Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76493.t1 | XP_003601528.1 | 95.7 | 351 | 15 | 0 | 1 | 351 | 4 | 354 | 3.00E-191 | 677.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76493.t1 | P94026 | 30.3 | 290 | 178 | 13 | 69 | 345 | 62 | 340 | 1.2e-23 | 112.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76493.t1 | G7J8U8 | 95.7 | 351 | 15 | 0 | 1 | 351 | 4 | 354 | 2.2e-191 | 677.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene76493.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050134 | MS.gene76493 | 0.825603 | 4.28E-54 | -1.69E-46 |
MS.gene052664 | MS.gene76493 | 0.800374 | 1.49E-48 | -1.69E-46 |
MS.gene052666 | MS.gene76493 | 0.851295 | 9.74E-61 | -1.69E-46 |
MS.gene053224 | MS.gene76493 | 0.805838 | 1.10E-49 | -1.69E-46 |
MS.gene057641 | MS.gene76493 | 0.801714 | 7.91E-49 | -1.69E-46 |
MS.gene057643 | MS.gene76493 | 0.850273 | 1.89E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76493.t1 | MTR_3g082690 | 95.726 | 351 | 15 | 0 | 1 | 351 | 4 | 354 | 0.0 | 699 |
MS.gene76493.t1 | MTR_6g023320 | 28.797 | 316 | 197 | 10 | 62 | 354 | 65 | 375 | 3.07e-27 | 114 |
MS.gene76493.t1 | MTR_2g101900 | 100.000 | 47 | 0 | 0 | 383 | 429 | 48 | 94 | 6.32e-26 | 100 |
MS.gene76493.t1 | MTR_4g082305 | 31.250 | 320 | 190 | 14 | 40 | 346 | 37 | 339 | 8.05e-25 | 106 |
MS.gene76493.t1 | MTR_0147s0070 | 93.617 | 47 | 3 | 0 | 383 | 429 | 48 | 94 | 2.05e-24 | 97.1 |
MS.gene76493.t1 | MTR_1g115980 | 31.102 | 254 | 159 | 9 | 93 | 343 | 64 | 304 | 7.52e-23 | 99.4 |
MS.gene76493.t1 | MTR_1g115980 | 31.102 | 254 | 159 | 9 | 93 | 343 | 64 | 304 | 8.62e-23 | 100 |
MS.gene76493.t1 | MTR_1g115980 | 31.102 | 254 | 159 | 9 | 93 | 343 | 64 | 304 | 9.63e-23 | 100 |
MS.gene76493.t1 | MTR_1g115980 | 31.102 | 254 | 159 | 9 | 93 | 343 | 64 | 304 | 9.73e-23 | 99.4 |
MS.gene76493.t1 | MTR_1g115980 | 31.102 | 254 | 159 | 9 | 93 | 343 | 64 | 304 | 1.05e-22 | 100 |
MS.gene76493.t1 | MTR_1g115980 | 31.102 | 254 | 159 | 9 | 93 | 343 | 64 | 304 | 1.10e-22 | 100 |
MS.gene76493.t1 | MTR_4g128240 | 23.381 | 278 | 205 | 7 | 57 | 330 | 231 | 504 | 9.30e-18 | 85.9 |
MS.gene76493.t1 | MTR_4g082305 | 31.579 | 228 | 140 | 9 | 40 | 265 | 37 | 250 | 3.91e-17 | 82.8 |
MS.gene76493.t1 | MTR_1g077040 | 22.330 | 309 | 187 | 8 | 66 | 327 | 8 | 310 | 2.62e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76493.t1 | AT3G07670 | 71.552 | 348 | 84 | 4 | 14 | 346 | 9 | 356 | 8.48e-180 | 511 |
MS.gene76493.t1 | AT3G07670 | 82.110 | 218 | 39 | 0 | 129 | 346 | 1 | 218 | 2.54e-132 | 385 |
MS.gene76493.t1 | AT5G14260 | 28.852 | 305 | 190 | 8 | 62 | 344 | 78 | 377 | 1.92e-28 | 116 |
MS.gene76493.t1 | AT5G14260 | 28.852 | 305 | 190 | 8 | 62 | 344 | 78 | 377 | 5.00e-28 | 116 |
MS.gene76493.t1 | AT5G14260 | 28.852 | 305 | 190 | 8 | 62 | 344 | 78 | 377 | 5.00e-28 | 116 |
