AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81660.t1 MTR_5g084930 98.621 435 6 0 1 435 1 435 0.0 881
MS.gene81660.t1 MTR_2g021750 84.211 133 21 0 1 133 1 133 1.87e-72 232
MS.gene81660.t1 MTR_2g021750 44.037 109 60 1 156 264 26 133 2.06e-23 100
MS.gene81660.t1 MTR_7g112040 33.456 272 155 8 1 267 3 253 9.40e-40 146
MS.gene81660.t1 MTR_7g112040 42.308 130 67 4 157 280 23 150 2.67e-21 95.1
MS.gene81660.t1 MTR_1g087520 34.583 240 137 5 33 267 34 258 3.81e-39 144
MS.gene81660.t1 MTR_1g087520 52.041 98 44 2 28 122 147 244 5.79e-24 102
MS.gene81660.t1 MTR_1g087520 40.625 128 68 4 163 284 34 159 2.76e-19 89.4
MS.gene81660.t1 MTR_3g088220 42.202 109 56 4 30 132 35 142 4.87e-17 83.6
MS.gene81660.t1 MTR_3g088220 34.884 172 93 7 163 329 38 195 1.61e-16 82.0
MS.gene81660.t1 MTR_3g088220 32.381 105 69 1 26 128 375 479 2.44e-11 65.9
MS.gene81660.t1 MTR_1g096790 41.176 102 55 3 30 128 28 127 9.04e-17 82.4
MS.gene81660.t1 MTR_1g096790 29.075 227 129 7 163 382 31 232 3.80e-15 77.4
MS.gene81660.t1 MTR_2g094180 41.600 125 65 4 135 256 55 174 1.73e-14 75.9
MS.gene81660.t1 MTR_2g094180 51.220 82 38 2 30 110 80 160 3.93e-13 71.6
MS.gene81660.t1 MTR_2g094180 32.609 138 87 3 36 169 424 559 7.57e-12 67.8
MS.gene81660.t1 MTR_2g094180 27.184 206 132 6 64 259 322 519 1.47e-11 66.6
MS.gene81660.t1 MTR_2g079420 27.517 149 98 2 107 245 9 157 2.39e-14 71.2
MS.gene81660.t1 MTR_2g079420 34.653 101 66 0 11 111 51 151 3.32e-13 68.2
MS.gene81660.t1 MTR_8g059015 41.463 82 48 0 30 111 73 154 2.95e-14 71.2
MS.gene81660.t1 MTR_8g059015 25.131 191 123 6 72 259 2 175 2.39e-12 65.5
MS.gene81660.t1 MTR_1g114290 34.483 116 72 2 24 138 64 176 1.66e-13 68.9
MS.gene81660.t1 MTR_1g114290 30.631 111 73 1 153 263 63 169 7.15e-13 67.4
MS.gene81660.t1 MTR_2g093680 27.966 118 82 2 17 132 29 145 3.45e-13 67.8
MS.gene81660.t1 MTR_2g093680 28.333 120 83 2 156 273 37 155 5.03e-12 64.3
MS.gene81660.t1 MTR_1g098660 32.558 86 58 0 34 119 66 151 6.68e-13 67.0
MS.gene81660.t1 MTR_1g098660 29.808 104 66 3 166 268 68 165 2.72e-11 62.4
MS.gene81660.t1 MTR_2g079340 41.975 81 47 0 31 111 37 117 9.41e-13 66.2
MS.gene81660.t1 MTR_2g079340 36.620 71 45 0 167 237 43 113 3.41e-11 62.0
MS.gene81660.t1 MTR_4g059450 48.421 95 40 5 30 120 102 191 1.51e-12 69.7
MS.gene81660.t1 MTR_2g079400 34.513 113 68 1 5 111 3 115 5.31e-12 63.5
MS.gene81660.t1 MTR_3g089065 35.632 87 56 0 33 119 73 159 9.78e-12 63.9
MS.gene81660.t1 MTR_4g080800 32.967 91 52 2 160 242 143 232 2.24e-11 65.9
MS.gene81660.t1 MTR_4g085880 36.905 84 50 1 31 111 63 146 6.09e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81660.t1 AT1G04980 72.523 444 112 4 1 435 5 447 0.0 679
MS.gene81660.t1 AT2G32920 73.944 426 106 4 14 435 16 440 0.0 655
MS.gene81660.t1 AT2G47470 36.667 240 132 5 33 267 28 252 1.52e-44 156
MS.gene81660.t1 AT2G47470 53.398 103 43 3 30 128 143 244 4.78e-27 109
MS.gene81660.t1 AT2G47470 39.370 127 71 3 163 284 28 153 1.23e-19 88.6
MS.gene81660.t1 AT2G47470 36.667 240 132 5 33 267 28 252 3.53e-44 157
MS.gene81660.t1 AT2G47470 53.398 103 43 3 30 128 143 244 4.82e-27 110
MS.gene81660.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.89e-19 88.6
MS.gene81660.t1 AT2G47470 36.667 240 132 5 33 267 28 252 3.64e-44 157
MS.gene81660.t1 AT2G47470 53.398 103 43 3 30 128 143 244 5.37e-27 110
MS.gene81660.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.79e-19 89.0
MS.gene81660.t1 AT2G47470 36.667 240 132 5 33 267 28 252 4.68e-44 157
MS.gene81660.t1 AT2G47470 53.398 103 43 3 30 128 143 244 5.65e-27 111
MS.gene81660.t1 AT2G47470 39.370 127 71 3 163 284 28 153 3.14e-19 89.0
MS.gene81660.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.06e-18 89.0
MS.gene81660.t1 AT3G54960 28.182 220 136 6 163 380 104 303 2.53e-15 78.6
MS.gene81660.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.36e-18 88.6
MS.gene81660.t1 AT3G54960 28.182 220 136 6 163 380 104 303 3.15e-15 78.2
MS.gene81660.t1 AT3G54960 37.363 91 49 2 36 126 445 527 3.41e-11 65.5
MS.gene81660.t1 AT1G21750 41.284 109 57 4 30 132 32 139 1.18e-17 85.5
MS.gene81660.t1 AT1G21750 35.849 106 62 3 163 263 35 139 1.01e-14 76.3
MS.gene81660.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.22e-12 70.1
MS.gene81660.t1 AT1G21750 41.284 109 57 4 30 132 32 139 1.19e-17 85.5
MS.gene81660.t1 AT1G21750 29.518 166 99 5 163 323 35 187 1.05e-14 76.3
MS.gene81660.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.04e-12 70.1
MS.gene81660.t1 AT1G21750 35.577 104 64 2 165 266 381 483 3.23e-11 65.5
MS.gene81660.t1 AT5G60640 36.493 211 111 10 30 226 105 306 1.59e-17 85.5
MS.gene81660.t1 AT5G60640 42.424 99 49 4 161 256 106 199 4.50e-15 77.8
MS.gene81660.t1 AT5G60640 26.733 202 130 5 68 259 351 544 7.63e-12 67.8
MS.gene81660.t1 AT5G60640 36.493 211 111 10 30 226 105 306 1.85e-17 85.1
MS.gene81660.t1 AT5G60640 42.424 99 49 4 161 256 106 199 5.92e-15 77.4
MS.gene81660.t1 AT5G60640 26.633 199 129 5 62 252 346 535 3.61e-11 65.5
MS.gene81660.t1 AT5G60640 36.493 211 111 10 30 226 105 306 2.06e-17 84.7
MS.gene81660.t1 AT5G60640 42.424 99 49 4 161 256 106 199 3.57e-15 77.8
MS.gene81660.t1 AT5G60640 34.737 95 60 1 167 259 386 480 3.86e-11 65.5
MS.gene81660.t1 AT1G77510 40.367 109 58 4 30 132 31 138 8.87e-17 82.8
MS.gene81660.t1 AT1G77510 28.421 190 117 6 152 336 23 198 1.46e-16 82.0
