AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98540.t1 MTR_5g084930 98.851 435 5 0 1 435 1 435 0.0 882
MS.gene98540.t1 MTR_2g021750 84.962 133 20 0 1 133 1 133 5.75e-73 233
MS.gene98540.t1 MTR_2g021750 44.037 109 60 1 156 264 26 133 2.14e-23 100
MS.gene98540.t1 MTR_7g112040 33.824 272 154 8 1 267 3 253 3.29e-40 147
MS.gene98540.t1 MTR_7g112040 42.308 130 67 4 157 280 23 150 2.64e-21 95.1
MS.gene98540.t1 MTR_1g087520 35.000 240 136 5 33 267 34 258 1.34e-39 146
MS.gene98540.t1 MTR_1g087520 40.541 148 70 4 28 172 147 279 2.18e-24 103
MS.gene98540.t1 MTR_1g087520 40.625 128 68 4 163 284 34 159 2.89e-19 89.4
MS.gene98540.t1 MTR_1g096790 40.351 114 59 4 30 136 28 139 7.60e-17 82.8
MS.gene98540.t1 MTR_1g096790 28.700 223 135 5 163 382 31 232 3.91e-15 77.4
MS.gene98540.t1 MTR_3g088220 34.884 172 93 7 163 329 38 195 1.54e-16 82.0
MS.gene98540.t1 MTR_3g088220 41.284 109 57 4 30 132 35 142 1.69e-16 82.0
MS.gene98540.t1 MTR_3g088220 33.333 105 68 1 26 128 375 479 1.04e-11 67.0
MS.gene98540.t1 MTR_2g094180 41.600 125 65 4 135 256 55 174 1.66e-14 75.9
MS.gene98540.t1 MTR_2g094180 51.220 82 38 2 30 110 80 160 3.83e-13 71.6
MS.gene98540.t1 MTR_2g094180 27.184 206 132 6 64 259 322 519 1.47e-11 66.6
MS.gene98540.t1 MTR_2g094180 32.609 138 87 3 36 169 424 559 1.71e-11 66.6
MS.gene98540.t1 MTR_8g059015 41.463 82 48 0 30 111 73 154 2.92e-14 71.2
MS.gene98540.t1 MTR_8g059015 25.654 191 122 6 72 259 2 175 8.39e-13 67.0
MS.gene98540.t1 MTR_2g079420 26.846 149 99 2 107 245 9 157 8.15e-14 69.7
MS.gene98540.t1 MTR_2g079420 34.653 101 66 0 11 111 51 151 3.36e-13 67.8
MS.gene98540.t1 MTR_2g093680 28.814 118 81 2 17 132 29 145 1.23e-13 68.9
MS.gene98540.t1 MTR_2g093680 28.333 120 83 2 156 273 37 155 5.03e-12 64.3
MS.gene98540.t1 MTR_1g114290 34.483 116 72 2 24 138 64 176 1.48e-13 69.3
MS.gene98540.t1 MTR_1g114290 30.631 111 73 1 153 263 63 169 7.08e-13 67.4
MS.gene98540.t1 MTR_1g098660 32.558 86 58 0 34 119 66 151 6.87e-13 67.0
MS.gene98540.t1 MTR_1g098660 29.808 104 66 3 166 268 68 165 2.72e-11 62.4
MS.gene98540.t1 MTR_2g079340 41.975 81 47 0 31 111 37 117 9.32e-13 66.2
MS.gene98540.t1 MTR_2g079340 36.620 71 45 0 167 237 43 113 3.34e-11 62.0
MS.gene98540.t1 MTR_4g059450 48.421 95 40 5 30 120 102 191 1.52e-12 69.7
MS.gene98540.t1 MTR_2g079400 37.234 94 59 0 18 111 22 115 7.67e-12 63.2
MS.gene98540.t1 MTR_3g089065 35.632 87 56 0 33 119 73 159 9.78e-12 63.9
MS.gene98540.t1 MTR_4g080800 32.967 91 52 2 160 242 143 232 2.14e-11 65.9
MS.gene98540.t1 MTR_4g085880 36.905 84 50 1 31 111 63 146 5.92e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98540.t1 AT1G04980 72.748 444 111 4 1 435 5 447 0.0 680
MS.gene98540.t1 AT2G32920 74.178 426 105 4 14 435 16 440 0.0 656
MS.gene98540.t1 AT2G47470 36.250 240 133 5 33 267 28 252 4.68e-44 155
MS.gene98540.t1 AT2G47470 54.369 103 42 3 30 128 143 244 1.57e-27 110
MS.gene98540.t1 AT2G47470 39.370 127 71 3 163 284 28 153 1.16e-19 89.0
MS.gene98540.t1 AT2G47470 36.250 240 133 5 33 267 28 252 1.07e-43 156
MS.gene98540.t1 AT2G47470 54.369 103 42 3 30 128 143 244 1.74e-27 112
MS.gene98540.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.59e-19 89.0
MS.gene98540.t1 AT2G47470 36.250 240 133 5 33 267 28 252 1.15e-43 155
MS.gene98540.t1 AT2G47470 54.369 103 42 3 30 128 143 244 1.62e-27 112
MS.gene98540.t1 AT2G47470 39.370 127 71 3 163 284 28 153 2.75e-19 88.6
MS.gene98540.t1 AT2G47470 36.250 240 133 5 33 267 28 252 1.53e-43 156
MS.gene98540.t1 AT2G47470 54.369 103 42 3 30 128 143 244 1.86e-27 112
MS.gene98540.t1 AT2G47470 39.370 127 71 3 163 284 28 153 3.02e-19 89.4
MS.gene98540.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.08e-18 88.6
MS.gene98540.t1 AT3G54960 28.182 220 136 6 163 380 104 303 2.62e-15 78.2
MS.gene98540.t1 AT3G54960 46.154 91 48 1 30 120 101 190 1.44e-18 88.6
MS.gene98540.t1 AT3G54960 28.182 220 136 6 163 380 104 303 3.36e-15 78.2
MS.gene98540.t1 AT3G54960 37.363 91 49 2 36 126 445 527 3.56e-11 65.5
MS.gene98540.t1 AT5G60640 36.493 211 111 10 30 226 105 306 2.36e-17 84.7
MS.gene98540.t1 AT5G60640 42.424 99 49 4 161 256 106 199 4.31e-15 77.8
MS.gene98540.t1 AT5G60640 26.733 202 130 5 68 259 351 544 5.91e-12 68.2
MS.gene98540.t1 AT5G60640 36.493 211 111 10 30 226 105 306 2.79e-17 84.3
MS.gene98540.t1 AT5G60640 42.424 99 49 4 161 256 106 199 5.56e-15 77.4
MS.gene98540.t1 AT5G60640 26.633 199 129 5 62 252 346 535 2.65e-11 65.9
MS.gene98540.t1 AT5G60640 36.493 211 111 10 30 226 105 306 2.96e-17 84.3
MS.gene98540.t1 AT5G60640 42.424 99 49 4 161 256 106 199 3.44e-15 78.2
MS.gene98540.t1 AT5G60640 34.737 95 60 1 167 259 386 480 3.86e-11 65.5
MS.gene98540.t1 AT1G21750 40.367 109 58 4 30 132 32 139 3.83e-17 84.0
MS.gene98540.t1 AT1G21750 35.849 106 62 3 163 263 35 139 9.31e-15 76.6
MS.gene98540.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.14e-12 70.1
MS.gene98540.t1 AT1G21750 40.367 109 58 4 30 132 32 139 4.00e-17 84.0
MS.gene98540.t1 AT1G21750 29.518 166 99 5 163 323 35 187 1.02e-14 76.6
MS.gene98540.t1 AT1G21750 37.113 97 59 1 26 120 372 468 1.02e-12 70.1
MS.gene98540.t1 AT1G21750 35.577 104 64 2 165 266 381 483 3.15e-11 65.5
MS.gene98540.t1 AT1G77510 28.421 190 117 6 152 336 23 198 1.34e-16 82.4
MS.gene98540.t1 AT1G77510 39.450 109 59 4 30 132 31 138 2.99e-16 81.3
MS.gene98540.t1 AT1G77510 27.165 254 157 11 14 252 227 467 5.37e-11 65.1
MS.gene98540.t1 AT1G07960 30.000 120 81 2 28 144 25 144 1.60e-14 71.2
MS.gene98540.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.66e-14 68.9
MS.gene98540.t1 AT1G07960 30.000 120 81 2 28 144 25 144 1.60e-14 71.2
MS.gene98540.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.66e-14 68.9
MS.gene98540.t1 AT1G07960 30.000 120 81 2 28 144 25 144 1.60e-14 71.2
MS.gene98540.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.66e-14 68.9
MS.gene98540.t1 AT1G07960 30.000 120 81 2 28 144 25 144 1.60e-14 71.2
MS.gene98540.t1 AT1G07960 25.439 114 82 2 154 265 21 133 8.66e-14 68.9
MS.gene98540.t1 AT1G35620 40.426 94 51 3 30 120 34 125 2.28e-14 75.1
MS.gene98540.t1 AT1G35620 27.966 236 138 10 155 383 29 239 8.94e-14 73.2
MS.gene98540.t1 AT1G43560 37.209 86 54 0 34 119 64 149 1.61e-13 68.9
MS.gene98540.t1 AT1G76760 31.429 105 68 1 34 138 69 169 2.01e-13 68.6
MS.gene98540.t1 AT4G03520 36.082 97 59 2 151 245 74 169 3.60e-12 65.5
MS.gene98540.t1 AT1G50320 30.000 150 89 4 121 263 30 170 3.82e-12 65.1
MS.gene98540.t1 AT3G15360 36.667 90 57 0 30 119 88 177 4.95e-12 65.1
MS.gene98540.t1 AT4G27080 32.000 125 67 4 126 242 118 232 2.32e-11 65.9
MS.gene98540.t1 AT4G27080 32.000 125 67 4 126 242 170 284 2.83e-11 65.9
MS.gene98540.t1 AT1G03680 26.923 156 94 4 110 245 8 163 2.93e-11 62.4
MS.gene98540.t1 AT3G20560 34.000 100 57 2 151 242 134 232 9.37e-11 63.9

Find 112 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTCCCTTTCAAATTAT+TGG 0.104762 5.2:+72411579 None:intergenic
TTCCCAACAATCTTGGTATT+TGG 0.173156 5.2:-72411162 MS.gene98540:CDS
CTTAATTCCTTTCAGGAATA+TGG 0.176621 5.2:-72412365 MS.gene98540:intron
TTCCTTCCTTCCCGACATTT+TGG 0.184244 5.2:-72410882 MS.gene98540:CDS
CTCTAGTAACTTCGATGAAT+TGG 0.285509 5.2:-72411806 MS.gene98540:CDS
GAAGGCAGCCACTGTGTTAA+AGG 0.292239 5.2:-72413341 MS.gene98540:CDS
CTATATAGCTCTGTCACTTC+TGG 0.297987 5.2:+72411042 None:intergenic
GTTTCCTTATAGTTCATCTT+TGG 0.305542 5.2:+72409997 None:intergenic
TTTCAGGAATATGGTATTAG+AGG 0.309619 5.2:-72412356 MS.gene98540:intron
TTTGAAAGGGAAGGTTAAAC+TGG 0.309941 5.2:-72411572 MS.gene98540:CDS
GTAAGGCTCTGACTCCTATA+TGG 0.316417 5.2:-72413366 MS.gene98540:CDS
CTCAAGGTCTGGCTGCTTAC+CGG 0.356762 5.2:+72410377 None:intergenic
TGCCGAATTCGCACTTCAAC+AGG 0.358905 5.2:-72412258 MS.gene98540:intron
AACCTGTTGAAGTGCGAATT+CGG 0.359545 5.2:+72412256 None:intergenic
GGCAATTGGTTTAACATCTC+TGG 0.362839 5.2:+72412277 None:intergenic
TAGAGGATTTCCAACTATAA+AGG 0.370686 5.2:-72412339 MS.gene98540:CDS
AACACCTTTCTTAACGTTCA+AGG 0.373568 5.2:+72410311 None:intergenic
TCAACCAAAGATGAACTATA+AGG 0.387123 5.2:-72410001 None:intergenic
AAAGTTGGTGTTGGTGGGTA+TGG 0.390826 5.2:-72410351 MS.gene98540:CDS
GGGTCTTGAACAGCTATGTA+TGG 0.397598 5.2:-72410407 MS.gene98540:intron
CTAGCACCCTCGTAAGGAAT+TGG 0.409040 5.2:+72411123 None:intergenic
TCAAGGATTCCCAACAATCT+TGG 0.416145 5.2:-72411169 MS.gene98540:CDS
TCCATGGTGCGGGCACTGTA+AGG 0.416505 5.2:-72413383 MS.gene98540:CDS
ACCTTGGACTTGAAGTTGTT+AGG 0.419712 5.2:+72414836 None:intergenic
TTGTTGAATTCTTTGCTCCA+TGG 0.424265 5.2:-72413399 MS.gene98540:CDS
TGCTGATGCTCACCAATCTC+TGG 0.427343 5.2:-72413293 MS.gene98540:CDS
AGTTCAAAAGGAGTCCTTAC+AGG 0.430959 5.2:-72410802 MS.gene98540:intron
CTGGCTCCTTGGTAATCAAC+TGG 0.433932 5.2:+72412296 None:intergenic
AGGAATTGGAGTATCTTTAT+CGG 0.435399 5.2:+72411137 None:intergenic
AGAAACCACCGCTTCTTCTT+CGG 0.438238 5.2:-72411839 MS.gene98540:CDS
TCTGTTTCTCCCCTCCGCCT+TGG 0.439079 5.2:+72410856 None:intergenic
AGAGAATTTGTGAAAGAAGC+TGG 0.439854 5.2:-72410160 MS.gene98540:CDS
GTGTTGTCTATAGGATGTTT+TGG 0.440808 5.2:-72410939 MS.gene98540:intron
TGAAGTGCGAATTCGGCAAT+TGG 0.441042 5.2:+72412263 None:intergenic
TTATCAAAAGCAAAGAACTT+TGG 0.443575 5.2:-72411783 MS.gene98540:CDS
TTTGTCAGTCTCTAATGAGC+AGG 0.447245 5.2:-72411200 MS.gene98540:intron
GGTGCAAACACCTTTATAGT+TGG 0.448420 5.2:+72412329 None:intergenic
CCAACTTTCTGCTCAAGGTC+TGG 0.450805 5.2:+72410366 None:intergenic
AACCGTAGAGAGCGTGAGAA+AGG 0.451953 5.2:+72414885 None:intergenic
TGCTCACCAATCTCTGGCTC+AGG 0.454025 5.2:-72413287 MS.gene98540:intron
GTTTAACATCTCTGGCTCCT+TGG 0.454708 5.2:+72412285 None:intergenic
ATGAGCAGGTTCAATGTTCA+AGG 0.456443 5.2:-72411186 MS.gene98540:CDS
AATTCTTTGCTCCATGGTGC+GGG 0.458259 5.2:-72413393 MS.gene98540:CDS
ATCATTCGCACTAGAGCAGC+TGG 0.462465 5.2:-72411082 MS.gene98540:CDS
TTATAGTTCATCTTTGGTTG+AGG 0.465932 5.2:+72410003 None:intergenic
TGACAGGTTCTGAATTCAAA+TGG 0.467668 5.2:-72413430 MS.gene98540:intron
CTCCAAATACCAAGATTGTT+GGG 0.472339 5.2:+72411160 None:intergenic
GGAAAACCTGAGCCAGAGAT+TGG 0.473756 5.2:+72413281 None:intergenic
CGGTTAAATGGAAAAGCAAC+AGG 0.474554 5.2:-72411880 MS.gene98540:CDS
GCTCCAAATACCAAGATTGT+TGG 0.479181 5.2:+72411159 None:intergenic
AGTGAGTTGAAGAACGGGTG+AGG 0.481557 5.2:+72414859 None:intergenic
ACGTTCAAGGCTACTAATGC+TGG 0.481617 5.2:+72410324 None:intergenic
ATCCTTTCTCACGCTCTCTA+CGG 0.482498 5.2:-72414887 MS.gene98540:CDS
CAGTTGCAGAGAAGTTCAAA+AGG 0.484219 5.2:-72410814 MS.gene98540:CDS
GTGGCTGCCTTCTCCCATAT+AGG 0.489604 5.2:+72413352 None:intergenic
GGTTCTGTCTTTACAATGGT+GGG 0.490337 5.2:+72410097 None:intergenic
ACTATAAAGGTGTTTGCACC+TGG 0.493971 5.2:-72412326 MS.gene98540:CDS
GCCTTGGAATCCAAAATGTC+GGG 0.495320 5.2:+72410872 None:intergenic
TTAGGAGTGAGTTGAAGAAC+GGG 0.495568 5.2:+72414854 None:intergenic
GAACCATGGGATGGAAAAGA+TGG 0.495841 5.2:-72410079 MS.gene98540:CDS
TGGTTCTGTCTTTACAATGG+TGG 0.496152 5.2:+72410096 None:intergenic
AGAGCATCCAATAATTTGAA+AGG 0.498898 5.2:-72411586 MS.gene98540:CDS
GTTAGGAGTGAGTTGAAGAA+CGG 0.501891 5.2:+72414853 None:intergenic
CGCCTTGGAATCCAAAATGT+CGG 0.513014 5.2:+72410871 None:intergenic
AAGGCAGCCACTGTGTTAAA+GGG 0.515149 5.2:-72413340 MS.gene98540:CDS
GAAGCTGGACGTGGAGGCAA+AGG 0.515570 5.2:-72410145 MS.gene98540:CDS
GAGCATCCAATAATTTGAAA+GGG 0.518744 5.2:-72411585 MS.gene98540:CDS
TGGTGGGAGGAGTGTCACCT+AGG 0.522614 5.2:+72410113 None:intergenic
ATCCAATAATTTGAAAGGGA+AGG 0.529134 5.2:-72411581 MS.gene98540:CDS
TAAGGCTCTGACTCCTATAT+GGG 0.533987 5.2:-72413365 MS.gene98540:CDS
CCAGACCTTGAGCAGAAAGT+TGG 0.535182 5.2:-72410366 MS.gene98540:CDS
GGTGGGAGGAGTGTCACCTA+GGG 0.535529 5.2:+72410114 None:intergenic
GAATTCTTTGCTCCATGGTG+CGG 0.548779 5.2:-72413394 MS.gene98540:CDS
GAGCAGAAAGTTGGTGTTGG+TGG 0.549595 5.2:-72410357 MS.gene98540:CDS
TCCTAACAACTTCAAGTCCA+AGG 0.552476 5.2:-72414837 MS.gene98540:intron
ATCCAAAATGTCGGGAAGGA+AGG 0.552840 5.2:+72410880 None:intergenic
CCATGGTTCTGTCTTTACAA+TGG 0.553296 5.2:+72410093 None:intergenic
GTAGCCTTGAACGTTAAGAA+AGG 0.556407 5.2:-72410315 MS.gene98540:CDS
CTCTAGTGCGAATGATTCGA+TGG 0.558140 5.2:+72411089 None:intergenic
GGTCTTGAACAGCTATGTAT+GGG 0.559621 5.2:-72410406 MS.gene98540:intron
AAAAGATGGAGAAATAATTG+AGG 0.562273 5.2:-72410065 MS.gene98540:CDS
GCCTTACAGTGCCCGCACCA+TGG 0.567839 5.2:+72413382 None:intergenic
CAACTGTTAATAACTGCTGA+AGG 0.571823 5.2:+72410831 None:intergenic
GCAGTTCTAGCACCCTCGTA+AGG 0.576634 5.2:+72411117 None:intergenic
CAACACCAACTTTCTGCTCA+AGG 0.577087 5.2:+72410361 None:intergenic
GCTCCTTGGTAATCAACTGG+TGG 0.580906 5.2:+72412299 None:intergenic
AGCAGAAAGTTGGTGTTGGT+GGG 0.581032 5.2:-72410356 MS.gene98540:CDS
AAGCTGGACGTGGAGGCAAA+GGG 0.583780 5.2:-72410144 MS.gene98540:CDS
TTTGTGAAAGAAGCTGGACG+TGG 0.587104 5.2:-72410154 MS.gene98540:CDS
AGCTATGTATGGGCAGCTGC+CGG 0.590014 5.2:-72410396 MS.gene98540:CDS
GGTTCTGAATTCAAATGGAG+TGG 0.590632 5.2:-72413425 MS.gene98540:CDS
TCTGACTCCTATATGGGAGA+AGG 0.598675 5.2:-72413359 MS.gene98540:CDS
TCTGTCTTTACAATGGTGGG+AGG 0.605063 5.2:+72410100 None:intergenic
TAGTTCTACCGAAGAAGAAG+CGG 0.621191 5.2:+72411831 None:intergenic
AGTTCAAAAGCACTCTTGAG+AGG 0.621890 5.2:+72410282 None:intergenic
CATTGTAAAGACAGAACCAT+GGG 0.623172 5.2:-72410092 MS.gene98540:CDS
TTCTACCGAAGAAGAAGCGG+TGG 0.624355 5.2:+72411834 None:intergenic
GGCAAAGGGAACTTGCCCCT+AGG 0.627464 5.2:-72410130 MS.gene98540:CDS
CTTGAGCAGAAAGTTGGTGT+TGG 0.628583 5.2:-72410360 MS.gene98540:CDS
TTGAAAGGGAAGGTTAAACT+GGG 0.631529 5.2:-72411571 MS.gene98540:CDS
TGGAATCCAAAATGTCGGGA+AGG 0.635224 5.2:+72410876 None:intergenic
GATACTCCAATTCCTTACGA+GGG 0.636183 5.2:-72411129 MS.gene98540:CDS
TGTTGACTGTGATGCTGACA+AGG 0.636371 5.2:-72411545 MS.gene98540:intron
GTAAAGACAGAACCATGGGA+TGG 0.640244 5.2:-72410088 MS.gene98540:CDS
TATAGCTCTGTCACTTCTGG+AGG 0.640322 5.2:+72411045 None:intergenic
GTGAAAGAAGCTGGACGTGG+AGG 0.650513 5.2:-72410151 MS.gene98540:CDS
TTAAATGGAAAAGCAACAGG+TGG 0.661631 5.2:-72411877 MS.gene98540:CDS
AGATACTCCAATTCCTTACG+AGG 0.665654 5.2:-72411130 MS.gene98540:CDS
GTGGGAGGAGTGTCACCTAG+GGG 0.673404 5.2:+72410115 None:intergenic
CCATTGTAAAGACAGAACCA+TGG 0.708421 5.2:-72410093 MS.gene98540:CDS
AAACCACCAGTTGATTACCA+AGG 0.716041 5.2:-72412302 MS.gene98540:CDS
AACTACACCCTTTAACACAG+TGG 0.729872 5.2:+72413333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTGAAAAAAAAAATTAAT+AGG - chr5.2:72410450-72410469 MS.gene98540:intron 10.0%
!! GTAATAAATAATTGAAATAT+AGG + chr5.2:72413217-72413236 None:intergenic 10.0%
!! TAATATTATTGTATTATGAT+TGG - chr5.2:72411364-72411383 MS.gene98540:intron 10.0%
!!! AAAATTATTCATATTTTCTT+TGG + chr5.2:72411419-72411438 None:intergenic 10.0%
!!! AAATTATTCATATTTTCTTT+GGG + chr5.2:72411418-72411437 None:intergenic 10.0%
!!! GAAAAAATAATTTAGATTTT+TGG - chr5.2:72412546-72412565 MS.gene98540:intron 10.0%
!! AAAAATAGACTTACATAATT+TGG + chr5.2:72414688-72414707 None:intergenic 15.0%
!! AAATATTTGATTGAAACTTT+AGG + chr5.2:72412749-72412768 None:intergenic 15.0%
!! AATAATATTAAAAGACTGTT+TGG + chr5.2:72411354-72411373 None:intergenic 15.0%
!! AATATTTGATTGAAACTTTA+GGG + chr5.2:72412748-72412767 None:intergenic 15.0%
!! TGAAAAATTACTACAAATAA+AGG - chr5.2:72412854-72412873 MS.gene98540:intron 15.0%
!!! AGAACTAAATTTTAAATGTT+TGG + chr5.2:72410947-72410966 None:intergenic 15.0%
!! AAAAAACAAGCTAAAAAAGT+GGG + chr5.2:72410170-72410189 None:intergenic 20.0%
!! AAATTTAAATACTGAATCTG+AGG + chr5.2:72411704-72411723 None:intergenic 20.0%
!! AATTTGATCAATAACTTGAA+AGG - chr5.2:72412879-72412898 MS.gene98540:intron 20.0%
!! ACACATATTCATATTCATAA+AGG + chr5.2:72411785-72411804 None:intergenic 20.0%
!! ATATTTGATTGAAACTTTAG+GGG + chr5.2:72412747-72412766 None:intergenic 20.0%
!! ATTGAAAAAAGATTAAACCT+TGG + chr5.2:72410124-72410143 None:intergenic 20.0%
!! ATTTGATCAATAACTTGAAA+GGG - chr5.2:72412880-72412899 MS.gene98540:intron 20.0%
!! CATGTTTAAATCAAGATAAA+AGG - chr5.2:72414288-72414307 MS.gene98540:intron 20.0%
!! CGTTAATGTAATATATTCTA+TGG + chr5.2:72412353-72412372 None:intergenic 20.0%
!! TAATTAAGCACTTATCATAT+AGG + chr5.2:72412112-72412131 None:intergenic 20.0%
!! TACTAACTAAACTCAAATAA+AGG - chr5.2:72411114-72411133 MS.gene98540:CDS 20.0%
!! TACTTACATGGAAATATAAT+GGG - chr5.2:72414403-72414422 MS.gene98540:intron 20.0%
!! TAGCAATAAAATTTAGTTGA+AGG - chr5.2:72410772-72410791 MS.gene98540:intron 20.0%
!! TTTAACAAACTGTTATTGTT+CGG - chr5.2:72413505-72413524 MS.gene98540:intron 20.0%
!!! AATGGTTTTTTGTTTGAATT+TGG - chr5.2:72414513-72414532 MS.gene98540:intron 20.0%
!!! ATATTTAAAATAGTTACAGG+AGG + chr5.2:72412163-72412182 None:intergenic 20.0%
!!! ATGGTTTTTTGTTTGAATTT+GGG - chr5.2:72414514-72414533 MS.gene98540:intron 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr5.2:72412128-72412147 MS.gene98540:intron 20.0%
!!! CACATATTTAAAATAGTTAC+AGG + chr5.2:72412166-72412185 None:intergenic 20.0%
!!! CTAATTTTATGCTAAATAGT+TGG - chr5.2:72414708-72414727 MS.gene98540:intron 20.0%
!!! CTGTAACTATTTTAAATATG+TGG - chr5.2:72412164-72412183 MS.gene98540:intron 20.0%
!!! TAAAGTTGTTTGATGTTTTA+AGG - chr5.2:72412229-72412248 MS.gene98540:intron 20.0%
!!! TCTTTCAAATTCAACTTTTT+CGG - chr5.2:72414232-72414251 MS.gene98540:intron 20.0%
!!! TGTCTTTTTTTATTTCTCAA+AGG - chr5.2:72413296-72413315 MS.gene98540:CDS 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG - chr5.2:72412129-72412148 MS.gene98540:intron 20.0%
!!! TTTAGCTTGTTTTTTCAAAT+TGG - chr5.2:72410175-72410194 MS.gene98540:intron 20.0%
! AAAACAGCTTATAGCTTATT+TGG - chr5.2:72412031-72412050 MS.gene98540:intron 25.0%
! AAAAGATGGAGAAATAATTG+AGG - chr5.2:72414876-72414895 MS.gene98540:CDS 25.0%
! AATATCAATGTATTGGGATT+AGG - chr5.2:72412955-72412974 MS.gene98540:intron 25.0%
! AGGAATGAAGAAATTAACAA+TGG + chr5.2:72411684-72411703 None:intergenic 25.0%
! AGTGAGAATATCAATGTATT+GGG - chr5.2:72412949-72412968 MS.gene98540:intron 25.0%
! ATATCAATGTATTGGGATTA+GGG - chr5.2:72412956-72412975 MS.gene98540:intron 25.0%
! CAAAAGTTTATGTGTATGTT+TGG + chr5.2:72411008-72411027 None:intergenic 25.0%
! GAAAAAACAAGCTAAAAAAG+TGG + chr5.2:72410171-72410190 None:intergenic 25.0%
! GTACTTACATGGAAATATAA+TGG - chr5.2:72414402-72414421 MS.gene98540:intron 25.0%
! TATAGTTTATTTGCATGTAC+AGG - chr5.2:72413018-72413037 MS.gene98540:intron 25.0%
! TATTTGATTGAAACTTTAGG+GGG + chr5.2:72412746-72412765 None:intergenic 25.0%
! TCAAGAGCTTATGAAAATTA+GGG + chr5.2:72411246-72411265 None:intergenic 25.0%
! TCAGAACAATATAAACTCAA+AGG + chr5.2:72413709-72413728 None:intergenic 25.0%
! TTATAGCTTATTTGGAAAAC+AGG - chr5.2:72412039-72412058 MS.gene98540:intron 25.0%
! TTATCAAAAGCAAAGAACTT+TGG - chr5.2:72413158-72413177 MS.gene98540:intron 25.0%
! TTCAAGAGCTTATGAAAATT+AGG + chr5.2:72411247-72411266 None:intergenic 25.0%
!! CAAACATACACATAAACTTT+TGG - chr5.2:72411006-72411025 MS.gene98540:intron 25.0%
!! TAGTGTTACAATTTGGATTT+TGG - chr5.2:72412779-72412798 MS.gene98540:intron 25.0%
!! TATATAGTTTGTAATGCATC+AGG - chr5.2:72411463-72411482 MS.gene98540:intron 25.0%
!! TTATTCATATTTTCTTTGGG+AGG + chr5.2:72411415-72411434 None:intergenic 25.0%
!! TTTTTGCTTGAAAACTATCT+GGG - chr5.2:72410227-72410246 MS.gene98540:intron 25.0%
!!! ATGGTTGATTTTATGATTCT+GGG - chr5.2:72410328-72410347 MS.gene98540:CDS 25.0%
!!! ATTTGTTATTGTTTGCATGA+CGG - chr5.2:72412423-72412442 MS.gene98540:intron 25.0%
!!! TATGGTTGATTTTATGATTC+TGG - chr5.2:72410327-72410346 MS.gene98540:CDS 25.0%
!!! TATTCATATTTTCTTTGGGA+GGG + chr5.2:72411414-72411433 None:intergenic 25.0%
!!! TTTTTTATTTCTCAAAGGTG+TGG - chr5.2:72413301-72413320 MS.gene98540:CDS 25.0%
AACCTTCCCTTTCAAATTAT+TGG + chr5.2:72413365-72413384 None:intergenic 30.0%
AACTCAAATAAAGGTCTGTT+TGG - chr5.2:72411123-72411142 MS.gene98540:CDS 30.0%
ACATGTGTAGTGTTACAATT+TGG - chr5.2:72412772-72412791 MS.gene98540:intron 30.0%
ATCCAATAATTTGAAAGGGA+AGG - chr5.2:72413360-72413379 MS.gene98540:CDS 30.0%
ATGCAGATAGCAAAAAATAG+CGG + chr5.2:72413610-72413629 None:intergenic 30.0%
ATTAACTCATGAGTCATAGA+GGG + chr5.2:72414213-72414232 None:intergenic 30.0%
CAAGAGCTTATGAAAATTAG+GGG + chr5.2:72411245-72411264 None:intergenic 30.0%
CCTGTTATGATTTACATGTT+CGG - chr5.2:72412478-72412497 MS.gene98540:intron 30.0%
CTTAATTCCTTTCAGGAATA+TGG - chr5.2:72412576-72412595 MS.gene98540:intron 30.0%
GAGCATCCAATAATTTGAAA+GGG - chr5.2:72413356-72413375 MS.gene98540:CDS 30.0%
GAGTGAGAATATCAATGTAT+TGG - chr5.2:72412948-72412967 MS.gene98540:intron 30.0%
TACAATGAAGTAAAGTTTGC+AGG + chr5.2:72413944-72413963 None:intergenic 30.0%
TAGAGGATTTCCAACTATAA+AGG - chr5.2:72412602-72412621 MS.gene98540:intron 30.0%
TCGAATAAACCAATCTAAAC+AGG + chr5.2:72411894-72411913 None:intergenic 30.0%
TCTAATACCATATTCCTGAA+AGG + chr5.2:72412586-72412605 None:intergenic 30.0%
TGAGTTTATATTGTTCTGAC+AGG - chr5.2:72413710-72413729 MS.gene98540:intron 30.0%
TTATAGTTCATCTTTGGTTG+AGG + chr5.2:72414941-72414960 None:intergenic 30.0%
TTATTTGCATGTACAGGTAA+AGG - chr5.2:72413024-72413043 MS.gene98540:intron 30.0%
TTCCATGAAAACAAATGTGT+CGG + chr5.2:72410608-72410627 None:intergenic 30.0%
TTTCAGGAATATGGTATTAG+AGG - chr5.2:72412585-72412604 MS.gene98540:intron 30.0%
! AGAGCATCCAATAATTTGAA+AGG - chr5.2:72413355-72413374 MS.gene98540:CDS 30.0%
! AGATAGATGTCTTCTTTTTG+TGG - chr5.2:72412809-72412828 MS.gene98540:intron 30.0%
! AGGAATTGGAGTATCTTTAT+CGG + chr5.2:72413807-72413826 None:intergenic 30.0%
! ATGGTTGCTTTACATAGAAA+GGG + chr5.2:72412334-72412353 None:intergenic 30.0%
! ATTTTCTCTTGAAGAACTCA+TGG - chr5.2:72414906-72414925 MS.gene98540:CDS 30.0%
! CTTTTTGCTTGAAAACTATC+TGG - chr5.2:72410226-72410245 MS.gene98540:intron 30.0%
! GTAATGCATCAGGTTTTTAT+GGG - chr5.2:72411473-72411492 MS.gene98540:intron 30.0%
! GTCTTTTCTTAATTCCTTTC+AGG - chr5.2:72412569-72412588 MS.gene98540:intron 30.0%
! TATGGTTGCTTTACATAGAA+AGG + chr5.2:72412335-72412354 None:intergenic 30.0%
! TATGTTTGGTTTCACTTTAG+AGG + chr5.2:72410994-72411013 None:intergenic 30.0%
