AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75906

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75906.t1 MTR_2g047912 86.569 685 84 4 1 684 1 678 0.0 1169
MS.gene75906.t1 MTR_1g049120 62.418 455 112 10 272 680 474 915 1.60e-159 484
MS.gene75906.t1 MTR_1g049120 41.603 262 105 8 146 395 120 345 6.52e-37 149
MS.gene75906.t1 MTR_4g036445 47.507 381 138 11 9 379 23 351 4.19e-82 272
MS.gene75906.t1 MTR_4g036445 76.667 120 26 1 272 389 498 617 1.92e-51 189
MS.gene75906.t1 MTR_1g072780 42.790 423 196 14 286 678 562 968 7.78e-74 257
MS.gene75906.t1 MTR_2g013200 55.280 161 35 7 28 188 22 145 6.14e-37 135
MS.gene75906.t1 MTR_1g066890 39.216 153 84 3 523 675 759 902 2.25e-20 96.7
MS.gene75906.t1 MTR_2g104120 31.224 237 139 8 451 675 602 826 7.47e-20 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75906.t1 AT3G54760 37.716 289 154 5 385 672 471 734 3.95e-41 160
MS.gene75906.t1 AT3G54760 37.716 289 154 5 385 672 502 765 4.59e-41 160
MS.gene75906.t1 AT5G02950 47.561 82 43 0 592 673 542 623 4.99e-16 82.4
MS.gene75906.t1 AT5G02950 47.561 82 43 0 592 673 542 623 4.99e-16 82.4

Find 136 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAGGAAATGTCAAATTT+TGG 0.102293 2.1:-43471757 MS.gene75906:CDS
CTTTGATTATTTAAATTTCT+AGG 0.188454 2.1:+43471025 None:intergenic
GCTAAGAGGTTCAAAATATT+TGG 0.188718 2.1:-43469987 MS.gene75906:CDS
AACAAAATGTTTAGGCGTTT+TGG 0.208672 2.1:-43470107 MS.gene75906:CDS
CATCCAGCAAAGAAGGAAAA+AGG 0.274469 2.1:-43470959 MS.gene75906:CDS
TTCTGTTTGTGCAGGATTGC+TGG 0.285908 2.1:-43471302 MS.gene75906:intron
AACCAAACTGCCGAGGTTAA+AGG 0.302938 2.1:-43471445 MS.gene75906:intron
CAATTAACTTGGGCTGGCTT+TGG 0.312666 2.1:+43470275 None:intergenic
ATTCAATACTATACACGAAT+TGG 0.317023 2.1:-43471819 MS.gene75906:CDS
TTAATTGTGGGCCCTATTCC+TGG 0.320932 2.1:-43470259 MS.gene75906:CDS
GAGGATTTGAGTGGAGAAGC+TGG 0.330533 2.1:-43472003 MS.gene75906:CDS
TGCACTATGGAGGATGCTGC+TGG 0.334939 2.1:-43471895 MS.gene75906:CDS
GATGACTTCAAAATTCAAAC+TGG 0.354447 2.1:-43470821 MS.gene75906:CDS
ATATAACCAGGAGGTTTGTT+AGG 0.362436 2.1:+43470203 None:intergenic
TGCTGGGGCCGCAGGTCACC+CGG 0.366796 2.1:-43471878 MS.gene75906:CDS
TTCGGCAATGGTTGTTGCAC+TGG 0.373071 2.1:+43470338 None:intergenic
GGATAGAGTGGTTTCGGAAA+GGG 0.380946 2.1:-43471953 MS.gene75906:CDS
TTCCTCAATATCAACAATAC+TGG 0.388085 2.1:+43471771 None:intergenic
CTCCAGTATTGTTGATATTG+AGG 0.397240 2.1:-43471773 MS.gene75906:CDS
TTAACTTGGGCTGGCTTTGG+TGG 0.399327 2.1:+43470278 None:intergenic
GGGTAGTTTCTTCTTCCTCA+TGG 0.403985 2.1:+43470448 None:intergenic
CTCAAAGCTTTGAACACGCT+TGG 0.409796 2.1:+43469930 None:intergenic
TAAGTTGGATAGAGTGGTTT+CGG 0.414914 2.1:-43471959 MS.gene75906:CDS
TACCTTTAACCTCGGCAGTT+TGG 0.419407 2.1:+43471443 None:intergenic
TTGTTGGACTCCAGTTCATC+TGG 0.422462 2.1:-43470891 MS.gene75906:CDS
TCAACTTTATCGTTCACAAT+TGG 0.425111 2.1:+43471661 None:intergenic
CAAACCTTAACAAAATGTTT+AGG 0.433748 2.1:-43470115 MS.gene75906:CDS
ACAAATTCATCGTTTACAAC+TGG 0.435206 2.1:-43470761 MS.gene75906:CDS
AAACTACCCATAGCTGGAAC+TGG 0.437164 2.1:-43470434 MS.gene75906:CDS
GGCCCACAATTAACTTGGGC+TGG 0.445403 2.1:+43470269 None:intergenic
GCTGGGGCCGCAGGTCACCC+GGG 0.446440 2.1:-43471877 MS.gene75906:CDS
AGTTGTAAACGATGAATTTG+TGG 0.447057 2.1:+43470763 None:intergenic
GAATCCAGAGAACCATTCAT+TGG 0.447830 2.1:+43470926 None:intergenic
ATTCTCCAGACGGTGATTGT+TGG 0.448044 2.1:-43470907 MS.gene75906:CDS
TCAGGTGCAACCAGATGAAC+TGG 0.448957 2.1:+43470881 None:intergenic
GAGGATGCTGCTGGGGCCGC+AGG 0.453197 2.1:-43471886 MS.gene75906:CDS
ATTGTGAACGATAAAGTTGA+TGG 0.456872 2.1:-43471658 MS.gene75906:CDS
TGACGAGGAACAAGATTTGT+TGG 0.456916 2.1:-43471098 MS.gene75906:CDS
TACTATGCATCCAGCAAAGA+AGG 0.457588 2.1:-43470966 MS.gene75906:CDS
GCAACAGCATGTGGCTCCCT+TGG 0.457839 2.1:+43471212 None:intergenic
AGGATTTGAGTGGAGAAGCT+GGG 0.462030 2.1:-43472002 MS.gene75906:CDS
CGCAGTTAAGTTGGATAGAG+TGG 0.462681 2.1:-43471965 MS.gene75906:CDS
AAAGCGTAAATATAATTTCA+AGG 0.466648 2.1:-43470990 MS.gene75906:CDS
TGATCGACTGTATTAACAAC+AGG 0.467265 2.1:+43471055 None:intergenic
GCACTATGGAGGATGCTGCT+GGG 0.467873 2.1:-43471894 MS.gene75906:CDS
AGACCCAATGAATGGTTCTC+TGG 0.468093 2.1:-43470930 MS.gene75906:CDS
AATAGGGCCCACAATTAACT+TGG 0.469238 2.1:+43470264 None:intergenic
TGGCACTGACTCTTGCACTA+TGG 0.471756 2.1:-43471908 MS.gene75906:CDS
GAAACATCCAATCTATTCTC+AGG 0.477155 2.1:+43470674 None:intergenic
TTTGTTAAGGTTTGTTTCTG+AGG 0.484036 2.1:+43470124 None:intergenic
CACCTGAACATTCCAAGAAA+AGG 0.485699 2.1:-43470865 MS.gene75906:CDS
GAATGCCGCCGCAGTTAAGT+TGG 0.497236 2.1:-43471974 MS.gene75906:CDS
TGGATAGAGTGGTTTCGGAA+AGG 0.503876 2.1:-43471954 MS.gene75906:CDS
ATTTCACGTACGGATGAACT+TGG 0.508981 2.1:-43470473 MS.gene75906:CDS
AACAAATCCAGTTCCAGCTA+TGG 0.509497 2.1:+43470427 None:intergenic
GAGAAAAGTATGTTCTCCAT+GGG 0.509518 2.1:+43470562 None:intergenic
AAGAAGAAACTACCCATAGC+TGG 0.514324 2.1:-43470440 MS.gene75906:CDS
AGCCAGCCCAAGTTAATTGT+GGG 0.520785 2.1:-43470271 MS.gene75906:CDS
TTGTTAAGGTTTGTTTCTGA+GGG 0.523108 2.1:+43470125 None:intergenic
CGCTTGGAGTGTAATTAAGC+TGG 0.523239 2.1:+43469946 None:intergenic
AAGTTCATAACAAGCTCAGC+AGG 0.528013 2.1:+43470167 None:intergenic
GGAGTCAAATATGAGGCAAA+AGG 0.528193 2.1:-43471164 MS.gene75906:CDS
AATCCAGAGAACCATTCATT+GGG 0.530099 2.1:+43470927 None:intergenic
CACTATGGAGGATGCTGCTG+GGG 0.531939 2.1:-43471893 MS.gene75906:CDS
GCGAGGTATCAATCAATAGT+TGG 0.532321 2.1:-43471928 MS.gene75906:CDS
AGATATCTTACCTTTAACCT+CGG 0.536941 2.1:+43471435 None:intergenic
AAGCCAGCCCAAGTTAATTG+TGG 0.539378 2.1:-43470272 MS.gene75906:CDS
CTGTAATTGTGAGTGCCGAT+TGG 0.540957 2.1:-43470502 MS.gene75906:CDS
TGAGAAAAGTATGTTCTCCA+TGG 0.541750 2.1:+43470561 None:intergenic
AGTAAGCAGCCGTGCAAGAG+TGG 0.544946 2.1:-43470051 MS.gene75906:CDS
ACGTGAAATCTCTTTCCAAT+CGG 0.545841 2.1:+43470487 None:intergenic
TAATTGTGGGCCCTATTCCT+GGG 0.547307 2.1:-43470258 MS.gene75906:CDS
GCTAATGCAATTGCAGAAGA+AGG 0.548428 2.1:-43471250 MS.gene75906:CDS
TCTTAAAGACCACTCTTGCA+CGG 0.549177 2.1:+43470042 None:intergenic
GGAGTCCAACAATCACCGTC+TGG 0.550831 2.1:+43470902 None:intergenic
GCAGATGCAGAGGTAGCGCT+TGG 0.551943 2.1:-43470014 MS.gene75906:CDS
CAGATAGTTGAGGATTTGAG+TGG 0.552151 2.1:-43472012 MS.gene75906:CDS
ACAAATCCAGTTCCAGCTAT+GGG 0.556927 2.1:+43470428 None:intergenic
TAGACGAGTCTGTGGAATGT+GGG 0.561456 2.1:-43472038 MS.gene75906:CDS
CAACTGGTGACTGTATTCGT+AGG 0.563107 2.1:-43470745 MS.gene75906:CDS
GGGATGTCAGACCCAATGAA+TGG 0.563115 2.1:-43470938 MS.gene75906:CDS
TCAGCAAACAGTGATGTCCC+CGG 0.563331 2.1:+43471859 None:intergenic
TTGGAAAGAGATTTCACGTA+CGG 0.566404 2.1:-43470483 MS.gene75906:CDS
TAGCGCTTGGTAGTGCTAAG+AGG 0.567148 2.1:-43470001 MS.gene75906:CDS
AGACGAGTCTGTGGAATGTG+GGG 0.568309 2.1:-43472037 MS.gene75906:CDS
TCAACGAGGAGTCAAATATG+AGG 0.576367 2.1:-43471171 MS.gene75906:CDS
AGGTATATATCCACAGTTGT+TGG 0.577757 2.1:-43472069 MS.gene75906:CDS
TAAGAAGCGTGCAGATGCAG+AGG 0.578058 2.1:-43470024 MS.gene75906:CDS
CTGGGGCCGCAGGTCACCCG+GGG 0.578280 2.1:-43471876 MS.gene75906:CDS
CATGCTGTTGCGTGATGGAA+AGG 0.580037 2.1:-43471200 MS.gene75906:CDS
TGATGTCCCCGGGTGACCTG+CGG 0.582580 2.1:+43471870 None:intergenic
CCATGGAAGAAGTAGAAAAG+AGG 0.582789 2.1:-43472089 MS.gene75906:CDS
GTTAATACAGTCGATCAAGC+TGG 0.583440 2.1:-43471049 MS.gene75906:CDS
ACATTCCACAGACTCGTCTA+CGG 0.585735 2.1:+43472041 None:intergenic
GGCACTCAAATCACTGACCA+AGG 0.586192 2.1:-43471229 MS.gene75906:CDS
CAGCAAACAGTGATGTCCCC+GGG 0.587981 2.1:+43471860 None:intergenic
AACTGGTGACTGTATTCGTA+GGG 0.601493 2.1:-43470744 MS.gene75906:CDS
AGCCACATGCTGTTGCGTGA+TGG 0.602204 2.1:-43471205 MS.gene75906:CDS
TTCCATCACGCAACAGCATG+TGG 0.602267 2.1:+43471203 None:intergenic
CAGAAGACAGATGTAGACAT+TGG 0.604824 2.1:-43470704 MS.gene75906:CDS
TATCAACAATACTGGAGTTG+CGG 0.605835 2.1:+43471779 None:intergenic
CACTGACTCTTGCACTATGG+AGG 0.606778 2.1:-43471905 MS.gene75906:CDS
CTATACACGAATTGGAATGA+CGG 0.608885 2.1:-43471811 MS.gene75906:CDS
GAGACTCCTAACAAACCTCC+TGG 0.609889 2.1:-43470209 MS.gene75906:CDS
GTGACTTGCATTGTACAGAC+TGG 0.613441 2.1:-43470388 MS.gene75906:CDS
GGAGCAAGTAATAGCTGACA+AGG 0.615459 2.1:-43471575 MS.gene75906:CDS
GTCATCATCAAAGTGATCGA+AGG 0.615503 2.1:+43470838 None:intergenic
ATAGGGCCCACAATTAACTT+GGG 0.615525 2.1:+43470265 None:intergenic
GCATTCTCATCTATATAACC+AGG 0.616725 2.1:+43470191 None:intergenic
AGAGCAAGAATGCGTTGACA+AGG 0.619110 2.1:-43471137 MS.gene75906:CDS
GGTTCTCTGGATTCTCCAGA+CGG 0.624667 2.1:-43470917 MS.gene75906:CDS
GCTATCTTCACTTCAGTGTG+TGG 0.627339 2.1:-43470594 MS.gene75906:CDS
GAACAATCTGATGTACGCGA+GGG 0.634786 2.1:-43471523 MS.gene75906:CDS
TACGGTTTCACCAACAACTG+TGG 0.637008 2.1:+43472059 None:intergenic
GTAGACGAGTCTGTGGAATG+TGG 0.638760 2.1:-43472039 MS.gene75906:CDS
AGTTGAAAAGTGTAATGCAA+TGG 0.639577 2.1:-43471596 MS.gene75906:CDS
AACAATGAACCAAACTGCCG+AGG 0.646442 2.1:-43471452 MS.gene75906:CDS
TGAACAATCTGATGTACGCG+AGG 0.646674 2.1:-43471524 MS.gene75906:CDS
ATGACTTCAAAATTCAAACT+GGG 0.650140 2.1:-43470820 MS.gene75906:CDS
TGAGGGAACAGATTTGAACT+CGG 0.650512 2.1:+43470142 None:intergenic
AACAATCTGATGTACGCGAG+GGG 0.651223 2.1:-43471522 MS.gene75906:CDS
TGAAACCGTAGACGAGTCTG+TGG 0.661034 2.1:-43472046 MS.gene75906:CDS
GACGAGTCTGTGGAATGTGG+GGG 0.663276 2.1:-43472036 MS.gene75906:CDS
TCTATCCAACTTAACTGCGG+CGG 0.665386 2.1:+43471969 None:intergenic
CACTCTATCCAACTTAACTG+CGG 0.673432 2.1:+43471966 None:intergenic
ACAGACTGGGTCATTGACAA+TGG 0.673767 2.1:-43470374 MS.gene75906:CDS
AGAAAAGTATGTTCTCCATG+GGG 0.678685 2.1:+43470563 None:intergenic
ATTGTACATGAAGTTGTCTG+TGG 0.678962 2.1:-43471625 MS.gene75906:CDS
TTCTCATCTATATAACCAGG+AGG 0.679754 2.1:+43470194 None:intergenic
CGGATGAACTTGGCACCATG+AGG 0.680302 2.1:-43470463 MS.gene75906:CDS
GCACTCAAATCACTGACCAA+GGG 0.687112 2.1:-43471228 MS.gene75906:CDS