MS.gene81660.t1 AT1G77510 26.820 261 163 11 14 259 227 474 5.23e-11 65.1
MS.gene81660.t1 AT1G35620 38.235 102 58 3 30 128 34 133 8.62e-15 76.6
MS.gene81660.t1 AT1G35620 27.966 236 138 10 155 383 29 239 8.78e-14 73.2
MS.gene81660.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81660.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81660.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81660.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81660.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81660.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81660.t1 AT1G07960 29.167 120 82 2 28 144 25 144 4.22e-14 69.7
MS.gene81660.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.49e-14 68.9
MS.gene81660.t1 AT1G43560 37.209 86 54 0 34 119 64 149 1.54e-13 68.9
MS.gene81660.t1 AT1G76760 31.429 105 68 1 34 138 69 169 2.03e-13 68.6
MS.gene81660.t1 AT4G03520 36.082 97 59 2 151 245 74 169 3.70e-12 65.5
MS.gene81660.t1 AT1G50320 30.000 150 89 4 121 263 30 170 4.41e-12 65.1
MS.gene81660.t1 AT3G15360 36.667 90 57 0 30 119 88 177 4.76e-12 65.1
MS.gene81660.t1 AT4G27080 33.663 101 58 2 150 242 133 232 3.16e-11 65.5
MS.gene81660.t1 AT4G27080 33.663 101 58 2 150 242 185 284 3.68e-11 65.5
MS.gene81660.t1 AT1G03680 26.282 156 95 4 110 245 8 163 7.48e-11 61.2
MS.gene81660.t1 AT3G20560 34.000 100 57 2 151 242 134 232 9.45e-11 63.9

Find 108 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTCCCTTTCAAATTAT+TGG 0.104762 5.1:+66831358 None:intergenic
TTCCCAACAATCTTGGTATT+TGG 0.173156 5.1:-66830944 MS.gene81660:CDS
TTCCTTCCTTCCCGACATTT+TGG 0.184244 5.1:-66830664 MS.gene81660:CDS
CTTAATTCCCTTCAGGAATA+TGG 0.210374 5.1:-66832146 MS.gene81660:intron
GAAGGCAGCTACTGTATTAA+AGG 0.276220 5.1:-66833063 MS.gene81660:CDS
CTCTAGTAACTTCGATGAAT+TGG 0.285509 5.1:-66831586 MS.gene81660:CDS
CTTCAGGAATATGGTATTAG+AGG 0.289766 5.1:-66832137 MS.gene81660:intron
CTATATAGCTCTGTCACTTC+TGG 0.297987 5.1:+66830824 None:intergenic
GTTTCCTTATAGTTCATCTT+TGG 0.305542 5.1:+66829779 None:intergenic
TTTGAAAGGGAAGGTTAAAC+TGG 0.309941 5.1:-66831351 MS.gene81660:CDS
GTAAGGCTCTGACTCCTATA+TGG 0.316417 5.1:-66833088 MS.gene81660:CDS
TGCGATTGGTTTAACATCTC+TGG 0.351595 5.1:+66832058 None:intergenic
CTCAAGGTCTGGCTGCTTAC+CGG 0.356762 5.1:+66830159 None:intergenic
TAGAGGATTTCCAACTATAA+AGG 0.370686 5.1:-66832120 MS.gene81660:CDS
AACACCTTTCTTAACGTTCA+AGG 0.373568 5.1:+66830093 None:intergenic
CGCAGAATATGCACTTCAAC+AGG 0.373604 5.1:-66832039 MS.gene81660:intron
TCAACCAAAGATGAACTATA+AGG 0.387123 5.1:-66829783 None:intergenic
AAAGTTGGTGTTGGTGGGTA+TGG 0.390826 5.1:-66830133 MS.gene81660:CDS
GGGTCTTGAACAGCTATGTA+TGG 0.397598 5.1:-66830189 MS.gene81660:intron
CTAGCACCCTCGTAAGGAAT+TGG 0.409040 5.1:+66830905 None:intergenic
TCAAGGATTCCCAACAATCT+TGG 0.416145 5.1:-66830951 MS.gene81660:CDS
TCCATGGTGCGGGCACTGTA+AGG 0.416505 5.1:-66833105 MS.gene81660:CDS
ACCTTGGACTTGAAGTTGTT+AGG 0.419712 5.1:+66834420 None:intergenic
TTGTTGAATTCTTTGCTCCA+TGG 0.424265 5.1:-66833121 MS.gene81660:CDS
TGCTGATGCTCACCAATCTC+TGG 0.427343 5.1:-66833015 MS.gene81660:CDS
AGTTCAAAAGGAGTCCTTAC+AGG 0.430959 5.1:-66830584 MS.gene81660:intron
TTAGGAGTGAGTTGAAGAAC+AGG 0.432451 5.1:+66834438 None:intergenic
CTGGCTCCTTGGTAATCAAC+TGG 0.433932 5.1:+66832077 None:intergenic
AGGAATTGGAGTATCTTTAT+CGG 0.435399 5.1:+66830919 None:intergenic
AGAAACCACCGCTTCTTCTT+CGG 0.438238 5.1:-66831619 MS.gene81660:CDS
TCTGTTTCTCCCCTCCGCCT+TGG 0.439079 5.1:+66830638 None:intergenic
AGAGAATTTGTGAAAGAAGC+TGG 0.439854 5.1:-66829942 MS.gene81660:CDS
GTGTTGTCTATAGGATGTTT+TGG 0.440808 5.1:-66830721 MS.gene81660:intron
TTATCAAAAGCAAAGAACTT+TGG 0.443575 5.1:-66831563 MS.gene81660:CDS
TTTGTCAGTCTCTAATGAGC+AGG 0.447245 5.1:-66830982 MS.gene81660:intron
GGTGCAAACACCTTTATAGT+TGG 0.448420 5.1:+66832110 None:intergenic
CCAACTTTCTGCTCAAGGTC+TGG 0.450805 5.1:+66830148 None:intergenic
AACCGTAGAGAGCGTGAGAA+AGG 0.451953 5.1:+66834469 None:intergenic
TGCTCACCAATCTCTGGCTC+AGG 0.454025 5.1:-66833009 MS.gene81660:intron
GTTTAACATCTCTGGCTCCT+TGG 0.454708 5.1:+66832066 None:intergenic
ATGAGCAGGTTCAATGTTCA+AGG 0.456443 5.1:-66830968 MS.gene81660:CDS
AATTCTTTGCTCCATGGTGC+GGG 0.458259 5.1:-66833115 MS.gene81660:CDS
ATCATTCGCACTAGAGCAGC+TGG 0.462465 5.1:-66830864 MS.gene81660:CDS
TTATAGTTCATCTTTGGTTG+AGG 0.465932 5.1:+66829785 None:intergenic
TGTCAGGTTCTGAATTCAAA+TGG 0.470995 5.1:-66833152 MS.gene81660:intron
CTCCAAATACCAAGATTGTT+GGG 0.472339 5.1:+66830942 None:intergenic
GGAAAACCTGAGCCAGAGAT+TGG 0.473756 5.1:+66833003 None:intergenic
CGGTTAAATGGAAAAGCAAC+AGG 0.474554 5.1:-66831660 MS.gene81660:CDS
GCTCCAAATACCAAGATTGT+TGG 0.479181 5.1:+66830941 None:intergenic
ACGTTCAAGGCTACTAATGC+TGG 0.481617 5.1:+66830106 None:intergenic
ATCCTTTCTCACGCTCTCTA+CGG 0.482498 5.1:-66834471 MS.gene81660:CDS
CAGTTGCAGAGAAGTTCAAA+AGG 0.484219 5.1:-66830596 MS.gene81660:CDS
GGTTCTGTCTTTACAATGGT+GGG 0.490337 5.1:+66829879 None:intergenic
ACTATAAAGGTGTTTGCACC+TGG 0.493971 5.1:-66832107 MS.gene81660:CDS
GCCTTGGAATCCAAAATGTC+GGG 0.495320 5.1:+66830654 None:intergenic
GAACCATGGGATGGAAAAGA+TGG 0.495841 5.1:-66829861 MS.gene81660:CDS
TGGTTCTGTCTTTACAATGG+TGG 0.496152 5.1:+66829878 None:intergenic
AGAGCATCCAATAATTTGAA+AGG 0.498898 5.1:-66831365 MS.gene81660:CDS
CGCCTTGGAATCCAAAATGT+CGG 0.513014 5.1:+66830653 None:intergenic
