Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76262.t1 | RHN82474.1 | 92.4 | 594 | 11 | 1 | 1 | 560 | 1190 | 1783 | 3.10E-305 | 1057 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76262.t1 | A0A072VRG7 | 92.4 | 594 | 11 | 1 | 1 | 560 | 1 | 594 | 2.2e-305 | 1057.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050961 | MS.gene76262 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene051959 | MS.gene76262 | 0.854254 | 1.39E-61 | -1.69E-46 |
| MS.gene051960 | MS.gene76262 | 0.853326 | 2.57E-61 | -1.69E-46 |
| MS.gene052053 | MS.gene76262 | 0.840756 | 7.18E-58 | -1.69E-46 |
| MS.gene052560 | MS.gene76262 | 0.809799 | 1.58E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene76262 | 0.80172 | 7.88E-49 | -1.69E-46 |
| MS.gene057001 | MS.gene76262 | 0.83552 | 1.60E-56 | -1.69E-46 |
| MS.gene05884 | MS.gene76262 | 0.809976 | 1.45E-50 | -1.69E-46 |
| MS.gene06023 | MS.gene76262 | 0.822848 | 1.90E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76262.t1 | MTR_1g111540 | 92.424 | 594 | 11 | 1 | 1 | 560 | 1 | 594 | 0.0 | 1074 |
| MS.gene76262.t1 | MTR_1g111510 | 91.414 | 594 | 17 | 1 | 1 | 560 | 1 | 594 | 0.0 | 1063 |
| MS.gene76262.t1 | MTR_1g111530 | 86.449 | 583 | 45 | 1 | 6 | 554 | 2 | 584 | 0.0 | 991 |
| MS.gene76262.t1 | MTR_1g111550 | 68.143 | 587 | 144 | 5 | 12 | 559 | 11 | 593 | 0.0 | 786 |
| MS.gene76262.t1 | MTR_7g102880 | 57.993 | 588 | 195 | 7 | 16 | 553 | 19 | 604 | 0.0 | 638 |
| MS.gene76262.t1 | MTR_1g050550 | 54.899 | 592 | 212 | 6 | 10 | 549 | 8 | 596 | 0.0 | 628 |
| MS.gene76262.t1 | MTR_1g059080 | 52.840 | 581 | 229 | 4 | 10 | 552 | 8 | 581 | 0.0 | 602 |
| MS.gene76262.t1 | MTR_2g100400 | 33.746 | 566 | 294 | 7 | 20 | 532 | 1 | 538 | 7.89e-96 | 302 |
| MS.gene76262.t1 | MTR_5g090570 | 30.657 | 548 | 314 | 8 | 26 | 532 | 11 | 533 | 7.57e-86 | 276 |
| MS.gene76262.t1 | MTR_7g029015 | 33.103 | 580 | 312 | 12 | 15 | 522 | 1 | 576 | 1.15e-84 | 275 |
| MS.gene76262.t1 | MTR_3g099150 | 31.915 | 564 | 304 | 12 | 21 | 523 | 10 | 554 | 3.07e-79 | 259 |
| MS.gene76262.t1 | MTR_4g073690 | 32.902 | 541 | 299 | 9 | 26 | 523 | 15 | 534 | 1.43e-76 | 252 |
| MS.gene76262.t1 | MTR_4g116210 | 31.541 | 558 | 311 | 11 | 27 | 523 | 12 | 559 | 6.19e-73 | 243 |
| MS.gene76262.t1 | MTR_2g450710 | 30.645 | 558 | 309 | 10 | 27 | 523 | 13 | 553 | 5.33e-70 | 235 |
| MS.gene76262.t1 | MTR_5g022380 | 30.125 | 561 | 313 | 10 | 21 | 538 | 8 | 532 | 1.63e-65 | 223 |
| MS.gene76262.t1 | MTR_5g022380 | 31.579 | 456 | 267 | 9 | 92 | 538 | 3 | 422 | 1.39e-57 | 199 |
| MS.gene76262.t1 | MTR_4g073690 | 32.225 | 391 | 210 | 8 | 26 | 373 | 15 | 393 | 1.35e-44 | 162 |
| MS.gene76262.t1 | MTR_2g104250 | 31.441 | 229 | 114 | 5 | 295 | 523 | 104 | 289 | 4.44e-30 | 120 |
| MS.gene76262.t1 | MTR_5g095240 | 69.014 | 71 | 22 | 0 | 459 | 529 | 2 | 72 | 8.26e-27 | 103 |
| MS.gene76262.t1 | MTR_7g083660 | 23.684 | 570 | 362 | 14 | 26 | 536 | 7 | 562 | 6.45e-22 | 100 |
| MS.gene76262.t1 | MTR_5g026350 | 23.304 | 575 | 364 | 14 | 26 | 535 | 7 | 569 | 1.14e-20 | 96.3 |
| MS.gene76262.t1 | MTR_3g466040 | 23.593 | 551 | 341 | 13 | 15 | 523 | 1 | 513 | 2.03e-15 | 79.3 |