MS.gene76493.t1 | AT5G14260 | 28.852 | 305 | 190 | 8 | 62 | 344 | 78 | 377 | 5.00e-28 | 116 |
MS.gene76493.t1 | AT3G55080 | 30.909 | 275 | 162 | 10 | 78 | 343 | 59 | 314 | 1.64e-24 | 105 |
MS.gene76493.t1 | AT1G14030 | 31.229 | 301 | 180 | 15 | 62 | 347 | 47 | 335 | 7.49e-23 | 100 |
MS.gene76493.t1 | AT1G52300 | 87.234 | 47 | 6 | 0 | 383 | 429 | 48 | 94 | 6.23e-22 | 90.1 |
MS.gene76493.t1 | AT3G55080 | 30.242 | 248 | 146 | 9 | 105 | 343 | 1 | 230 | 1.02e-21 | 96.7 |
MS.gene76493.t1 | AT3G55080 | 30.242 | 248 | 146 | 9 | 105 | 343 | 1 | 230 | 1.02e-21 | 96.7 |
MS.gene76493.t1 | AT3G16080 | 85.106 | 47 | 7 | 0 | 383 | 429 | 48 | 94 | 4.61e-21 | 87.8 |
MS.gene76493.t1 | AT1G15250 | 82.979 | 47 | 8 | 0 | 383 | 429 | 48 | 94 | 2.30e-20 | 85.9 |
MS.gene76493.t1 | AT1G15250 | 82.979 | 47 | 8 | 0 | 383 | 429 | 48 | 94 | 2.30e-20 | 85.9 |
MS.gene76493.t1 | AT3G55080 | 29.439 | 214 | 127 | 8 | 139 | 343 | 1 | 199 | 2.12e-18 | 86.7 |
MS.gene76493.t1 | AT3G55080 | 29.224 | 219 | 126 | 9 | 139 | 343 | 1 | 204 | 2.98e-17 | 83.2 |
MS.gene76493.t1 | AT2G18850 | 26.224 | 286 | 168 | 10 | 62 | 326 | 148 | 411 | 1.18e-16 | 82.4 |
MS.gene76493.t1 | AT2G18850 | 25.773 | 291 | 173 | 10 | 62 | 331 | 148 | 416 | 1.28e-16 | 82.4 |
Find 100 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGCCCAAAACAACTAAATT+TGG | 0.158317 | 2.3:+2305030 | MS.gene76493:intron |
AGGGAAGAAATCAGGGTATT+TGG | 0.193374 | 2.3:-2300931 | None:intergenic |
GAAAGGACTAATAATGTTAT+TGG | 0.198637 | 2.3:+2300725 | MS.gene76493:CDS |
TTCAATACTTCACCAGCTTC+TGG | 0.207488 | 2.3:-2298783 | None:intergenic |
AAGCCCAAATTTAGTTGTTT+TGG | 0.234856 | 2.3:-2305034 | None:intergenic |
TTAGAACTGTTGAAGAAATA+TGG | 0.237492 | 2.3:+2301797 | MS.gene76493:CDS |
CAGTTCTAACTTCTCCTTAT+AGG | 0.242836 | 2.3:-2301783 | None:intergenic |
TTGAAGAAATATGGATTATC+AGG | 0.251255 | 2.3:+2301806 | MS.gene76493:CDS |
AACCATACTCACTTCTTTAC+TGG | 0.272010 | 2.3:+2298913 | MS.gene76493:CDS |
TGTGATGTAATTACCTCTTC+AGG | 0.272230 | 2.3:-2300951 | None:intergenic |
TTGTTGCTTTGAAGAATATT+AGG | 0.281922 | 2.3:+2298131 | MS.gene76493:CDS |
TGAGACTAGCTTCACTTATA+AGG | 0.286121 | 2.3:-2298845 | None:intergenic |
GTAGGTTCGGTTGCCCTCTA+TGG | 0.292815 | 2.3:+2301244 | MS.gene76493:intron |
CTTGGATTCGTGCCCTCCTT+TGG | 0.311412 | 2.3:-2301716 | None:intergenic |
ACAACCATGGTTGAAGCTTC+AGG | 0.313304 | 2.3:+2297848 | None:intergenic |
ACACAGGTGTTTATTTCATA+TGG | 0.317932 | 2.3:+2301650 | MS.gene76493:intron |
ACTTGGAAGCTTCACAGATT+AGG | 0.329419 | 2.3:+2300690 | MS.gene76493:CDS |
ACCTCTTCAGGGAAGAAATC+AGG | 0.336812 | 2.3:-2300939 | None:intergenic |
AAGGAAGAGTTTACAGAATC+AGG | 0.341934 | 2.3:-2298199 | None:intergenic |
CTTGGAAGCTTCACAGATTA+GGG | 0.342197 | 2.3:+2300691 | MS.gene76493:CDS |