GAAGCTGGACGTGGAGGCAA+AGG 0.515570 5.1:-66829927 MS.gene81660:CDS
AAGGCAGCTACTGTATTAAA+GGG 0.517489 5.1:-66833062 MS.gene81660:CDS
GAGCATCCAATAATTTGAAA+GGG 0.518744 5.1:-66831364 MS.gene81660:CDS
GTAGCTGCCTTCTCCCATAT+AGG 0.519121 5.1:+66833074 None:intergenic
TGGTGGGAGGAGTGTCACCT+AGG 0.522614 5.1:+66829895 None:intergenic
ATCCAATAATTTGAAAGGGA+AGG 0.529134 5.1:-66831360 MS.gene81660:CDS
TAAGGCTCTGACTCCTATAT+GGG 0.533987 5.1:-66833087 MS.gene81660:CDS
CCAGACCTTGAGCAGAAAGT+TGG 0.535182 5.1:-66830148 MS.gene81660:CDS
GGTGGGAGGAGTGTCACCTA+GGG 0.535529 5.1:+66829896 None:intergenic
GAATTCTTTGCTCCATGGTG+CGG 0.548779 5.1:-66833116 MS.gene81660:CDS
GAGCAGAAAGTTGGTGTTGG+TGG 0.549595 5.1:-66830139 MS.gene81660:CDS
TGAAGTGCATATTCTGCGAT+TGG 0.550530 5.1:+66832044 None:intergenic
TCCTAACAACTTCAAGTCCA+AGG 0.552476 5.1:-66834421 MS.gene81660:intron
ATCCAAAATGTCGGGAAGGA+AGG 0.552840 5.1:+66830662 None:intergenic
CCATGGTTCTGTCTTTACAA+TGG 0.553296 5.1:+66829875 None:intergenic
GTAGCCTTGAACGTTAAGAA+AGG 0.556407 5.1:-66830097 MS.gene81660:CDS
CTCTAGTGCGAATGATTCGA+TGG 0.558140 5.1:+66830871 None:intergenic
GGTCTTGAACAGCTATGTAT+GGG 0.559621 5.1:-66830188 MS.gene81660:intron
AAAAGATGGAGAAATAATTG+AGG 0.562273 5.1:-66829847 MS.gene81660:CDS
GCCTTACAGTGCCCGCACCA+TGG 0.567839 5.1:+66833104 None:intergenic
CAACTGTTAATAACTGCTGA+AGG 0.571823 5.1:+66830613 None:intergenic
GCAGTTCTAGCACCCTCGTA+AGG 0.576634 5.1:+66830899 None:intergenic
CAACACCAACTTTCTGCTCA+AGG 0.577087 5.1:+66830143 None:intergenic
GCTCCTTGGTAATCAACTGG+TGG 0.580906 5.1:+66832080 None:intergenic
AGCAGAAAGTTGGTGTTGGT+GGG 0.581032 5.1:-66830138 MS.gene81660:CDS
AAGCTGGACGTGGAGGCAAA+GGG 0.583780 5.1:-66829926 MS.gene81660:CDS
TTTGTGAAAGAAGCTGGACG+TGG 0.587104 5.1:-66829936 MS.gene81660:CDS
AGCTATGTATGGGCAGCTGC+CGG 0.590014 5.1:-66830178 MS.gene81660:CDS
AGTGAGTTGAAGAACAGGTG+AGG 0.594004 5.1:+66834443 None:intergenic
TCTGACTCCTATATGGGAGA+AGG 0.598675 5.1:-66833081 MS.gene81660:CDS
TCTGTCTTTACAATGGTGGG+AGG 0.605063 5.1:+66829882 None:intergenic
TAGTTCTACCGAAGAAGAAG+CGG 0.621191 5.1:+66831611 None:intergenic
AGTTCAAAAGCACTCTTGAG+AGG 0.621890 5.1:+66830064 None:intergenic
CATTGTAAAGACAGAACCAT+GGG 0.623172 5.1:-66829874 MS.gene81660:CDS
TTCTACCGAAGAAGAAGCGG+TGG 0.624355 5.1:+66831614 None:intergenic
GGCAAAGGGAACTTGCCCCT+AGG 0.627464 5.1:-66829912 MS.gene81660:CDS
CTTGAGCAGAAAGTTGGTGT+TGG 0.628583 5.1:-66830142 MS.gene81660:CDS
TTGAAAGGGAAGGTTAAACT+GGG 0.631529 5.1:-66831350 MS.gene81660:CDS
TGGAATCCAAAATGTCGGGA+AGG 0.635224 5.1:+66830658 None:intergenic
GATACTCCAATTCCTTACGA+GGG 0.636183 5.1:-66830911 MS.gene81660:CDS
TGTTGACTGTGATGCTGACA+AGG 0.636371 5.1:-66831324 MS.gene81660:intron
GTAAAGACAGAACCATGGGA+TGG 0.640244 5.1:-66829870 MS.gene81660:CDS
TATAGCTCTGTCACTTCTGG+AGG 0.640322 5.1:+66830827 None:intergenic
GTGAAAGAAGCTGGACGTGG+AGG 0.650513 5.1:-66829933 MS.gene81660:CDS
TTAAATGGAAAAGCAACAGG+TGG 0.661631 5.1:-66831657 MS.gene81660:CDS
AGATACTCCAATTCCTTACG+AGG 0.665654 5.1:-66830912 MS.gene81660:CDS
GTGGGAGGAGTGTCACCTAG+GGG 0.673404 5.1:+66829897 None:intergenic
CCATTGTAAAGACAGAACCA+TGG 0.708421 5.1:-66829875 MS.gene81660:CDS
AAACCACCAGTTGATTACCA+AGG 0.716041 5.1:-66832083 MS.gene81660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTATCTTTATACATA+AGG + chr5.1:66830949-66830968 None:intergenic 10.0%
!! GTAATAAATAATTGAAATAT+AGG + chr5.1:66832803-66832822 None:intergenic 10.0%
!! TAATTTATCTTTATACATAA+GGG + chr5.1:66830948-66830967 None:intergenic 10.0%
!! TATAAATAAATTGAAAAGTA+AGG + chr5.1:66833237-66833256 None:intergenic 10.0%
!!! TCATTTTCTAAAATTATTAT+CGG - chr5.1:66830340-66830359 MS.gene81660:intron 10.0%
!! AAAAATAGACTTACATAATT+TGG + chr5.1:66834272-66834291 None:intergenic 15.0%
!! AATATTTGATTGAAACTTTA+AGG + chr5.1:66832333-66832352 None:intergenic 15.0%
!! AATTTATCTTTATACATAAG+GGG + chr5.1:66830947-66830966 None:intergenic 15.0%
!! AATTTGATTAATAACTTGAA+AGG - chr5.1:66832467-66832486 MS.gene81660:intron 15.0%
!! ATAACACATAATATTCATAA+AGG + chr5.1:66831429-66831448 None:intergenic 15.0%
!! ATTTGATTAATAACTTGAAA+GGG - chr5.1:66832468-66832487 MS.gene81660:intron 15.0%
!! TGAAAAATTACTACAAATAA+AGG - chr5.1:66832442-66832461 MS.gene81660:intron 15.0%
!! TTATACTATTGTATTATGAT+TGG - chr5.1:66831008-66831027 MS.gene81660:intron 15.0%
!!! AAAAATTATTCGTATTTTCT+TGG + chr5.1:66831064-66831083 None:intergenic 15.0%
!!! AAAATTATTCGTATTTTCTT+GGG + chr5.1:66831063-66831082 None:intergenic 15.0%
!!! ATAAAATTGTTTGATGTTTT+AGG - chr5.1:66831813-66831832 MS.gene81660:intron 15.0%
!!! TAAAATTGTTTGATGTTTTA+GGG - chr5.1:66831814-66831833 MS.gene81660:intron 15.0%
!! AAATTTAAATACTGAATCTG+AGG + chr5.1:66831348-66831367 None:intergenic 20.0%
!! AAGGAAAAACTTTACATATA+AGG + chr5.1:66831878-66831897 None:intergenic 20.0%
!! ATTGAAAAAAGATTAAACCT+TGG + chr5.1:66829906-66829925 None:intergenic 20.0%
!! CACTAATGTAATTTATTCTT+TGG + chr5.1:66831938-66831957 None:intergenic 20.0%
!! CATGTTTAAATCAAGATAAA+AGG - chr5.1:66833872-66833891 MS.gene81660:intron 20.0%
!! TACTAACTAAACTCAAATTA+AGG - chr5.1:66830816-66830835 MS.gene81660:intron 20.0%
!! TACTTACATGGAAATATAAT+GGG - chr5.1:66833987-66834006 MS.gene81660:intron 20.0%
!! TCAGAATAATATAAACTGAA+AGG + chr5.1:66833293-66833312 None:intergenic 20.0%
!! TTATAGCTTATATGAAAAAC+AGG - chr5.1:66831654-66831673 MS.gene81660:CDS 20.0%
!! TTTAACAAACTGTTATTGTT+CGG - chr5.1:66833092-66833111 MS.gene81660:CDS 20.0%
!!! AAATTATTCGTATTTTCTTG+GGG + chr5.1:66831062-66831081 None:intergenic 20.0%
!!! AATGGTTTTTTGTTTGAATT+TGG - chr5.1:66834097-66834116 MS.gene81660:intron 20.0%
!!! ATGGTTTTTTGTTTGAATTT+GGG - chr5.1:66834098-66834117 MS.gene81660:intron 20.0%
!!! CTAATTTTATGCTAAATAGT+TGG - chr5.1:66834292-66834311 MS.gene81660:intron 20.0%
!!! GTCTTTTTTTTATTTCTCAA+AGG - chr5.1:66832883-66832902 MS.gene81660:intron 20.0%
!!! TCTTTCAAATTCAACTTTTT+CGG - chr5.1:66833816-66833835 MS.gene81660:intron 20.0%
!!! TTGCAGTTATTTTTAAATTG+CGG - chr5.1:66833954-66833973 MS.gene81660:intron 20.0%
! AAAAGATGGAGAAATAATTG+AGG - chr5.1:66834460-66834479 MS.gene81660:CDS 25.0%
! AAAATACCAGCTAAAAAAGT+GGG + chr5.1:66829952-66829971 None:intergenic 25.0%
! AATATCAATGTATTGGGATT+AGG - chr5.1:66832541-66832560 MS.gene81660:intron 25.0%
! AGTGAGAATATCAATGTATT+GGG - chr5.1:66832535-66832554 MS.gene81660:intron 25.0%
! ATATCAATGTATTGGGATTA+GGG - chr5.1:66832542-66832561 MS.gene81660:intron 25.0%
! CAATAGTATAAAAGACTGTT+TGG + chr5.1:66830999-66831018 None:intergenic 25.0%
! GTACTTACATGGAAATATAA+TGG - chr5.1:66833986-66834005 MS.gene81660:intron 25.0%
! TAGCACTAAAATTTAGTTGA+AGG - chr5.1:66830480-66830499 MS.gene81660:intron 25.0%
! TATAGTTTATTTGCATGTAC+AGG - chr5.1:66832604-66832623 MS.gene81660:intron 25.0%
! TCAGTTTATATTATTCTGAC+AGG - chr5.1:66833294-66833313 MS.gene81660:intron 25.0%
! TTATCAAAAGCAAAGAACTT+TGG - chr5.1:66832744-66832763 MS.gene81660:intron 25.0%
! TTTATCCTTGAAAACTATCT+GGG - chr5.1:66830009-66830028 MS.gene81660:intron 25.0%
!! AAGTGATTTTATGTTTGGAT+AGG - chr5.1:66830505-66830524 MS.gene81660:intron 25.0%
!! AGGTAAAGTGATTTTATGTT+TGG - chr5.1:66830500-66830519 MS.gene81660:intron 25.0%
!! ATTAAGTTGTTAATCCCAAT+AGG - chr5.1:66831742-66831761 MS.gene81660:intron 25.0%
!! ATTTGATTGAAACTTTAAGG+AGG + chr5.1:66832330-66832349 None:intergenic 25.0%
!! TAGTGTTACAATTTGGATTT+TGG - chr5.1:66832364-66832383 MS.gene81660:intron 25.0%
!! TTAAGTTGTTAATCCCAATA+GGG - chr5.1:66831743-66831762 MS.gene81660:intron 25.0%
!! TTTAGCTGGTATTTTCAAAT+GGG - chr5.1:66829957-66829976 MS.gene81660:intron 25.0%
!! TTTGATTGAAACTTTAAGGA+GGG + chr5.1:66832329-66832348 None:intergenic 25.0%
!! TTTTATCCTTGAAAACTATC+TGG - chr5.1:66830008-66830027 MS.gene81660:intron 25.0%
!!! ATGGTTGATTTTATGATTCT+GGG - chr5.1:66830103-66830122 MS.gene81660:CDS 25.0%
!!! TATGGTTGATTTTATGATTC+TGG - chr5.1:66830102-66830121 MS.gene81660:CDS 25.0%
!!! TCAAGTAGAATCTATTTTGA+AGG - chr5.1:66830683-66830702 MS.gene81660:CDS 25.0%
!!! TTTTAGCTGGTATTTTCAAA+TGG - chr5.1:66829956-66829975 MS.gene81660:intron 25.0%
!!! TTTTTTATTTCTCAAAGGTG+TGG - chr5.1:66832888-66832907 MS.gene81660:intron 25.0%
AAATAGATTCTACTTGAAGC+TGG + chr5.1:66830680-66830699 None:intergenic 30.0%
AACCTTCCCTTTCAAATTAT+TGG + chr5.1:66832952-66832971 None:intergenic 30.0%
AACTCAAATTAAGGTCTGTT+TGG - chr5.1:66830825-66830844 MS.gene81660:CDS 30.0%
AATATTATGCCATAAAGCAC+CGG - chr5.1:66830256-66830275 MS.gene81660:intron 30.0%
AATTGTAACACTACACATGT+TGG + chr5.1:66832357-66832376 None:intergenic 30.0%
ACATGTGTAGTGTTACAATT+TGG - chr5.1:66832357-66832376 MS.gene81660:intron 30.0%
AGGAATGAAGAAATGAACAA+TGG + chr5.1:66831328-66831347 None:intergenic 30.0%
ATCCAATAATTTGAAAGGGA+AGG - chr5.1:66832947-66832966 MS.gene81660:intron 30.0%
ATGCAGATAGCAAAAAATAG+CGG + chr5.1:66833194-66833213 None:intergenic 30.0%
ATTAACTCATGAGTCATAGA+GGG + chr5.1:66833797-66833816 None:intergenic 30.0%
CAGTGAGAATATCAATGTAT+TGG - chr5.1:66832534-66832553 MS.gene81660:intron 30.0%
CCTGTTATGATTTACATGTT+CGG - chr5.1:66832063-66832082 MS.gene81660:CDS 30.0%
GAAAATACCAGCTAAAAAAG+TGG + chr5.1:66829953-66829972 None:intergenic 30.0%
GAAATTGTAGCTTCTAATTC+TGG + chr5.1:66830579-66830598 None:intergenic 30.0%
GAACCTGACATTATTCAAAA+TGG + chr5.1:66831145-66831164 None:intergenic 30.0%
GAGCATCCAATAATTTGAAA+GGG - chr5.1:66832943-66832962 MS.gene81660:intron 30.0%
GATATACAATATGTAGAGCA+TGG + chr5.1:66831856-66831875 None:intergenic 30.0%
GGCAAAATAAATTCTACTCT+AGG - chr5.1:66830704-66830723 MS.gene81660:CDS 30.0%
TACAATCAAGTAAAGTTTGC+AGG + chr5.1:66833528-66833547 None:intergenic 30.0%
TAGAGGATTTCCAACTATAA+AGG - chr5.1:66832187-66832206 MS.gene81660:intron 30.0%
TCGAATAAACCAATCTAAAC+AGG + chr5.1:66831535-66831554 None:intergenic 30.0%
TCTAATACCATATTCCTGAA+GGG + chr5.1:66832171-66832190 None:intergenic 30.0%
TTATAGTTCATCTTTGGTTG+AGG + chr5.1:66834525-66834544 None:intergenic 30.0%
TTATTTGCATGTACAGGTAA+AGG - chr5.1:66832610-66832629 MS.gene81660:intron 30.0%
! AAAATGATGACGTTAGTTAC+AGG + chr5.1:66831780-66831799 None:intergenic 30.0%
! AGAGCATCCAATAATTTGAA+AGG - chr5.1:66832942-66832961 MS.gene81660:intron 30.0%
! AGATAGATGTCTTCTTTTTG+TGG - chr5.1:66832394-66832413 MS.gene81660:intron 30.0%
! AGGAATTGGAGTATCTTTAT+CGG + chr5.1:66833391-66833410 None:intergenic 30.0%
! ATTTTCTCTTGAAGAACTCA+TGG - chr5.1:66834490-66834509 MS.gene81660:CDS 30.0%
! GTAATGCATCAGGTTTTTAT+GGG - chr5.1:66831117-66831136 MS.gene81660:intron 30.0%
! TAAACATGAGTGTTGTCTAT+AGG - chr5.1:66833577-66833596 MS.gene81660:intron 30.0%
! TATCTAGTTTGTAATGCATC+AGG - chr5.1:66831107-66831126 MS.gene81660:intron 30.0%