| MS.gene76262.t1 | MTR_3g466110 | 22.593 | 509 | 322 | 10 | 24 | 492 | 5 | 481 | 1.98e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76262.t1 | AT2G39210 | 66.497 | 588 | 150 | 3 | 13 | 553 | 8 | 595 | 0.0 | 772 |
| MS.gene76262.t1 | AT2G28120 | 58.076 | 551 | 194 | 3 | 20 | 535 | 11 | 559 | 0.0 | 634 |
| MS.gene76262.t1 | AT1G74780 | 32.927 | 574 | 284 | 9 | 20 | 533 | 1 | 533 | 7.79e-93 | 294 |
| MS.gene76262.t1 | AT1G18940 | 32.793 | 555 | 285 | 9 | 18 | 523 | 1 | 516 | 1.40e-86 | 278 |
| MS.gene76262.t1 | AT2G34350 | 31.016 | 561 | 297 | 9 | 20 | 529 | 1 | 522 | 2.60e-84 | 272 |
| MS.gene76262.t1 | AT2G34350 | 31.016 | 561 | 297 | 9 | 20 | 529 | 1 | 522 | 2.60e-84 | 272 |
| MS.gene76262.t1 | AT5G50520 | 32.784 | 546 | 295 | 10 | 22 | 522 | 12 | 530 | 5.06e-84 | 271 |
| MS.gene76262.t1 | AT5G50630 | 32.784 | 546 | 295 | 10 | 22 | 522 | 12 | 530 | 5.06e-84 | 271 |
| MS.gene76262.t1 | AT2G34355 | 31.194 | 561 | 288 | 10 | 23 | 529 | 4 | 520 | 9.36e-83 | 268 |
| MS.gene76262.t1 | AT5G14120 | 32.180 | 578 | 317 | 11 | 20 | 531 | 10 | 578 | 2.94e-81 | 265 |
| MS.gene76262.t1 | AT4G34950 | 31.522 | 552 | 306 | 11 | 26 | 522 | 16 | 550 | 1.00e-77 | 256 |
| MS.gene76262.t1 | AT3G01930 | 30.517 | 580 | 327 | 10 | 22 | 532 | 12 | 584 | 1.90e-77 | 256 |
| MS.gene76262.t1 | AT2G16660 | 32.523 | 535 | 304 | 9 | 26 | 522 | 14 | 529 | 8.38e-73 | 242 |
| MS.gene76262.t1 | AT1G80530 | 29.443 | 557 | 307 | 11 | 27 | 523 | 14 | 544 | 4.15e-64 | 219 |
| MS.gene76262.t1 | AT3G01930 | 30.462 | 476 | 289 | 9 | 92 | 532 | 3 | 471 | 6.58e-63 | 214 |
| MS.gene76262.t1 | AT2G34355 | 31.477 | 413 | 227 | 7 | 129 | 529 | 2 | 370 | 2.44e-62 | 209 |
| MS.gene76262.t1 | AT3G01930 | 29.187 | 418 | 223 | 8 | 22 | 370 | 12 | 425 | 8.33e-42 | 156 |
| MS.gene76262.t1 | AT2G16660 | 31.783 | 387 | 214 | 9 | 26 | 373 | 14 | 389 | 3.14e-40 | 150 |
| MS.gene76262.t1 | AT3G01630 | 23.303 | 545 | 348 | 15 | 26 | 523 | 41 | 562 | 5.63e-22 | 100 |
| MS.gene76262.t1 | AT3G01630 | 23.303 | 545 | 348 | 15 | 26 | 523 | 23 | 544 | 7.07e-22 | 99.8 |
| MS.gene76262.t1 | AT5G45275 | 23.944 | 568 | 344 | 14 | 26 | 523 | 7 | 556 | 5.22e-21 | 97.4 |
| MS.gene76262.t1 | AT4G19450 | 22.913 | 563 | 358 | 13 | 26 | 523 | 7 | 558 | 2.02e-20 | 95.5 |
| MS.gene76262.t1 | AT1G31470 | 21.646 | 559 | 374 | 14 | 26 | 544 | 43 | 577 | 1.66e-18 | 89.4 |
| MS.gene76262.t1 | AT4G19450 | 22.963 | 405 | 244 | 9 | 26 | 366 | 7 | 407 | 3.13e-14 | 75.5 |
Find 93 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAACTTTGTATAATTT+TGG | 0.150653 | 1.1:+78711561 | MS.gene76262:CDS |
| AACACATCTTCCCACCATTT+TGG | 0.178261 | 1.1:-78711105 | None:intergenic |
| TGAATCTCGTGGAGCGGTTT+TGG | 0.179701 | 1.1:+78710603 | MS.gene76262:CDS |
| TGCTGTTGTTTCACTTATTT+TGG | 0.181515 | 1.1:+78711773 | MS.gene76262:CDS |
| GTGTGAAACTACTATTCTTC+TGG | 0.254372 | 1.1:-78710873 | None:intergenic |
| GGTAATTCCATTGGTGTTCA+TGG | 0.287263 | 1.1:+78710160 | MS.gene76262:CDS |
| TCCATTGGTGTTCATGGTTT+AGG | 0.309919 | 1.1:+78710166 | MS.gene76262:CDS |
| AAAGGCTATGTTGGTCTTAG+TGG | 0.334364 | 1.1:+78710634 | MS.gene76262:CDS |
