTATGTATGGGCAGCTGCCGGTAAGCAGCCAGACCTTGAGCAGAAAGTTGGTGTTGGTGGGTATGGTTATCCAGCATTAGTAGCCTTGAACGTTAAGAAAGGTGTTTATGCTCCTCTCAAGAGTGCTTTTGAACTTGACCAAATTATGTAAGTCTATTTTTCTAATTTTATGCTAAATAGTTGGCGCTTTACTGAAGCAAACAAGTACTTGAACTTTATTGATTTGTTTTCTTCAGAGAATTTGTGAAAGAAGCTGGACGTGGAGGCAAAGGGAACTTGCCCCTAGGTGACACTCCTCCCACCATTGTAAAGACAGAACCATGGGATGGAAAAGATGGAGAAATAATTGAGGAAGATGAATTTTCTCTTGAAGAACTCATGGGAGATGATGCCTCAACCAAAGATGAACTATAA

Protein sequence

>MS.gene90626.t1

MAKLSFIAVTIFLFNNLILSHALYGSSSPVLQLTPNNFKSKVLNSNGVVLVEFFAPWCGHCKALTPIWEKAATVLKGVVTVAALDADAHQSLAQEYGIRGFPTIKVFAPGKPPVDYQGARDVKPIAEYALQQVKALLKERLNGKATGGSNEKKETTASSSVELNSSNFDELVIKSKELWIVEFFAPWCGHCKKLAPEWKRASNNLKGKVKLGHVDCDADKSLMSRFNVQGFPTILVFGADKDTPIPYEGARTASAIESFALEQLETNVAPPEVTELYSPDVLEEKCGSAAICFVSFLPDILDSKAEGEKQIPSAVINSCREVQKDYVWAAAGKQPDLEQKVGVGGYGYPALVALNVKKGVYAPLKSAFELDQIIEFVKEAGRGGKGNLPLGDTPPTIVKTEPWDGKDGEIIEEDEFSLEELMGDDASTKDEL