! TGTAATGCATCAGGTTTTTA+TGG - chr5.1:66831116-66831135 MS.gene81660:intron 30.0%
! TGTTGATTAGTGTGTGAATA+TGG - chr5.1:66830084-66830103 MS.gene81660:CDS 30.0%
! TTGGTTGCTTTACATAGAAT+GGG + chr5.1:66831919-66831938 None:intergenic 30.0%
! TTTGGTTGCTTTACATAGAA+TGG + chr5.1:66831920-66831939 None:intergenic 30.0%
! TTTTATGATTCTGGGTTTTG+TGG - chr5.1:66830111-66830130 MS.gene81660:CDS 30.0%
! TTTTCTCTTGAAGAACTCAT+GGG - chr5.1:66834491-66834510 MS.gene81660:CDS 30.0%
!! GAAATATAATGGGTTCTCAT+TGG - chr5.1:66833997-66834016 MS.gene81660:intron 30.0%
!!! CAGGAGCTAATTTTTTACAA+TGG + chr5.1:66832914-66832933 None:intergenic 30.0%
!!! TGTTTTTTTACTTGCCTGTA+AGG + chr5.1:66833740-66833759 None:intergenic 30.0%
AACACCTTTCTTAACGTTCA+AGG + chr5.1:66834217-66834236 None:intergenic 35.0%
AAGGCAGCTACTGTATTAAA+GGG - chr5.1:66831245-66831264 MS.gene81660:intron 35.0%
AAGTACCTGTTAGACAGTTA+GGG - chr5.1:66831570-66831589 MS.gene81660:CDS 35.0%
AAGTAGATTCTACTTGAAGC+TGG + chr5.1:66830601-66830620 None:intergenic 35.0%
ACACAACATCTATGAAAGCA+CGG + chr5.1:66830401-66830420 None:intergenic 35.0%
AGAGAATTTGTGAAAGAAGC+TGG - chr5.1:66834365-66834384 MS.gene81660:intron 35.0%
CAACTGTTAATAACTGCTGA+AGG + chr5.1:66833697-66833716 None:intergenic 35.0%
CACTGACACATTTGTTTACA+TGG - chr5.1:66830310-66830329 MS.gene81660:intron 35.0%
CATAAGGGGAAAACAACTTA+TGG + chr5.1:66830933-66830952 None:intergenic 35.0%
CATTGTAAAGACAGAACCAT+GGG - chr5.1:66834433-66834452 MS.gene81660:CDS 35.0%
CATTTCTGTACAATGTACAC+TGG - chr5.1:66831460-66831479 MS.gene81660:intron 35.0%
CCGAACATGTAAATCATAAC+AGG + chr5.1:66832066-66832085 None:intergenic 35.0%
CTACTCTAGGTGATTCATTA+AGG - chr5.1:66830717-66830736 MS.gene81660:intron 35.0%
CTCCAAATACCAAGATTGTT+GGG + chr5.1:66833368-66833387 None:intergenic 35.0%
CTCTAATACCATATTCCTGA+AGG + chr5.1:66832172-66832191 None:intergenic 35.0%
CTCTAGTAACTTCGATGAAT+TGG - chr5.1:66832721-66832740 MS.gene81660:intron 35.0%
CTGGAAATACATACCTTTGA+TGG - chr5.1:66831479-66831498 MS.gene81660:intron 35.0%
CTTAATTCCCTTCAGGAATA+TGG - chr5.1:66832161-66832180 MS.gene81660:intron 35.0%
CTTCAGGAATATGGTATTAG+AGG - chr5.1:66832170-66832189 MS.gene81660:intron 35.0%
CTTTGTTGACGAATGCTTAA+TGG - chr5.1:66834079-66834098 MS.gene81660:intron 35.0%
GAATCAGTTTCGTCAAATAG+CGG - chr5.1:66833052-66833071 MS.gene81660:CDS 35.0%
GATAGGTTCATGTAAAAGTG+AGG - chr5.1:66830522-66830541 MS.gene81660:intron 35.0%
GATTAACTCATGAGTCATAG+AGG + chr5.1:66833798-66833817 None:intergenic 35.0%
GCTTCAAGTAGAATCTACTT+TGG - chr5.1:66830601-66830620 MS.gene81660:CDS 35.0%
GTAAAAAATTAGCTCCTGAG+TGG - chr5.1:66832916-66832935 MS.gene81660:intron 35.0%
GTAGAATTACATGTTCAGTC+AGG + chr5.1:66832825-66832844 None:intergenic 35.0%
GTTTGATGAAGATGCATTGT+TGG + chr5.1:66834047-66834066 None:intergenic 35.0%
TAAGTACCTGTTAGACAGTT+AGG - chr5.1:66831569-66831588 MS.gene81660:CDS 35.0%
TACAATATGTAGAGCATGGT+AGG + chr5.1:66831852-66831871 None:intergenic 35.0%
TCAAGTAGAATCTACTTTGG+AGG - chr5.1:66830604-66830623 MS.gene81660:CDS 35.0%
TTAAATGGAAAAGCAACAGG+TGG - chr5.1:66832650-66832669 MS.gene81660:intron 35.0%
TTACATAGAATGGGAAGACT+AGG + chr5.1:66831910-66831929 None:intergenic 35.0%
TTCCCAACAATCTTGGTATT+TGG - chr5.1:66833363-66833382 MS.gene81660:intron 35.0%
TTGAAAGGGAAGGTTAAACT+GGG - chr5.1:66832957-66832976 MS.gene81660:intron 35.0%
TTGTTGAATTCTTTGCTCCA+TGG - chr5.1:66831186-66831205 MS.gene81660:intron 35.0%
TTTGAAAGGGAAGGTTAAAC+TGG - chr5.1:66832956-66832975 MS.gene81660:intron 35.0%
! AAACACCCAGATAGTTTTCA+AGG + chr5.1:66830017-66830036 None:intergenic 35.0%
! GGTATTGAACCTGTTTAGAT+TGG - chr5.1:66831523-66831542 MS.gene81660:intron 35.0%
! GTCTTTTCTTAATTCCCTTC+AGG - chr5.1:66832154-66832173 MS.gene81660:intron 35.0%
! GTGTTGTCTATAGGATGTTT+TGG - chr5.1:66833586-66833605 MS.gene81660:intron 35.0%
! TATTCGTATTTTCTTGGGGA+GGG + chr5.1:66831058-66831077 None:intergenic 35.0%
! TTATTCGTATTTTCTTGGGG+AGG + chr5.1:66831059-66831078 None:intergenic 35.0%
! TTGTAGAATTTTTCGCACCT+TGG - chr5.1:66832768-66832787 MS.gene81660:intron 35.0%
! TTTGCTATGTTGCTGTATTG+TGG - chr5.1:66830049-66830068 MS.gene81660:intron 35.0%
!! AATATAGGAAGTACTCACCA+AGG + chr5.1:66832788-66832807 None:intergenic 35.0%
!! CTTTTGAAGGAACGGTTAAA+TGG - chr5.1:66832635-66832654 MS.gene81660:intron 35.0%
!! TAAAGGCTCTTTTGAAGGAA+CGG - chr5.1:66832627-66832646 MS.gene81660:intron 35.0%
!! TGTCAGGTTCTGAATTCAAA+TGG - chr5.1:66831155-66831174 MS.gene81660:intron 35.0%
!!! GATGTTTTGGAAGAGAAATG+TGG - chr5.1:66833599-66833618 MS.gene81660:intron 35.0%
!!! GTGCCATTTTGAATAATGTC+AGG - chr5.1:66831139-66831158 MS.gene81660:intron 35.0%
AAAAAAGTGGGATCACGAAC+TGG + chr5.1:66829940-66829959 None:intergenic 40.0%
AAAAAGTGGGATCACGAACT+GGG + chr5.1:66829939-66829958 None:intergenic 40.0%
AAACCACCAGTTGATTACCA+AGG - chr5.1:66832224-66832243 MS.gene81660:intron 40.0%
AAATGTGTCAGTGTCTGTGT+CGG + chr5.1:66830303-66830322 None:intergenic 40.0%
ACAAATGTCATGTAAGCGAC+AGG + chr5.1:66831994-66832013 None:intergenic 40.0%
ACCTTGGACTTGAAGTTGTT+AGG + chr5.1:66829890-66829909 None:intergenic 40.0%
ACTCTTCTTGCAACATCACT+TGG - chr5.1:66832493-66832512 MS.gene81660:intron 40.0%
ACTTTCCCTAACTGTCTAAC+AGG + chr5.1:66831578-66831597 None:intergenic 40.0%
AGATACTCCAATTCCTTACG+AGG - chr5.1:66833395-66833414 MS.gene81660:intron 40.0%
AGTTCAAAAGGAGTCCTTAC+AGG - chr5.1:66833723-66833742 MS.gene81660:intron 40.0%