| AAAACCGCTCCACGAGATTC+AGG | 0.337223 | 1.1:-78710601 | None:intergenic |
| TACGTAGCATCAGTAATAAT+TGG | 0.344334 | 1.1:+78711471 | MS.gene76262:CDS |
| TATGTTTCACTTGGTCTAGC+TGG | 0.356602 | 1.1:+78710826 | MS.gene76262:CDS |
| GTAAGCATTTGGAATTATCT+AGG | 0.357538 | 1.1:+78711312 | MS.gene76262:CDS |
| CTTGGAAAGCATAGAATAGA+AGG | 0.363836 | 1.1:+78711675 | MS.gene76262:CDS |
| AGTTTCACACAGGGTGAGTT+TGG | 0.364101 | 1.1:+78710886 | MS.gene76262:CDS |
| TTGACAGCAATTGATAATCT+TGG | 0.365572 | 1.1:+78711231 | MS.gene76262:CDS |
| ACCACCGTCCAGTGATGAAT+TGG | 0.373029 | 1.1:-78710210 | None:intergenic |
| TCGACAAGTTAATGAGCTTA+AGG | 0.376160 | 1.1:+78710786 | MS.gene76262:CDS |
| AGCTCATTAACTTGTCGAAC+AGG | 0.383560 | 1.1:-78710781 | None:intergenic |
| CTATTTGTGGCATGTATTTG+TGG | 0.387438 | 1.1:+78711195 | MS.gene76262:CDS |
| TGGTCTAGCTGGATTCTTGT+TGG | 0.399810 | 1.1:+78710837 | MS.gene76262:CDS |
| TTGTGTCTTTAGTAAGCATT+TGG | 0.401481 | 1.1:+78711301 | MS.gene76262:CDS |
| GTGGCATGTATTTGTGGTGT+TGG | 0.412454 | 1.1:+78711201 | MS.gene76262:CDS |
| AGATATGTTGATACTATTTG+TGG | 0.416529 | 1.1:+78711182 | MS.gene76262:CDS |
| CTCCGGCGGCTGCCATGATT+AGG | 0.422545 | 1.1:-78710252 | None:intergenic |
| AGAGTTAAAGTAAGCATAAG+AGG | 0.426460 | 1.1:-78711393 | None:intergenic |
| ATTGATAATCTTGGTCAGAT+AGG | 0.426987 | 1.1:+78711240 | MS.gene76262:CDS |
| CAAAGAAGCTAAGAAACAAT+TGG | 0.433049 | 1.1:+78711647 | MS.gene76262:CDS |
| AACTCTCTTTGTCTCATGTG+TGG | 0.433894 | 1.1:+78711410 | MS.gene76262:CDS |
| TCATTGAAGAGAACAAGATT+TGG | 0.435135 | 1.1:+78710962 | MS.gene76262:CDS |
| AGCAACGTTGGTGTTCTTGC+AGG | 0.437111 | 1.1:+78710373 | MS.gene76262:CDS |
| GTACAGAGAAGAAGCTGAAA+TGG | 0.437234 | 1.1:+78711839 | MS.gene76262:CDS |
| ACTCTCTTTGTCTCATGTGT+GGG | 0.443330 | 1.1:+78711411 | MS.gene76262:CDS |
| GGAATTCTTAAAGGCTATGT+TGG | 0.464341 | 1.1:+78710625 | MS.gene76262:CDS |
| TTTCGCCTCCTTCCTAATCA+TGG | 0.475895 | 1.1:+78710240 | MS.gene76262:CDS |
| ACCGAACATGTAGGTGGCTC+CGG | 0.476564 | 1.1:-78710269 | None:intergenic |
| TAAGGAGGTTTAGTGTACTT+TGG | 0.479046 | 1.1:-78710330 | None:intergenic |
| AATTTCTTGTATGTTTCACT+TGG | 0.485779 | 1.1:+78710817 | MS.gene76262:CDS |
| ATGGCGGTTGGTAATTCCAT+TGG | 0.489991 | 1.1:+78710151 | MS.gene76262:CDS |
| GCCGGAGCCACCTACATGTT+CGG | 0.490142 | 1.1:+78710268 | MS.gene76262:CDS |
| CCTTCTGTTACTATTTGCAC+TGG | 0.490393 | 1.1:-78711018 | None:intergenic |
| GGAAGTGTAGCAAGTCCACT+TGG | 0.496445 | 1.1:+78711582 | MS.gene76262:CDS |
| GCACATCAAATGCTATCAAA+AGG | 0.500092 | 1.1:-78711437 | None:intergenic |
| GCATGTATTTGTGGTGTTGG+TGG | 0.506795 | 1.1:+78711204 | MS.gene76262:CDS |
| CAACGAGCTCTATCCACCTT+GGG | 0.507861 | 1.1:+78710402 | MS.gene76262:CDS |
| TTCCTAATCATGGCAGCCGC+CGG | 0.509362 | 1.1:+78710250 | MS.gene76262:CDS |
| AAAGCAAAAGAAATAGCAGC+AGG | 0.519094 | 1.1:-78710733 | None:intergenic |
| TATTGTATAATCATCACCTC+TGG | 0.521894 | 1.1:-78711139 | None:intergenic |
| GTTACTATTTGCACTGGTGA+AGG | 0.536206 | 1.1:-78711012 | None:intergenic |
| AACAGGTTTCATATATCGAA+TGG | 0.538846 | 1.1:-78710764 | None:intergenic |
| AAACCGCTCCACGAGATTCA+GGG | 0.539064 | 1.1:-78710600 | None:intergenic |
| CTCACTGTCCAATTCATCAC+TGG | 0.540820 | 1.1:+78710202 | MS.gene76262:CDS |
| AAGAAACAATTGGAAGCACT+TGG | 0.542138 | 1.1:+78711657 | MS.gene76262:CDS |
| ACAGAGGAAGATGACAAAGT+TGG | 0.548475 | 1.1:+78711885 | MS.gene76262:CDS |
| GTATAATCATCACCTCTGGC+TGG | 0.551037 | 1.1:-78711135 | None:intergenic |
| AAGAATTTCCCTGAATCTCG+TGG | 0.557284 | 1.1:+78710592 | MS.gene76262:CDS |
| TCCTAAACCATGAACACCAA+TGG | 0.558988 | 1.1:-78710167 | None:intergenic |
| TGCAGCGGTAATAATAATGA+AGG | 0.565571 | 1.1:-78711739 | None:intergenic |
| TAATCATCACCTCTGGCTGG+TGG | 0.569807 | 1.1:-78711132 | None:intergenic |
| GATGCTACGTAGAGACCCTC+TGG | 0.570225 | 1.1:-78711459 | None:intergenic |
| GGCGGCTGCCATGATTAGGA+AGG | 0.570452 | 1.1:-78710248 | None:intergenic |
| GTTTGGTTTAAGTGCTGCTG+TGG | 0.571063 | 1.1:+78710903 | MS.gene76262:CDS |
| GTGCTTAATGTGAAGATCAC+TGG | 0.572972 | 1.1:+78711612 | MS.gene76262:CDS |
| TCAACGAGCTCTATCCACCT+TGG | 0.580814 | 1.1:+78710401 | MS.gene76262:CDS |
| GGGCATGAATTGAATTGTGT+TGG | 0.581328 | 1.1:+78711696 | MS.gene76262:CDS |
| TCAATGAAAACAACGGCAAG+TGG | 0.581784 | 1.1:-78710946 | None:intergenic |
| AAAGTAAGCATAAGAGGACG+AGG | 0.591288 | 1.1:-78711387 | None:intergenic |
| GGCTGCCATGATTAGGAAGG+AGG | 0.603051 | 1.1:-78710245 | None:intergenic |
| GAAGAATAGTAGTTTCACAC+AGG | 0.608304 | 1.1:+78710876 | MS.gene76262:CDS |
| CAGAGAAGAAGCTGAAATGG+TGG | 0.612740 | 1.1:+78711842 | MS.gene76262:CDS |
| GTTCTCTTCAATGAAAACAA+CGG | 0.618801 | 1.1:-78710953 | None:intergenic |
| GATAGCATTTGATGTGCCAG+AGG | 0.622156 | 1.1:+78711443 | MS.gene76262:CDS |
| ATAGCATTTGATGTGCCAGA+GGG | 0.623868 | 1.1:+78711444 | MS.gene76262:CDS |
| CTGTCCAATTCATCACTGGA+CGG | 0.625789 | 1.1:+78710206 | MS.gene76262:CDS |
| GAAGTGTAGCAAGTCCACTT+GGG | 0.626081 | 1.1:+78711583 | MS.gene76262:CDS |
| TTAAGCACATATAGCCCAAG+TGG | 0.628505 | 1.1:-78711597 | None:intergenic |
| CCTATTGTTAAAACTACCCA+AGG | 0.629761 | 1.1:-78710418 | None:intergenic |
| AGAAGAAGCTGAAATGGTGG+AGG | 0.632991 | 1.1:+78711845 | MS.gene76262:CDS |
| TACATGTTCGGTCTATACTC+CGG | 0.641076 | 1.1:+78710280 | MS.gene76262:CDS |
| CCAGTGCAAATAGTAACAGA+AGG | 0.641583 | 1.1:+78711018 | MS.gene76262:CDS |
| TATTTATTATGATGACACAA+AGG | 0.646380 | 1.1:+78710684 | MS.gene76262:CDS |
| GGAGTATAGACCGAACATGT+AGG | 0.649476 | 1.1:-78710278 | None:intergenic |
| GAACATGTAGGTGGCTCCGG+CGG | 0.649974 | 1.1:-78710266 | None:intergenic |
| TTGGAAAGCATAGAATAGAA+GGG | 0.652646 | 1.1:+78711676 | MS.gene76262:CDS |
| TTTCCCTGAATCTCGTGGAG+CGG | 0.655768 | 1.1:+78710597 | MS.gene76262:CDS |
| ACAAAGGTGACATATACAAG+AGG | 0.662424 | 1.1:+78711817 | MS.gene76262:CDS |
| ATTGTTAAAACTACCCAAGG+TGG | 0.665582 | 1.1:-78710415 | None:intergenic |
| AGTTGGTCAACAGCAGCATG+TGG | 0.667095 | 1.1:+78711902 | MS.gene76262:CDS |
| GTGTTCAATCCACCAGCCAG+AGG | 0.678931 | 1.1:+78711123 | MS.gene76262:CDS |
| AAAGAACGTGGAAAAGACAG+AGG | 0.686229 | 1.1:+78711869 | MS.gene76262:CDS |
| GTATAGACCGAACATGTAGG+TGG | 0.689369 | 1.1:-78710275 | None:intergenic |
| AAGAATAGTAGTTTCACACA+GGG | 0.699884 | 1.1:+78710877 | MS.gene76262:CDS |
| TCCAATTCATCACTGGACGG+TGG | 0.711381 | 1.1:+78710209 | MS.gene76262:CDS |
| AATGGTGGAGGTAAAGAACG+TGG | 0.730173 | 1.1:+78711857 | MS.gene76262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATTATGATGACACAA+AGG | + | chr1.1:78710684-78710703 | MS.gene76262:CDS | 20.0% |
| !!! | CAAAATCTTTGAAAAAACTA+AGG | - | chr1.1:78710351-78710370 | None:intergenic | 20.0% |
| !!! | CTTAGTTTTTTCAAAGATTT+TGG | + | chr1.1:78710349-78710368 | MS.gene76262:CDS | 20.0% |
| !!! | GTAATAATTGGATTTTGTTT+TGG | + | chr1.1:78711483-78711502 | MS.gene76262:CDS | 20.0% |
| !!! | TATGCAACTTTGTATAATTT+TGG | + | chr1.1:78711561-78711580 | MS.gene76262:CDS | 20.0% |
| !!! | TTTTTGGTTACTTTATGATT+TGG | + | chr1.1:78710455-78710474 | MS.gene76262:intron | 20.0% |
| ! | AAAAAAAGATCCAAAATGGT+GGG | + | chr1.1:78711095-78711114 | MS.gene76262:CDS | 25.0% |
| ! | AATTTCTTGTATGTTTCACT+TGG | + | chr1.1:78710817-78710836 | MS.gene76262:CDS | 25.0% |
| ! | AGATATGTTGATACTATTTG+TGG | + | chr1.1:78711182-78711201 | MS.gene76262:CDS | 25.0% |
| ! | ATGTGTCTTTACATTTGTAT+AGG | + | chr1.1:78710520-78710539 | MS.gene76262:intron | 25.0% |
| ! | GATATAATGGCAAAAAGTAA+TGG | - | chr1.1:78711519-78711538 | None:intergenic | 25.0% |
| !! | AATCTTTGAAAAAACTAAGG+AGG | - | chr1.1:78710348-78710367 | None:intergenic | 25.0% |
| !! | CCATTATATCAGAACTTTTT+GGG | + | chr1.1:78711529-78711548 | MS.gene76262:CDS | 25.0% |
| !!! | AAGGCTTTGATTTTGTTTAT+TGG | + | chr1.1:78710703-78710722 | MS.gene76262:CDS | 25.0% |
| !!! | CTTTGATTTTGTTTATTGGT+TGG | + | chr1.1:78710707-78710726 | MS.gene76262:CDS | 25.0% |
| !!! | TTTTGGTCTTGCTATTTTTT+TGG | - | chr1.1:78710491-78710510 | None:intergenic | 25.0% |
| AAATAGCAAGACCAAAAGTT+TGG | + | chr1.1:78710494-78710513 | MS.gene76262:intron | 30.0% | |
| AACAGGTTTCATATATCGAA+TGG | - | chr1.1:78710767-78710786 | None:intergenic | 30.0% | |
| AAGAATAGTAGTTTCACACA+GGG | + | chr1.1:78710877-78710896 | MS.gene76262:CDS | 30.0% | |
| AGAGTTAAAGTAAGCATAAG+AGG | - | chr1.1:78711396-78711415 | None:intergenic | 30.0% | |
| CAAAAAAAGATCCAAAATGG+TGG | + | chr1.1:78711094-78711113 | MS.gene76262:CDS | 30.0% | |
| CAAAGAAGCTAAGAAACAAT+TGG | + | chr1.1:78711647-78711666 | MS.gene76262:CDS | 30.0% | |
| CTCCAAAAAAAGATCCAAAA+TGG | + | chr1.1:78711091-78711110 | MS.gene76262:CDS | 30.0% | |
| GTTCTCTTCAATGAAAACAA+CGG | - | chr1.1:78710956-78710975 | None:intergenic | 30.0% | |
| TACGTAGCATCAGTAATAAT+TGG | + | chr1.1:78711471-78711490 | MS.gene76262:CDS | 30.0% | |
| TATTGTATAATCATCACCTC+TGG | - | chr1.1:78711142-78711161 | None:intergenic | 30.0% | |
| TCATTGAAGAGAACAAGATT+TGG | + | chr1.1:78710962-78710981 | MS.gene76262:CDS | 30.0% | |
| TTGTGTCTTTAGTAAGCATT+TGG | + | chr1.1:78711301-78711320 | MS.gene76262:CDS | 30.0% | |
| ! | AGGACAAGAAAGTTTTACAA+AGG | + | chr1.1:78711801-78711820 | MS.gene76262:CDS | 30.0% |
| ! | ATTGATAATCTTGGTCAGAT+AGG | + | chr1.1:78711240-78711259 | MS.gene76262:CDS | 30.0% |
| ! | CACCATTTTGGATCTTTTTT+TGG | - | chr1.1:78711096-78711115 | None:intergenic | 30.0% |
| ! | CCCAAAAAGTTCTGATATAA+TGG | - | chr1.1:78711532-78711551 | None:intergenic | 30.0% |
| ! | GCCATTATATCAGAACTTTT+TGG | + | chr1.1:78711528-78711547 | MS.gene76262:CDS | 30.0% |
| ! | GTAAGCATTTGGAATTATCT+AGG | + | chr1.1:78711312-78711331 | MS.gene76262:CDS | 30.0% |
| ! | TTGACAGCAATTGATAATCT+TGG | + | chr1.1:78711231-78711250 | MS.gene76262:CDS | 30.0% |
| ! | TTGGAAAGCATAGAATAGAA+GGG | + | chr1.1:78711676-78711695 | MS.gene76262:CDS | 30.0% |
| !! | AAAGTGCTTATGCTTTTCTT+TGG | - | chr1.1:78711282-78711301 | None:intergenic | 30.0% |
| !!! | AAGTGTTGTTTTTATGTCAC+CGG | - | chr1.1:78710302-78710321 | None:intergenic | 30.0% |
| !!! | GGTGCTATACTAAACTTTTT+TGG | + | chr1.1:78710439-78710458 | MS.gene76262:intron | 30.0% |
| !!! | TGCTGTTGTTTCACTTATTT+TGG | + | chr1.1:78711773-78711792 | MS.gene76262:CDS | 30.0% |
| !!! | TGTTGTTTCACTTATTTTGG+TGG | + | chr1.1:78711776-78711795 | MS.gene76262:CDS | 30.0% |
| AAAGCAAAAGAAATAGCAGC+AGG | - | chr1.1:78710736-78710755 | None:intergenic | 35.0% | |
| ACAAAGGTGACATATACAAG+AGG | + | chr1.1:78711817-78711836 | MS.gene76262:CDS | 35.0% | |
| ATTGTTAAAACTACCCAAGG+TGG | - | chr1.1:78710418-78710437 | None:intergenic | 35.0% | |
| CCTATTGTTAAAACTACCCA+AGG | - | chr1.1:78710421-78710440 | None:intergenic | 35.0% | |
| CTATTTGTGGCATGTATTTG+TGG | + | chr1.1:78711195-78711214 | MS.gene76262:CDS | 35.0% | |
| GAAGAATAGTAGTTTCACAC+AGG | + | chr1.1:78710876-78710895 | MS.gene76262:CDS | 35.0% | |
| GCACATCAAATGCTATCAAA+AGG | - | chr1.1:78711440-78711459 | None:intergenic | 35.0% | |
| GGAATTCTTAAAGGCTATGT+TGG | + | chr1.1:78710625-78710644 | MS.gene76262:CDS | 35.0% | |
| GGTGACATAAAAACAACACT+TGG | + | chr1.1:78710301-78710320 | MS.gene76262:CDS | 35.0% | |
| GTGTGAAACTACTATTCTTC+TGG | - | chr1.1:78710876-78710895 | None:intergenic | 35.0% | |
| TAAGGAGGTTTAGTGTACTT+TGG | - | chr1.1:78710333-78710352 | None:intergenic | 35.0% | |
| TCGACAAGTTAATGAGCTTA+AGG | + | chr1.1:78710786-78710805 | MS.gene76262:CDS | 35.0% | |
| TGCAGCGGTAATAATAATGA+AGG | - | chr1.1:78711742-78711761 | None:intergenic | 35.0% | |
| ! | AGACACATTTGCCAAACTTT+TGG | - | chr1.1:78710508-78710527 | None:intergenic | 35.0% |
| ! | CTTGGAAAGCATAGAATAGA+AGG | + | chr1.1:78711675-78711694 | MS.gene76262:CDS | 35.0% |
| ! | GCAGAGTAAAAAACTAGCTT+TGG | + | chr1.1:78710984-78711003 | MS.gene76262:CDS | 35.0% |
| ! | TTCTCAGTCTTTTGCAAACA+CGG | + | chr1.1:78710549-78710568 | MS.gene76262:CDS | 35.0% |
| !! | AAAGATTTTGGTAGCAACGT+TGG | + | chr1.1:78710361-78710380 | MS.gene76262:CDS | 35.0% |
| !! | AAGAAACAATTGGAAGCACT+TGG | + | chr1.1:78711657-78711676 | MS.gene76262:CDS | 35.0% |
| !!! | ATTACCGCTGCAACATTTTT+TGG | + | chr1.1:78711750-78711769 | MS.gene76262:CDS | 35.0% |
| !!! | CCTTGGGTAGTTTTAACAAT+AGG | + | chr1.1:78710418-78710437 | MS.gene76262:CDS | 35.0% |
| !!! | GATTTTGTTTTGGTGCTCAA+TGG | + | chr1.1:78711493-78711512 | MS.gene76262:CDS | 35.0% |
| !!! | TTTCACTTATTTTGGTGGCT+AGG | + | chr1.1:78711781-78711800 | MS.gene76262:CDS | 35.0% |
| AAAGAACGTGGAAAAGACAG+AGG | + | chr1.1:78711869-78711888 | MS.gene76262:CDS | 40.0% | |
| AAAGTAAGCATAAGAGGACG+AGG | - | chr1.1:78711390-78711409 | None:intergenic | 40.0% | |
| AACTCTCTTTGTCTCATGTG+TGG | + | chr1.1:78711410-78711429 | MS.gene76262:CDS | 40.0% | |
