Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052666.t1 | XP_003630927.1 | 100 | 154 | 0 | 0 | 1 | 154 | 1 | 154 | 3.20E-79 | 304.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052666.t1 | Q08112 | 91.6 | 154 | 11 | 1 | 1 | 154 | 1 | 152 | 2.7e-74 | 279.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052666.t1 | G7LAJ5 | 100.0 | 154 | 0 | 0 | 1 | 154 | 1 | 154 | 2.3e-79 | 304.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene052666 | 0.831248 | 1.86E-55 | -1.69E-46 |
| MS.gene049308 | MS.gene052666 | 0.804605 | 1.99E-49 | -1.69E-46 |
| MS.gene049387 | MS.gene052666 | 0.846914 | 1.61E-59 | -1.69E-46 |
| MS.gene050134 | MS.gene052666 | 0.874202 | 8.12E-68 | -1.69E-46 |
| MS.gene050638 | MS.gene052666 | -0.806321 | 8.71E-50 | -1.69E-46 |
| MS.gene051925 | MS.gene052666 | 0.880461 | 5.39E-70 | -1.69E-46 |
| MS.gene051927 | MS.gene052666 | 0.828158 | 1.05E-54 | -1.69E-46 |
| MS.gene052664 | MS.gene052666 | 0.847044 | 1.48E-59 | -1.69E-46 |
| MS.gene052666 | MS.gene053224 | 0.838947 | 2.12E-57 | -1.69E-46 |
| MS.gene052666 | MS.gene057237 | 0.810432 | 1.16E-50 | -1.69E-46 |
| MS.gene052666 | MS.gene057272 | 0.853864 | 1.80E-61 | -1.69E-46 |
| MS.gene052666 | MS.gene057321 | 0.855535 | 5.91E-62 | -1.69E-46 |
| MS.gene052666 | MS.gene057641 | 0.878295 | 3.15E-69 | -1.69E-46 |
| MS.gene052666 | MS.gene057643 | 0.917128 | 7.74E-86 | -1.69E-46 |
| MS.gene052666 | MS.gene059340 | 0.834922 | 2.26E-56 | -1.69E-46 |
| MS.gene052666 | MS.gene060432 | 0.818176 | 2.25E-52 | -1.69E-46 |
| MS.gene052666 | MS.gene060483 | 0.908694 | 1.29E-81 | -1.69E-46 |
| MS.gene052666 | MS.gene06169 | 0.827099 | 1.89E-54 | -1.69E-46 |
| MS.gene052666 | MS.gene06433 | 0.845356 | 4.27E-59 | -1.69E-46 |
| MS.gene052666 | MS.gene06617 | 0.852909 | 3.39E-61 | -1.69E-46 |
| MS.gene052666 | MS.gene066811 | 0.843802 | 1.12E-58 | -1.69E-46 |
| MS.gene052666 | MS.gene067331 | 0.875713 | 2.48E-68 | -1.69E-46 |
| MS.gene052666 | MS.gene06803 | 0.810641 | 1.04E-50 | -1.69E-46 |
| MS.gene052666 | MS.gene06833 | 0.853715 | 1.99E-61 | -1.69E-46 |
| MS.gene052666 | MS.gene06999 | 0.92854 | 2.50E-92 | -1.69E-46 |
| MS.gene052666 | MS.gene072093 | 0.860647 | 1.78E-63 | -1.69E-46 |
| MS.gene052666 | MS.gene07244 | 0.840987 | 6.24E-58 | -1.69E-46 |
| MS.gene052666 | MS.gene072977 | 0.833351 | 5.61E-56 | -1.69E-46 |
| MS.gene052666 | MS.gene074400 | 0.86496 | 8.35E-65 | -1.69E-46 |
| MS.gene052666 | MS.gene08205 | 0.815083 | 1.11E-51 | -1.69E-46 |
| MS.gene052666 | MS.gene08521 | 0.856589 | 2.90E-62 | -1.69E-46 |
| MS.gene052666 | MS.gene08869 | 0.893015 | 9.31E-75 | -1.69E-46 |
| MS.gene052666 | MS.gene08870 | 0.867678 | 1.15E-65 | -1.69E-46 |
| MS.gene052666 | MS.gene08871 | 0.866197 | 3.40E-65 | -1.69E-46 |