ATGAGCAGGTTCAATGTTCA+AGG - chr5.1:66833339-66833358 MS.gene81660:intron 40.0%
ATGCACTTCAACAGGTTTGT+TGG - chr5.1:66832276-66832295 MS.gene81660:intron 40.0%
ATGCTGACAAGGTAAGCTTA+TGG - chr5.1:66832994-66833013 MS.gene81660:intron 40.0%
CAGTTGCAGAGAAGTTCAAA+AGG - chr5.1:66833711-66833730 MS.gene81660:intron 40.0%
CCATTGTAAAGACAGAACCA+TGG - chr5.1:66834432-66834451 MS.gene81660:CDS 40.0%
CGGTTAAATGGAAAAGCAAC+AGG - chr5.1:66832647-66832666 MS.gene81660:intron 40.0%
GAAGACTAGGAATGTAACGA+AGG + chr5.1:66831897-66831916 None:intergenic 40.0%
GAAGGCAGCTACTGTATTAA+AGG - chr5.1:66831244-66831263 MS.gene81660:intron 40.0%
GATACTCCAATTCCTTACGA+GGG - chr5.1:66833396-66833415 MS.gene81660:intron 40.0%
GCTCCAAATACCAAGATTGT+TGG + chr5.1:66833369-66833388 None:intergenic 40.0%
GGTCTTGAACAGCTATGTAT+GGG - chr5.1:66834119-66834138 MS.gene81660:intron 40.0%
GGTGCAAACACCTTTATAGT+TGG + chr5.1:66832200-66832219 None:intergenic 40.0%
GGTTCTGTCTTTACAATGGT+GGG + chr5.1:66834431-66834450 None:intergenic 40.0%
GGTTGCAAAGTGTACTTACA+TGG - chr5.1:66833975-66833994 MS.gene81660:intron 40.0%
GTTGTGTATGTTTCGTTCTG+TGG - chr5.1:66830414-66830433 MS.gene81660:intron 40.0%
TCAAGGATTCCCAACAATCT+TGG - chr5.1:66833356-66833375 MS.gene81660:intron 40.0%
TCCTAACAACTTCAAGTCCA+AGG - chr5.1:66829886-66829905 MS.gene81660:CDS 40.0%
TGAAGTGCATATTCTGCGAT+TGG + chr5.1:66832266-66832285 None:intergenic 40.0%
TGCTATAGTGCTTCTATAGC+TGG + chr5.1:66833150-66833169 None:intergenic 40.0%
TTTGTCAGTCTCTAATGAGC+AGG - chr5.1:66833325-66833344 MS.gene81660:intron 40.0%
! ACAGGTAAAGGCTCTTTTGA+AGG - chr5.1:66832622-66832641 MS.gene81660:intron 40.0%
! ATGATGACGTTAGTTACAGG+AGG + chr5.1:66831777-66831796 None:intergenic 40.0%
! CCATGGTTCTGTCTTTACAA+TGG + chr5.1:66834435-66834454 None:intergenic 40.0%
! CTATATAGCTCTGTCACTTC+TGG + chr5.1:66833486-66833505 None:intergenic 40.0%
! CTATCTGGGTGTTTTGTGTT+TGG - chr5.1:66830023-66830042 MS.gene81660:intron 40.0%
! GTAGCCTTGAACGTTAAGAA+AGG - chr5.1:66834210-66834229 MS.gene81660:intron 40.0%
! TAAGGCTCTGACTCCTATAT+GGG - chr5.1:66831220-66831239 MS.gene81660:intron 40.0%
! TAATCAACTGGTGGTTTTCC+AGG + chr5.1:66832221-66832240 None:intergenic 40.0%
! TACATACCTTTGATGGACCA+CGG - chr5.1:66831486-66831505 MS.gene81660:intron 40.0%
! TAGTTCTACCGAAGAAGAAG+CGG + chr5.1:66832699-66832718 None:intergenic 40.0%
! TGGTTCTGTCTTTACAATGG+TGG + chr5.1:66834432-66834451 None:intergenic 40.0%
! TTAGGAGTGAGTTGAAGAAC+AGG + chr5.1:66829872-66829891 None:intergenic 40.0%
!! ACTATAAAGGTGTTTGCACC+TGG - chr5.1:66832200-66832219 MS.gene81660:intron 40.0%
!! AGTTCAAAAGCACTCTTGAG+AGG + chr5.1:66834246-66834265 None:intergenic 40.0%
!! GGTTTGTTGGAATCTCTTCT+TGG - chr5.1:66832289-66832308 MS.gene81660:intron 40.0%
!! TGCGATTGGTTTAACATCTC+TGG + chr5.1:66832252-66832271 None:intergenic 40.0%
AATTCTTTGCTCCATGGTGC+GGG - chr5.1:66831192-66831211 MS.gene81660:intron 45.0%
ACGTTCAAGGCTACTAATGC+TGG + chr5.1:66834204-66834223 None:intergenic 45.0%
AGAAACCACCGCTTCTTCTT+CGG - chr5.1:66832688-66832707 MS.gene81660:intron 45.0%
ATCCAAAATGTCGGGAAGGA+AGG + chr5.1:66833648-66833667 None:intergenic 45.0%
ATCCTTTCTCACGCTCTCTA+CGG - chr5.1:66829836-66829855 MS.gene81660:CDS 45.0%
CAACACCAACTTTCTGCTCA+AGG + chr5.1:66834167-66834186 None:intergenic 45.0%
CGCAGAATATGCACTTCAAC+AGG - chr5.1:66832268-66832287 MS.gene81660:intron 45.0%
CGCCTTGGAATCCAAAATGT+CGG + chr5.1:66833657-66833676 None:intergenic 45.0%
CTCTAGTGCGAATGATTCGA+TGG + chr5.1:66833439-66833458 None:intergenic 45.0%
GAACCATGGGATGGAAAAGA+TGG - chr5.1:66834446-66834465 MS.gene81660:CDS 45.0%
GAATTCTTTGCTCCATGGTG+CGG - chr5.1:66831191-66831210 MS.gene81660:intron 45.0%
GCCTTGGAATCCAAAATGTC+GGG + chr5.1:66833656-66833675 None:intergenic 45.0%
GGGTCTTGAACAGCTATGTA+TGG - chr5.1:66834118-66834137 MS.gene81660:intron 45.0%
GTAAAGACAGAACCATGGGA+TGG - chr5.1:66834437-66834456 MS.gene81660:CDS 45.0%
GTAGAGCATGGTAGGATCTT+GGG + chr5.1:66831844-66831863 None:intergenic 45.0%
GTCAGTGTCCATGTCGTATT+AGG - chr5.1:66830372-66830391 MS.gene81660:intron 45.0%
TCTGACTCCTATATGGGAGA+AGG - chr5.1:66831226-66831245 MS.gene81660:intron 45.0%
TGGAATCCAAAATGTCGGGA+AGG + chr5.1:66833652-66833671 None:intergenic 45.0%
TGTAGAGCATGGTAGGATCT+TGG + chr5.1:66831845-66831864 None:intergenic 45.0%
TTTGTGAAAGAAGCTGGACG+TGG - chr5.1:66834371-66834390 MS.gene81660:intron 45.0%
! AGTGAGTTGAAGAACAGGTG+AGG + chr5.1:66829867-66829886 None:intergenic 45.0%
! ATTTTGGATTCCAAGGCGGA+GGG - chr5.1:66833659-66833678 MS.gene81660:intron 45.0%
! CGACATTTTGGATTCCAAGG+CGG - chr5.1:66833655-66833674 MS.gene81660:intron 45.0%
! GAAGCACTATAGCACTGTAG+TGG - chr5.1:66833156-66833175 MS.gene81660:intron 45.0%
! GTAAGGCTCTGACTCCTATA+TGG - chr5.1:66831219-66831238 MS.gene81660:intron 45.0%
! GTTTAACATCTCTGGCTCCT+TGG + chr5.1:66832244-66832263 None:intergenic 45.0%
! TATAGCTCTGTCACTTCTGG+AGG + chr5.1:66833483-66833502 None:intergenic 45.0%
! TCCCGACATTTTGGATTCCA+AGG - chr5.1:66833652-66833671 MS.gene81660:intron 45.0%
! TCTCCATCTTTTCCATCCCA+TGG + chr5.1:66834452-66834471 None:intergenic 45.0%
! TCTGTCTTTACAATGGTGGG+AGG + chr5.1:66834428-66834447 None:intergenic 45.0%
! TGTTGACTGTGATGCTGACA+AGG - chr5.1:66832983-66833002 MS.gene81660:intron 45.0%