| AAGAATTTCCCTGAATCTCG+TGG | + | chr1.1:78710592-78710611 | MS.gene76262:CDS | 40.0% | |
| ACAGAGGAAGATGACAAAGT+TGG | + | chr1.1:78711885-78711904 | MS.gene76262:CDS | 40.0% | |
| ACTCTCTTTGTCTCATGTGT+GGG | + | chr1.1:78711411-78711430 | MS.gene76262:CDS | 40.0% | |
| AGCACCAAAAAATGTTGCAG+CGG | - | chr1.1:78711757-78711776 | None:intergenic | 40.0% | |
| ATAGCATTTGATGTGCCAGA+GGG | + | chr1.1:78711444-78711463 | MS.gene76262:CDS | 40.0% | |
| CCAGTGCAAATAGTAACAGA+AGG | + | chr1.1:78711018-78711037 | MS.gene76262:CDS | 40.0% | |
| CCTTCTGTTACTATTTGCAC+TGG | - | chr1.1:78711021-78711040 | None:intergenic | 40.0% | |
| GGGCATGAATTGAATTGTGT+TGG | + | chr1.1:78711696-78711715 | MS.gene76262:CDS | 40.0% | |
| GTACAGAGAAGAAGCTGAAA+TGG | + | chr1.1:78711839-78711858 | MS.gene76262:CDS | 40.0% | |
| GTGCTTAATGTGAAGATCAC+TGG | + | chr1.1:78711612-78711631 | MS.gene76262:CDS | 40.0% | |
| TACATGTTCGGTCTATACTC+CGG | + | chr1.1:78710280-78710299 | MS.gene76262:CDS | 40.0% | |
| TATGTTTCACTTGGTCTAGC+TGG | + | chr1.1:78710826-78710845 | MS.gene76262:CDS | 40.0% | |
| TCAATGAAAACAACGGCAAG+TGG | - | chr1.1:78710949-78710968 | None:intergenic | 40.0% | |
| TCCTAAACCATGAACACCAA+TGG | - | chr1.1:78710170-78710189 | None:intergenic | 40.0% | |
| TTAAGCACATATAGCCCAAG+TGG | - | chr1.1:78711600-78711619 | None:intergenic | 40.0% | |
| ! | AACACATCTTCCCACCATTT+TGG | - | chr1.1:78711108-78711127 | None:intergenic | 40.0% |
| ! | GGTAATTCCATTGGTGTTCA+TGG | + | chr1.1:78710160-78710179 | MS.gene76262:CDS | 40.0% |
| ! | GTTACTATTTGCACTGGTGA+AGG | - | chr1.1:78711015-78711034 | None:intergenic | 40.0% |
| ! | TCCATTGGTGTTCATGGTTT+AGG | + | chr1.1:78710166-78710185 | MS.gene76262:CDS | 40.0% |
| ! | TCTCAGTCTTTTGCAAACAC+GGG | + | chr1.1:78710550-78710569 | MS.gene76262:CDS | 40.0% |
| !! | AAAGGCTATGTTGGTCTTAG+TGG | + | chr1.1:78710634-78710653 | MS.gene76262:CDS | 40.0% |
| !! | AGCTCATTAACTTGTCGAAC+AGG | - | chr1.1:78710784-78710803 | None:intergenic | 40.0% |
| !! | TATCTAGGACGTGTTTTCTC+AGG | + | chr1.1:78711327-78711346 | MS.gene76262:CDS | 40.0% |
| !!! | GCGGTTTTGGGAATTCTTAA+AGG | + | chr1.1:78710616-78710635 | MS.gene76262:CDS | 40.0% |
| AGAAGAAGCTGAAATGGTGG+AGG | + | chr1.1:78711845-78711864 | MS.gene76262:CDS | 45.0% | |
| AGTTTCACACAGGGTGAGTT+TGG | + | chr1.1:78710886-78710905 | MS.gene76262:CDS | 45.0% | |
| CAGAGAAGAAGCTGAAATGG+TGG | + | chr1.1:78711842-78711861 | MS.gene76262:CDS | 45.0% | |
| CTCACTGTCCAATTCATCAC+TGG | + | chr1.1:78710202-78710221 | MS.gene76262:CDS | 45.0% | |
| CTGTCCAATTCATCACTGGA+CGG | + | chr1.1:78710206-78710225 | MS.gene76262:CDS | 45.0% | |
| GAAGTGTAGCAAGTCCACTT+GGG | + | chr1.1:78711583-78711602 | MS.gene76262:CDS | 45.0% | |
| GATAGCATTTGATGTGCCAG+AGG | + | chr1.1:78711443-78711462 | MS.gene76262:CDS | 45.0% | |
| GGAGTATAGACCGAACATGT+AGG | - | chr1.1:78710281-78710300 | None:intergenic | 45.0% | |
| GTATAATCATCACCTCTGGC+TGG | - | chr1.1:78711138-78711157 | None:intergenic | 45.0% | |
| GTATAGACCGAACATGTAGG+TGG | - | chr1.1:78710278-78710297 | None:intergenic | 45.0% | |
| GTGGCATGTATTTGTGGTGT+TGG | + | chr1.1:78711201-78711220 | MS.gene76262:CDS | 45.0% | |