! TGTAATGCATCAGGTTTTTA+TGG - chr5.2:72411472-72411491 MS.gene98540:intron 30.0%
! TTTTCTCTTGAAGAACTCAT+GGG - chr5.2:72414907-72414926 MS.gene98540:CDS 30.0%
!! ATTCATATTTTCTTTGGGAG+GGG + chr5.2:72411413-72411432 None:intergenic 30.0%
!! GAAATATAATGGGTTCTCAT+TGG - chr5.2:72414413-72414432 MS.gene98540:intron 30.0%
!!! CAGGAGCTAATTTTTTACAA+TGG + chr5.2:72413327-72413346 None:intergenic 30.0%
!!! TGTCATGTTTCTGTTTTTGT+TGG - chr5.2:72410285-72410304 MS.gene98540:CDS 30.0%
AAATAGATTCTACCTGAAGC+TGG + chr5.2:72410893-72410912 None:intergenic 35.0%
AACACCTTTCTTAACGTTCA+AGG + chr5.2:72414633-72414652 None:intergenic 35.0%
AAGTACCTGTTAGACAGTTA+GGG - chr5.2:72411929-72411948 MS.gene98540:intron 35.0%
AAGTTATCCTAGAGAGCTTA+TGG + chr5.2:72412008-72412027 None:intergenic 35.0%
AATTAGGGGAAAACAGCTTA+TGG + chr5.2:72411231-72411250 None:intergenic 35.0%
ACAAATGTCATGTAAGAGAC+AGG + chr5.2:72412409-72412428 None:intergenic 35.0%
AGAGAATTTGTGAAAGAAGC+TGG - chr5.2:72414781-72414800 MS.gene98540:intron 35.0%
CAACTGTTAATAACTGCTGA+AGG + chr5.2:72414113-72414132 None:intergenic 35.0%
CATAACAGGAGAAAGTTACA+GGG + chr5.2:72412467-72412486 None:intergenic 35.0%
CATTGTAAAGACAGAACCAT+GGG - chr5.2:72414849-72414868 MS.gene98540:CDS 35.0%
CCGAACATGTAAATCATAAC+AGG + chr5.2:72412481-72412500 None:intergenic 35.0%
CTCCAAATACCAAGATTGTT+GGG + chr5.2:72413784-72413803 None:intergenic 35.0%
CTCTAGTAACTTCGATGAAT+TGG - chr5.2:72413135-72413154 MS.gene98540:intron 35.0%
CTTATTTCCATAAGCTCTCT+AGG - chr5.2:72411998-72412017 MS.gene98540:intron 35.0%
GAATCAGTTTCGTCAAATAG+CGG - chr5.2:72413465-72413484 MS.gene98540:intron 35.0%
GACAACACTTCCTACTAAAT+TGG + chr5.2:72413537-72413556 None:intergenic 35.0%
GATTAACTCATGAGTCATAG+AGG + chr5.2:72414214-72414233 None:intergenic 35.0%
GTAAAAAATTAGCTCCTGAG+TGG - chr5.2:72413329-72413348 MS.gene98540:CDS 35.0%
GTAGAATTACATGTTCAGTC+AGG + chr5.2:72413239-72413258 None:intergenic 35.0%
GTTTATCCAAATAGGGTCAA+GGG - chr5.2:72412136-72412155 MS.gene98540:intron 35.0%
GTTTGATGAAGATGCATTGT+TGG + chr5.2:72414463-72414482 None:intergenic 35.0%
TAAGTACCTGTTAGACAGTT+AGG - chr5.2:72411928-72411947 MS.gene98540:intron 35.0%
TACACAACATCTATGAAGCA+TGG + chr5.2:72410694-72410713 None:intergenic 35.0%
TACATACCTTTGATGAACCA+TGG - chr5.2:72411845-72411864 MS.gene98540:CDS 35.0%
TCATAACAGGAGAAAGTTAC+AGG + chr5.2:72412468-72412487 None:intergenic 35.0%
TCGGTGATATCCAATTTAGT+AGG - chr5.2:72413524-72413543 MS.gene98540:intron 35.0%
TGTAGTGTAGTGTGTGAATA+TGG - chr5.2:72410309-72410328 MS.gene98540:CDS 35.0%
TGTTGCAAAGTGTACTTACA+TGG - chr5.2:72414391-72414410 MS.gene98540:intron 35.0%
TGTTTATCCAAATAGGGTCA+AGG - chr5.2:72412135-72412154 MS.gene98540:intron 35.0%
TTAAATGGAAAAGCAACAGG+TGG - chr5.2:72413064-72413083 MS.gene98540:intron 35.0%
TTACATAGAAAGGGAAGACT+AGG + chr5.2:72412325-72412344 None:intergenic 35.0%
TTCCCAACAATCTTGGTATT+TGG - chr5.2:72413779-72413798 MS.gene98540:intron 35.0%
TTGAAAGGGAAGGTTAAACT+GGG - chr5.2:72413370-72413389 MS.gene98540:CDS 35.0%
TTGTTGAATTCTTTGCTCCA+TGG - chr5.2:72411542-72411561 MS.gene98540:intron 35.0%
TTTGAAAGGGAAGGTTAAAC+TGG - chr5.2:72413369-72413388 MS.gene98540:CDS 35.0%
! GCTTCAGGTAGAATCTATTT+TGG - chr5.2:72410893-72410912 MS.gene98540:CDS 35.0%
! GGTATTGAACCTGTTTAGAT+TGG - chr5.2:72411882-72411901 MS.gene98540:CDS 35.0%
! TTGTAGAATTTTTCGCACCT+TGG - chr5.2:72413182-72413201 MS.gene98540:intron 35.0%
!! AATATAGGAAGTACTCACCA+AGG + chr5.2:72413202-72413221 None:intergenic 35.0%
!! CTTTTGAAGGAACGGTTAAA+TGG - chr5.2:72413049-72413068 MS.gene98540:intron 35.0%
!! TAAAGGCTCTTTTGAAGGAA+CGG - chr5.2:72413041-72413060 MS.gene98540:intron 35.0%
!! TCAGGTAGAATCTATTTTGG+AGG - chr5.2:72410896-72410915 MS.gene98540:CDS 35.0%
!! TGACAGGTTCTGAATTCAAA+TGG - chr5.2:72411511-72411530 MS.gene98540:intron 35.0%
!!! GATGTTTTGGAAGAGAAATG+TGG - chr5.2:72414015-72414034 MS.gene98540:intron 35.0%
!!! GTGCTGTTTTGAATAATGAC+AGG - chr5.2:72411495-72411514 MS.gene98540:intron 35.0%
!!! TGTTTTTTTCCTTGCCTGTA+AGG + chr5.2:72414156-72414175 None:intergenic 35.0%
AAAAAAGTGGGATCACGAAC+TGG + chr5.2:72410158-72410177 None:intergenic 40.0%
AAAAAGTGGGATCACGAACT+GGG + chr5.2:72410157-72410176 None:intergenic 40.0%
AAACCACCAGTTGATTACCA+AGG - chr5.2:72412639-72412658 MS.gene98540:intron 40.0%
AACCTGTTGAAGTGCGAATT+CGG + chr5.2:72412688-72412707 None:intergenic 40.0%
AACTACACCCTTTAACACAG+TGG + chr5.2:72411611-72411630 None:intergenic 40.0%
AAGCTACAATTTCCAGCTTC+AGG - chr5.2:72410878-72410897 MS.gene98540:CDS 40.0%
AAGGGAAGACTAGGAATGTA+AGG + chr5.2:72412316-72412335 None:intergenic 40.0%
ACCTTGGACTTGAAGTTGTT+AGG + chr5.2:72410108-72410127 None:intergenic 40.0%
ACTCTTCTTGCAACATCACT+TGG - chr5.2:72412905-72412924 MS.gene98540:intron 40.0%
ACTTTCCCTAACTGTCTAAC+AGG + chr5.2:72411937-72411956 None:intergenic 40.0%
AGATACTCCAATTCCTTACG+AGG - chr5.2:72413811-72413830 MS.gene98540:intron 40.0%
AGTTCAAAAGGAGTCCTTAC+AGG - chr5.2:72414139-72414158 MS.gene98540:intron 40.0%
ATGAGCAGGTTCAATGTTCA+AGG - chr5.2:72413755-72413774 MS.gene98540:intron 40.0%
ATGCTGACAAGGTAAGCTTA+TGG - chr5.2:72413407-72413426 MS.gene98540:CDS 40.0%
ATGTCTAATCCGAAAAGGGT+CGG + chr5.2:72410541-72410560 None:intergenic 40.0%
CAGTTGCAGAGAAGTTCAAA+AGG - chr5.2:72414127-72414146 MS.gene98540:intron 40.0%
CCATTGTAAAGACAGAACCA+TGG - chr5.2:72414848-72414867 MS.gene98540:CDS 40.0%
CGGTTAAATGGAAAAGCAAC+AGG - chr5.2:72413061-72413080 MS.gene98540:intron 40.0%