! TTCCTTCCTTCCCGACATTT+TGG - chr5.1:66833643-66833662 MS.gene81660:intron 45.0%
! TTGGATGCTCTTTTCCACTC+AGG + chr5.1:66832933-66832952 None:intergenic 45.0%
!! AAAGTTGGTGTTGGTGGGTA+TGG - chr5.1:66834174-66834193 MS.gene81660:intron 45.0%
!! AGCAGAAAGTTGGTGTTGGT+GGG - chr5.1:66834169-66834188 MS.gene81660:intron 45.0%
!! CTTGAGCAGAAAGTTGGTGT+TGG - chr5.1:66834165-66834184 MS.gene81660:intron 45.0%
!!! CGTGATCCCACTTTTTTAGC+TGG - chr5.1:66829943-66829962 MS.gene81660:CDS 45.0%
ACCACGGACGATGCAAAACA+TGG - chr5.1:66831502-66831521 MS.gene81660:intron 50.0%
ACGACATGGACACTGACATG+TGG + chr5.1:66830369-66830388 None:intergenic 50.0%
AGGAGGACACTTGACCCTAT+TGG + chr5.1:66831760-66831779 None:intergenic 50.0%
ATCATTCGCACTAGAGCAGC+TGG - chr5.1:66833443-66833462 MS.gene81660:intron 50.0%
CACGGACACCTAATACGACA+TGG + chr5.1:66830383-66830402 None:intergenic 50.0%
CCAACTTTCTGCTCAAGGTC+TGG + chr5.1:66834162-66834181 None:intergenic 50.0%
CCAGACCTTGAGCAGAAAGT+TGG - chr5.1:66834159-66834178 MS.gene81660:intron 50.0%
CTAGCACCCTCGTAAGGAAT+TGG + chr5.1:66833405-66833424 None:intergenic 50.0%
GCAGGAGAACAAACACTCAC+TGG + chr5.1:66833510-66833529 None:intergenic 50.0%
GGAAAACCTGAGCCAGAGAT+TGG + chr5.1:66831307-66831326 None:intergenic 50.0%
GGAGGACACTTGACCCTATT+GGG + chr5.1:66831759-66831778 None:intergenic 50.0%
GTAGCTGCCTTCTCCCATAT+AGG + chr5.1:66831236-66831255 None:intergenic 50.0%
TGCTGATGCTCACCAATCTC+TGG - chr5.1:66831292-66831311 MS.gene81660:intron 50.0%
TTCTACCGAAGAAGAAGCGG+TGG + chr5.1:66832696-66832715 None:intergenic 50.0%
! AACCGTAGAGAGCGTGAGAA+AGG + chr5.1:66829841-66829860 None:intergenic 50.0%
! ACCATGTTTTGCATCGTCCG+TGG + chr5.1:66831506-66831525 None:intergenic 50.0%
! CATTTTGGATTCCAAGGCGG+AGG - chr5.1:66833658-66833677 MS.gene81660:intron 50.0%
! CTGGCTCCTTGGTAATCAAC+TGG + chr5.1:66832233-66832252 None:intergenic 50.0%
! GCTCCTTGGTAATCAACTGG+TGG + chr5.1:66832230-66832249 None:intergenic 50.0%
! TTTTGGATTCCAAGGCGGAG+GGG - chr5.1:66833660-66833679 MS.gene81660:intron 50.0%
!! CATAAAGCACCGGCACTCTT+CGG - chr5.1:66830266-66830285 MS.gene81660:intron 50.0%
!! GAGCAGAAAGTTGGTGTTGG+TGG - chr5.1:66834168-66834187 MS.gene81660:intron 50.0%
AAGCTGGACGTGGAGGCAAA+GGG - chr5.1:66834381-66834400 MS.gene81660:intron 55.0%
AGCTATGTATGGGCAGCTGC+CGG - chr5.1:66834129-66834148 MS.gene81660:intron 55.0%
CATCGTCCGTGGTCCATCAA+AGG + chr5.1:66831495-66831514 None:intergenic 55.0%
CTCAAGGTCTGGCTGCTTAC+CGG + chr5.1:66834151-66834170 None:intergenic 55.0%
GTGAAAGAAGCTGGACGTGG+AGG - chr5.1:66834374-66834393 MS.gene81660:intron 55.0%
! ACGCCTAATCCGAAGAGTGC+CGG + chr5.1:66830278-66830297 None:intergenic 55.0%
! GCAGTTCTAGCACCCTCGTA+AGG + chr5.1:66833411-66833430 None:intergenic 55.0%
! TGCTCACCAATCTCTGGCTC+AGG - chr5.1:66831298-66831317 MS.gene81660:intron 55.0%
!! CGAAGAGTGCCGGTGCTTTA+TGG + chr5.1:66830268-66830287 None:intergenic 55.0%
GAAGCTGGACGTGGAGGCAA+AGG - chr5.1:66834380-66834399 MS.gene81660:intron 60.0%
GGCAAAGGGAACTTGCCCCT+AGG - chr5.1:66834395-66834414 MS.gene81660:intron 60.0%
! GCACCGGCACTCTTCGGATT+AGG - chr5.1:66830272-66830291 MS.gene81660:intron 60.0%
! TCCATGGTGCGGGCACTGTA+AGG - chr5.1:66831202-66831221 MS.gene81660:intron 60.0%
! TCTGTTTCTCCCCTCCGCCT+TGG + chr5.1:66833672-66833691 None:intergenic 60.0%
!! GGTGGGAGGAGTGTCACCTA+GGG + chr5.1:66834414-66834433 None:intergenic 60.0%
!! GTGGGAGGAGTGTCACCTAG+GGG + chr5.1:66834413-66834432 None:intergenic 60.0%
!! TGGTGGGAGGAGTGTCACCT+AGG + chr5.1:66834415-66834434 None:intergenic 60.0%
GCCTTACAGTGCCCGCACCA+TGG + chr5.1:66831206-66831225 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 66829785 66834544 66829785 ID=MS.gene81660
chr5.1 mRNA 66829785 66834544 66829785 ID=MS.gene81660.t1;Parent=MS.gene81660
chr5.1 exon 66834422 66834544 66834422 ID=MS.gene81660.t1.exon1;Parent=MS.gene81660.t1
chr5.1 CDS 66834422 66834544 66834422 ID=cds.MS.gene81660.t1;Parent=MS.gene81660.t1
chr5.1 exon 66833010 66833168 66833010 ID=MS.gene81660.t1.exon2;Parent=MS.gene81660.t1
chr5.1 CDS 66833010 66833168 66833010 ID=cds.MS.gene81660.t1;Parent=MS.gene81660.t1
chr5.1 exon 66832040 66832153 66832040 ID=MS.gene81660.t1.exon3;Parent=MS.gene81660.t1
chr5.1 CDS 66832040 66832153 66832040 ID=cds.MS.gene81660.t1;Parent=MS.gene81660.t1
chr5.1 exon 66831540 66831703 66831540 ID=MS.gene81660.t1.exon4;Parent=MS.gene81660.t1
chr5.1 CDS 66831540 66831703 66831540 ID=cds.MS.gene81660.t1;Parent=MS.gene81660.t1
chr5.1 exon 66831325 66831424 66831325 ID=MS.gene81660.t1.exon5;Parent=MS.gene81660.t1
chr5.1 CDS 66831325 66831424 66831325 ID=cds.MS.gene81660.t1;Parent=MS.gene81660.t1
chr5.1 exon 66830820 66830996 66830820 ID=MS.gene81660.t1.exon6;Parent=MS.gene81660.t1
chr5.1 CDS 66830820 66830996 66830820 ID=cds.MS.gene81660.t1;Parent=MS.gene81660.t1
chr5.1 exon 66830585 66830730 66830585 ID=MS.gene81660.t1.exon7;Parent=MS.gene81660.t1
chr5.1 CDS 66830585 66830730 66830585 ID=cds.MS.gene81660.t1;Parent=MS.gene81660.t1
chr5.1 exon 66830052 66830198 66830052 ID=MS.gene81660.t1.exon8;Parent=MS.gene81660.t1
chr5.1 CDS 66830052 66830198 66830052 ID=cds.MS.gene81660.t1;Parent=MS.gene81660.t1
chr5.1 exon 66829785 66829962 66829785 ID=MS.gene81660.t1.exon9;Parent=MS.gene81660.t1
chr5.1 CDS 66829785 66829962 66829785 ID=cds.MS.gene81660.t1;Parent=MS.gene81660.t1
Gene Sequence

>MS.gene81660