CTCTGCAACCTCATCATTGA+TGG | 0.347009 | 2.3:+2297979 | MS.gene76493:CDS |
CAGATGGTTCAGTTATATAT+CGG | 0.353139 | 2.3:+2298878 | MS.gene76493:CDS |
TACCTGCTCACCTGGTTGAT+AGG | 0.356905 | 2.3:-2301461 | None:intergenic |
GAAAGAATGCATTGGTTCCT+TGG | 0.361542 | 2.3:+2301270 | MS.gene76493:CDS |
ATTCATCTTCTCTTGAGAAA+TGG | 0.363962 | 2.3:+2298041 | MS.gene76493:CDS |
CTCTAAAACCGCTCTTGAAT+CGG | 0.373242 | 2.3:-2305558 | None:intergenic |
GTTGCAAGCAATGGCCAATC+TGG | 0.384726 | 2.3:-2298819 | None:intergenic |
GGCCCAAAACAACTAAATTT+GGG | 0.390550 | 2.3:+2305031 | MS.gene76493:CDS |
GAAATCCGATGAGTCCTATA+AGG | 0.391559 | 2.3:+2301769 | MS.gene76493:CDS |
ATTGATGGAAACTATTCCTT+GGG | 0.394039 | 2.3:+2297994 | MS.gene76493:CDS |
TCAGGAGTGATGACAAGTTC+AGG | 0.394221 | 2.3:-2298181 | None:intergenic |
ATTCACAAAACAACACATCT+TGG | 0.404622 | 2.3:+2297923 | MS.gene76493:CDS |
TACCAGTAAAGAAGTGAGTA+TGG | 0.407176 | 2.3:-2298915 | None:intergenic |
GGGGAGCTTCTGTTATCATA+TGG | 0.410226 | 2.3:+2301686 | MS.gene76493:CDS |
TGAATTGTTTGGTTAAAAGT+AGG | 0.419376 | 2.3:-2297905 | None:intergenic |
CATTGATGGAAACTATTCCT+TGG | 0.421613 | 2.3:+2297993 | MS.gene76493:CDS |
AAAAGAATTCAGTTCCAGAT+TGG | 0.424118 | 2.3:+2298805 | MS.gene76493:CDS |
TCTCCAGATACAATGATATG+AGG | 0.424444 | 2.3:+2300895 | MS.gene76493:intron |
TCAATACTTCACCAGCTTCT+GGG | 0.439132 | 2.3:-2298782 | None:intergenic |
CGTAGAAAGACTACTGGAAC+TGG | 0.453204 | 2.3:+2305505 | MS.gene76493:CDS |
AAAGAATGCATTGGTTCCTT+GGG | 0.460470 | 2.3:+2301271 | MS.gene76493:CDS |
ACCAACATCAACTTTATCAA+TGG | 0.460731 | 2.3:-2298098 | None:intergenic |
TTTAGATAACTGGAGTGAAA+AGG | 0.467360 | 2.3:+2305477 | MS.gene76493:intron |
CAGTTCCAGTAGTCTTTCTA+CGG | 0.470228 | 2.3:-2305504 | None:intergenic |
CAACCATGGTTGAAGCTTCA+GGG | 0.470871 | 2.3:+2297849 | None:intergenic |
GAGAAATGGTTGTCTCAGTC+AGG | 0.477317 | 2.3:+2298055 | MS.gene76493:CDS |
AGCAGAACTAGATCGCTACT+TGG | 0.487105 | 2.3:+2300673 | MS.gene76493:CDS |
TCCCTATCAACCAGGTGAGC+AGG | 0.488328 | 2.3:+2301459 | MS.gene76493:CDS |
GATTATGATAAATCGTCAAA+GGG | 0.494942 | 2.3:+2301415 | MS.gene76493:CDS |
GAGTCCTTCAAATGGTCATT+CGG | 0.496702 | 2.3:+2301057 | MS.gene76493:CDS |
CCCTGATTTCTTCCCTGAAG+AGG | 0.501319 | 2.3:+2300938 | MS.gene76493:CDS |
ACCTGCTCACCTGGTTGATA+GGG | 0.506098 | 2.3:-2301460 | None:intergenic |
GGATTATGATAAATCGTCAA+AGG | 0.508301 | 2.3:+2301414 | MS.gene76493:CDS |
GAGTGGAGCTGCCCAGAAGC+TGG | 0.508975 | 2.3:+2298771 | MS.gene76493:CDS |
CGATATATAACTGAACCATC+TGG | 0.510053 | 2.3:-2298877 | None:intergenic |
TGAAGCTGCACCTAGGAAGA+AGG | 0.512832 | 2.3:+2305686 | MS.gene76493:CDS |
TGCATTCTTTCCATCCATAG+AGG | 0.513905 | 2.3:-2301258 | None:intergenic |
GTGATGTAATTACCTCTTCA+GGG | 0.518826 | 2.3:-2300950 | None:intergenic |
AATGCCGAATGACCATTTGA+AGG | 0.527488 | 2.3:-2301061 | None:intergenic |
GCAATCCGTAGAAAGACTAC+TGG | 0.532707 | 2.3:+2305499 | MS.gene76493:CDS |
ATCATATGGATTTGTTCCAA+AGG | 0.534845 | 2.3:+2301700 | MS.gene76493:CDS |
TTTATGATTACCTGCTCACC+TGG | 0.538716 | 2.3:-2301469 | None:intergenic |
AGGAATAAGAGTGGTGGTGT+TGG | 0.543116 | 2.3:-2297885 | None:intergenic |
CCTCTTCAGGGAAGAAATCA+GGG | 0.543445 | 2.3:-2300938 | None:intergenic |
GTTCGGTTGCCCTCTATGGA+TGG | 0.550112 | 2.3:+2301248 | MS.gene76493:CDS |
GACGCAGCTCCCTTCTTCCT+AGG | 0.557312 | 2.3:-2305696 | None:intergenic |
AAAGTTGATGTTGGTGAGAG+AGG | 0.560244 | 2.3:+2298106 | MS.gene76493:CDS |
GACAACTCAACTGAATCACT+TGG | 0.561180 | 2.3:-2301734 | None:intergenic |
TCCATTGATAAAGTTGATGT+TGG | 0.569634 | 2.3:+2298097 | MS.gene76493:CDS |
TCAACATCGAGTCCTTCAAA+TGG | 0.570581 | 2.3:+2301049 | MS.gene76493:CDS |
TATGGATTTGTTCCAAAGGA+GGG | 0.574263 | 2.3:+2301704 | MS.gene76493:CDS |
TCAATGGACATCTTCTGAGA+AGG | 0.574688 | 2.3:-2298082 | None:intergenic |
ATAAGGTAAGTTGCAAGCAA+TGG | 0.582668 | 2.3:-2298828 | None:intergenic |
CTCCAGATACAATGATATGA+GGG | 0.583933 | 2.3:+2300896 | MS.gene76493:intron |
GTCTCATGAAATCTTCCAGA+TGG | 0.584762 | 2.3:+2298862 | MS.gene76493:CDS |
ATATGGATTTGTTCCAAAGG+AGG | 0.589672 | 2.3:+2301703 | MS.gene76493:CDS |
GCATTCTTTCCATCCATAGA+GGG | 0.590910 | 2.3:-2301257 | None:intergenic |
CTTCTCCTTATAGGACTCAT+CGG | 0.591036 | 2.3:-2301774 | None:intergenic |
GTTAAAAGTAGGAATAAGAG+TGG | 0.593264 | 2.3:-2297894 | None:intergenic |
TGAAGAAATATGGATTATCA+GGG | 0.595613 | 2.3:+2301807 | MS.gene76493:CDS |
AATAGTTTCCATCAATGATG+AGG | 0.598821 | 2.3:-2297987 | None:intergenic |
GAAGCTGCACCTAGGAAGAA+GGG | 0.598975 | 2.3:+2305687 | MS.gene76493:CDS |
GCTTTGAAGAATATTAGGAA+AGG | 0.605109 | 2.3:+2298136 | MS.gene76493:CDS |
TTAGGGAGAGAGCAATTGAA+AGG | 0.606641 | 2.3:+2300708 | MS.gene76493:CDS |
CATCCCTGAAGCTTCAACCA+TGG | 0.608019 | 2.3:-2297852 | None:intergenic |
TATGGATGGAAAGAATGCAT+TGG | 0.613912 | 2.3:+2301262 | MS.gene76493:CDS |
CTACTGGAACTGGTAGGATG+AGG | 0.613944 | 2.3:+2305515 | MS.gene76493:CDS |
CAGGAACTGAAGCTGCACCT+AGG | 0.634185 | 2.3:+2305679 | MS.gene76493:intron |
TATGATGAATCATAGTTGTG+AGG | 0.641745 | 2.3:+2301298 | MS.gene76493:CDS |
TGATTCATCATATCTGCCCA+AGG | 0.643752 | 2.3:-2301287 | None:intergenic |
GAAAGACTACTGGAACTGGT+AGG | 0.653500 | 2.3:+2305509 | MS.gene76493:CDS |
AGAAGTGAGTATGGTTGACG+AGG | 0.657046 | 2.3:-2298906 | None:intergenic |
GAATCATTCTCACATCCCCA+AGG | 0.662703 | 2.3:-2298010 | None:intergenic |
ACGGATCGTCCCTATCAACC+AGG | 0.664539 | 2.3:+2301451 | MS.gene76493:CDS |
AAAAGTAGGAATAAGAGTGG+TGG | 0.668503 | 2.3:-2297891 | None:intergenic |
TTGATGGAAACTATTCCTTG+GGG | 0.675898 | 2.3:+2297995 | MS.gene76493:CDS |