| MS.gene052666 | MS.gene09038 | 0.908278 | 2.04E-81 | -1.69E-46 |
| MS.gene052666 | MS.gene09204 | 0.909664 | 4.43E-82 | -1.69E-46 |
| MS.gene052666 | MS.gene09779 | 0.803151 | 4.00E-49 | -1.69E-46 |
| MS.gene052666 | MS.gene09780 | 0.838136 | 3.44E-57 | -1.69E-46 |
| MS.gene052666 | MS.gene22805 | -0.809287 | 2.04E-50 | -1.69E-46 |
| MS.gene052666 | MS.gene23031 | 0.826464 | 2.67E-54 | -1.69E-46 |
| MS.gene052666 | MS.gene23303 | 0.828521 | 8.58E-55 | -1.69E-46 |
| MS.gene052666 | MS.gene24232 | 0.820796 | 5.68E-53 | -1.69E-46 |
| MS.gene052666 | MS.gene24887 | -0.821326 | 4.29E-53 | -1.69E-46 |
| MS.gene052666 | MS.gene25236 | 0.830048 | 3.66E-55 | -1.69E-46 |
| MS.gene052666 | MS.gene25240 | 0.862379 | 5.28E-64 | -1.69E-46 |
| MS.gene052666 | MS.gene25639 | 0.827941 | 1.18E-54 | -1.69E-46 |
| MS.gene052666 | MS.gene25649 | 0.87331 | 1.62E-67 | -1.69E-46 |
| MS.gene052666 | MS.gene25903 | 0.889872 | 1.64E-73 | -1.69E-46 |
| MS.gene052666 | MS.gene26005 | 0.817991 | 2.47E-52 | -1.69E-46 |
| MS.gene052666 | MS.gene26792 | 0.83865 | 2.54E-57 | -1.69E-46 |
| MS.gene052666 | MS.gene27003 | 0.84481 | 6.00E-59 | -1.69E-46 |
| MS.gene052666 | MS.gene27265 | 0.831999 | 1.21E-55 | -1.69E-46 |
| MS.gene052666 | MS.gene28147 | 0.827177 | 1.81E-54 | -1.69E-46 |
| MS.gene052666 | MS.gene30990 | 0.853829 | 1.85E-61 | -1.69E-46 |
| MS.gene052666 | MS.gene31056 | 0.828119 | 1.07E-54 | -1.69E-46 |
| MS.gene052666 | MS.gene32591 | 0.802045 | 6.76E-49 | -1.69E-46 |
| MS.gene052666 | MS.gene38035 | 0.855535 | 5.91E-62 | -1.69E-46 |
| MS.gene052666 | MS.gene40285 | 0.804298 | 2.31E-49 | -1.69E-46 |
| MS.gene052666 | MS.gene40321 | 0.816248 | 6.10E-52 | -1.69E-46 |
| MS.gene052666 | MS.gene43038 | 0.814881 | 1.23E-51 | -1.69E-46 |
| MS.gene052666 | MS.gene44018 | 0.822912 | 1.84E-53 | -1.69E-46 |
| MS.gene052666 | MS.gene50640 | 0.830732 | 2.49E-55 | -1.69E-46 |
| MS.gene052666 | MS.gene50756 | 0.903837 | 2.30E-79 | -1.69E-46 |
| MS.gene052666 | MS.gene50758 | 0.875436 | 3.09E-68 | -1.69E-46 |
| MS.gene052666 | MS.gene51868 | 0.826681 | 2.37E-54 | -1.69E-46 |
| MS.gene052666 | MS.gene52415 | 0.82654 | 2.57E-54 | -1.69E-46 |
| MS.gene052666 | MS.gene55619 | 0.912929 | 1.11E-83 | -1.69E-46 |
| MS.gene052666 | MS.gene55890 | 0.867903 | 9.71E-66 | -1.69E-46 |
| MS.gene052666 | MS.gene58173 | 0.879469 | 1.22E-69 | -1.69E-46 |
| MS.gene052666 | MS.gene58497 | 0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene052666 | MS.gene59228 | 0.8573 | 1.79E-62 | -1.69E-46 |
| MS.gene052666 | MS.gene59230 | 0.837664 | 4.55E-57 | -1.69E-46 |
| MS.gene052666 | MS.gene60693 | 0.817691 | 2.89E-52 | -1.69E-46 |
| MS.gene052666 | MS.gene62561 | 0.84313 | 1.69E-58 | -1.69E-46 |
| MS.gene052666 | MS.gene62620 | 0.803364 | 3.61E-49 | -1.69E-46 |
| MS.gene052666 | MS.gene62683 | 0.812932 | 3.31E-51 | -1.69E-46 |
| MS.gene052666 | MS.gene62695 | 0.930019 | 3.01E-93 | -1.69E-46 |
| MS.gene052666 | MS.gene69925 | 0.819272 | 1.27E-52 | -1.69E-46 |
| MS.gene052666 | MS.gene70316 | 0.879737 | 9.76E-70 | -1.69E-46 |
| MS.gene052666 | MS.gene70579 | 0.889525 | 2.24E-73 | -1.69E-46 |
| MS.gene052666 | MS.gene71957 | 0.814168 | 1.77E-51 | -1.69E-46 |
| MS.gene052666 | MS.gene76493 | 0.851295 | 9.74E-61 | -1.69E-46 |
| MS.gene052666 | MS.gene79523 | -0.822073 | 2.88E-53 | -1.69E-46 |
| MS.gene052666 | MS.gene79721 | 0.867389 | 1.42E-65 | -1.69E-46 |
| MS.gene052666 | MS.gene80889 | 0.859911 | 2.98E-63 | -1.69E-46 |
| MS.gene052666 | MS.gene82009 | 0.862453 | 5.01E-64 | -1.69E-46 |
| MS.gene052666 | MS.gene88918 | 0.878612 | 2.44E-69 | -1.69E-46 |
| MS.gene052666 | MS.gene91297 | 0.82365 | 1.24E-53 | -1.69E-46 |
| MS.gene052666 | MS.gene92142 | 0.877908 | 4.31E-69 | -1.69E-46 |
| MS.gene052666 | MS.gene94930 | 0.829815 | 4.17E-55 | -1.69E-46 |
| MS.gene052666 | MS.gene95889 | 0.822851 | 1.90E-53 | -1.69E-46 |
| MS.gene052666 | MS.gene96194 | 0.816676 | 4.89E-52 | -1.69E-46 |
| MS.gene052666 | MS.gene96225 | 0.84181 | 3.79E-58 | -1.69E-46 |
| MS.gene052666 | MS.gene96825 | 0.857637 | 1.42E-62 | -1.69E-46 |
| MS.gene052666 | MS.gene98171 | 0.869171 | 3.78E-66 | -1.69E-46 |
| MS.gene052666 | MS.gene98978 | 0.820228 | 7.66E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052666 | MS.gene054292 | PPI |
| MS.gene052666 | MS.gene006122 | PPI |
| MS.gene052666 | MS.gene006123 | PPI |
| MS.gene052666 | MS.gene03522 | PPI |
| MS.gene052666 | MS.gene60717 | PPI |
| MS.gene052666 | MS.gene80490 | PPI |
| MS.gene052666 | MS.gene88892 | PPI |
| MS.gene052666 | MS.gene62695 | PPI |
| MS.gene052666 | MS.gene006126 | PPI |
| MS.gene052666 | MS.gene97614 | PPI |
| MS.gene052666 | MS.gene60716 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052666.t1 | MTR_8g105110 | 100.000 | 154 | 0 | 0 | 1 | 154 | 1 | 154 | 4.92e-111 | 312 |
| MS.gene052666.t1 | MTR_1g070450 | 95.455 | 154 | 5 | 1 | 1 | 154 | 1 | 152 | 4.61e-104 | 294 |
| MS.gene052666.t1 | MTR_4g075450 | 92.857 | 154 | 9 | 1 | 1 | 154 | 1 | 152 | 4.90e-92 | 264 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052666.t1 | AT5G09500 | 87.662 | 154 | 15 | 1 | 1 | 154 | 1 | 150 | 1.07e-93 | 268 |
| MS.gene052666.t1 | AT5G09510 | 91.558 | 154 | 11 | 1 | 1 | 154 | 1 | 152 | 3.57e-92 | 264 |
| MS.gene052666.t1 | AT1G04270 | 91.558 | 154 | 11 | 1 | 1 | 154 | 1 | 152 | 4.12e-92 | 264 |
| MS.gene052666.t1 | AT1G04270 | 90.909 | 154 | 11 | 2 | 1 | 154 | 1 | 151 | 1.39e-89 | 258 |
| MS.gene052666.t1 | AT5G09490 | 81.818 | 154 | 26 | 1 | 1 | 154 | 1 | 152 | 9.71e-89 | 255 |
| MS.gene052666.t1 | AT5G43640 | 85.906 | 149 | 21 | 0 | 6 | 154 | 1 | 149 | 1.10e-82 | 240 |
| MS.gene052666.t1 | AT5G09510 | 94.915 | 118 | 6 | 0 | 37 | 154 | 1 | 118 | 2.08e-71 | 210 |
| MS.gene052666.t1 | AT5G63070 | 62.500 | 160 | 54 | 2 | 1 | 154 | 1 | 160 | 3.08e-64 | 194 |
| MS.gene052666.t1 | AT1G33850 | 83.607 | 61 | 10 | 0 | 12 | 72 | 7 | 67 | 1.12e-19 | 78.2 |
Find 43 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTTCAACTTGGTTAA+AGG | 0.236449 | 4.1:-1815100 | None:intergenic |
| GAGATGATTGGGAGCATTAT+TGG | 0.247005 | 4.1:+1815060 | MS.gene052666:CDS |
| CAGTTTCAGAGGAGTTGATT+TGG | 0.292075 | 4.1:+1813826 | MS.gene052666:CDS |
| CCAGGTCTACCATGCTTAAC+AGG | 0.341486 | 4.1:-1815171 | None:intergenic |
| TCAGTGCTCGTGCTCGTAGA+AGG | 0.367007 | 4.1:+1813891 | MS.gene052666:CDS |
| TTCTTGAATGTTCTCTTCTT+CGG | 0.377124 | 4.1:-1813800 | None:intergenic |
| AGATGGGTCCTAACAGGTTC+GGG | 0.405557 | 4.1:-1815015 | None:intergenic |
| GTGAGAAGCCCGAACCTGTT+AGG | 0.409377 | 4.1:+1815007 | MS.gene052666:CDS |
| GATGCAGCAGCCGCCGCCGC+GGG | 0.422266 | 4.1:+1813773 | MS.gene052666:CDS |
| TTACGAAGATGGGTCCTAAC+AGG | 0.435557 | 4.1:-1815021 | None:intergenic |
| AAGATGGGTCCTAACAGGTT+CGG | 0.450751 | 4.1:-1815016 | None:intergenic |
| CAATGATCATGTTACGAAGA+TGG | 0.465315 | 4.1:-1815032 | None:intergenic |
| ATCATTGTACCTGAGATGAT+TGG | 0.468347 | 4.1:+1815048 | MS.gene052666:CDS |
| TTCAAGAAGTTCAGTTTCAG+AGG | 0.481387 | 4.1:+1813815 | MS.gene052666:CDS |
| AGGTAATGACCGATCATCTC+AGG | 0.492365 | 4.1:-1815123 | None:intergenic |
| CCTGTTAAGCATGGTAGACC+TGG | 0.509940 | 4.1:+1815171 | MS.gene052666:CDS |
| AATGATCATGTTACGAAGAT+GGG | 0.516658 | 4.1:-1815031 | None:intergenic |
| GCATTATTGGAGTGTACAAT+GGG | 0.517140 | 4.1:+1815073 | MS.gene052666:CDS |
| ACAGGTTCGGGCTTCTCACC+AGG | 0.517899 | 4.1:-1815003 | None:intergenic |
| CTTCGGTACTCCCGCGGCGG+CGG | 0.518043 | 4.1:-1813783 | None:intergenic |
| TTGGTGCTACTCACTCCTCC+AGG | 0.521787 | 4.1:+1815196 | MS.gene052666:CDS |
| ATAATGCTCCCAATCATCTC+AGG | 0.528225 | 4.1:-1815057 | None:intergenic |
| TCATTGTACCTGAGATGATT+GGG | 0.539509 | 4.1:+1815049 | MS.gene052666:CDS |
| GCTTACGAGTGAGACCTCTC+TGG | 0.541580 | 4.1:-1813916 | None:intergenic |
| TCTCAGGTTTGATTTCAACT+TGG | 0.546765 | 4.1:-1815107 | None:intergenic |
| AGCATTATTGGAGTGTACAA+TGG | 0.558872 | 4.1:+1815072 | MS.gene052666:CDS |
| TAGAAAAGGGAGGCACCACC+TGG | 0.561975 | 4.1:+1814985 | MS.gene052666:intron |
| TCACTTGAGAGGAATGAACC+TGG | 0.566509 | 4.1:-1815214 | None:intergenic |
| AGATGCAGCAGCCGCCGCCG+CGG | 0.579389 | 4.1:+1813772 | MS.gene052666:CDS |
| GAGTGAGTAGCACCAATACC+AGG | 0.584094 | 4.1:-1815189 | None:intergenic |
| GAAATCAAACCTGAGATGAT+CGG | 0.585387 | 4.1:+1815114 | MS.gene052666:CDS |
| AAGCATGGTAGACCTGGTAT+TGG | 0.586812 | 4.1:+1815177 | MS.gene052666:CDS |