ATGGCGAAACTCTCATTCATTGCTGTAACTATCTTTCTCTTCAACAATCTCATCCTTTCTCACGCTCTCTACGGTTCTTCCTCACCTGTTCTTCAACTCACTCCTAACAACTTCAAGTCCAAGGTTTAATCTTTTTTCAATTTTTCATTGACCCAGTTCGTGATCCCACTTTTTTAGCTGGTATTTTCAAATGGGTATTGCGTAGAATTGTTAAATTTTGTAGTTTTATCCTTGAAAACTATCTGGGTGTTTTGTGTTTGGAATTTTGCTATGTTGCTGTATTGTGGTGTTTCTGTTTTTGTTGATTAGTGTGTGAATATGGTTGATTTTATGATTCTGGGTTTTGTGGAATTACAATTTTTTGATTTGTGTGATATATATAATGTAACAAATCTGTTGATTCATACTATTATGCAAGTATGTGTTAATGTTGTGTTTTATCATCTGAAAAGATCTTTTAATTCATGTGTTAATATTATGCCATAAAGCACCGGCACTCTTCGGATTAGGCGTGTCCGACACAGACACTGACACATTTGTTTACATGGAATTATGTCATTTTCTAAAATTATTATCGGTTTCCACATGTCAGTGTCCATGTCGTATTAGGTGTCCGTGCTTTCATAGATGTTGTGTATGTTTCGTTCTGTGGTGAGAAAAATTGATTTTGAAAGAATTGATTATGTGAAATTGATTAGCACTAAAATTTAGTTGAAGGTAAAGTGATTTTATGTTTGGATAGGTTCATGTAAAAGTGAGGTGAACAATAAATTTGAGTGTAAAAAACAATACCAGAATTAGAAGCTACAATTTCCAGCTTCAAGTAGAATCTACTTTGGAGGCAAAATCAATTATACTCTAAAAAAAATTCTAGAATTAGAAGCTACAATTTCCAGCTTCAAGTAGAATCTATTTTGAAGGCAAAATAAATTCTACTCTAGGTGATTCATTAAGGACGTTTCGATTTAATCATAACTACTTCTAAAGTCACACATATGATTGCATGTGATTCATTGCTGTAAATATTTTTATACTAACTAAACTCAAATTAAGGTCTGTTTGGATTGTTTTATATGAACTTATCTATTTACATTAGCACTTATAAGACTGTTTGAGAGAACTTACGAAAATTGCTCATGACGTGTCCATAAGTTGTTTTCCCCTTATGTATAAAGATAAATTATACATATGCACTTAATTAAGTTGTTTATCCAAACAGTCTTTTATACTATTGTATTATGATTGGACTTTGATATGATGAAATACGAGTCCCTCCCCAAGAAAATACGAATAATTTTTATGAGTTAGCTTTTTCTTTGCTTTATCTAGTTTGTAATGCATCAGGTTTTTATGGGTGCCATTTTGAATAATGTCAGGTTCTGAATTCAAATGGAGTTGTTCTTGTTGAATTCTTTGCTCCATGGTGCGGGCACTGTAAGGCTCTGACTCCTATATGGGAGAAGGCAGCTACTGTATTAAAGGGTGTAGTTACTGTTGCAGCACTTGATGCTGATGCTCACCAATCTCTGGCTCAGGTTTTCCATTGTTCATTTCTTCATTCCTCAGATTCAGTATTTAAATTTAAATGACATATATTAAAGTAAGACTATGCTGCATGTGTTGTTTTCATCTTACATTTAACCTTTATGAATATTATGTGTTATTATATGTTTCACATTTCTGTACAATGTACACTGGAAATACATACCTTTGATGGACCACGGACGATGCAAAACATGGTATTGAACCTGTTTAGATTGGTTTATTCGAGTTAACTATTGACATAAGTACCTGTTAGACAGTTAGGGAAAGTTTATGAAAACTGTGTATGACATGTTCATAAGCTCTATGATAACTTATGAAAACAGCTTATAGCTTATATGAAAAACAGGTTGAATTTGTTTTATCTTTTTTATAGAAATAGTTTCTACATAAACACTTGTATGATAAGTGCTTAATTAAGTTGTTAATCCCAATAGGGTCAAGTGTCCTCCTGTAACTAACGTCATCATTTTGATCATTTTAGATATAAAATTGTTTGATGTTTTAGGGCATGCCCAAGATCCTACCATGCTCTACATATTGTATATCCTTATATGTAAAGTTTTTCCTTCGTTACATTCCTAGTCTTCCCATTCTATGTAAAGCAACCAAAGAATAAATTACATTAGTGAATAAGAATATGTTTGTTGAGATTATTTATTTTCCTGTCGCTTACATGACATTTGTTATTGTTTGCATGATGAAATATTTATTCATCTAATGCTTGTATCTTTCTCCTGTTATGATTTACATGTTCGGCTATTTTCTTCATTTATTTTATTATAACTGTAAATTGCAAAATTTGAAAAAATCATTTAGATTTTTGTGTCTTTTCTTAATTCCCTTCAGGAATATGGTATTAGAGGATTTCCAACTATAAAGGTGTTTGCACCTGGAAAACCACCAGTTGATTACCAAGGAGCCAGAGATGTTAAACCAATCGCAGAATATGCACTTCAACAGGTTTGTTGGAATCTCTTCTTGGATGTTTTAACATTTCCCTCCTTAAAGTTTCAATCAAATATTTCCAACATGTGTAGTGTTACAATTTGGATTTTGGATAGAGTAGATAGATGTCTTCTTTTTGTGGAAAACAACAATTTCTTGTACTTTTATGAAAAATTACTACAAATAAAGGAGAATTTGATTAATAACTTGAAAGGGAAACTCTTCTTGCAACATCACTTGGTAGTGTACAAAATTTCAGCAGTGAGAATATCAATGTATTGGGATTAGGGTTGACTGTTCAGTGACTACTGCTTGTAATATTGTGTGATTATAGTTTATTTGCATGTACAGGTAAAGGCTCTTTTGAAGGAACGGTTAAATGGAAAAGCAACAGGTGGATCAAATGAAAAAAAAGAAACCACCGCTTCTTCTTCGGTAGAACTAAACTCTAGTAACTTCGATGAATTGGTTATCAAAAGCAAAGAACTTTGGATTGTAGAATTTTTCGCACCTTGGTGAGTACTTCCTATATTTCAATTATTTATTACCTGACTGAACATGTAATTCTACTTTCAGATTTGCAGTTTCTAAATCTAATAACAACTTTTGTCTTTTTTTTATTTCTCAAAGGTGTGGCCATTGTAAAAAATTAGCTCCTGAGTGGAAAAGAGCATCCAATAATTTGAAAGGGAAGGTTAAACTGGGTCATGTTGACTGTGATGCTGACAAGGTAAGCTTATGGAGTATATCTAATCTCATAGTAGTTAATAAAAATTAGAATCAGTTTCGTCAAATAGCGGCTATAGCGTAGCAGAATTTTAACAAACTGTTATTGTTCGGTGATATACAATTTAGCAAGTGTTGTCAAATAGCCAGCTATAGAAGCACTATAGCACTGTAGTGGAACTTTAACAAACCGCTATTTTTTGCTATCTGCATGATGATCAAGATGATCTCAACCTTACTTTTCAATTTATTTATATTATTAGTGTTCAATATTAAGCTTTTTATTCTGCCTTTCAGTTTATATTATTCTGACAGGATAATTTTTTTGTCAGTCTCTAATGAGCAGGTTCAATGTTCAAGGATTCCCAACAATCTTGGTATTTGGAGCCGATAAAGATACTCCAATTCCTTACGAGGGTGCTAGAACTGCATCAGCCATCGAATCATTCGCACTAGAGCAGCTGGAAACAAATGTTGCTCCTCCAGAAGTGACAGAGCTATATAGTCCAGTGAGTGTTTGTTCTCCTGCAAACTTTACTTGATTGTACACTGATTTGAAAGAAAGAATATAAGATATAAACATGAGTGTTGTCTATAGGATGTTTTGGAAGAGAAATGTGGTTCTGCTGCTATCTGTTTTGTTTCCTTCCTTCCCGACATTTTGGATTCCAAGGCGGAGGGGAGAAACAGATACCTTCAGCAGTTATTAACAGTTGCAGAGAAGTTCAAAAGGAGTCCTTACAGGCAAGTAAAAAAACATTTTGCTTACATTTCATAGTTCATACTTTCACATCCCTCTATGACTCATGAGTTAATCTTTCAAATTCAACTTTTTCGGTTTATACTATTGATTTTGTAAATGCTTTACAGACATGTTTAAATCAAGATAAAAGGCAACATGCATTGTCAGTGTAAACTAGTTTTACACTGACGTTCAATGTGAATCGTGCATGTTGCAGTTATTTTTAAATTGCGGTTGCAAAGTGTACTTACATGGAAATATAATGGGTTCTCATTGGATATCAGTGTAAAACTATTTTGCACCAACAATGCATCTTCATCAAACTCTTAAATCAGTCTTTGTTGACGAATGCTTAATGGTTTTTTGTTTGAATTTGGGTCTTGAACAGCTATGTATGGGCAGCTGCCGGTAAGCAGCCAGACCTTGAGCAGAAAGTTGGTGTTGGTGGGTATGGTTATCCAGCATTAGTAGCCTTGAACGTTAAGAAAGGTGTTTATGCTCCTCTCAAGAGTGCTTTTGAACTTGACCAAATTATGTAAGTCTATTTTTCTAATTTTATGCTAAATAGTTGGCGCTTTACTGAAGCAAACAAGTACTTGAACTTTATTGATTTGTTTTCTTCAGAGAATTTGTGAAAGAAGCTGGACGTGGAGGCAAAGGGAACTTGCCCCTAGGTGACACTCCTCCCACCATTGTAAAGACAGAACCATGGGATGGAAAAGATGGAGAAATAATTGAGGAAGATGAATTTTCTCTTGAAGAACTCATGGGAGATGATGCCTCAACCAAAGATGAACTATAA

Protein sequence

>MS.gene81660.t1

MAKLSFIAVTIFLFNNLILSHALYGSSSPVLQLTPNNFKSKVLNSNGVVLVEFFAPWCGHCKALTPIWEKAATVLKGVVTVAALDADAHQSLAQEYGIRGFPTIKVFAPGKPPVDYQGARDVKPIAEYALQQVKALLKERLNGKATGGSNEKKETTASSSVELNSSNFDELVIKSKELWIVEFFAPWCGHCKKLAPEWKRASNNLKGKVKLGHVDCDADKSLMSRFNVQGFPTILVFGADKDTPIPYEGARTASAIESFALEQLETNVAPPEVTELYSPDVLEEKCGSAAICFVSFLPDILDSKAEGRNRYLQQLLTVAEKFKRSPYSYVWAAAGKQPDLEQKVGVGGYGYPALVALNVKKGVYAPLKSAFELDQIIEFVKEAGRGGKGNLPLGDTPPTIVKTEPWDGKDGEIIEEDEFSLEELMGDDASTKDEL