AlfalfaGEDB | MS.gene052666

M. sativa cultivar XinJiangDaYe / MS.gene052666

KEGG: K02958
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0071704 GO:0097159 GO:0110165 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00203.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052666.t1	XP_003630927.1	100	154	0	0	1	154	1	154	3.20E-79	304.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052666.t1	Q08112	91.6	154	11	1	1	154	1	152	2.7e-74	279.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052666.t1	G7LAJ5	100.0	154	0	0	1	154	1	154	2.3e-79	304.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049306	MS.gene052666	0.831248	1.86E-55	-1.69E-46
MS.gene049308	MS.gene052666	0.804605	1.99E-49	-1.69E-46
MS.gene049387	MS.gene052666	0.846914	1.61E-59	-1.69E-46
MS.gene050134	MS.gene052666	0.874202	8.12E-68	-1.69E-46
MS.gene050638	MS.gene052666	-0.806321	8.71E-50	-1.69E-46
MS.gene051925	MS.gene052666	0.880461	5.39E-70	-1.69E-46
MS.gene051927	MS.gene052666	0.828158	1.05E-54	-1.69E-46
MS.gene052664	MS.gene052666	0.847044	1.48E-59	-1.69E-46
MS.gene052666	MS.gene053224	0.838947	2.12E-57	-1.69E-46
MS.gene052666	MS.gene057237	0.810432	1.16E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene052666	MS.gene054292	PPI
MS.gene052666	MS.gene006122	PPI
MS.gene052666	MS.gene006123	PPI
MS.gene052666	MS.gene03522	PPI
MS.gene052666	MS.gene60717	PPI
MS.gene052666	MS.gene80490	PPI
MS.gene052666	MS.gene88892	PPI
MS.gene052666	MS.gene62695	PPI
MS.gene052666	MS.gene006126	PPI
MS.gene052666	MS.gene97614	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052666.t1	MTR_8g105110	100.000	154	0	0	1	154	1	154	4.92e-111	312
MS.gene052666.t1	MTR_1g070450	95.455	154	5	1	1	154	1	152	4.61e-104	294
MS.gene052666.t1	MTR_4g075450	92.857	154	9	1	1	154	1	152	4.90e-92	264

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052666.t1	AT5G09500	87.662	154	15	1	1	154	1	150	1.07e-93	268
MS.gene052666.t1	AT5G09510	91.558	154	11	1	1	154	1	152	3.57e-92	264
MS.gene052666.t1	AT1G04270	91.558	154	11	1	1	154	1	152	4.12e-92	264
MS.gene052666.t1	AT1G04270	90.909	154	11	2	1	154	1	151	1.39e-89	258
MS.gene052666.t1	AT5G09490	81.818	154	26	1	1	154	1	152	9.71e-89	255
MS.gene052666.t1	AT5G43640	85.906	149	21	0	6	154	1	149	1.10e-82	240
MS.gene052666.t1	AT5G09510	94.915	118	6	0	37	154	1	118	2.08e-71	210
MS.gene052666.t1	AT5G63070	62.500	160	54	2	1	154	1	160	3.08e-64	194
MS.gene052666.t1	AT1G33850	83.607	61	10	0	12	72	7	67	1.12e-19	78.2

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Find 43 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGGTGATTCACTTGAG+AGG	0.631770	4.1:-1815225	None:intergenic
AAGATGGGTCCTAACAGGTT+CGG	0.450751	4.1:-1815016	None:intergenic
AAGCATGGTAGACCTGGTAT+TGG	0.586812	4.1:+1815177	MS.gene052666:CDS
AATGATCATGTTACGAAGAT+GGG	0.516658	4.1:-1815031	None:intergenic
ACAGGTTCGGGCTTCTCACC+AGG	0.517899	4.1:-1815003	None:intergenic
AGATGCAGCAGCCGCCGCCG+CGG	0.579389	4.1:+1813772	MS.gene052666:CDS
AGATGGGTCCTAACAGGTTC+GGG	0.405557	4.1:-1815015	None:intergenic
AGCATTATTGGAGTGTACAA+TGG	0.558872	4.1:+1815072	MS.gene052666:CDS
AGGTAATGACCGATCATCTC+AGG	0.492365	4.1:-1815123	None:intergenic
AGGTCTCACTCGTAAGCCCA+TGG	0.623580	4.1:+1813922	MS.gene052666:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGCATATAACCTTCAAAA+TGG	-	chr4.1:1814496-1814515	None:intergenic	30.0%
AATGATCATGTTACGAAGAT+GGG	-	chr4.1:1815034-1815053	None:intergenic	30.0%
ATTTCCGATAGAATCTAACA+TGG	+	chr4.1:1813696-1813715	MS.gene052666:intron	30.0%
CTTACTGAATAGCGATATTT+AGG	+	chr4.1:1814817-1814836	MS.gene052666:intron	30.0%
CTTCCATGTAAACTTGAAAA+AGG	-	chr4.1:1814515-1814534	None:intergenic	30.0%
GTTATAGGGACTAAATTGAT+TGG	+	chr4.1:1814839-1814858	MS.gene052666:intron	30.0%
TGTGAATTGGTTGTAGAAAA+GGG	+	chr4.1:1814972-1814991	MS.gene052666:intron	30.0%
TTCTTGAATGTTCTCTTCTT+CGG	-	chr4.1:1813803-1813822	None:intergenic	30.0%
TTGTGAATTGGTTGTAGAAA+AGG	+	chr4.1:1814971-1814990	MS.gene052666:intron	30.0%
AGCATTATTGGAGTGTACAA+TGG	+	chr4.1:1815072-1815091	MS.gene052666:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	1813666	1815236	1813666	ID=MS.gene052666
chr4.1	mRNA	1813666	1815236	1813666	ID=MS.gene052666.t1;Parent=MS.gene052666
chr4.1	exon	1813666	1813668	1813666	ID=MS.gene052666.t1.exon1;Parent=MS.gene052666.t1
chr4.1	CDS	1813666	1813668	1813666	ID=cds.MS.gene052666.t1;Parent=MS.gene052666.t1
chr4.1	exon	1813758	1813970	1813758	ID=MS.gene052666.t1.exon2;Parent=MS.gene052666.t1
chr4.1	CDS	1813758	1813970	1813758	ID=cds.MS.gene052666.t1;Parent=MS.gene052666.t1
chr4.1	exon	1814988	1815236	1814988	ID=MS.gene052666.t1.exon3;Parent=MS.gene052666.t1
chr4.1	CDS	1814988	1815236	1814988	ID=cds.MS.gene052666.t1;Parent=MS.gene052666.t1