| TCATACAAGCCTGTTAAGCA+TGG | 0.604339 | 4.1:+1815162 | MS.gene052666:CDS |
| GAGCTTAACAAGCTCATCAG+TGG | 0.607114 | 4.1:-1813867 | None:intergenic |
| AGGTCTCACTCGTAAGCCCA+TGG | 0.623580 | 4.1:+1813922 | MS.gene052666:CDS |
| AACAAGGTGATTCACTTGAG+AGG | 0.631770 | 4.1:-1815225 | None:intergenic |
| ATGAGATCGAGAATTCAGCT+AGG | 0.682732 | 4.1:-1815143 | None:intergenic |
| GGTTCGGGCTTCTCACCAGG+TGG | 0.683492 | 4.1:-1815000 | None:intergenic |
| TCTCTTCTTCGGTACTCCCG+CGG | 0.697626 | 4.1:-1813789 | None:intergenic |
| CTTCTTCGGTACTCCCGCGG+CGG | 0.700206 | 4.1:-1813786 | None:intergenic |
| GAATTGGTTGTAGAAAAGGG+AGG | 0.733330 | 4.1:+1814975 | MS.gene052666:intron |
| CTTGAGAGGAATGAACCTGG+AGG | 0.737810 | 4.1:-1815211 | None:intergenic |
| GCTCGTAGAAGGTTCCAGAG+AGG | 0.763484 | 4.1:+1813902 | MS.gene052666:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTACTATTTTACAAATTTA+AGG | - | chr4.1:1814108-1814127 | None:intergenic | 10.0% |
| !!! | AAAAAAAAGTGTTCAATTTA+AGG | - | chr4.1:1814451-1814470 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGTTCAATTTAA+GGG | - | chr4.1:1814450-1814469 | None:intergenic | 15.0% |
| !!! | ATTGTTATAATTTTGTGAAT+TGG | + | chr4.1:1814959-1814978 | MS.gene052666:intron | 15.0% |
| !!! | GAACACTTTTTTTTTTTTTT+TGG | + | chr4.1:1814457-1814476 | MS.gene052666:intron | 15.0% |
| !!! | TTTGTTATTCTTTTATTTAG+TGG | + | chr4.1:1814595-1814614 | MS.gene052666:intron | 15.0% |
| !!! | TTTGTTATTTTGTTAATTTG+AGG | + | chr4.1:1814355-1814374 | MS.gene052666:intron | 15.0% |
| !! | AAGGAACTAAATTGATATAT+TGG | - | chr4.1:1814402-1814421 | None:intergenic | 20.0% |
| !! | ATATGCAAAATACTAACAAT+TGG | + | chr4.1:1814079-1814098 | MS.gene052666:intron | 20.0% |
| !! | ATTCCAAATTCAAATTCAAT+CGG | - | chr4.1:1813726-1813745 | None:intergenic | 20.0% |
| !! | ATTTAGTACTTAAGATAGTA+AGG | - | chr4.1:1814929-1814948 | None:intergenic | 20.0% |
| !! | TATGCAAAATACTAACAATT+GGG | + | chr4.1:1814080-1814099 | MS.gene052666:intron | 20.0% |
| !! | TTACCTATTATGCAAATTTA+AGG | - | chr4.1:1814421-1814440 | None:intergenic | 20.0% |
| !! | TTTAGTACTTAAGATAGTAA+GGG | - | chr4.1:1814928-1814947 | None:intergenic | 20.0% |
| !!! | GAAGTTTTTATTGATTTTGT+TGG | + | chr4.1:1814531-1814550 | MS.gene052666:intron | 20.0% |
| !!! | GTTAGTATTTTGCATATTAA+AGG | - | chr4.1:1814076-1814095 | None:intergenic | 20.0% |
| !!! | TGGTGGTTTTTTAAATTTAA+AGG | + | chr4.1:1814859-1814878 | MS.gene052666:intron | 20.0% |
| !!! | TTGTTAATTTGTGAATTTGA+GGG | + | chr4.1:1814888-1814907 | MS.gene052666:intron | 20.0% |
| !!! | TTTGTTAATTTGTGAATTTG+AGG | + | chr4.1:1814887-1814906 | MS.gene052666:intron | 20.0% |
| ! | AAATCCATGTTAGATTCTAT+CGG | - | chr4.1:1813703-1813722 | None:intergenic | 25.0% |