| TGGTCTAGCTGGATTCTTGT+TGG | + | chr1.1:78710837-78710856 | MS.gene76262:CDS | 45.0% | |
| TTTCGCCTCCTTCCTAATCA+TGG | + | chr1.1:78710240-78710259 | MS.gene76262:CDS | 45.0% | |
| ! | AATGGTGGAGGTAAAGAACG+TGG | + | chr1.1:78711857-78711876 | MS.gene76262:CDS | 45.0% |
| ! | GCATGTATTTGTGGTGTTGG+TGG | + | chr1.1:78711204-78711223 | MS.gene76262:CDS | 45.0% |
| ! | GTTTGGTTTAAGTGCTGCTG+TGG | + | chr1.1:78710903-78710922 | MS.gene76262:CDS | 45.0% |
| !! | ATGGCGGTTGGTAATTCCAT+TGG | + | chr1.1:78710151-78710170 | MS.gene76262:CDS | 45.0% |
| AAAACCGCTCCACGAGATTC+AGG | - | chr1.1:78710604-78710623 | None:intergenic | 50.0% | |
| AAACCGCTCCACGAGATTCA+GGG | - | chr1.1:78710603-78710622 | None:intergenic | 50.0% | |
| ACCACCGTCCAGTGATGAAT+TGG | - | chr1.1:78710213-78710232 | None:intergenic | 50.0% | |
| AGTTGGTCAACAGCAGCATG+TGG | + | chr1.1:78711902-78711921 | MS.gene76262:CDS | 50.0% | |
| CAACGAGCTCTATCCACCTT+GGG | + | chr1.1:78710402-78710421 | MS.gene76262:CDS | 50.0% | |
| TAATCATCACCTCTGGCTGG+TGG | - | chr1.1:78711135-78711154 | None:intergenic | 50.0% | |
| TCAACGAGCTCTATCCACCT+TGG | + | chr1.1:78710401-78710420 | MS.gene76262:CDS | 50.0% | |
| TCCAATTCATCACTGGACGG+TGG | + | chr1.1:78710209-78710228 | MS.gene76262:CDS | 50.0% | |
| TTTCCCTGAATCTCGTGGAG+CGG | + | chr1.1:78710597-78710616 | MS.gene76262:CDS | 50.0% | |
| ! | AGCAACGTTGGTGTTCTTGC+AGG | + | chr1.1:78710373-78710392 | MS.gene76262:CDS | 50.0% |
| ! | GAATCTCGTGGAGCGGTTTT+GGG | + | chr1.1:78710604-78710623 | MS.gene76262:CDS | 50.0% |
| ! | GGAAGTGTAGCAAGTCCACT+TGG | + | chr1.1:78711582-78711601 | MS.gene76262:CDS | 50.0% |
| ! | TGAATCTCGTGGAGCGGTTT+TGG | + | chr1.1:78710603-78710622 | MS.gene76262:CDS | 50.0% |
| ACCGAACATGTAGGTGGCTC+CGG | - | chr1.1:78710272-78710291 | None:intergenic | 55.0% | |
| GATGCTACGTAGAGACCCTC+TGG | - | chr1.1:78711462-78711481 | None:intergenic | 55.0% | |
| GGCTGCCATGATTAGGAAGG+AGG | - | chr1.1:78710248-78710267 | None:intergenic | 55.0% | |
| GTGTTCAATCCACCAGCCAG+AGG | + | chr1.1:78711123-78711142 | MS.gene76262:CDS | 55.0% | |
| TTCCTAATCATGGCAGCCGC+CGG | + | chr1.1:78710250-78710269 | MS.gene76262:CDS | 55.0% | |
| GAACATGTAGGTGGCTCCGG+CGG | - | chr1.1:78710269-78710288 | None:intergenic | 60.0% | |
| GCCGGAGCCACCTACATGTT+CGG | + | chr1.1:78710268-78710287 | MS.gene76262:CDS | 60.0% | |
| GGCGGCTGCCATGATTAGGA+AGG | - | chr1.1:78710251-78710270 | None:intergenic | 60.0% | |
| CTCCGGCGGCTGCCATGATT+AGG | - | chr1.1:78710255-78710274 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78710151 | 78711935 | 78710151 | ID=MS.gene76262 |
| chr1.1 | mRNA | 78710151 | 78711935 | 78710151 | ID=MS.gene76262.t1;Parent=MS.gene76262 |
| chr1.1 | exon | 78710151 | 78710439 | 78710151 | ID=MS.gene76262.t1.exon1;Parent=MS.gene76262.t1 |
| chr1.1 | CDS | 78710151 | 78710439 | 78710151 | ID=cds.MS.gene76262.t1;Parent=MS.gene76262.t1 |
| chr1.1 | exon | 78710542 | 78711935 | 78710542 | ID=MS.gene76262.t1.exon2;Parent=MS.gene76262.t1 |
| chr1.1 | CDS | 78710542 | 78711935 | 78710542 | ID=cds.MS.gene76262.t1;Parent=MS.gene76262.t1 |
| Gene Sequence |
| Protein sequence |