GTTCCTCGCCGATTCAAGAG+CGG | 0.676604 | 2.3:+2305550 | MS.gene76493:CDS |
AAAGGGAATTGTCTTTACGA+CGG | 0.683033 | 2.3:+2301432 | MS.gene76493:CDS |
AAACCGCTCTTGAATCGGCG+AGG | 0.683649 | 2.3:-2305553 | None:intergenic |
GGAGTGATGACAAGTTCAGG+AGG | 0.684706 | 2.3:-2298178 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 2297854 | 2305725 | 2297854 | ID=MS.gene76493 |
chr2.3 | mRNA | 2297854 | 2305725 | 2297854 | ID=MS.gene76493.t1;Parent=MS.gene76493 |
chr2.3 | exon | 2297854 | 2298207 | 2297854 | ID=MS.gene76493.t1.exon1;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2297854 | 2298207 | 2297854 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2298771 | 2298934 | 2298771 | ID=MS.gene76493.t1.exon2;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2298771 | 2298934 | 2298771 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2300667 | 2300750 | 2300667 | ID=MS.gene76493.t1.exon3;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2300667 | 2300750 | 2300667 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2300902 | 2300959 | 2300902 | ID=MS.gene76493.t1.exon4;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2300902 | 2300959 | 2300902 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2301045 | 2301098 | 2301045 | ID=MS.gene76493.t1.exon5;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2301045 | 2301098 | 2301045 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2301248 | 2301319 | 2301248 | ID=MS.gene76493.t1.exon6;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2301248 | 2301319 | 2301248 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2301400 | 2301480 | 2301400 | ID=MS.gene76493.t1.exon7;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2301400 | 2301480 | 2301400 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2301656 | 2301832 | 2301656 | ID=MS.gene76493.t1.exon8;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2301656 | 2301832 | 2301656 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2302631 | 2302708 | 2302631 | ID=MS.gene76493.t1.exon9;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2302631 | 2302708 | 2302631 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2305031 | 2305052 | 2305031 | ID=MS.gene76493.t1.exon10;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2305031 | 2305052 | 2305031 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2305482 | 2305583 | 2305482 | ID=MS.gene76493.t1.exon11;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2305482 | 2305583 | 2305482 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
chr2.3 | exon | 2305682 | 2305725 | 2305682 | ID=MS.gene76493.t1.exon12;Parent=MS.gene76493.t1 |
chr2.3 | CDS | 2305682 | 2305725 | 2305682 | ID=cds.MS.gene76493.t1;Parent=MS.gene76493.t1 |
Gene Sequence |
Protein sequence |