| ! | AGTAATTGCATACCAAAAAT+TGG | + | chr4.1:1814122-1814141 | MS.gene052666:intron | 25.0% |
| ! | ATTAAAATGGGTACTAAAGT+CGG | - | chr4.1:1814187-1814206 | None:intergenic | 25.0% |
| ! | ATTTAACACTACCATTCTAA+AGG | + | chr4.1:1814722-1814741 | MS.gene052666:intron | 25.0% |
| ! | GAACATGAAACCATTAAAAT+GGG | - | chr4.1:1814199-1814218 | None:intergenic | 25.0% |
| ! | GTTCCTTAAATTTGCATAAT+AGG | + | chr4.1:1814415-1814434 | MS.gene052666:intron | 25.0% |
| ! | TGAACATGAAACCATTAAAA+TGG | - | chr4.1:1814200-1814219 | None:intergenic | 25.0% |
| ! | TTTCCGATTGAATTTGAATT+TGG | + | chr4.1:1813720-1813739 | MS.gene052666:intron | 25.0% |
| !! | AAACAACAATCTTAGCATTT+TGG | + | chr4.1:1814033-1814052 | MS.gene052666:intron | 25.0% |
| !! | AACAACAATCTTAGCATTTT+GGG | + | chr4.1:1814034-1814053 | MS.gene052666:intron | 25.0% |
| !! | AATAGCGATATTTAGGTTAT+AGG | + | chr4.1:1814824-1814843 | MS.gene052666:intron | 25.0% |
| !! | AGGACTAACATCAAAATTTT+TGG | - | chr4.1:1814633-1814652 | None:intergenic | 25.0% |
| !! | ATAGCGATATTTAGGTTATA+GGG | + | chr4.1:1814825-1814844 | MS.gene052666:intron | 25.0% |
| !! | ATATGACATTGTCCAATTTT+TGG | - | chr4.1:1814137-1814156 | None:intergenic | 25.0% |
| !! | CTGAAGATATATTTTCATTG+AGG | + | chr4.1:1814301-1814320 | MS.gene052666:intron | 25.0% |
| !! | GTGCTAATTTGCAAATATAA+AGG | - | chr4.1:1814653-1814672 | None:intergenic | 25.0% |
| !! | TTTGATTTCAACTTGGTTAA+AGG | - | chr4.1:1815103-1815122 | None:intergenic | 25.0% |
| !!! | AATTTGGAATTGAATTTTGC+AGG | + | chr4.1:1813736-1813755 | MS.gene052666:intron | 25.0% |
| !!! | CTCTTGTTGATTATTGATTT+TGG | + | chr4.1:1814269-1814288 | MS.gene052666:intron | 25.0% |
| !!! | GAAATTGATTGCTGTTTTTA+GGG | + | chr4.1:1814327-1814346 | MS.gene052666:intron | 25.0% |
| !!! | TTGTTGATTATTGATTTTGG+TGG | + | chr4.1:1814272-1814291 | MS.gene052666:intron | 25.0% |
| AAGGCATATAACCTTCAAAA+TGG | - | chr4.1:1814496-1814515 | None:intergenic | 30.0% | |
| AATGATCATGTTACGAAGAT+GGG | - | chr4.1:1815034-1815053 | None:intergenic | 30.0% | |
| ATTTCCGATAGAATCTAACA+TGG | + | chr4.1:1813696-1813715 | MS.gene052666:intron | 30.0% | |
| CTTACTGAATAGCGATATTT+AGG | + | chr4.1:1814817-1814836 | MS.gene052666:intron | 30.0% | |
| CTTCCATGTAAACTTGAAAA+AGG | - | chr4.1:1814515-1814534 | None:intergenic | 30.0% | |
| GTTATAGGGACTAAATTGAT+TGG | + | chr4.1:1814839-1814858 | MS.gene052666:intron | 30.0% | |
| TGTGAATTGGTTGTAGAAAA+GGG | + | chr4.1:1814972-1814991 | MS.gene052666:intron | 30.0% | |
| TTCTTGAATGTTCTCTTCTT+CGG | - | chr4.1:1813803-1813822 | None:intergenic | 30.0% | |
| TTGTGAATTGGTTGTAGAAA+AGG | + | chr4.1:1814971-1814990 | MS.gene052666:intron | 30.0% | |
| ! | GACTTTAGTACCCATTTTAA+TGG | + | chr4.1:1814186-1814205 | MS.gene052666:intron | 30.0% |