Gene Sequence

>MS.gene052666

ATGGTGAGTTAACAATCCTTCTGAAACTTGATTTCCGATAGAATCTAACATGGATTTCCGATTGAATTTGAATTTGGAATTGAATTTTGCAGGCAGACGTTGAGGTAGATGCAGCAGCCGCCGCCGCGGGAGTACCGAAGAAGAGAACATTCAAGAAGTTCAGTTTCAGAGGAGTTGATTTGGATGCACTTCTTGACATGTCCACTGATGAGCTTGTTAAGCTCTTCAGTGCTCGTGCTCGTAGAAGGTTCCAGAGAGGTCTCACTCGTAAGCCCATGGCTCTCATCAAAAAGCTTCGCAAAGCGGTACAATTTTATTTTCCCATTTTTATTTCTTTTATTTATCTGAAAATTAAATAGTAAAATTAAAACAACAATCTTAGCATTTTGGGCGTGCTCAATTTAGTTCCTTTAATATGCAAAATACTAACAATTGGGTTCCTTAAATTTGTAAAATAGTAATTGCATACCAAAAATTGGACAATGTCATATCAGTCATTAGTATTTTTGTGTTTTTGTCCGACTTTAGTACCCATTTTAATGGTTTCATGTTCATTTTGATGCAATAATTGCTTCTAGAACATATTCAAGTTACTATTCAAGTCTCTTGTTGATTATTGATTTTGGTGGTTTGTTCTGAAGATATATTTTCATTGAGGTGCGAAATTGATTGCTGTTTTTAGGGATTAATTTGTTATTTTGTTAATTTGAGGCATTAAATTGCTCAAACTTTACCAATATATCAATTTAGTTCCTTAAATTTGCATAATAGGTAATTTAGTCCCTTAAATTGAACACTTTTTTTTTTTTTTTGGTGCAAAGTTACCACCATTTTGAAGGTTATATGCCTTTTTCAAGTTTACATGGAAGTTTTTATTGATTTTGTTGGATCTTTACTAAAGTTATATTTTGCTTGAAGAACTTAGTTATTTTGTTATTCTTTTATTTAGTGGTTAATTGAATTTCCAAAAATTTTGATGTTAGTCCTTTATATTTGCAAATTAGCACTTTAGTACCTTAATTTGAACACTGAGTCACTTTTTTTTTTTTGCTTTAAATTTAACACTACCATTCTAAAGGTTTACATGCGTCAAATGCATCAAGAGACTAGTTAAGTTAATATTTAAACAATTTTATTGATTTTGATGAATGCTTACTGAATAGCGATATTTAGGTTATAGGGACTAAATTGATTGGTGGTTTTTTAAATTTAAAGGACTACTTTGTTAATTTGTGAATTTGAGGGACTAAATTACTTGACCCTTACTATCTTAAGTACTAAATGCTGATTCATATTGTTATAATTTTGTGAATTGGTTGTAGAAAAGGGAGGCACCACCTGGTGAGAAGCCCGAACCTGTTAGGACCCATCTTCGTAACATGATCATTGTACCTGAGATGATTGGGAGCATTATTGGAGTGTACAATGGGAAGACCTTTAACCAAGTTGAAATCAAACCTGAGATGATCGGTCATTACCTAGCTGAATTCTCGATCTCATACAAGCCTGTTAAGCATGGTAGACCTGGTATTGGTGCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGA

Protein sequence

>MS.gene052666.t1

MADVEVDAAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK