AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76612

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76612.t1 MTR_5g041550 96.887 514 16 0 1 514 1 514 0.0 1019
MS.gene76612.t1 MTR_3g093010 81.102 508 95 1 1 508 1 507 0.0 826
MS.gene76612.t1 MTR_3g007910 76.447 501 85 3 1 501 1 468 0.0 768
MS.gene76612.t1 MTR_3g093060 84.035 451 71 1 50 499 1 451 0.0 764
MS.gene76612.t1 MTR_0009s0370 67.936 499 156 1 13 511 11 505 0.0 728
MS.gene76612.t1 MTR_3g023480 65.854 492 168 0 14 505 12 503 0.0 686
MS.gene76612.t1 MTR_4g091370 69.062 501 154 1 13 513 13 512 0.0 681
MS.gene76612.t1 MTR_4g090600 68.110 508 161 1 6 513 6 512 0.0 660
MS.gene76612.t1 MTR_5g082540 62.275 501 186 2 1 501 1 498 0.0 623
MS.gene76612.t1 MTR_1g038630 61.924 499 186 3 2 500 3 497 0.0 609
MS.gene76612.t1 MTR_3g008160 57.490 494 205 3 11 503 11 500 0.0 577
MS.gene76612.t1 MTR_1g038600 59.118 499 182 4 2 500 3 479 0.0 568
MS.gene76612.t1 MTR_5g006070 54.118 510 218 3 14 509 13 520 0.0 567
MS.gene76612.t1 MTR_0204s0020 54.752 484 213 3 14 497 12 489 0.0 562
MS.gene76612.t1 MTR_5g094760 55.600 500 212 4 1 496 1 494 0.0 561
MS.gene76612.t1 MTR_7g091690 55.556 504 214 4 1 500 1 498 0.0 555
MS.gene76612.t1 MTR_0204s0020 54.132 484 213 4 14 497 12 486 0.0 551
MS.gene76612.t1 MTR_4g116790 51.272 511 243 3 2 512 6 510 0.0 550
MS.gene76612.t1 MTR_1g104750 52.789 502 233 3 1 501 1 499 0.0 543
MS.gene76612.t1 MTR_0204s0040 52.525 495 228 4 2 496 9 496 0.0 542
MS.gene76612.t1 MTR_4g116770 52.419 496 229 4 2 497 205 693 0.0 542
MS.gene76612.t1 MTR_1g104770 52.590 502 235 2 1 501 1 500 0.0 533
MS.gene76612.t1 MTR_1g104780 52.632 513 239 3 1 512 1 510 0.0 530
MS.gene76612.t1 MTR_3g008170 54.582 502 222 4 1 500 1 498 0.0 529
MS.gene76612.t1 MTR_3g074390 50.392 510 241 6 1 503 1 505 0.0 526
MS.gene76612.t1 MTR_3g008160 56.923 455 191 3 50 503 1 451 0.0 522
MS.gene76612.t1 MTR_6g087040 51.751 514 239 5 1 510 1 509 0.0 521
MS.gene76612.t1 MTR_6g088375 51.751 514 239 5 1 510 1 509 0.0 521
MS.gene76612.t1 MTR_5g006070 53.797 474 203 3 50 509 1 472 0.0 520
MS.gene76612.t1 MTR_8g102860 50.499 501 237 6 15 513 18 509 2.94e-178 511
MS.gene76612.t1 MTR_3g074410 48.733 513 254 6 1 509 1 508 3.16e-174 501
MS.gene76612.t1 MTR_3g074270 49.901 507 228 4 1 506 1 482 3.84e-173 497
MS.gene76612.t1 MTR_8g102860 49.785 466 223 6 50 513 1 457 7.14e-162 468
MS.gene76612.t1 MTR_4g116790 50.964 363 175 2 2 364 6 365 2.05e-136 400
MS.gene76612.t1 MTR_3g074380 47.967 369 183 5 1 364 1 365 9.71e-121 359
MS.gene76612.t1 MTR_3g074370 50.314 318 155 3 193 508 22 338 2.83e-110 331
MS.gene76612.t1 MTR_3g074320 50.629 318 154 3 193 508 22 338 4.46e-110 331
MS.gene76612.t1 MTR_3g074340 50.314 318 155 3 193 508 22 338 7.92e-110 330
MS.gene76612.t1 MTR_3g074400 37.961 461 219 11 50 484 1 420 1.29e-88 278
MS.gene76612.t1 MTR_5g096000 74.595 185 26 3 1 185 1 164 1.94e-81 256
MS.gene76612.t1 MTR_5g096000 61.780 191 57 4 330 514 128 308 3.11e-60 201
MS.gene76612.t1 MTR_3g084110 28.454 485 317 10 20 499 25 484 5.51e-60 206
MS.gene76612.t1 MTR_6g088450 28.510 463 296 8 28 480 63 500 1.34e-58 202
MS.gene76612.t1 MTR_4g069500 27.692 520 328 10 13 509 16 510 2.22e-58 202
MS.gene76612.t1 MTR_8g103500 27.879 495 319 10 8 490 3 471 4.51e-58 201
MS.gene76612.t1 MTR_8g077890 30.572 507 305 13 9 493 4 485 2.21e-57 199
MS.gene76612.t1 MTR_4g069500 29.885 435 282 5 94 509 30 460 1.13e-56 196
MS.gene76612.t1 MTR_7g005910 27.163 497 324 10 20 511 30 493 4.82e-56 195
MS.gene76612.t1 MTR_5g075300 28.817 524 327 11 6 508 2 500 1.27e-54 191
MS.gene76612.t1 MTR_3g116240 27.416 507 314 11 13 492 14 493 1.66e-53 189
MS.gene76612.t1 MTR_4g072030 28.489 523 313 14 1 492 1 493 2.29e-53 188
MS.gene76612.t1 MTR_1g116660 27.022 507 331 12 1 495 8 487 9.50e-53 186
MS.gene76612.t1 MTR_7g082270 28.390 472 306 8 16 486 58 498 1.80e-50 180
MS.gene76612.t1 MTR_1g116650 27.629 485 300 11 20 495 75 517 5.62e-50 179
MS.gene76612.t1 MTR_7g446340 26.033 484 319 11 20 493 51 505 3.10e-49 177
MS.gene76612.t1 MTR_6g007340 26.033 484 319 11 20 493 51 505 3.10e-49 177
MS.gene76612.t1 MTR_4g077740 29.375 480 283 12 31 488 53 498 4.22e-49 176
MS.gene76612.t1 MTR_2g013310 25.462 487 316 11 20 492 49 502 3.51e-48 174
MS.gene76612.t1 MTR_6g018790 29.175 473 299 9 17 486 99 538 1.09e-47 174
MS.gene76612.t1 MTR_2g013310 26.683 416 280 7 90 492 26 429 5.89e-47 169
MS.gene76612.t1 MTR_8g077310 28.755 466 299 8 23 486 47 481 1.70e-46 169
MS.gene76612.t1 MTR_7g082270 29.117 419 266 7 16 434 58 445 2.05e-45 166
MS.gene76612.t1 MTR_1g022315 28.676 408 274 7 84 486 89 484 3.16e-45 166
MS.gene76612.t1 MTR_1g038620 51.899 158 59 1 205 362 50 190 4.20e-45 157
MS.gene76612.t1 MTR_0064s0040 54.000 150 55 3 13 162 14 149 1.29e-44 154
MS.gene76612.t1 MTR_3g074330 50.000 160 71 2 1 153 1 158 9.06e-44 153
MS.gene76612.t1 MTR_3g074360 50.000 160 71 2 1 153 1 158 9.06e-44 153
MS.gene76612.t1 MTR_1g022315 28.250 400 264 8 95 486 1 385 9.94e-44 159
MS.gene76612.t1 MTR_8g077310 29.442 394 266 6 95 486 1 384 1.59e-43 159
MS.gene76612.t1 MTR_2g048720 32.143 336 204 7 20 351 23 338 2.83e-43 162
MS.gene76612.t1 MTR_8g077300 28.067 481 302 9 10 486 33 473 2.87e-43 160
MS.gene76612.t1 MTR_3g074310 49.375 160 72 2 1 153 1 158 4.68e-43 151
MS.gene76612.t1 MTR_5g020270 27.766 479 312 9 11 486 37 484 1.28e-42 159
MS.gene76612.t1 MTR_5g019870 27.851 456 297 10 77 508 48 495 1.20e-41 156
MS.gene76612.t1 MTR_2g026160 29.752 363 225 7 20 372 24 366 1.30e-41 157
MS.gene76612.t1 MTR_2g049020 31.195 343 205 8 20 353 23 343 1.46e-41 157
MS.gene76612.t1 MTR_5g020270 28.426 394 270 5 95 486 1 384 9.72e-41 151
MS.gene76612.t1 MTR_7g113970 25.690 471 306 9 21 486 60 491 2.29e-40 152
MS.gene76612.t1 MTR_7g094450 28.019 414 273 8 81 488 77 471 6.88e-40 150
MS.gene76612.t1 MTR_7g113960 26.329 414 284 7 84 495 67 461 3.68e-39 149
MS.gene76612.t1 MTR_4g118610 27.972 429 279 11 65 486 77 482 1.29e-37 144
MS.gene76612.t1 MTR_5g020270 27.083 480 293 11 11 486 37 463 2.48e-36 140
MS.gene76612.t1 MTR_3g080240 27.273 407 269 11 89 486 139 527 2.86e-36 141
MS.gene76612.t1 MTR_7g094110 27.696 408 272 8 84 486 82 471 2.33e-35 138
MS.gene76612.t1 MTR_2g020710 26.536 407 277 11 85 486 1 390 1.22e-34 134
MS.gene76612.t1 MTR_2g020710 26.230 427 289 12 65 486 74 479 1.33e-34 136
MS.gene76612.t1 MTR_5g077580 27.177 379 198 8 20 351 23 370 1.58e-34 137
MS.gene76612.t1 MTR_4g069500 27.554 323 211 5 206 509 3 321 7.14e-34 131
MS.gene76612.t1 MTR_8g077310 28.010 382 239 8 23 402 47 394 2.68e-32 128
MS.gene76612.t1 MTR_2g026140 27.424 361 220 9 18 368 19 347 1.09e-30 125
MS.gene76612.t1 MTR_4g013205 24.272 412 292 6 79 486 73 468 2.74e-30 124
MS.gene76612.t1 MTR_6g087910 24.155 414 296 6 78 487 84 483 1.79e-29 121
MS.gene76612.t1 MTR_4g064820 28.111 434 256 17 23 439 96 490 8.08e-28 116
MS.gene76612.t1 MTR_7g094110 25.428 409 262 8 84 487 82 452 4.62e-27 114
MS.gene76612.t1 MTR_1g114280 42.484 153 68 3 348 500 21 153 1.69e-26 105
MS.gene76612.t1 MTR_4g118610 28.152 341 219 10 84 417 92 413 6.02e-26 110
MS.gene76612.t1 MTR_7g113960 28.676 272 182 5 84 353 67 328 1.00e-25 109
MS.gene76612.t1 MTR_7g113970 25.672 335 216 7 21 353 60 363 3.48e-25 108
MS.gene76612.t1 MTR_2g020710 25.664 339 230 11 84 417 89 410 1.50e-23 103
MS.gene76612.t1 MTR_2g020710 25.740 338 229 11 84 416 89 409 2.14e-23 102
MS.gene76612.t1 MTR_3g116060 36.364 154 96 2 108 260 68 220 5.10e-21 97.4
MS.gene76612.t1 MTR_3g116060 25.403 248 157 5 257 484 472 711 5.94e-15 78.2
MS.gene76612.t1 MTR_2g020710 27.839 273 180 10 84 351 89 349 1.48e-20 94.0
MS.gene76612.t1 MTR_5g024740 28.270 237 147 6 22 256 3 218 3.15e-19 91.7
MS.gene76612.t1 MTR_5g044910 26.471 238 150 6 22 256 3 218 2.22e-18 89.0
MS.gene76612.t1 MTR_8g073100 24.214 318 195 7 22 330 3 283 2.90e-17 85.5
MS.gene76612.t1 MTR_8g073100 28.700 223 140 6 273 484 485 699 3.94e-13 72.4
MS.gene76612.t1 MTR_3g118530 32.353 170 113 2 92 260 54 222 1.16e-16 83.6
MS.gene76612.t1 MTR_3g118530 32.353 170 113 2 92 260 54 222 1.69e-16 82.8
MS.gene76612.t1 MTR_1g093115 55.556 63 27 1 162 223 1 63 7.21e-15 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76612.t1 AT1G11260 69.006 513 157 2 2 514 3 513 0.0 705
MS.gene76612.t1 AT4G21480 69.450 491 147 2 13 503 13 500 0.0 670
MS.gene76612.t1 AT3G19930 64.200 500 176 2 1 500 1 497 0.0 630
MS.gene76612.t1 AT3G19930 64.200 500 176 2 1 500 1 497 0.0 630
MS.gene76612.t1 AT5G23270 60.800 500 194 2 1 499 1 499 0.0 612
MS.gene76612.t1 AT3G19940 60.324 494 188 4 19 512 21 506 0.0 597
MS.gene76612.t1 AT1G50310 59.192 495 193 5 19 512 21 507 0.0 588
MS.gene76612.t1 AT5G26340 54.990 511 224 3 1 510 1 506 0.0 579
MS.gene76612.t1 AT4G02050 52.918 514 232 4 1 510 1 508 0.0 564
MS.gene76612.t1 AT4G02050 52.918 514 232 4 1 510 1 508 0.0 564
MS.gene76612.t1 AT1G34580 51.085 507 237 6 1 501 1 502 3.18e-179 513
MS.gene76612.t1 AT1G77210 48.317 505 252 5 1 501 1 500 1.81e-177 509
MS.gene76612.t1 AT1G77210 48.317 505 252 5 1 501 1 500 1.81e-177 509
MS.gene76612.t1 AT1G07340 51.093 503 238 5 1 501 1 497 1.32e-174 501
MS.gene76612.t1 AT5G26250 50.588 510 242 5 6 514 5 505 4.57e-174 500
MS.gene76612.t1 AT5G61520 52.104 499 226 5 17 510 18 508 4.80e-171 493
MS.gene76612.t1 AT3G05960 49.705 509 245 7 8 514 6 505 4.43e-170 490
MS.gene76612.t1 AT1G34580 50.985 457 214 5 50 501 1 452 9.38e-162 467
MS.gene76612.t1 AT5G61520 51.304 460 214 4 49 503 2 456 1.18e-155 452
MS.gene76612.t1 AT1G50310 59.280 361 139 4 153 512 11 364 2.91e-151 437
MS.gene76612.t1 AT1G77210 48.571 350 175 3 153 501 6 351 3.86e-121 360
MS.gene76612.t1 AT2G16120 29.615 493 302 10 22 493 24 492 8.30e-65 219
MS.gene76612.t1 AT2G16130 28.794 514 314 11 22 514 24 506 1.38e-63 216
MS.gene76612.t1 AT2G18480 29.350 477 285 11 37 490 36 483 1.84e-60 207
MS.gene76612.t1 AT3G18830 29.470 509 307 14 25 510 37 516 2.99e-60 207
MS.gene76612.t1 AT4G36670 28.889 495 300 12 22 492 15 481 2.40e-57 199
MS.gene76612.t1 AT2G43330 28.632 475 310 7 26 495 34 484 1.31e-54 192
MS.gene76612.t1 AT1G75220 29.612 412 274 6 84 491 88 487 1.00e-47 172
MS.gene76612.t1 AT5G16150 28.753 473 301 9 17 486 99 538 4.91e-47 172
MS.gene76612.t1 AT5G16150 28.753 473 301 9 17 486 99 538 4.91e-47 172
MS.gene76612.t1 AT5G16150 28.753 473 301 9 17 486 99 538 4.91e-47 172
MS.gene76612.t1 AT5G59250 30.333 511 303 15 3 488 72 554 2.34e-46 170
MS.gene76612.t1 AT2G20780 25.417 480 321 11 20 491 51 501 1.50e-44 164
MS.gene76612.t1 AT5G17010 28.692 474 294 12 31 488 55 500 9.35e-44 162
MS.gene76612.t1 AT5G17010 28.692 474 294 12 31 488 55 500 9.35e-44 162
MS.gene76612.t1 AT5G17010 28.692 474 294 12 31 488 55 500 9.35e-44 162
MS.gene76612.t1 AT4G16480 31.006 358 217 6 20 367 24 361 2.78e-43 162
MS.gene76612.t1 AT4G16480 31.006 358 217 6 20 367 24 361 2.78e-43 162
MS.gene76612.t1 AT4G16480 31.006 358 217 6 20 367 24 361 2.78e-43 162
MS.gene76612.t1 AT1G08900 28.087 413 268 7 84 488 23 414 3.60e-43 159
MS.gene76612.t1 AT2G20780 26.585 410 286 7 89 491 42 443 4.98e-43 159
MS.gene76612.t1 AT2G35740 31.476 359 212 9 21 367 24 360 5.70e-43 161
MS.gene76612.t1 AT1G08900 28.087 413 268 7 84 488 57 448 6.29e-43 159
MS.gene76612.t1 AT1G08900 28.087 413 268 7 84 488 65 456 7.19e-43 159
MS.gene76612.t1 AT1G08900 28.087 413 268 7 84 488 65 456 7.19e-43 159
MS.gene76612.t1 AT1G19450 29.126 412 276 6 84 491 89 488 7.37e-43 159
MS.gene76612.t1 AT4G04760 27.885 416 280 5 84 494 12 412 9.75e-43 157
MS.gene76612.t1 AT1G08930 27.536 414 271 6 84 489 98 490 1.75e-42 158
MS.gene76612.t1 AT1G08930 27.536 414 271 6 84 489 98 490 1.75e-42 158
MS.gene76612.t1 AT4G04760 27.885 416 280 5 84 494 71 471 3.14e-42 157
MS.gene76612.t1 AT5G27360 25.820 488 316 8 13 494 25 472 3.61e-42 157
MS.gene76612.t1 AT3G05165 29.280 403 268 6 86 486 72 459 6.56e-42 156
MS.gene76612.t1 AT3G05165 29.280 403 268 6 86 486 72 459 6.56e-42 156
MS.gene76612.t1 AT3G05165 29.280 403 268 6 86 486 72 459 6.56e-42 156
MS.gene76612.t1 AT5G27360 25.610 492 320 8 9 494 69 520 1.61e-41 156
MS.gene76612.t1 AT3G03090 28.842 475 290 12 31 487 55 499 9.77e-41 154
MS.gene76612.t1 AT3G05160 28.288 403 272 6 86 486 14 401 1.11e-40 151
MS.gene76612.t1 AT3G05160 28.288 403 272 6 86 486 14 401 1.11e-40 151
MS.gene76612.t1 AT3G05160 28.288 403 272 6 86 486 63 450 1.89e-40 152
MS.gene76612.t1 AT5G27350 27.981 411 268 7 93 494 77 468 1.40e-39 150
MS.gene76612.t1 AT5G18840 26.389 432 300 7 65 493 65 481 1.75e-39 150
MS.gene76612.t1 AT1G30220 29.326 341 214 5 20 353 25 345 1.81e-39 151
MS.gene76612.t1 AT4G04750 27.098 417 273 7 84 490 76 471 3.76e-39 149
MS.gene76612.t1 AT4G04750 27.098 417 273 7 84 490 76 471 3.76e-39 149
MS.gene76612.t1 AT4G04750 27.098 417 273 7 84 490 120 515 4.45e-39 149
MS.gene76612.t1 AT2G48020 26.277 411 280 7 84 489 68 460 6.18e-39 148
MS.gene76612.t1 AT2G48020 26.277 411 280 7 84 489 68 460 6.18e-39 148
MS.gene76612.t1 AT1G08890 26.764 411 272 7 84 486 67 456 1.42e-38 147
MS.gene76612.t1 AT5G27360 27.493 371 244 6 130 494 17 368 1.42e-38 145
MS.gene76612.t1 AT5G27360 27.493 371 244 6 130 494 17 368 1.42e-38 145
MS.gene76612.t1 AT3G05165 28.571 392 263 6 86 475 72 448 1.24e-37 145
MS.gene76612.t1 AT4G04760 27.033 418 278 7 84 494 71 468 7.53e-37 142
MS.gene76612.t1 AT1G54730 26.471 408 277 8 84 486 72 461 1.09e-36 142
MS.gene76612.t1 AT3G05155 24.842 475 319 8 13 486 17 454 1.18e-36 141
MS.gene76612.t1 AT3G05165 29.769 346 226 6 86 429 72 402 1.69e-36 141
MS.gene76612.t1 AT3G05165 29.769 346 226 6 86 429 72 402 1.69e-36 141
MS.gene76612.t1 AT1G08900 27.540 374 242 7 84 449 65 417 8.07e-36 139
MS.gene76612.t1 AT3G05400 27.340 406 276 8 84 486 66 455 3.36e-35 137
MS.gene76612.t1 AT3G20460 25.185 405 286 5 84 486 93 482 3.43e-34 135
MS.gene76612.t1 AT3G05400 29.223 373 244 9 118 486 79 435 3.96e-34 134
MS.gene76612.t1 AT3G05150 27.711 415 270 10 84 489 75 468 1.08e-33 133
MS.gene76612.t1 AT3G05150 27.711 415 270 10 84 489 75 468 1.08e-33 133
MS.gene76612.t1 AT3G05150 27.711 415 270 10 84 489 75 468 1.22e-33 133
MS.gene76612.t1 AT1G05030 27.586 406 271 10 89 487 73 462 1.57e-33 133
MS.gene76612.t1 AT1G05030 27.586 406 271 10 89 487 125 514 1.64e-33 134
MS.gene76612.t1 AT5G27360 24.824 427 263 9 9 423 21 401 6.45e-31 125
MS.gene76612.t1 AT1G08920 25.243 412 277 8 84 486 72 461 8.29e-31 125
MS.gene76612.t1 AT1G54730 25.182 413 255 9 84 486 72 440 1.21e-30 124
MS.gene76612.t1 AT1G08920 25.121 414 282 8 84 486 72 468 1.46e-30 124
MS.gene76612.t1 AT1G54730 25.606 371 253 8 84 449 72 424 2.97e-30 123
MS.gene76612.t1 AT1G79820 25.051 487 316 12 9 486 40 486 1.00e-29 122
MS.gene76612.t1 AT1G79820 25.051 487 316 12 9 486 40 486 1.00e-29 122
MS.gene76612.t1 AT1G67300 25.732 478 309 14 24 494 55 493 2.59e-29 121
MS.gene76612.t1 AT1G67300 25.732 478 309 14 24 494 55 493 2.59e-29 121
MS.gene76612.t1 AT1G67300 25.732 478 310 15 24 494 55 494 2.62e-29 121
MS.gene76612.t1 AT1G67300 25.986 431 273 14 24 448 55 445 3.00e-26 111
MS.gene76612.t1 AT1G67300 25.986 431 273 14 24 448 55 445 3.00e-26 111
MS.gene76612.t1 AT1G67300 26.277 411 258 13 24 428 55 426 1.39e-25 109
MS.gene76612.t1 AT1G67300 26.277 411 258 13 24 428 55 426 1.39e-25 109
MS.gene76612.t1 AT1G08920 24.533 375 252 8 84 449 72 424 4.71e-25 108
MS.gene76612.t1 AT2G48020 27.119 295 197 6 84 373 68 349 9.59e-25 106
MS.gene76612.t1 AT1G54730 25.071 351 240 8 84 429 72 404 1.32e-24 106
MS.gene76612.t1 AT1G54730 25.071 351 240 8 84 429 72 404 1.32e-24 106
MS.gene76612.t1 AT1G54730 24.202 376 231 9 84 449 72 403 2.07e-24 105
MS.gene76612.t1 AT2G48020 28.000 275 180 6 84 353 68 329 6.31e-24 103
MS.gene76612.t1 AT5G17010 25.053 475 250 13 31 488 52 437 1.69e-22 100
MS.gene76612.t1 AT3G51490 31.984 247 145 8 23 267 4 229 3.02e-22 101
MS.gene76612.t1 AT3G51490 26.106 226 148 3 273 487 500 717 3.98e-13 72.4
MS.gene76612.t1 AT3G51490 31.984 247 145 8 23 267 4 229 3.15e-22 100
MS.gene76612.t1 AT1G79820 24.194 434 281 11 9 434 40 433 6.89e-22 99.0
MS.gene76612.t1 AT1G54730 26.740 273 186 6 84 353 72 333 9.44e-22 97.1
MS.gene76612.t1 AT3G51490 34.783 161 103 2 108 267 20 179 1.35e-20 95.9
MS.gene76612.t1 AT3G51490 26.106 226 148 3 273 487 450 667 4.02e-13 72.4