| !!! | ATGCCTTTTTCAAGTTTACA+TGG | + | chr4.1:1814509-1814528 | MS.gene052666:intron | 30.0% |
| !!! | CGAAATTGATTGCTGTTTTT+AGG | + | chr4.1:1814326-1814345 | MS.gene052666:intron | 30.0% |
| AGCATTATTGGAGTGTACAA+TGG | + | chr4.1:1815072-1815091 | MS.gene052666:CDS | 35.0% | |
| ATAGGGACTAAATTGATTGG+TGG | + | chr4.1:1814842-1814861 | MS.gene052666:intron | 35.0% | |
| ATCATTGTACCTGAGATGAT+TGG | + | chr4.1:1815048-1815067 | MS.gene052666:CDS | 35.0% | |
| ATCGGAAATCAAGTTTCAGA+AGG | - | chr4.1:1813685-1813704 | None:intergenic | 35.0% | |
| CAATGATCATGTTACGAAGA+TGG | - | chr4.1:1815035-1815054 | None:intergenic | 35.0% | |
| GAAATCAAACCTGAGATGAT+CGG | + | chr4.1:1815114-1815133 | MS.gene052666:CDS | 35.0% | |
| GCATATAACCTTCAAAATGG+TGG | - | chr4.1:1814493-1814512 | None:intergenic | 35.0% | |
| GCATTATTGGAGTGTACAAT+GGG | + | chr4.1:1815073-1815092 | MS.gene052666:CDS | 35.0% | |
| GTGACTCAGTGTTCAAATTA+AGG | - | chr4.1:1814683-1814702 | None:intergenic | 35.0% | |
| TCATTGTACCTGAGATGATT+GGG | + | chr4.1:1815049-1815068 | MS.gene052666:CDS | 35.0% | |
| TTCAAGAAGTTCAGTTTCAG+AGG | + | chr4.1:1813815-1813834 | MS.gene052666:CDS | 35.0% | |
| ! | ACGCATGTAAACCTTTAGAA+TGG | - | chr4.1:1814736-1814755 | None:intergenic | 35.0% |
| ! | CAAAGTTACCACCATTTTGA+AGG | + | chr4.1:1814482-1814501 | MS.gene052666:intron | 35.0% |
| ! | TCTCAGGTTTGATTTCAACT+TGG | - | chr4.1:1815110-1815129 | None:intergenic | 35.0% |
| ATAATGCTCCCAATCATCTC+AGG | - | chr4.1:1815060-1815079 | None:intergenic | 40.0% | |
| ATGAGATCGAGAATTCAGCT+AGG | - | chr4.1:1815146-1815165 | None:intergenic | 40.0% | |
| CATCAAAAAGCTTCGCAAAG+CGG | + | chr4.1:1813949-1813968 | MS.gene052666:CDS | 40.0% | |
| GAATTGGTTGTAGAAAAGGG+AGG | + | chr4.1:1814975-1814994 | MS.gene052666:intron | 40.0% | |
| TCATACAAGCCTGTTAAGCA+TGG | + | chr4.1:1815162-1815181 | MS.gene052666:CDS | 40.0% | |
| ! | AAGCTTTTTGATGAGAGCCA+TGG | - | chr4.1:1813942-1813961 | None:intergenic | 40.0% |
| ! | AGCTTTTTGATGAGAGCCAT+GGG | - | chr4.1:1813941-1813960 | None:intergenic | 40.0% |
| ! | CAGTTTCAGAGGAGTTGATT+TGG | + | chr4.1:1813826-1813845 | MS.gene052666:CDS | 40.0% |
| !! | GAGATGATTGGGAGCATTAT+TGG | + | chr4.1:1815060-1815079 | MS.gene052666:CDS | 40.0% |
| AAGATGGGTCCTAACAGGTT+CGG | - | chr4.1:1815019-1815038 | None:intergenic | 45.0% | |
| AAGCATGGTAGACCTGGTAT+TGG | + | chr4.1:1815177-1815196 | MS.gene052666:CDS | 45.0% | |
| AGGTAATGACCGATCATCTC+AGG | - | chr4.1:1815126-1815145 | None:intergenic | 45.0% | |
| GAGCTTAACAAGCTCATCAG+TGG | - | chr4.1:1813870-1813889 | None:intergenic | 45.0% | |
| TCACTTGAGAGGAATGAACC+TGG | - | chr4.1:1815217-1815236 | None:intergenic | 45.0% | |
| TTACGAAGATGGGTCCTAAC+AGG | - | chr4.1:1815024-1815043 | None:intergenic | 45.0% | |