TGGTTTCGGAAAGGGAAGCG+AGG 0.690904 2.1:-43471945 MS.gene75906:CDS
TGACTTGCATTGTACAGACT+GGG 0.698935 2.1:-43470387 MS.gene75906:CDS
ATAGCTGACAAGGATGTGAG+TGG 0.749474 2.1:-43471565 MS.gene75906:CDS
ATAGATGTTGAAGATCAACA+AGG 0.760784 2.1:-43471490 MS.gene75906:CDS
GCTGGTATCTATTGACCACG+AGG 0.766728 2.1:-43471284 MS.gene75906:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTGATTATTTAAATTTCT+AGG + chr2.1:43470982-43471001 None:intergenic 15.0%
!!! TAATATTTTTGTTGATATCA+TGG - chr2.1:43470294-43470313 MS.gene75906:CDS 15.0%
!! AAAGCGTAAATATAATTTCA+AGG - chr2.1:43471014-43471033 MS.gene75906:CDS 20.0%
!! ATCAACAAAAATATTAGAGT+TGG + chr2.1:43470290-43470309 None:intergenic 20.0%
! ATGACTTCAAAATTCAAACT+GGG - chr2.1:43471184-43471203 MS.gene75906:CDS 25.0%
! ATTCAATACTATACACGAAT+TGG - chr2.1:43470185-43470204 MS.gene75906:CDS 25.0%
! CAAACCTTAACAAAATGTTT+AGG - chr2.1:43471889-43471908 MS.gene75906:CDS 25.0%
!! ATTGAGGAAATGTCAAATTT+TGG - chr2.1:43470247-43470266 MS.gene75906:CDS 25.0%
!! TTGAGGAAATGTCAAATTTT+GGG - chr2.1:43470248-43470267 MS.gene75906:CDS 25.0%
ACAAATTCATCGTTTACAAC+TGG - chr2.1:43471243-43471262 MS.gene75906:CDS 30.0%
AGATATCTTACCTTTAACCT+CGG + chr2.1:43470572-43470591 None:intergenic 30.0%
AGTTGTAAACGATGAATTTG+TGG + chr2.1:43471244-43471263 None:intergenic 30.0%
ATAGATGTTGAAGATCAACA+AGG - chr2.1:43470514-43470533 MS.gene75906:CDS 30.0%
ATTGTGAACGATAAAGTTGA+TGG - chr2.1:43470346-43470365 MS.gene75906:CDS 30.0%
GATGACTTCAAAATTCAAAC+TGG - chr2.1:43471183-43471202 MS.gene75906:CDS 30.0%
GCTAAGAGGTTCAAAATATT+TGG - chr2.1:43472017-43472036 MS.gene75906:CDS 30.0%
TCAACTTTATCGTTCACAAT+TGG + chr2.1:43470346-43470365 None:intergenic 30.0%
TTCCTCAATATCAACAATAC+TGG + chr2.1:43470236-43470255 None:intergenic 30.0%
! AACAAAATGTTTAGGCGTTT+TGG - chr2.1:43471897-43471916 MS.gene75906:CDS 30.0%
! AACGCCTAAACATTTTGTTA+AGG + chr2.1:43471896-43471915 None:intergenic 30.0%
! AGTTGAAAAGTGTAATGCAA+TGG - chr2.1:43470408-43470427 MS.gene75906:CDS 30.0%
! TGTTTTTCCTGAGAATAGAT+TGG - chr2.1:43471323-43471342 MS.gene75906:intron 30.0%
!! TTGTTAAGGTTTGTTTCTGA+GGG + chr2.1:43471882-43471901 None:intergenic 30.0%
!! TTTGTTAAGGTTTGTTTCTG+AGG + chr2.1:43471883-43471902 None:intergenic 30.0%
!!! AGAATTTTTTACCCAGGAAT+AGG + chr2.1:43471760-43471779 None:intergenic 30.0%
!!! CAATTCATTTTTTGTTGACG+AGG - chr2.1:43470891-43470910 MS.gene75906:CDS 30.0%
!!! GAATTTTTTACCCAGGAATA+GGG + chr2.1:43471759-43471778 None:intergenic 30.0%
!!! GCTTTTAGAATTTTTTACCC+AGG + chr2.1:43471766-43471785 None:intergenic 30.0%
AAGATATCTGCTGATCTCAT+TGG - chr2.1:43470583-43470602 MS.gene75906:CDS 35.0%
AATCCAGAGAACCATTCATT+GGG + chr2.1:43471080-43471099 None:intergenic 35.0%
ACGTGAAATCTCTTTCCAAT+CGG + chr2.1:43471520-43471539 None:intergenic 35.0%
AGGTATATATCCACAGTTGT+TGG - chr2.1:43469935-43469954 MS.gene75906:CDS 35.0%
ATCCAGCAAAGAAGGAAAAA+GGG - chr2.1:43471046-43471065 MS.gene75906:CDS 35.0%
ATTGCCGAAAAACCAGAAAA+AGG - chr2.1:43471680-43471699 MS.gene75906:CDS 35.0%
ATTGTACATGAAGTTGTCTG+TGG - chr2.1:43470379-43470398 MS.gene75906:CDS 35.0%
CTATACACGAATTGGAATGA+CGG - chr2.1:43470193-43470212 MS.gene75906:CDS 35.0%
CTCCAGTATTGTTGATATTG+AGG - chr2.1:43470231-43470250 MS.gene75906:CDS 35.0%
GAAACATCCAATCTATTCTC+AGG + chr2.1:43471333-43471352 None:intergenic 35.0%
GCATTCTCATCTATATAACC+AGG + chr2.1:43471816-43471835 None:intergenic 35.0%
TATCAACAATACTGGAGTTG+CGG + chr2.1:43470228-43470247 None:intergenic 35.0%
TGATCGACTGTATTAACAAC+AGG + chr2.1:43470952-43470971 None:intergenic 35.0%
TTCTCATCTATATAACCAGG+AGG + chr2.1:43471813-43471832 None:intergenic 35.0%
TTGGAAAGAGATTTCACGTA+CGG - chr2.1:43471521-43471540 MS.gene75906:CDS 35.0%
! AGAAAAGTATGTTCTCCATG+GGG + chr2.1:43471444-43471463 None:intergenic 35.0%
! ATATAACCAGGAGGTTTGTT+AGG + chr2.1:43471804-43471823 None:intergenic 35.0%
! CATACTTTTCTCAATGGCAT+AGG - chr2.1:43471453-43471472 MS.gene75906:CDS 35.0%
! CTTTCTTTCAGCTTAACTTG+TGG - chr2.1:43470618-43470637 MS.gene75906:CDS 35.0%
! GAGAAAAGTATGTTCTCCAT+GGG + chr2.1:43471445-43471464 None:intergenic 35.0%
! GGAGAACATACTTTTCTCAA+TGG - chr2.1:43471447-43471466 MS.gene75906:CDS 35.0%
! TAAGTTGGATAGAGTGGTTT+CGG - chr2.1:43470045-43470064 MS.gene75906:CDS 35.0%
! TAGCATCAAAATTTTCCTCG+TGG + chr2.1:43470738-43470757 None:intergenic 35.0%
! TCATCATGCTCAACAGTTTT+AGG + chr2.1:43471357-43471376 None:intergenic 35.0%
! TGAGAAAAGTATGTTCTCCA+TGG + chr2.1:43471446-43471465 None:intergenic 35.0%
!!! TCGTCCTTTTTCTGGTTTTT+CGG + chr2.1:43471687-43471706 None:intergenic 35.0%
!!! TTTTTCTGGTTTTTCGGCAA+TGG + chr2.1:43471681-43471700 None:intergenic 35.0%
AACAAATCCAGTTCCAGCTA+TGG + chr2.1:43471580-43471599 None:intergenic 40.0%
AACTGGTGACTGTATTCGTA+GGG - chr2.1:43471260-43471279 MS.gene75906:CDS 40.0%
AAGAAGAAACTACCCATAGC+TGG - chr2.1:43471564-43471583 MS.gene75906:CDS 40.0%
AAGTTCATAACAAGCTCAGC+AGG + chr2.1:43471840-43471859 None:intergenic 40.0%
AATAGGGCCCACAATTAACT+TGG + chr2.1:43471743-43471762 None:intergenic 40.0%
ACAAATCCAGTTCCAGCTAT+GGG + chr2.1:43471579-43471598 None:intergenic 40.0%
ATAGGGCCCACAATTAACTT+GGG + chr2.1:43471742-43471761 None:intergenic 40.0%
ATTTCACGTACGGATGAACT+TGG - chr2.1:43471531-43471550 MS.gene75906:CDS 40.0%
CACCTGAACATTCCAAGAAA+AGG - chr2.1:43471139-43471158 MS.gene75906:CDS 40.0%
CACTCTATCCAACTTAACTG+CGG + chr2.1:43470041-43470060 None:intergenic 40.0%
CAGAAGACAGATGTAGACAT+TGG - chr2.1:43471300-43471319 MS.gene75906:intron 40.0%
CAGATAGTTGAGGATTTGAG+TGG - chr2.1:43469992-43470011 MS.gene75906:CDS 40.0%
CATCCAGCAAAGAAGGAAAA+AGG - chr2.1:43471045-43471064 MS.gene75906:CDS 40.0%
GAATCCAGAGAACCATTCAT+TGG + chr2.1:43471081-43471100 None:intergenic 40.0%
GCTAATGCAATTGCAGAAGA+AGG - chr2.1:43470754-43470773 MS.gene75906:CDS 40.0%
GGAGTCAAATATGAGGCAAA+AGG - chr2.1:43470840-43470859 MS.gene75906:CDS 40.0%
GTCATCATCAAAGTGATCGA+AGG + chr2.1:43471169-43471188 None:intergenic 40.0%
GTTAATACAGTCGATCAAGC+TGG - chr2.1:43470955-43470974 MS.gene75906:CDS 40.0%
TACTATGCATCCAGCAAAGA+AGG - chr2.1:43471038-43471057 MS.gene75906:CDS 40.0%
TCAACGAGGAGTCAAATATG+AGG - chr2.1:43470833-43470852 MS.gene75906:CDS 40.0%
TCTTAAAGACCACTCTTGCA+CGG + chr2.1:43471965-43471984 None:intergenic 40.0%
TGACGAGGAACAAGATTTGT+TGG - chr2.1:43470906-43470925 MS.gene75906:CDS 40.0%
TGAGGGAACAGATTTGAACT+CGG + chr2.1:43471865-43471884 None:intergenic 40.0%
TGGAAAGGAAAAACTCAACG+AGG - chr2.1:43470819-43470838 MS.gene75906:CDS 40.0%
! ATCCCTTTTTCCTTCTTTGC+TGG + chr2.1:43471051-43471070 None:intergenic 40.0%
! CAAGTTGTTCGTCCTTTTTC+TGG + chr2.1:43471695-43471714 None:intergenic 40.0%
