Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057641.t1 | XP_003606958.1 | 100 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 2.20E-34 | 154.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057641.t1 | Q9SIK2 | 93.8 | 80 | 5 | 0 | 28 | 107 | 29 | 108 | 1.7e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057641.t1 | B7FH10 | 100.0 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 1.6e-34 | 154.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene057641 | 0.800314 | 1.53E-48 | -1.69E-46 |
| MS.gene049387 | MS.gene057641 | 0.805958 | 1.04E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene057641 | 0.874668 | 5.64E-68 | -1.69E-46 |
| MS.gene050638 | MS.gene057641 | -0.801867 | 7.35E-49 | -1.69E-46 |
| MS.gene050791 | MS.gene057641 | 0.842002 | 3.37E-58 | -1.69E-46 |
| MS.gene050912 | MS.gene057641 | 0.849301 | 3.53E-60 | -1.69E-46 |
| MS.gene051904 | MS.gene057641 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene051984 | MS.gene057641 | 0.82012 | 8.11E-53 | -1.69E-46 |
| MS.gene052664 | MS.gene057641 | 0.867336 | 1.47E-65 | -1.69E-46 |
| MS.gene052666 | MS.gene057641 | 0.878295 | 3.15E-69 | -1.69E-46 |
| MS.gene053224 | MS.gene057641 | 0.856922 | 2.32E-62 | -1.69E-46 |
| MS.gene057237 | MS.gene057641 | 0.830262 | 3.24E-55 | -1.69E-46 |
| MS.gene057272 | MS.gene057641 | 0.847164 | 1.38E-59 | -1.69E-46 |
| MS.gene057641 | MS.gene057643 | 0.947987 | 2.30E-106 | -1.69E-46 |
| MS.gene057641 | MS.gene059340 | 0.83901 | 2.05E-57 | -1.69E-46 |
| MS.gene057641 | MS.gene060432 | 0.868919 | 4.56E-66 | -1.69E-46 |
| MS.gene057641 | MS.gene060483 | 0.856736 | 2.63E-62 | -1.69E-46 |
| MS.gene057641 | MS.gene06169 | 0.802599 | 5.20E-49 | -1.69E-46 |
| MS.gene057641 | MS.gene06583 | 0.825181 | 5.39E-54 | -1.69E-46 |
| MS.gene057641 | MS.gene06617 | 0.881231 | 2.85E-70 | -1.69E-46 |
| MS.gene057641 | MS.gene066811 | 0.850263 | 1.90E-60 | -1.69E-46 |
| MS.gene057641 | MS.gene067331 | 0.821943 | 3.09E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene06803 | 0.840986 | 6.25E-58 | -1.69E-46 |
| MS.gene057641 | MS.gene06833 | 0.880748 | 4.25E-70 | -1.69E-46 |
| MS.gene057641 | MS.gene072093 | 0.830412 | 2.98E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene07244 | 0.820913 | 5.34E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene072503 | 0.84724 | 1.31E-59 | -1.69E-46 |
| MS.gene057641 | MS.gene072589 | 0.83657 | 8.66E-57 | -1.69E-46 |
| MS.gene057641 | MS.gene072591 | 0.811395 | 7.15E-51 | -1.69E-46 |
| MS.gene057641 | MS.gene072977 | 0.81169 | 6.17E-51 | -1.69E-46 |
| MS.gene057641 | MS.gene074400 | 0.829473 | 5.05E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene08521 | 0.828846 | 7.16E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene08869 | 0.829122 | 6.14E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene08870 | 0.862335 | 5.45E-64 | -1.69E-46 |
| MS.gene057641 | MS.gene08871 | 0.868307 | 7.19E-66 | -1.69E-46 |
| MS.gene057641 | MS.gene09038 | 0.842233 | 2.93E-58 | -1.69E-46 |
| MS.gene057641 | MS.gene09204 | 0.84889 | 4.59E-60 | -1.69E-46 |
| MS.gene057641 | MS.gene09597 | 0.803312 | 3.70E-49 | -1.69E-46 |
| MS.gene057641 | MS.gene09761 | 0.822272 | 2.59E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene09779 | 0.830967 | 2.18E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene09780 | 0.825273 | 5.13E-54 | -1.69E-46 |
| MS.gene057641 | MS.gene20153 | 0.847301 | 1.26E-59 | -1.69E-46 |
| MS.gene057641 | MS.gene20766 | 0.828836 | 7.20E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene22784 | 0.824286 | 8.77E-54 | -1.69E-46 |
| MS.gene057641 | MS.gene22805 | -0.80403 | 2.63E-49 | -1.69E-46 |
| MS.gene057641 | MS.gene23031 | 0.901781 | 1.89E-78 | -1.69E-46 |
| MS.gene057641 | MS.gene23303 | 0.855374 | 6.59E-62 | -1.69E-46 |
| MS.gene057641 | MS.gene23314 | 0.800982 | 1.12E-48 | -1.69E-46 |
| MS.gene057641 | MS.gene24232 | 0.81899 | 1.47E-52 | -1.69E-46 |
| MS.gene057641 | MS.gene24639 | 0.840829 | 6.87E-58 | -1.69E-46 |
| MS.gene057641 | MS.gene25236 | 0.821617 | 3.67E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene25639 | 0.8214 | 4.12E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene25903 | 0.851296 | 9.73E-61 | -1.69E-46 |
| MS.gene057641 | MS.gene26005 | 0.821899 | 3.16E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene26707 | 0.814143 | 1.79E-51 | -1.69E-46 |
| MS.gene057641 | MS.gene27003 | 0.843476 | 1.37E-58 | -1.69E-46 |
| MS.gene057641 | MS.gene27265 | 0.834674 | 2.62E-56 | -1.69E-46 |
| MS.gene057641 | MS.gene28147 | 0.891013 | 5.85E-74 | -1.69E-46 |
| MS.gene057641 | MS.gene38035 | 0.830185 | 3.39E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene40285 | 0.808454 | 3.07E-50 | -1.69E-46 |
| MS.gene057641 | MS.gene41726 | 0.819683 | 1.02E-52 | -1.69E-46 |
| MS.gene057641 | MS.gene46387 | 0.853491 | 2.31E-61 | -1.69E-46 |
| MS.gene057641 | MS.gene50640 | 0.828446 | 8.95E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene50756 | 0.933818 | 1.05E-95 | -1.69E-46 |
| MS.gene057641 | MS.gene50758 | 0.986928 | 1.86E-168 | -1.69E-46 |
| MS.gene057641 | MS.gene51868 | 0.803324 | 3.68E-49 | -1.69E-46 |
| MS.gene057641 | MS.gene52415 | 0.870247 | 1.69E-66 | -1.69E-46 |
| MS.gene057641 | MS.gene55619 | 0.845856 | 3.13E-59 | -1.69E-46 |
| MS.gene057641 | MS.gene55890 | 0.876722 | 1.11E-68 | -1.69E-46 |
| MS.gene057641 | MS.gene58173 | 0.822885 | 1.86E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene58497 | 0.815099 | 1.10E-51 | -1.69E-46 |
| MS.gene057641 | MS.gene59228 | 0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene59230 | 0.853372 | 2.50E-61 | -1.69E-46 |
| MS.gene057641 | MS.gene59609 | 0.809515 | 1.82E-50 | -1.69E-46 |
| MS.gene057641 | MS.gene60693 | 0.821773 | 3.38E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene62561 | 0.858491 | 7.94E-63 | -1.69E-46 |
| MS.gene057641 | MS.gene62695 | 0.869967 | 2.08E-66 | -1.69E-46 |
| MS.gene057641 | MS.gene62791 | 0.819854 | 9.33E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene70316 | 0.877668 | 5.23E-69 | -1.69E-46 |
| MS.gene057641 | MS.gene70579 | 0.848851 | 4.71E-60 | -1.69E-46 |
| MS.gene057641 | MS.gene72382 | 0.860321 | 2.24E-63 | -1.69E-46 |
| MS.gene057641 | MS.gene73000 | 0.829913 | 3.95E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene73833 | 0.83474 | 2.52E-56 | -1.69E-46 |
| MS.gene057641 | MS.gene74837 | 0.831561 | 1.56E-55 | -1.69E-46 |
| MS.gene057641 | MS.gene76031 | 0.848808 | 4.84E-60 | -1.69E-46 |
| MS.gene057641 | MS.gene76493 | 0.801714 | 7.91E-49 | -1.69E-46 |
| MS.gene057641 | MS.gene79721 | 0.840504 | 8.36E-58 | -1.69E-46 |
| MS.gene057641 | MS.gene82545 | 0.803045 | 4.20E-49 | -1.69E-46 |
| MS.gene057641 | MS.gene88918 | 0.821037 | 4.99E-53 | -1.69E-46 |
| MS.gene057641 | MS.gene95848 | 0.811643 | 6.32E-51 | -1.69E-46 |
| MS.gene057641 | MS.gene96194 | 0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene057641 | MS.gene96225 | 0.872548 | 2.92E-67 | -1.69E-46 |
| MS.gene057641 | MS.gene96825 | 0.840368 | 9.07E-58 | -1.69E-46 |
| MS.gene057641 | MS.gene98171 | 0.844254 | 8.47E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057641.t1 | MTR_4g070600 | 100.000 | 107 | 0 | 0 | 1 | 107 | 1 | 107 | 1.06e-74 | 216 |
| MS.gene057641.t1 | MTR_2g086610 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 2.56e-74 | 215 |
| MS.gene057641.t1 | MTR_4g070600 | 99.065 | 107 | 0 | 1 | 1 | 107 | 1 | 106 | 3.00e-72 | 210 |
| MS.gene057641.t1 | MTR_6g015615 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| MS.gene057641.t1 | MTR_3g117040 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057641.t1 | AT2G21580 | 92.593 | 108 | 7 | 1 | 1 | 107 | 1 | 108 | 6.71e-54 | 164 |
| MS.gene057641.t1 | AT4G39200 | 89.815 | 108 | 10 | 1 | 1 | 107 | 1 | 108 | 2.45e-52 | 160 |
| MS.gene057641.t1 | AT2G21580 | 88.889 | 108 | 10 | 2 | 1 | 107 | 1 | 107 | 3.02e-52 | 159 |
| MS.gene057641.t1 | AT4G39200 | 87.963 | 108 | 11 | 2 | 1 | 107 | 1 | 107 | 1.13e-50 | 155 |
| MS.gene057641.t1 | AT4G34555 | 89.720 | 107 | 10 | 1 | 1 | 106 | 1 | 107 | 3.02e-50 | 154 |
| MS.gene057641.t1 | AT2G16360 | 86.667 | 105 | 13 | 1 | 2 | 105 | 2 | 106 | 1.08e-46 | 145 |
Find 38 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGTCTATGCAGATTAA+TGG | 0.196241 | 4.2:-36431816 | MS.gene057641:intron |
| AGGAGTGATGAGCTTGTATT+TGG | 0.258319 | 4.2:+36433067 | None:intergenic |
| CTGTTTGCCACCGCCAGATT+TGG | 0.259942 | 4.2:+36433984 | None:intergenic |
| GGAGGAGGAGCTGCCTTCTT+GGG | 0.308666 | 4.2:+36434021 | None:intergenic |
| TCCTCCAAGCCAGCCAAATC+TGG | 0.317280 | 4.2:-36433997 | MS.gene057641:CDS |
| ACCGCCAGATTTGGCTGGCT+TGG | 0.348344 | 4.2:+36433993 | None:intergenic |
| AGGAGGAGGAGCTGCCTTCT+TGG | 0.379715 | 4.2:+36434020 | None:intergenic |
| TGATGGCTAAAGGTTTAATC+AGG | 0.382324 | 4.2:-36431764 | MS.gene057641:CDS |
| CTGTCCTCTCTGATCGTTTG+AGG | 0.389732 | 4.2:-36433043 | MS.gene057641:CDS |
| GAGGGCTATAAGAGACTTGA+TGG | 0.404889 | 4.2:-36431781 | MS.gene057641:CDS |
| CACCTAGGTGTTTGTAGCCC+TGG | 0.406263 | 4.2:+36431707 | None:intergenic |
| TTGCCACCGCCAGATTTGGC+TGG | 0.423311 | 4.2:+36433988 | None:intergenic |
| CAACATGGTGCTGTTTGATC+AGG | 0.424061 | 4.2:-36433120 | MS.gene057641:CDS |
| TGTCCTCTCTGATCGTTTGA+GGG | 0.452861 | 4.2:-36433042 | MS.gene057641:intron |
| GCCAGATTTGGCTGGCTTGG+AGG | 0.465517 | 4.2:+36433996 | None:intergenic |
| ATAAGAGACTTGATGGCTAA+AGG | 0.477465 | 4.2:-36431774 | MS.gene057641:CDS |
| GTGGAGCAAGGGAAAGCAAA+AGG | 0.500179 | 4.2:-36433153 | MS.gene057641:CDS |
| GCTGGCTTGGAGGAAGGAGG+AGG | 0.501135 | 4.2:+36434006 | None:intergenic |
| TTCAGTTAAGAGCTTGTCAT+AGG | 0.503535 | 4.2:+36433094 | None:intergenic |
| GGCTAAAGGTTTAATCAGGT+TGG | 0.524410 | 4.2:-36431760 | MS.gene057641:CDS |
| TAATGGATCACTTGCAAGGA+GGG | 0.537201 | 4.2:-36431799 | MS.gene057641:CDS |
| GATTTGGCTGGCTTGGAGGA+AGG | 0.542704 | 4.2:+36434000 | None:intergenic |
| CAAGTCAGCAGATTTACACC+AGG | 0.557612 | 4.2:-36431725 | MS.gene057641:CDS |
| TGTTTAACAGAAGTGGAGCA+AGG | 0.569376 | 4.2:-36433165 | MS.gene057641:intron |
| AAGCCAGCCAAATCTGGCGG+TGG | 0.569616 | 4.2:-36433991 | MS.gene057641:CDS |
| GGAGTGATGAGCTTGTATTT+GGG | 0.571965 | 4.2:+36433068 | None:intergenic |
| AAACGATCAGAGAGGACAGA+AGG | 0.576753 | 4.2:+36433047 | None:intergenic |
| TTGGCTGGCTTGGAGGAAGG+AGG | 0.587842 | 4.2:+36434003 | None:intergenic |
| CGGTGGCAAACAGAAGAAGA+AGG | 0.599544 | 4.2:-36433974 | MS.gene057641:intron |
| GTTTAACAGAAGTGGAGCAA+GGG | 0.616121 | 4.2:-36433164 | MS.gene057641:intron |
| AACATGGTGCTGTTTGATCA+GGG | 0.617310 | 4.2:-36433119 | MS.gene057641:CDS |
| TCCAAGCCAGCCAAATCTGG+CGG | 0.632166 | 4.2:-36433994 | MS.gene057641:CDS |
| AGATTAATGGATCACTTGCA+AGG | 0.633639 | 4.2:-36431803 | MS.gene057641:CDS |
| AAGTCAGCAGATTTACACCA+GGG | 0.688410 | 4.2:-36431724 | MS.gene057641:CDS |
| TTAATGGATCACTTGCAAGG+AGG | 0.700095 | 4.2:-36431800 | MS.gene057641:CDS |
| CACCAGGGCTACAAACACCT+AGG | 0.701247 | 4.2:-36431709 | None:intergenic |
| AAAGGAGAAAGTGAACAACA+TGG | 0.737054 | 4.2:-36433135 | MS.gene057641:CDS |
| TTACCCTCAAACGATCAGAG+AGG | 0.790654 | 4.2:+36433039 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTGATGAATTAAATTT+TGG | + | chr4.2:36433972-36433991 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTAAATTAGCAT+TGG | + | chr4.2:36432573-36432592 | None:intergenic | 10.0% |
| !! | ATAAACAATTAAATCTAAAC+AGG | + | chr4.2:36431989-36432008 | None:intergenic | 15.0% |
| !!! | TTTTGTATAATCTATTTCTA+AGG | + | chr4.2:36432427-36432446 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTTTACCACA+CGG | + | chr4.2:36432477-36432496 | None:intergenic | 20.0% |
| !! | AAACTAGTAATGAAAATCAT+AGG | + | chr4.2:36433125-36433144 | None:intergenic | 20.0% |
| !! | ACTAAATATTTGTGACTAAA+AGG | - | chr4.2:36433933-36433952 | MS.gene057641:intron | 20.0% |
| !! | CTAAATATTTGTGACTAAAA+GGG | - | chr4.2:36433934-36433953 | MS.gene057641:intron | 20.0% |
| !! | TAAGTACAAGAAAAGTTAAA+AGG | + | chr4.2:36431882-36431901 | None:intergenic | 20.0% |
| !!! | AAGATAATAACTGCAATTTT+CGG | + | chr4.2:36433551-36433570 | None:intergenic | 20.0% |
| !!! | AATAATGAATATGTCTTTTG+TGG | - | chr4.2:36433986-36434005 | MS.gene057641:CDS | 20.0% |
| !!! | AATTTAATTTTTGGCCTTTT+TGG | - | chr4.2:36432110-36432129 | MS.gene057641:intron | 20.0% |
| !!! | ACACAAATTTAAGTTGATAA+TGG | - | chr4.2:36433606-36433625 | MS.gene057641:intron | 20.0% |
| !!! | TGATTTGTTAGTGATATTAA+GGG | - | chr4.2:36432621-36432640 | MS.gene057641:intron | 20.0% |
| ! | AAAAAGCTGTTAATCCAAAA+AGG | + | chr4.2:36432127-36432146 | None:intergenic | 25.0% |
| ! | AAATGAACTTAAAATGCACA+AGG | + | chr4.2:36433720-36433739 | None:intergenic | 25.0% |
| ! | AATGACAACGATGAAATTTA+AGG | + | chr4.2:36433657-36433676 | None:intergenic | 25.0% |
| ! | AATGTCATCATAAAGTAAAG+AGG | - | chr4.2:36433631-36433650 | MS.gene057641:intron | 25.0% |
| ! | AGAAGATGAAATGTTAACTA+GGG | - | chr4.2:36433472-36433491 | MS.gene057641:intron | 25.0% |
| ! | ATGTTAAAAGCTTATGTAAG+TGG | + | chr4.2:36432012-36432031 | None:intergenic | 25.0% |
| ! | CTAAATCACAGAACATATAT+TGG | - | chr4.2:36433239-36433258 | MS.gene057641:intron | 25.0% |
| ! | CTTACACCAAATAATACATT+AGG | + | chr4.2:36433795-36433814 | None:intergenic | 25.0% |
| ! | CTTTAGTTGTAAAAATGTTG+TGG | - | chr4.2:36433822-36433841 | MS.gene057641:intron | 25.0% |
| ! | TCTTGAAGATTCTATTGTTT+AGG | - | chr4.2:36433567-36433586 | MS.gene057641:intron | 25.0% |
| !! | GAAAACAACGAATTTTCAAT+CGG | + | chr4.2:36432551-36432570 | None:intergenic | 25.0% |
| !! | TTTACTAATGCCTTTTCTTA+TGG | - | chr4.2:36432807-36432826 | MS.gene057641:intron | 25.0% |
| !!! | AAATTTTTCAGTCCTAGTAT+TGG | - | chr4.2:36433016-36433035 | MS.gene057641:intron | 25.0% |
| !!! | AGTTGTTTTGTAAGCTATAT+TGG | - | chr4.2:36432262-36432281 | MS.gene057641:intron | 25.0% |
| !!! | GTGATTTGTTAGTGATATTA+AGG | - | chr4.2:36432620-36432639 | MS.gene057641:intron | 25.0% |
| !!! | GTTCATTTTTTTGCAATCTT+AGG | - | chr4.2:36433732-36433751 | MS.gene057641:intron | 25.0% |
| !!! | TTTTTTGTGTTTAACAGAAG+TGG | - | chr4.2:36432647-36432666 | MS.gene057641:intron | 25.0% |
| AAACTAATTCCACCAATACT+AGG | + | chr4.2:36433031-36433050 | None:intergenic | 30.0% | |
| AAATCATAGGTTCAATACAG+TGG | + | chr4.2:36433112-36433131 | None:intergenic | 30.0% | |
| AGAACATTAAGGCTAAAAAG+TGG | + | chr4.2:36433154-36433173 | None:intergenic | 30.0% | |
| ATATTAAACAGACCAAAACG+CGG | + | chr4.2:36433179-36433198 | None:intergenic | 30.0% | |
| ATGAATTACAGAGATGAGTA+TGG | + | chr4.2:36431766-36431785 | None:intergenic | 30.0% | |
| CTAGGACTGAAAAATTTAGA+TGG | + | chr4.2:36433013-36433032 | None:intergenic | 30.0% | |
| GAGAAGATGAAATGTTAACT+AGG | - | chr4.2:36433471-36433490 | MS.gene057641:intron | 30.0% | |
| GTTTGGCCTAATGTATTATT+TGG | - | chr4.2:36433786-36433805 | MS.gene057641:intron | 30.0% | |
| TCTAACAAAACTTATGCAAG+TGG | - | chr4.2:36432358-36432377 | MS.gene057641:intron | 30.0% | |
| TTAAGAGATGCTCATTTCTA+GGG | - | chr4.2:36433303-36433322 | MS.gene057641:intron | 30.0% | |
| TTATACCACACCATAAGAAA+AGG | + | chr4.2:36432820-36432839 | None:intergenic | 30.0% | |
| TTTAAGAGATGCTCATTTCT+AGG | - | chr4.2:36433302-36433321 | MS.gene057641:intron | 30.0% | |
| ! | ATGTTTTCACAAAGTAACTG+AGG | + | chr4.2:36433364-36433383 | None:intergenic | 30.0% |
| ! | CTCCTGTGAATGAATTTTAT+GGG | - | chr4.2:36431963-36431982 | MS.gene057641:intron | 30.0% |
| ! | TCTGGACTTGTTTATAAGTT+TGG | - | chr4.2:36433769-36433788 | MS.gene057641:intron | 30.0% |
| !! | TTTCTAGGGCAATATGTATT+TGG | - | chr4.2:36433317-36433336 | MS.gene057641:intron | 30.0% |
| !!! | CTCTGTAATTCATTTTTTGC+AGG | - | chr4.2:36431773-36431792 | MS.gene057641:CDS | 30.0% |
| AAAACGCGGATAGAACATTA+AGG | + | chr4.2:36433165-36433184 | None:intergenic | 35.0% | |
| AAAATGATGAGCATCAGGAT+AGG | + | chr4.2:36432964-36432983 | None:intergenic | 35.0% | |
| AAACATCACTGTAAATGCAG+AGG | + | chr4.2:36433684-36433703 | None:intergenic | 35.0% | |
| AAAGGAGAAAGTGAACAACA+TGG | - | chr4.2:36432684-36432703 | MS.gene057641:intron | 35.0% | |
| CAAAAGATTAAGCGCATGTT+TGG | + | chr4.2:36432404-36432423 | None:intergenic | 35.0% | |
| CTTGAAAAATGATGAGCATC+AGG | + | chr4.2:36432969-36432988 | None:intergenic | 35.0% | |
| GCCATTTAGCACAAAAATTC+TGG | + | chr4.2:36433220-36433239 | None:intergenic | 35.0% | |
| GTATGCGTGCATTATTATGT+TGG | - | chr4.2:36432863-36432882 | MS.gene057641:intron | 35.0% | |
| TGATGGCTAAAGGTTTAATC+AGG | - | chr4.2:36434055-36434074 | MS.gene057641:intron | 35.0% | |
| TTCAGTTAAGAGCTTGTCAT+AGG | + | chr4.2:36432728-36432747 | None:intergenic | 35.0% | |
| TTGTGGTCTATGCAGATTAA+TGG | - | chr4.2:36434003-36434022 | MS.gene057641:CDS | 35.0% | |
| ! | AACTGCAATTTTCGGAAACA+GGG | + | chr4.2:36433543-36433562 | None:intergenic | 35.0% |
| ! | AGATTAATGGATCACTTGCA+AGG | - | chr4.2:36434016-36434035 | MS.gene057641:CDS | 35.0% |
| ! | ATAAGAGACTTGATGGCTAA+AGG | - | chr4.2:36434045-36434064 | MS.gene057641:intron | 35.0% |
| ! | ATTTTCGGAAACAGGGAAAA+TGG | + | chr4.2:36433536-36433555 | None:intergenic | 35.0% |
| ! | CTCTTGTATTGTTGTTCAAG+TGG | - | chr4.2:36433065-36433084 | MS.gene057641:CDS | 35.0% |
| ! | GCCAGAATTTTTGTGCTAAA+TGG | - | chr4.2:36433216-36433235 | MS.gene057641:intron | 35.0% |
| ! | GCTCCTGTGAATGAATTTTA+TGG | - | chr4.2:36431962-36431981 | MS.gene057641:intron | 35.0% |
| ! | GGCTTTTTGAACAATCTCTT+TGG | - | chr4.2:36432522-36432541 | MS.gene057641:intron | 35.0% |
| ! | TAACTGCAATTTTCGGAAAC+AGG | + | chr4.2:36433544-36433563 | None:intergenic | 35.0% |
| ! | TAATGCCTTTTCTTATGGTG+TGG | - | chr4.2:36432812-36432831 | MS.gene057641:intron | 35.0% |
| ! | TTAATGTTCTATCCGCGTTT+TGG | - | chr4.2:36433164-36433183 | MS.gene057641:intron | 35.0% |
| ! | TTTTGGCAAAATGATTGCTC+TGG | - | chr4.2:36432501-36432520 | MS.gene057641:intron | 35.0% |
| !! | TAGGTGTCATTCTAAGTTTC+TGG | - | chr4.2:36433751-36433770 | MS.gene057641:intron | 35.0% |
| !! | TTTTTCAGTCCTAGTATTGG+TGG | - | chr4.2:36433019-36433038 | MS.gene057641:intron | 35.0% |
| AACTTTACCACACGGCATTA+AGG | + | chr4.2:36432469-36432488 | None:intergenic | 40.0% | |
| AAGTCAGCAGATTTACACCA+GGG | - | chr4.2:36434095-36434114 | MS.gene057641:intron | 40.0% | |
| AGGAGTGATGAGCTTGTATT+TGG | + | chr4.2:36432755-36432774 | None:intergenic | 40.0% | |
| CTAGGGCAATATGTATTTGG+AGG | - | chr4.2:36433320-36433339 | MS.gene057641:intron | 40.0% | |
| GGAGTGATGAGCTTGTATTT+GGG | + | chr4.2:36432754-36432773 | None:intergenic | 40.0% | |
| GGCCCATAAAATTCATTCAC+AGG | + | chr4.2:36431968-36431987 | None:intergenic | 40.0% | |
| GGCTAAAGGTTTAATCAGGT+TGG | - | chr4.2:36434059-36434078 | MS.gene057641:intron | 40.0% | |
| GTTTAACAGAAGTGGAGCAA+GGG | - | chr4.2:36432655-36432674 | MS.gene057641:intron | 40.0% | |
| TGTTTAACAGAAGTGGAGCA+AGG | - | chr4.2:36432654-36432673 | MS.gene057641:intron | 40.0% | |
| TTATCTTCCTTAATGCCGTG+TGG | - | chr4.2:36432459-36432478 | MS.gene057641:intron | 40.0% | |
| ! | GGCTCGTATTTTCTGATAAG+TGG | - | chr4.2:36433086-36433105 | MS.gene057641:CDS | 40.0% |
| ! | TAATGGATCACTTGCAAGGA+GGG | - | chr4.2:36434020-36434039 | MS.gene057641:CDS | 40.0% |
| ! | TTAATGGATCACTTGCAAGG+AGG | - | chr4.2:36434019-36434038 | MS.gene057641:CDS | 40.0% |
| !! | AACATGGTGCTGTTTGATCA+GGG | - | chr4.2:36432700-36432719 | MS.gene057641:intron | 40.0% |
| !! | GGAGGTGTTTCTGAGAATAT+AGG | - | chr4.2:36433338-36433357 | MS.gene057641:intron | 40.0% |
| AAACGATCAGAGAGGACAGA+AGG | + | chr4.2:36432775-36432794 | None:intergenic | 45.0% | |
| CAAGTCAGCAGATTTACACC+AGG | - | chr4.2:36434094-36434113 | MS.gene057641:intron | 45.0% | |
| CATCACTGTAAATGCAGAGG+TGG | + | chr4.2:36433681-36433700 | None:intergenic | 45.0% | |
| GAGGGCTATAAGAGACTTGA+TGG | - | chr4.2:36434038-36434057 | MS.gene057641:intron | 45.0% | |
| TCTAGTGTGATGCACACCTT+TGG | - | chr4.2:36433877-36433896 | MS.gene057641:intron | 45.0% | |
| TGTCCTCTCTGATCGTTTGA+GGG | - | chr4.2:36432777-36432796 | MS.gene057641:intron | 45.0% | |
| TTACCCTCAAACGATCAGAG+AGG | + | chr4.2:36432783-36432802 | None:intergenic | 45.0% | |
| ! | GTGAAAGTGCAAGCAACCAA+AGG | + | chr4.2:36433896-36433915 | None:intergenic | 45.0% |
| !! | CAACATGGTGCTGTTTGATC+AGG | - | chr4.2:36432699-36432718 | MS.gene057641:intron | 45.0% |
| !!! | TTTTTTGCAGGCACCCAAGA+AGG | - | chr4.2:36431785-36431804 | MS.gene057641:CDS | 45.0% |
| !!! | AAACAATTAAATTTAATTTT+TGG | - | chr4.2:36432101-36432120 | MS.gene057641:intron | 5.0% |
| !!! | AAGTTTTTTTTTTTTTTTTT+TGG | - | chr4.2:36432484-36432503 | MS.gene057641:intron | 5.0% |
| CGGTGGCAAACAGAAGAAGA+AGG | - | chr4.2:36431845-36431864 | MS.gene057641:intron | 50.0% | |
| CTGTCCTCTCTGATCGTTTG+AGG | - | chr4.2:36432776-36432795 | MS.gene057641:intron | 50.0% | |
| GTGGAGCAAGGGAAAGCAAA+AGG | - | chr4.2:36432666-36432685 | MS.gene057641:intron | 50.0% | |
| CTGTTTGCCACCGCCAGATT+TGG | + | chr4.2:36431838-36431857 | None:intergenic | 55.0% | |
| TCCAAGCCAGCCAAATCTGG+CGG | - | chr4.2:36431825-36431844 | MS.gene057641:intron | 55.0% | |
| TCCTCCAAGCCAGCCAAATC+TGG | - | chr4.2:36431822-36431841 | MS.gene057641:intron | 55.0% | |
| !! | GATTTGGCTGGCTTGGAGGA+AGG | + | chr4.2:36431822-36431841 | None:intergenic | 55.0% |
| AAGCCAGCCAAATCTGGCGG+TGG | - | chr4.2:36431828-36431847 | MS.gene057641:intron | 60.0% | |
| AGGAGGAGGAGCTGCCTTCT+TGG | + | chr4.2:36431802-36431821 | None:intergenic | 60.0% | |
| GGAGGAGGAGCTGCCTTCTT+GGG | + | chr4.2:36431801-36431820 | None:intergenic | 60.0% | |
| TTGCCACCGCCAGATTTGGC+TGG | + | chr4.2:36431834-36431853 | None:intergenic | 60.0% | |
| ! | ACCGCCAGATTTGGCTGGCT+TGG | + | chr4.2:36431829-36431848 | None:intergenic | 60.0% |
| !! | GCCAGATTTGGCTGGCTTGG+AGG | + | chr4.2:36431826-36431845 | None:intergenic | 60.0% |
| !! | TTGGCTGGCTTGGAGGAAGG+AGG | + | chr4.2:36431819-36431838 | None:intergenic | 60.0% |
| !! | GCTGGCTTGGAGGAAGGAGG+AGG | + | chr4.2:36431816-36431835 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 36431710 | 36434131 | 36431710 | ID=MS.gene057641 |
| chr4.2 | mRNA | 36431710 | 36434131 | 36431710 | ID=MS.gene057641.t1;Parent=MS.gene057641 |
| chr4.2 | exon | 36434129 | 36434131 | 36434129 | ID=MS.gene057641.t1.exon1;Parent=MS.gene057641.t1 |
| chr4.2 | CDS | 36434129 | 36434131 | 36434129 | ID=cds.MS.gene057641.t1;Parent=MS.gene057641.t1 |
| chr4.2 | exon | 36433975 | 36434046 | 36433975 | ID=MS.gene057641.t1.exon2;Parent=MS.gene057641.t1 |
| chr4.2 | CDS | 36433975 | 36434046 | 36433975 | ID=cds.MS.gene057641.t1;Parent=MS.gene057641.t1 |
| chr4.2 | exon | 36433043 | 36433177 | 36433043 | ID=MS.gene057641.t1.exon3;Parent=MS.gene057641.t1 |
| chr4.2 | CDS | 36433043 | 36433177 | 36433043 | ID=cds.MS.gene057641.t1;Parent=MS.gene057641.t1 |
| chr4.2 | exon | 36431710 | 36431823 | 36431710 | ID=MS.gene057641.t1.exon4;Parent=MS.gene057641.t1 |
| chr4.2 | CDS | 36431710 | 36431823 | 36431710 | ID=cds.MS.gene057641.t1;Parent=MS.gene057641.t1 |
| Gene Sequence |
| Protein sequence |