| ! | AATTTTGCAGGCAGACGTTG+AGG | + | chr4.1:1813748-1813767 | MS.gene052666:intron | 45.0% |
| !! | ATAAATAAAAGAAATAAAAA+TGG | - | chr4.1:1813990-1814009 | None:intergenic | 5.0% |
| !! | TAAATAAAAGAAATAAAAAT+GGG | - | chr4.1:1813989-1814008 | None:intergenic | 5.0% |
| AGATGGGTCCTAACAGGTTC+GGG | - | chr4.1:1815018-1815037 | None:intergenic | 50.0% | |
| CCAGGTCTACCATGCTTAAC+AGG | - | chr4.1:1815174-1815193 | None:intergenic | 50.0% | |
| CCTGTTAAGCATGGTAGACC+TGG | + | chr4.1:1815171-1815190 | MS.gene052666:CDS | 50.0% | |
| CTTGAGAGGAATGAACCTGG+AGG | - | chr4.1:1815214-1815233 | None:intergenic | 50.0% | |
| GAGTGAGTAGCACCAATACC+AGG | - | chr4.1:1815192-1815211 | None:intergenic | 50.0% | |
| AGGTCTCACTCGTAAGCCCA+TGG | + | chr4.1:1813922-1813941 | MS.gene052666:CDS | 55.0% | |
| GCTCGTAGAAGGTTCCAGAG+AGG | + | chr4.1:1813902-1813921 | MS.gene052666:CDS | 55.0% | |
| GCTTACGAGTGAGACCTCTC+TGG | - | chr4.1:1813919-1813938 | None:intergenic | 55.0% | |
| GTGAGAAGCCCGAACCTGTT+AGG | + | chr4.1:1815007-1815026 | MS.gene052666:CDS | 55.0% | |
| TCAGTGCTCGTGCTCGTAGA+AGG | + | chr4.1:1813891-1813910 | MS.gene052666:CDS | 55.0% | |
| TCTCTTCTTCGGTACTCCCG+CGG | - | chr4.1:1813792-1813811 | None:intergenic | 55.0% | |
| !! | TAGAAAAGGGAGGCACCACC+TGG | + | chr4.1:1814985-1815004 | MS.gene052666:intron | 55.0% |
| !! | TTGGTGCTACTCACTCCTCC+AGG | + | chr4.1:1815196-1815215 | MS.gene052666:CDS | 55.0% |
| ACAGGTTCGGGCTTCTCACC+AGG | - | chr4.1:1815006-1815025 | None:intergenic | 60.0% | |
| CTTCTTCGGTACTCCCGCGG+CGG | - | chr4.1:1813789-1813808 | None:intergenic | 65.0% | |
| GGTTCGGGCTTCTCACCAGG+TGG | - | chr4.1:1815003-1815022 | None:intergenic | 65.0% | |
| AGATGCAGCAGCCGCCGCCG+CGG | + | chr4.1:1813772-1813791 | MS.gene052666:CDS | 75.0% | |
| CTTCGGTACTCCCGCGGCGG+CGG | - | chr4.1:1813786-1813805 | None:intergenic | 75.0% | |
| ! | GATGCAGCAGCCGCCGCCGC+GGG | + | chr4.1:1813773-1813792 | MS.gene052666:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 1813666 | 1815236 | 1813666 | ID=MS.gene052666 |
| chr4.1 | mRNA | 1813666 | 1815236 | 1813666 | ID=MS.gene052666.t1;Parent=MS.gene052666 |
| chr4.1 | exon | 1813666 | 1813668 | 1813666 | ID=MS.gene052666.t1.exon1;Parent=MS.gene052666.t1 |
| chr4.1 | CDS | 1813666 | 1813668 | 1813666 | ID=cds.MS.gene052666.t1;Parent=MS.gene052666.t1 |
| chr4.1 | exon | 1813758 | 1813970 | 1813758 | ID=MS.gene052666.t1.exon2;Parent=MS.gene052666.t1 |
| chr4.1 | CDS | 1813758 | 1813970 | 1813758 | ID=cds.MS.gene052666.t1;Parent=MS.gene052666.t1 |
| chr4.1 | exon | 1814988 | 1815236 | 1814988 | ID=MS.gene052666.t1.exon3;Parent=MS.gene052666.t1 |
| chr4.1 | CDS | 1814988 | 1815236 | 1814988 | ID=cds.MS.gene052666.t1;Parent=MS.gene052666.t1 |
| Gene Sequence |
| Protein sequence |