! CTCCTTTTCTTGGAATGTTC+AGG + chr2.1:43471144-43471163 None:intergenic 40.0%
! GCGAGGTATCAATCAATAGT+TGG - chr2.1:43470076-43470095 MS.gene75906:CDS 40.0%
! TGACTTGCATTGTACAGACT+GGG - chr2.1:43471617-43471636 MS.gene75906:CDS 40.0%
!!! TAGGCGTTTTGGAGAACTAA+AGG - chr2.1:43471908-43471927 MS.gene75906:CDS 40.0%
AAACTACCCATAGCTGGAAC+TGG - chr2.1:43471570-43471589 MS.gene75906:CDS 45.0%
AACAATCTGATGTACGCGAG+GGG - chr2.1:43470482-43470501 MS.gene75906:CDS 45.0%
AACAATGAACCAAACTGCCG+AGG - chr2.1:43470552-43470571 MS.gene75906:CDS 45.0%
AACCAAACTGCCGAGGTTAA+AGG - chr2.1:43470559-43470578 MS.gene75906:CDS 45.0%
AAGCCAGCCCAAGTTAATTG+TGG - chr2.1:43471732-43471751 MS.gene75906:CDS 45.0%
ACAGACTGGGTCATTGACAA+TGG - chr2.1:43471630-43471649 MS.gene75906:CDS 45.0%
ACATTCCACAGACTCGTCTA+CGG + chr2.1:43469966-43469985 None:intergenic 45.0%
AGACCCAATGAATGGTTCTC+TGG - chr2.1:43471074-43471093 MS.gene75906:CDS 45.0%
AGCCAGCCCAAGTTAATTGT+GGG - chr2.1:43471733-43471752 MS.gene75906:CDS 45.0%
AGGATTTGAGTGGAGAAGCT+GGG - chr2.1:43470002-43470021 MS.gene75906:CDS 45.0%
ATAGCTGACAAGGATGTGAG+TGG - chr2.1:43470439-43470458 MS.gene75906:CDS 45.0%
ATTCTCCAGACGGTGATTGT+TGG - chr2.1:43471097-43471116 MS.gene75906:CDS 45.0%
CAACTGGTGACTGTATTCGT+AGG - chr2.1:43471259-43471278 MS.gene75906:CDS 45.0%
CGCTTGGAGTGTAATTAAGC+TGG + chr2.1:43472061-43472080 None:intergenic 45.0%
GAACAATCTGATGTACGCGA+GGG - chr2.1:43470481-43470500 MS.gene75906:CDS 45.0%
GCACTCAAATCACTGACCAA+GGG - chr2.1:43470776-43470795 MS.gene75906:CDS 45.0%
GCTATCTTCACTTCAGTGTG+TGG - chr2.1:43471410-43471429 MS.gene75906:intron 45.0%
GGAGCAAGTAATAGCTGACA+AGG - chr2.1:43470429-43470448 MS.gene75906:CDS 45.0%
GGATAGAGTGGTTTCGGAAA+GGG - chr2.1:43470051-43470070 MS.gene75906:CDS 45.0%
GGGTAGTTTCTTCTTCCTCA+TGG + chr2.1:43471559-43471578 None:intergenic 45.0%
TAATTGTGGGCCCTATTCCT+GGG - chr2.1:43471746-43471765 MS.gene75906:CDS 45.0%
TACCTTTAACCTCGGCAGTT+TGG + chr2.1:43470564-43470583 None:intergenic 45.0%
TACGGTTTCACCAACAACTG+TGG + chr2.1:43469948-43469967 None:intergenic 45.0%
TAGACGAGTCTGTGGAATGT+GGG - chr2.1:43469966-43469985 MS.gene75906:CDS 45.0%
TCTATCCAACTTAACTGCGG+CGG + chr2.1:43470038-43470057 None:intergenic 45.0%
TGAACAATCTGATGTACGCG+AGG - chr2.1:43470480-43470499 MS.gene75906:CDS 45.0%
TGGATAGAGTGGTTTCGGAA+AGG - chr2.1:43470050-43470069 MS.gene75906:CDS 45.0%
TTAATTGTGGGCCCTATTCC+TGG - chr2.1:43471745-43471764 MS.gene75906:CDS 45.0%
TTCTGTTTGTGCAGGATTGC+TGG - chr2.1:43470702-43470721 MS.gene75906:CDS 45.0%
TTGTTGGACTCCAGTTCATC+TGG - chr2.1:43471113-43471132 MS.gene75906:CDS 45.0%
! AGAGCAAGAATGCGTTGACA+AGG - chr2.1:43470867-43470886 MS.gene75906:CDS 45.0%
! GTGACTTGCATTGTACAGAC+TGG - chr2.1:43471616-43471635 MS.gene75906:CDS 45.0%
!! CAATTAACTTGGGCTGGCTT+TGG + chr2.1:43471732-43471751 None:intergenic 45.0%
!! CGCAGTTAAGTTGGATAGAG+TGG - chr2.1:43470039-43470058 MS.gene75906:CDS 45.0%
!! CTCAAAGCTTTGAACACGCT+TGG + chr2.1:43472077-43472096 None:intergenic 45.0%
!! CTGTAATTGTGAGTGCCGAT+TGG - chr2.1:43471502-43471521 MS.gene75906:CDS 45.0%
AGACGAGTCTGTGGAATGTG+GGG - chr2.1:43469967-43469986 MS.gene75906:CDS 50.0%
ATGTGGGGGTCAGATAGTTG+AGG - chr2.1:43469982-43470001 MS.gene75906:CDS 50.0%
GAGACTCCTAACAAACCTCC+TGG - chr2.1:43471795-43471814 MS.gene75906:CDS 50.0%
GAGGATTTGAGTGGAGAAGC+TGG - chr2.1:43470001-43470020 MS.gene75906:CDS 50.0%
GCTGGTATCTATTGACCACG+AGG - chr2.1:43470720-43470739 MS.gene75906:CDS 50.0%
GCTTGCAGTTCTGTTTGTGC+AGG - chr2.1:43470694-43470713 MS.gene75906:CDS 50.0%
GGCACTCAAATCACTGACCA+AGG - chr2.1:43470775-43470794 MS.gene75906:CDS 50.0%
GGGATGTCAGACCCAATGAA+TGG - chr2.1:43471066-43471085 MS.gene75906:CDS 50.0%
GGTTCTCTGGATTCTCCAGA+CGG - chr2.1:43471087-43471106 MS.gene75906:CDS 50.0%
GTAGACGAGTCTGTGGAATG+TGG - chr2.1:43469965-43469984 MS.gene75906:CDS 50.0%
TCAGCAAACAGTGATGTCCC+CGG + chr2.1:43470148-43470167 None:intergenic 50.0%
TCAGGTGCAACCAGATGAAC+TGG + chr2.1:43471126-43471145 None:intergenic 50.0%
TGAAACCGTAGACGAGTCTG+TGG - chr2.1:43469958-43469977 MS.gene75906:CDS 50.0%
TGTGTGGCACAAAAACCCCA+TGG - chr2.1:43471426-43471445 MS.gene75906:intron 50.0%
TTCCATCACGCAACAGCATG+TGG + chr2.1:43470804-43470823 None:intergenic 50.0%
TTCGGCAATGGTTGTTGCAC+TGG + chr2.1:43471669-43471688 None:intergenic 50.0%
! CATGCTGTTGCGTGATGGAA+AGG - chr2.1:43470804-43470823 MS.gene75906:CDS 50.0%
! TAAGAAGCGTGCAGATGCAG+AGG - chr2.1:43471980-43471999 MS.gene75906:CDS 50.0%
!! CACTGACTCTTGCACTATGG+AGG - chr2.1:43470099-43470118 MS.gene75906:CDS 50.0%
!! TAGCGCTTGGTAGTGCTAAG+AGG - chr2.1:43472003-43472022 MS.gene75906:CDS 50.0%
!! TGGCACTGACTCTTGCACTA+TGG - chr2.1:43470096-43470115 MS.gene75906:CDS 50.0%
!! TTAACTTGGGCTGGCTTTGG+TGG + chr2.1:43471729-43471748 None:intergenic 50.0%
!!! ATCGAAGGCGCTCCTTTTCT+TGG + chr2.1:43471154-43471173 None:intergenic 50.0%
AGCCACATGCTGTTGCGTGA+TGG - chr2.1:43470799-43470818 MS.gene75906:CDS 55.0%
AGTAAGCAGCCGTGCAAGAG+TGG - chr2.1:43471953-43471972 MS.gene75906:CDS 55.0%
CACTATGGAGGATGCTGCTG+GGG - chr2.1:43470111-43470130 MS.gene75906:CDS 55.0%
CAGCAAACAGTGATGTCCCC+GGG + chr2.1:43470147-43470166 None:intergenic 55.0%
CGGATGAACTTGGCACCATG+AGG - chr2.1:43471541-43471560 MS.gene75906:CDS 55.0%
GAATGCCGCCGCAGTTAAGT+TGG - chr2.1:43470030-43470049 MS.gene75906:CDS 55.0%
GACGAGTCTGTGGAATGTGG+GGG - chr2.1:43469968-43469987 MS.gene75906:CDS 55.0%
GCACTATGGAGGATGCTGCT+GGG - chr2.1:43470110-43470129 MS.gene75906:CDS 55.0%
GGAGTCCAACAATCACCGTC+TGG + chr2.1:43471105-43471124 None:intergenic 55.0%
TGCACTATGGAGGATGCTGC+TGG - chr2.1:43470109-43470128 MS.gene75906:CDS 55.0%
TGGTTTCGGAAAGGGAAGCG+AGG - chr2.1:43470059-43470078 MS.gene75906:CDS 55.0%
! GGCCCACAATTAACTTGGGC+TGG + chr2.1:43471738-43471757 None:intergenic 55.0%
GCAACAGCATGTGGCTCCCT+TGG + chr2.1:43470795-43470814 None:intergenic 60.0%
GCAGATGCAGAGGTAGCGCT+TGG - chr2.1:43471990-43472009 MS.gene75906:CDS 60.0%
TGATGTCCCCGGGTGACCTG+CGG + chr2.1:43470137-43470156 None:intergenic 65.0%
GAGGATGCTGCTGGGGCCGC+AGG - chr2.1:43470118-43470137 MS.gene75906:CDS 75.0%
TGCTGGGGCCGCAGGTCACC+CGG - chr2.1:43470126-43470145 MS.gene75906:CDS 75.0%
! CTGGGGCCGCAGGTCACCCG+GGG - chr2.1:43470128-43470147 MS.gene75906:CDS 80.0%
! GCTGGGGCCGCAGGTCACCC+GGG - chr2.1:43470127-43470146 MS.gene75906:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 43469917 43472109 43469917 ID=MS.gene75906
chr2.1 mRNA 43469917 43472109 43469917 ID=MS.gene75906.t1;Parent=MS.gene75906
chr2.1 exon 43471446 43472109 43471446 ID=MS.gene75906.t1.exon1;Parent=MS.gene75906.t1
chr2.1 CDS 43471446 43472109 43471446 ID=cds.MS.gene75906.t1;Parent=MS.gene75906.t1
chr2.1 exon 43469917 43471310 43469917 ID=MS.gene75906.t1.exon2;Parent=MS.gene75906.t1
chr2.1 CDS 43469917 43471310 43469917 ID=cds.MS.gene75906.t1;Parent=MS.gene75906.t1
Gene Sequence

>MS.gene75906

ATGGAAGAAGTAGAAAAGAGGTATATATCCACAGTTGTTGGTGAAACCGTAGACGAGTCTGTGGAATGTGGGGGTCAGATAGTTGAGGATTTGAGTGGAGAAGCTGGGATTGAGAATGCCGCCGCAGTTAAGTTGGATAGAGTGGTTTCGGAAAGGGAAGCGAGGTATCAATCAATAGTTGGCACTGACTCTTGCACTATGGAGGATGCTGCTGGGGCCGCAGGTCACCCGGGGACATCACTGTTTGCTGACATTTTGAAATCGATTGATTCAATACTATACACGAATTGGAATGACGGTAAAGTTGACCGCAACTCCAGTATTGTTGATATTGAGGAAATGTCAAATTTTGGGAATGATAAATTTGATGCCAACTCTAATATTTTTGTTGATATCATGGAAACGATCGATTCGATATTGAATATGCCAATTGTGAACGATAAAGTTGATGGCAGAGCAAGTATTGTACATGAAGTTGTCTGTGGAACTGAAGTTGAAAAGTGTAATGCAATGGAGCAAGTAATAGCTGACAAGGATGTGAGTGGTGTTTCTGCTTTGAATGCTGAACAATCTGATGTACGCGAGGGGATGCTTCAAATAGATGTTGAAGATCAACAAGGAACAGAAAGAAGTAAAACAATGAACCAAACTGCCGAGGTTAAAGGTAAGATATCTGCTGATCTCATTGGTGTTTTTTTTTTCTTTCTTTCAGCTTAACTTGTGGTTGCAATTGAAATTGTTGTAAATGAGAATGTCGTTTAGTTTATAGATAGTGATGCTTGCAGTTCTGTTTGTGCAGGATTGCTGGTATCTATTGACCACGAGGAAAATTTTGATGCTAATGCAATTGCAGAAGAAGGCACTCAAATCACTGACCAAGGGAGCCACATGCTGTTGCGTGATGGAAAGGAAAAACTCAACGAGGAGTCAAATATGAGGCAAAAGGTTGAAGAGCAAGAATGCGTTGACAAGGACAATTCATTTTTTGTTGACGAGGAACAAGATTTGTTGGAAGTTATTGAGTATGCAACTCCTGTTGTTAATACAGTCGATCAAGCTGGTCCTAGAAATTTAAATAATCAAAGCAGCGCGCATCAAAAGCGTAAATATAATTTCAAGGATACTATGCATCCAGCAAAGAAGGAAAAAGGGATGTCAGACCCAATGAATGGTTCTCTGGATTCTCCAGACGGTGATTGTTGGACTCCAGTTCATCTGGTTGCACCTGAACATTCCAAGAAAAGGAGCGCCTTCGATCACTTTGATGATGACTTCAAAATTCAAACTGGGAAAAAAACAATTTATGTTGCAGAAGTTTCAAATACCACAAATTCATCGTTTACAACTGGTGACTGTATTCGTAGGGCTGATAGTCAACTCTCTCAGAAGACAGATGTAGACATTGGTGTTTTTCCTGAGAATAGATTGGATGTTTCTCCTAAAACTGTTGAGCATGATGAGAACACAACAGAATATTCGTCTCTAGTTGATATGCTATCTTCACTTCAGTGTGTGGCACAAAAACCCCATGGAGAACATACTTTTCTCAATGGCATAGGCAGCTTCTTCTCTGATTTCAAGAATTCTGTAATTGTGAGTGCCGATTGGAAAGAGATTTCACGTACGGATGAACTTGGCACCATGAGGAAGAAGAAACTACCCATAGCTGGAACTGGATTTGTTACATTTGAAGATATGAGTGACTTGCATTGTACAGACTGGGTCATTGACAATGGCAATCAAGAGAAACCAGTGCAACAACCATTGCCGAAAAACCAGAAAAAGGACGAACAACTTGTCGCTGCTAAGCCACCAAAGCCAGCCCAAGTTAATTGTGGGCCCTATTCCTGGGTAAAAAATTCTAAAAGCAATCATGCTGAGACTCCTAACAAACCTCCTGGTTATATAGATGAGAATGCTCCTGCTGAGCTTGTTATGAACTTTACCGAGTTCAAATCTGTTCCCTCAGAAACAAACCTTAACAAAATGTTTAGGCGTTTTGGAGAACTAAAGGAATCTGAAACAGAAGTTGACAGAGTAAGCAGCCGTGCAAGAGTGGTCTTTAAGAAGCGTGCAGATGCAGAGGTAGCGCTTGGTAGTGCTAAGAGGTTCAAAATATTTGGCTCAGTACTCGTAAATTACCAGCTTAATTACACTCCAAGCGTGTTCAAAGCTTTGAGAAACAAAACATGA
Protein sequence

>MS.gene75906.t1

MEEVEKRYISTVVGETVDESVECGGQIVEDLSGEAGIENAAAVKLDRVVSEREARYQSIVGTDSCTMEDAAGAAGHPGTSLFADILKSIDSILYTNWNDGKVDRNSSIVDIEEMSNFGNDKFDANSNIFVDIMETIDSILNMPIVNDKVDGRASIVHEVVCGTEVEKCNAMEQVIADKDVSGVSALNAEQSDVREGMLQIDVEDQQGTERSKTMNQTAEVKGLLVSIDHEENFDANAIAEEGTQITDQGSHMLLRDGKEKLNEESNMRQKVEEQECVDKDNSFFVDEEQDLLEVIEYATPVVNTVDQAGPRNLNNQSSAHQKRKYNFKDTMHPAKKEKGMSDPMNGSLDSPDGDCWTPVHLVAPEHSKKRSAFDHFDDDFKIQTGKKTIYVAEVSNTTNSSFTTGDCIRRADSQLSQKTDVDIGVFPENRLDVSPKTVEHDENTTEYSSLVDMLSSLQCVAQKPHGEHTFLNGIGSFFSDFKNSVIVSADWKEISRTDELGTMRKKKLPIAGTGFVTFEDMSDLHCTDWVIDNGNQEKPVQQPLPKNQKKDEQLVAAKPPKPAQVNCGPYSWVKNSKSNHAETPNKPPGYIDENAPAELVMNFTEFKSVPSETNLNKMFRRFGELKESETEVDRVSSRARVVFKKRADAEVALGSAKRFKIFGSVLVNYQLNYTPSVFKALRNKT