CTTCGTTGACGAATGCTTAA+TGG - chr5.2:72414495-72414514 MS.gene98540:intron 40.0%
GAAGACTAGGAATGTAAGGA+AGG + chr5.2:72412312-72412331 None:intergenic 40.0%
GATACTCCAATTCCTTACGA+GGG - chr5.2:72413812-72413831 MS.gene98540:intron 40.0%
GATATACAATACGTCGAGCA+TGG + chr5.2:72412271-72412290 None:intergenic 40.0%
GCTCCAAATACCAAGATTGT+TGG + chr5.2:72413785-72413804 None:intergenic 40.0%
GGACATGTCTAATCCGAAAA+GGG + chr5.2:72410545-72410564 None:intergenic 40.0%
GGCAAAATCAATTCGACTCT+AGG - chr5.2:72410917-72410936 MS.gene98540:CDS 40.0%
GGTCTTGAACAGCTATGTAT+GGG - chr5.2:72414535-72414554 MS.gene98540:intron 40.0%
GGTGCAAACACCTTTATAGT+TGG + chr5.2:72412615-72412634 None:intergenic 40.0%
GGTTCTGTCTTTACAATGGT+GGG + chr5.2:72414847-72414866 None:intergenic 40.0%
TCAAGGATTCCCAACAATCT+TGG - chr5.2:72413772-72413791 MS.gene98540:intron 40.0%
TCCTAACAACTTCAAGTCCA+AGG - chr5.2:72410104-72410123 MS.gene98540:CDS 40.0%
TGCTATAGTGCTTCTATAGC+TGG + chr5.2:72413566-72413585 None:intergenic 40.0%
TTTGTCAGTCTCTAATGAGC+AGG - chr5.2:72413741-72413760 MS.gene98540:intron 40.0%
! ACAGGTAAAGGCTCTTTTGA+AGG - chr5.2:72413036-72413055 MS.gene98540:intron 40.0%
! CCATGGTTCTGTCTTTACAA+TGG + chr5.2:72414851-72414870 None:intergenic 40.0%
! CTATATAGCTCTGTCACTTC+TGG + chr5.2:72413902-72413921 None:intergenic 40.0%
! CTATCTGGGTGTTTTGTGTT+TGG - chr5.2:72410241-72410260 MS.gene98540:intron 40.0%
! GGAGCAAAAATTGACTCTAG+AGG + chr5.2:72410973-72410992 None:intergenic 40.0%
! GGCAATTGGTTTAACATCTC+TGG + chr5.2:72412667-72412686 None:intergenic 40.0%
! GTAGCCTTGAACGTTAAGAA+AGG - chr5.2:72414626-72414645 MS.gene98540:intron 40.0%
! GTTAGGAGTGAGTTGAAGAA+CGG + chr5.2:72410091-72410110 None:intergenic 40.0%
! TAAGGCTCTGACTCCTATAT+GGG - chr5.2:72411576-72411595 MS.gene98540:CDS 40.0%
! TAATCAACTGGTGGTTTTCC+AGG + chr5.2:72412636-72412655 None:intergenic 40.0%
! TAGTTCTACCGAAGAAGAAG+CGG + chr5.2:72413113-72413132 None:intergenic 40.0%
! TGGTTCTGTCTTTACAATGG+TGG + chr5.2:72414848-72414867 None:intergenic 40.0%
! TTAGGAGTGAGTTGAAGAAC+GGG + chr5.2:72410090-72410109 None:intergenic 40.0%
!! ACTATAAAGGTGTTTGCACC+TGG - chr5.2:72412615-72412634 MS.gene98540:intron 40.0%
!! AGTTCAAAAGCACTCTTGAG+AGG + chr5.2:72414662-72414681 None:intergenic 40.0%
!! CACCGACACATTTGTTTTCA+TGG - chr5.2:72410603-72410622 MS.gene98540:intron 40.0%
!! CTTTTCGGATTAGACATGTC+CGG - chr5.2:72410544-72410563 MS.gene98540:intron 40.0%
!! GGTTCTGAATTCAAATGGAG+TGG - chr5.2:72411516-72411535 MS.gene98540:intron 40.0%
!! GGTTTGTTGGAATCTCTTCT+TGG - chr5.2:72412704-72412723 MS.gene98540:intron 40.0%
!! TTTTCGGATTAGACATGTCC+GGG - chr5.2:72410545-72410564 MS.gene98540:intron 40.0%
!!! TGATGTTTTAAGGCATGTCC+AGG - chr5.2:72412239-72412258 MS.gene98540:intron 40.0%
AAAAGGAGTCCTTACAGGCA+AGG - chr5.2:72414144-72414163 MS.gene98540:intron 45.0%
AAGGCAGCCACTGTGTTAAA+GGG - chr5.2:72411601-72411620 MS.gene98540:CDS 45.0%
AATTCTTTGCTCCATGGTGC+GGG - chr5.2:72411548-72411567 MS.gene98540:CDS 45.0%
ACCATGGACGATGCAAAACA+TGG - chr5.2:72411861-72411880 MS.gene98540:CDS 45.0%
ACGTTCAAGGCTACTAATGC+TGG + chr5.2:72414620-72414639 None:intergenic 45.0%
AGAAACCACCGCTTCTTCTT+CGG - chr5.2:72413102-72413121 MS.gene98540:intron 45.0%
ATCCAAAATGTCGGGAAGGA+AGG + chr5.2:72414064-72414083 None:intergenic 45.0%
ATCCTTTCTCACGCTCTCTA+CGG - chr5.2:72410054-72410073 MS.gene98540:CDS 45.0%
CAACACCAACTTTCTGCTCA+AGG + chr5.2:72414583-72414602 None:intergenic 45.0%
CATCGTCCATGGTTCATCAA+AGG + chr5.2:72411854-72411873 None:intergenic 45.0%
CGCCTTGGAATCCAAAATGT+CGG + chr5.2:72414073-72414092 None:intergenic 45.0%
CGGACATGTCTAATCCGAAA+AGG + chr5.2:72410546-72410565 None:intergenic 45.0%
CTCTAGTGCGAATGATTCGA+TGG + chr5.2:72413855-72413874 None:intergenic 45.0%
GAACCATGGGATGGAAAAGA+TGG - chr5.2:72414862-72414881 MS.gene98540:CDS 45.0%
GAATTCTTTGCTCCATGGTG+CGG - chr5.2:72411547-72411566 MS.gene98540:CDS 45.0%
GCCTTGGAATCCAAAATGTC+GGG + chr5.2:72414072-72414091 None:intergenic 45.0%
GGGTCTTGAACAGCTATGTA+TGG - chr5.2:72414534-72414553 MS.gene98540:intron 45.0%
GTAAAGACAGAACCATGGGA+TGG - chr5.2:72414853-72414872 MS.gene98540:CDS 45.0%
TACAATACGTCGAGCATGGT+AGG + chr5.2:72412267-72412286 None:intergenic 45.0%
TCGCACTTCAACAGGTTTGT+TGG - chr5.2:72412691-72412710 MS.gene98540:intron 45.0%
TCTGACTCCTATATGGGAGA+AGG - chr5.2:72411582-72411601 MS.gene98540:CDS 45.0%
TGAAGTGCGAATTCGGCAAT+TGG + chr5.2:72412681-72412700 None:intergenic 45.0%
TGGAATCCAAAATGTCGGGA+AGG + chr5.2:72414068-72414087 None:intergenic 45.0%
TTTGTGAAAGAAGCTGGACG+TGG - chr5.2:72414787-72414806 MS.gene98540:intron 45.0%
! ACCATGTTTTGCATCGTCCA+TGG + chr5.2:72411865-72411884 None:intergenic 45.0%
! ATTTTGGATTCCAAGGCGGA+GGG - chr5.2:72414075-72414094 MS.gene98540:intron 45.0%
! CGACATTTTGGATTCCAAGG+CGG - chr5.2:72414071-72414090 MS.gene98540:intron 45.0%
! GAAGCACTATAGCACTGTAG+TGG - chr5.2:72413572-72413591 MS.gene98540:intron 45.0%
! GTAAGGCTCTGACTCCTATA+TGG - chr5.2:72411575-72411594 MS.gene98540:CDS 45.0%
! GTTTAACATCTCTGGCTCCT+TGG + chr5.2:72412659-72412678 None:intergenic 45.0%
! TATAGCTCTGTCACTTCTGG+AGG + chr5.2:72413899-72413918 None:intergenic 45.0%
! TCCCGACATTTTGGATTCCA+AGG - chr5.2:72414068-72414087 MS.gene98540:intron 45.0%
! TCTCCATCTTTTCCATCCCA+TGG + chr5.2:72414868-72414887 None:intergenic 45.0%
! TCTGTCTTTACAATGGTGGG+AGG + chr5.2:72414844-72414863 None:intergenic 45.0%
! TGTTGACTGTGATGCTGACA+AGG - chr5.2:72413396-72413415 MS.gene98540:CDS 45.0%
! TTCCTTCCTTCCCGACATTT+TGG - chr5.2:72414059-72414078 MS.gene98540:intron 45.0%
! TTGGATGCTCTTTTCCACTC+AGG + chr5.2:72413346-72413365 None:intergenic 45.0%
!! AAAGTTGGTGTTGGTGGGTA+TGG - chr5.2:72414590-72414609 MS.gene98540:intron 45.0%
!! AGCAGAAAGTTGGTGTTGGT+GGG - chr5.2:72414585-72414604 MS.gene98540:intron 45.0%
!! CTTGAGCAGAAAGTTGGTGT+TGG - chr5.2:72414581-72414600 MS.gene98540:intron 45.0%
!!! TATGAAGCACCGACCCTTTT+CGG - chr5.2:72410529-72410548 MS.gene98540:intron 45.0%
!!! AAAAAATAATTTAGATTTTT+GGG - chr5.2:72412547-72412566 MS.gene98540:intron 5.0%
ATCATTCGCACTAGAGCAGC+TGG - chr5.2:72413859-72413878 MS.gene98540:intron 50.0%
CATGGACACCTGATACGATG+TGG + chr5.2:72410676-72410695 None:intergenic 50.0%
CCAACTTTCTGCTCAAGGTC+TGG + chr5.2:72414578-72414597 None:intergenic 50.0%
CCAGACCTTGAGCAGAAAGT+TGG - chr5.2:72414575-72414594 MS.gene98540:intron 50.0%
CTAGCACCCTCGTAAGGAAT+TGG + chr5.2:72413821-72413840 None:intergenic 50.0%
GAAGGCAGCCACTGTGTTAA+AGG - chr5.2:72411600-72411619 MS.gene98540:CDS 50.0%
GCAGGAGAACAAACACTCAC+TGG + chr5.2:72413926-72413945 None:intergenic 50.0%
GGAAAACCTGAGCCAGAGAT+TGG + chr5.2:72411663-72411682 None:intergenic 50.0%
GTCAGTGTCCACATCGTATC+AGG - chr5.2:72410665-72410684 MS.gene98540:intron 50.0%
TGCCGAATTCGCACTTCAAC+AGG - chr5.2:72412683-72412702 MS.gene98540:intron 50.0%
TGCTGATGCTCACCAATCTC+TGG - chr5.2:72411648-72411667 MS.gene98540:intron 50.0%
TTCTACCGAAGAAGAAGCGG+TGG + chr5.2:72413110-72413129 None:intergenic 50.0%
! AACCGTAGAGAGCGTGAGAA+AGG + chr5.2:72410059-72410078 None:intergenic 50.0%
! AGTGAGTTGAAGAACGGGTG+AGG + chr5.2:72410085-72410104 None:intergenic 50.0%
! CATTTTGGATTCCAAGGCGG+AGG - chr5.2:72414074-72414093 MS.gene98540:intron 50.0%
! CTGGCTCCTTGGTAATCAAC+TGG + chr5.2:72412648-72412667 None:intergenic 50.0%
! GCTCCTTGGTAATCAACTGG+TGG + chr5.2:72412645-72412664 None:intergenic 50.0%
! TTTTGGATTCCAAGGCGGAG+GGG - chr5.2:72414076-72414095 MS.gene98540:intron 50.0%
!! GAGCAGAAAGTTGGTGTTGG+TGG - chr5.2:72414584-72414603 MS.gene98540:intron 50.0%
!! TGTCGGTGTCAATGTCGTGT+CGG + chr5.2:72410591-72410610 None:intergenic 50.0%
AAGCTGGACGTGGAGGCAAA+GGG - chr5.2:72414797-72414816 MS.gene98540:intron 55.0%
ACACACGCATGTCTGACACC+CGG + chr5.2:72410566-72410585 None:intergenic 55.0%
ACGATGTGGACACTGACACG+TGG + chr5.2:72410662-72410681 None:intergenic 55.0%
AGCTATGTATGGGCAGCTGC+CGG - chr5.2:72414545-72414564 MS.gene98540:intron 55.0%
CTCAAGGTCTGGCTGCTTAC+CGG + chr5.2:72414567-72414586 None:intergenic 55.0%
GGAGGACCCTTGACCCTATT+TGG + chr5.2:72412145-72412164 None:intergenic 55.0%
GTGAAAGAAGCTGGACGTGG+AGG - chr5.2:72414790-72414809 MS.gene98540:intron 55.0%
GTGGCTGCCTTCTCCCATAT+AGG + chr5.2:72411592-72411611 None:intergenic 55.0%
! GCAGTTCTAGCACCCTCGTA+AGG + chr5.2:72413827-72413846 None:intergenic 55.0%
! TGCTCACCAATCTCTGGCTC+AGG - chr5.2:72411654-72411673 MS.gene98540:intron 55.0%
CGTCGAGCATGGTAGGATCC+TGG + chr5.2:72412260-72412279 None:intergenic 60.0%
GAAGCTGGACGTGGAGGCAA+AGG - chr5.2:72414796-72414815 MS.gene98540:intron 60.0%
GGCAAAGGGAACTTGCCCCT+AGG - chr5.2:72414811-72414830 MS.gene98540:intron 60.0%
! TCCATGGTGCGGGCACTGTA+AGG - chr5.2:72411558-72411577 MS.gene98540:CDS 60.0%
! TCTGTTTCTCCCCTCCGCCT+TGG + chr5.2:72414088-72414107 None:intergenic 60.0%
!! GGTGGGAGGAGTGTCACCTA+GGG + chr5.2:72414830-72414849 None:intergenic 60.0%
!! GTGGGAGGAGTGTCACCTAG+GGG + chr5.2:72414829-72414848 None:intergenic 60.0%
!! TGGTGGGAGGAGTGTCACCT+AGG + chr5.2:72414831-72414850 None:intergenic 60.0%
GCCTTACAGTGCCCGCACCA+TGG + chr5.2:72411562-72411581 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 72410003 72414960 72410003 ID=MS.gene98540
chr5.2 mRNA 72410003 72414960 72410003 ID=MS.gene98540.t1;Parent=MS.gene98540
chr5.2 exon 72414838 72414960 72414838 ID=MS.gene98540.t1.exon1;Parent=MS.gene98540.t1
chr5.2 CDS 72414838 72414960 72414838 ID=cds.MS.gene98540.t1;Parent=MS.gene98540.t1
chr5.2 exon 72413288 72413446 72413288 ID=MS.gene98540.t1.exon2;Parent=MS.gene98540.t1
chr5.2 CDS 72413288 72413446 72413288 ID=cds.MS.gene98540.t1;Parent=MS.gene98540.t1
chr5.2 exon 72412259 72412372 72412259 ID=MS.gene98540.t1.exon3;Parent=MS.gene98540.t1
chr5.2 CDS 72412259 72412372 72412259 ID=cds.MS.gene98540.t1;Parent=MS.gene98540.t1
chr5.2 exon 72411760 72411923 72411760 ID=MS.gene98540.t1.exon4;Parent=MS.gene98540.t1
chr5.2 CDS 72411760 72411923 72411760 ID=cds.MS.gene98540.t1;Parent=MS.gene98540.t1
chr5.2 exon 72411546 72411645 72411546 ID=MS.gene98540.t1.exon5;Parent=MS.gene98540.t1
chr5.2 CDS 72411546 72411645 72411546 ID=cds.MS.gene98540.t1;Parent=MS.gene98540.t1
chr5.2 exon 72411038 72411214 72411038 ID=MS.gene98540.t1.exon6;Parent=MS.gene98540.t1
chr5.2 CDS 72411038 72411214 72411038 ID=cds.MS.gene98540.t1;Parent=MS.gene98540.t1
chr5.2 exon 72410803 72410948 72410803 ID=MS.gene98540.t1.exon7;Parent=MS.gene98540.t1
chr5.2 CDS 72410803 72410948 72410803 ID=cds.MS.gene98540.t1;Parent=MS.gene98540.t1
chr5.2 exon 72410270 72410416 72410270 ID=MS.gene98540.t1.exon8;Parent=MS.gene98540.t1
chr5.2 CDS 72410270 72410416 72410270 ID=cds.MS.gene98540.t1;Parent=MS.gene98540.t1
chr5.2 exon 72410003 72410180 72410003 ID=MS.gene98540.t1.exon9;Parent=MS.gene98540.t1
chr5.2 CDS 72410003 72410180 72410003 ID=cds.MS.gene98540.t1;Parent=MS.gene98540.t1
Gene Sequence

>MS.gene98540

ATGGCGAAACTCTCATTCATTGCTGTAACTATCTTTCTCTTCAACAATCTCATCCTTTCTCACGCTCTCTACGGTTCTTCCTCACCCGTTCTTCAACTCACTCCTAACAACTTCAAGTCCAAGGTTTAATCTTTTTTCAATTTTTCATTGACCCAGTTCGTGATCCCACTTTTTTAGCTTGTTTTTTCAAATTGGTATTGCGTAGAATTGTTAAATTTTGTATCTTTTTGCTTGAAAACTATCTGGGTGTTTTGTGTTTGGAATTTTGCTATGTTGCTGTATTGTCATGTTTCTGTTTTTGTTGGTTGTAGTGTAGTGTGTGAATATGGTTGATTTTATGATTCTGGGTTTTGTGAAGATACAATTTTGATTTGTGTGATATATATAATGTAACGAATCTGTTGATTCATACTATTGTGTAAGTATGTGTTAATGTTGTGTTTTATCATCTGAAAAAAAAAATTAATAGGTTTTAATTCATATAAACTCTTATAAAGATCTTTTAATTCATGTGTTAATATTAAGCTATGAAGCACCGACCCTTTTCGGATTAGACATGTCCGGGTGTCAGACATGCGTGTGTGTCCGACACGACATTGACACCGACACATTTGTTTTCATGGAATTATGTCATTTTCTAAAACTATAATCGAGTTCCACGTGTCAGTGTCCACATCGTATCAGGTGTCCATGCTTCATAGATGTTGTGTATGTTTCGTTTTGTGCTGAGAAAAATTGATTTTGAAACAATTGATTATGTGAAATTGATTAGCAATAAAATTTAGTTGAAGGTAAAGTGATTTTATGTTATGATAGTTTCATGTAAAAGTGAGTTGAACAATAAATTTGAGTGTAAAAAACACTTCTAGAATTAGAAGCTACAATTTCCAGCTTCAGGTAGAATCTATTTTGGAGGCAAAATCAATTCGACTCTAGGTGAACCAAACATTTAAAATTTAGTTCTACACCTCTAGAGTCAATTTTTGCTCCTCTAAAGTGAAACCAAACATACACATAAACTTTTGGTAATTAACAACGTTTCGATTAAATCATAACTACTTCTAATGTCACACATATGATTGCATGTGATTCATTGCTGTAAATATTTTTATACTAACTAAACTCAAATAAAGGTCTGTTTGGATTGTCTTATTTAAACTTATCTATTTACATAAACACTTATAAGACTGTTTGAGAGAACTTACGAAAATTGCTTATGACATGTCCATAAGCTGTTTTCCCCTAATTTTCATAAGCTCTTGAAGATAGCTTATGAAAACATTTTGATTTTATTTTATCTTTTGTTATAAAGATAAATTATACATATGCACTTAATTAAGTTGTTTATCCAAACAGTCTTTTAATATTATTGTATTATGATTGGATTTTGTTATGTTGAAATACGAGCCCCTCCCAAAGAAAATATGAATAATTTTTATGAGTTAGCTTTTTCTTTGCTTTATATAGTTTGTAATGCATCAGGTTTTTATGGGTGCTGTTTTGAATAATGACAGGTTCTGAATTCAAATGGAGTGGTTCTTGTTGAATTCTTTGCTCCATGGTGCGGGCACTGTAAGGCTCTGACTCCTATATGGGAGAAGGCAGCCACTGTGTTAAAGGGTGTAGTTACTGTAGCAGCACTTGATGCTGATGCTCACCAATCTCTGGCTCAGGTTTTCCATTGTTAATTTCTTCATTCCTCAGATTCAGTATTTAAATTTAAATGACATATATTAAAGTAAGACTATGCTGCATGTGTTGTTTTCATCTTACATTTAACCTTTATGAATATGAATATGTGTTATTTTATGCTTCACTTTTCTGTACAATGTACACTAGAAATACATACCTTTGATGAACCATGGACGATGCAAAACATGGTATTGAACCTGTTTAGATTGGTTTATTCGAGTTAACTAGTGACATAAGTACCTGTTAGACAGTTAGGGAAAGTTTATGAAAACTGTGTATGACATGTTCATAAGCTTTTTTCAGCTTATTTCCATAAGCTCTCTAGGATAACTTATGAAAACAGCTTATAGCTTATTTGGAAAACAGGTCGAATTTGTTTTATCATTTGTTATAGAAATAGTTTATGCATAAACACCTATATGATAAGTGCTTAATTAAGTTGTTTATCCAAATAGGGTCAAGGGTCCTCCTGTAACTATTTTAAATATGTGGCATATGATTAATTCGACGTCATCATTTTGATCATTTTAGATATAAAGTTGTTTGATGTTTTAAGGCATGTCCAGGATCCTACCATGCTCGACGTATTGTATATCATTATATGTAAAGTTTTTCCTTCCTTACATTCCTAGTCTTCCCTTTCTATGTAAAGCAACCATAGAATATATTACATTAACGAATAAGAATATGTTTGTTGAGATTATTTATTTTCCTGTCTCTTACATGACATTTGTTATTGTTTGCATGACGGAATATTTATTCATCTAATCCCTGTAACTTTCTCCTGTTATGATTTACATGTTCGGCTATTTTCTTCATTTATTTTATTATAACTGTAAATTGCAAAATTTGAAAAAATAATTTAGATTTTTGGGTCTTTTCTTAATTCCTTTCAGGAATATGGTATTAGAGGATTTCCAACTATAAAGGTGTTTGCACCTGGAAAACCACCAGTTGATTACCAAGGAGCCAGAGATGTTAAACCAATTGCCGAATTCGCACTTCAACAGGTTTGTTGGAATCTCTTCTTGGTTGTTTTAACATTTTACCCCCTAAAGTTTCAATCAAATATTTCGAACATGTGTAGTGTTACAATTTGGATTTTGGATAGAGTAGATAGATGTCTTCTTTTTGTGGAAAACAATTTCTTGTACTTCTATGAAAAATTACTACAAATAAAGGAGAATTTGATCAATAACTTGAAAGGGAAACTCTTCTTGCAACATCACTTGGTAGTGTACAAAATTTCAGCAGAGTGAGAATATCAATGTATTGGGATTAGGGTTGACTGTTCAGTGACTACTGCTTGTAATATTGTGTGATTATAGTTTATTTGCATGTACAGGTAAAGGCTCTTTTGAAGGAACGGTTAAATGGAAAAGCAACAGGTGGATCAAATGAAAAAAAAGAAACCACCGCTTCTTCTTCGGTAGAACTAAACTCTAGTAACTTCGATGAATTGGTTATCAAAAGCAAAGAACTTTGGATTGTAGAATTTTTCGCACCTTGGTGAGTACTTCCTATATTTCAATTATTTATTACCTGACTGAACATGTAATTCTACTTTCAGATTTGCAGTTTCTAAATCTAATAACAACTTTTGTCTTTTTTTATTTCTCAAAGGTGTGGCCATTGTAAAAAATTAGCTCCTGAGTGGAAAAGAGCATCCAATAATTTGAAAGGGAAGGTTAAACTGGGTCATGTTGACTGTGATGCTGACAAGGTAAGCTTATGGAGTATATCTAATCTCATAGTAGTTGATAAAAATTAGAATCAGTTTCGTCAAATAGCGGCTATAGCGTAGCAGAATTTTAACAAACTGTTATTGTTCGGTGATATCCAATTTAGTAGGAAGTGTTGTCAAATAGCCAGCTATAGAAGCACTATAGCACTGTAGTGGAACTTTAACAAACCGCTATTTTTTGCTATCTGCATGATGATCAAGATGATCTCAACATTACTTTTCAATTTATTTATATTATTAGTGTTCAATATTAAGCTTTTTATTCTGCCTTTGAGTTTATATTGTTCTGACAGGATAATTTTTTTGTCAGTCTCTAATGAGCAGGTTCAATGTTCAAGGATTCCCAACAATCTTGGTATTTGGAGCCGATAAAGATACTCCAATTCCTTACGAGGGTGCTAGAACTGCATCAGCCATCGAATCATTCGCACTAGAGCAGCTGGAAACAAATGTTGCTCCTCCAGAAGTGACAGAGCTATATAGTCCAGTGAGTGTTTGTTCTCCTGCAAACTTTACTTCATTGTACACTGATTTGAAAGAAAGAATATAAGATATAAACATGAGTGTTGTCTATAGGATGTTTTGGAAGAGAAATGTGGTTCTGCTGCTATCTGTTTTGTTTCCTTCCTTCCCGACATTTTGGATTCCAAGGCGGAGGGGAGAAACAGATACCTTCAGCAGTTATTAACAGTTGCAGAGAAGTTCAAAAGGAGTCCTTACAGGCAAGGAAAAAAACATTTTGCTTACATTTCATAGTTCATACTTTCACATCCCTCTATGACTCATGAGTTAATCTTTCAAATTCAACTTTTTCGGTTTATACTATTGATTTTGTAAATGCTTTACAGACATGTTTAAATCAAGATAAAAGGCAACATGCATTGTCAGTGTAAACTAGTTTTACACTGACGTTCAATGTGAATCGTGCATGTTGCAGTTATTTTTAAATTGCTGTTGCAAAGTGTACTTACATGGAAATATAATGGGTTCTCATTGGATATCAGTGTAAAACTATTTTGCACCAACAATGCATCTTCATCAAACTCTTAAATCAGTCTTCGTTGACGAATGCTTAATGGTTTTTTGTTTGAATTTGGGTCTTGAACAGCTATGTATGGGCAGCTGCCGGTAAGCAGCCAGACCTTGAGCAGAAAGTTGGTGTTGGTGGGTATGGTTATCCAGCATTAGTAGCCTTGAACGTTAAGAAAGGTGTTTATGCTCCTCTCAAGAGTGCTTTTGAACTTGACCAAATTATGTAAGTCTATTTTTCTAATTTTATGCTAAATAGTTGGCGCTTTACTGAAGCAAACAAGTACTTGAACTTTATTGATTTGTTTTCTTCAGAGAATTTGTGAAAGAAGCTGGACGTGGAGGCAAAGGGAACTTGCCCCTAGGTGACACTCCTCCCACCATTGTAAAGACAGAACCATGGGATGGAAAAGATGGAGAAATAATTGAGGAAGATGAATTTTCTCTTGAAGAACTCATGGGAGATGATGCCTCAACCAAAGATGAACTATAA

Protein sequence

>MS.gene98540.t1

MAKLSFIAVTIFLFNNLILSHALYGSSSPVLQLTPNNFKSKVLNSNGVVLVEFFAPWCGHCKALTPIWEKAATVLKGVVTVAALDADAHQSLAQEYGIRGFPTIKVFAPGKPPVDYQGARDVKPIAEFALQQVKALLKERLNGKATGGSNEKKETTASSSVELNSSNFDELVIKSKELWIVEFFAPWCGHCKKLAPEWKRASNNLKGKVKLGHVDCDADKSLMSRFNVQGFPTILVFGADKDTPIPYEGARTASAIESFALEQLETNVAPPEVTELYSPDVLEEKCGSAAICFVSFLPDILDSKAEGRNRYLQQLLTVAEKFKRSPYSYVWAAAGKQPDLEQKVGVGGYGYPALVALNVKKGVYAPLKSAFELDQIIEFVKEAGRGGKGNLPLGDTPPTIVKTEPWDGKDGEIIEEDEFSLEELMGDDASTKDEL