MS.gene76612.t1 AT1G20840 31.343 201 127 4 80 270 33 232 5.91e-20 94.0
MS.gene76612.t1 AT1G20840 31.343 201 127 4 80 270 33 232 5.91e-20 94.0
MS.gene76612.t1 AT1G54730 26.721 247 170 5 84 327 72 310 6.57e-20 91.3
MS.gene76612.t1 AT1G54730 26.721 247 170 5 84 327 72 310 6.57e-20 91.3
MS.gene76612.t1 AT3G05155 23.099 342 229 7 13 353 17 325 8.59e-20 90.9
MS.gene76612.t1 AT1G54730 23.596 356 218 9 84 429 72 383 3.57e-19 90.1
MS.gene76612.t1 AT1G79820 23.045 486 279 11 9 486 40 438 1.94e-18 88.2
MS.gene76612.t1 AT4G35300 33.974 156 101 2 108 262 70 224 1.10e-16 84.0
MS.gene76612.t1 AT4G35300 33.974 156 101 2 108 262 70 224 1.10e-16 84.0
MS.gene76612.t1 AT4G35300 33.974 156 101 2 108 262 70 224 1.10e-16 84.0
MS.gene76612.t1 AT4G35300 33.974 156 101 2 108 262 70 224 1.10e-16 84.0
MS.gene76612.t1 AT4G35300 33.974 156 101 2 108 262 70 224 1.10e-16 84.0
MS.gene76612.t1 AT4G35300 33.974 156 101 2 108 262 70 224 1.10e-16 84.0
MS.gene76612.t1 AT4G35300 33.974 156 101 2 108 262 70 224 1.10e-16 84.0
MS.gene76612.t1 AT4G35300 34.416 154 99 2 108 260 70 222 1.16e-16 83.6
MS.gene76612.t1 AT4G35300 34.416 154 99 2 108 260 70 222 1.16e-16 83.6
MS.gene76612.t1 AT4G35300 34.416 154 99 2 108 260 70 222 1.16e-16 83.6

Find 117 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGCCACAGTTGATAAATT+TGG 0.190699 5.1:-31289557 MS.gene76612:CDS
GCTGCTCTTGTCGCTTCTAT+TGG 0.213632 5.1:-31291066 MS.gene76612:CDS
AAGAGCTCCTCTATACTTAT+AGG 0.241543 5.1:+31290084 None:intergenic
AGGCGTATCACCATGCTTTC+TGG 0.263685 5.1:-31291015 MS.gene76612:CDS
AACTCTTGATCATTGGGTTT+GGG 0.266386 5.1:+31288962 None:intergenic
CTGCTCTTGTCGCTTCTATT+GGG 0.266514 5.1:-31291065 MS.gene76612:CDS
GTTTGTGTTATTGCTGCTTT+TGG 0.275171 5.1:-31291464 MS.gene76612:CDS
ATTGCTATTGCGATTAAGTT+TGG 0.282410 5.1:-31289370 MS.gene76612:CDS
CTTGCTGGTGCTGCCATGAA+TGG 0.297735 5.1:-31290979 MS.gene76612:CDS
TGAAGGATGGCGTTATAGTT+TGG 0.298754 5.1:-31289978 MS.gene76612:CDS
AGCAGGATTTGCATGGTCTT+GGG 0.300869 5.1:-31289275 MS.gene76612:CDS
ATGCTTTGTCACATGAAGTT+TGG 0.308189 5.1:-31289130 MS.gene76612:CDS
TAACTCTTGATCATTGGGTT+TGG 0.312116 5.1:+31288961 None:intergenic
TATGGGAGAAGCATCCTTAT+TGG 0.327378 5.1:-31289006 MS.gene76612:CDS
TGTCATCACAACAACGAAAA+AGG 0.327801 5.1:+31289090 None:intergenic
AAACCCAATGATCAAGAGTT+AGG 0.328447 5.1:-31288959 MS.gene76612:CDS
TTGGGGTCCTCTTGGTTGGT+TGG 0.331516 5.1:-31289257 MS.gene76612:CDS
CTCATGTCAGCCTTGATTAC+CGG 0.332870 5.1:-31289611 MS.gene76612:CDS
TAGCAGGATTTGCATGGTCT+TGG 0.335920 5.1:-31289276 MS.gene76612:CDS
ACGGTTGACATTTCTTCAAT+TGG 0.344585 5.1:+31289028 None:intergenic
CTTCCCTAACTCTTGATCAT+TGG 0.345507 5.1:+31288955 None:intergenic
TATTCAAATGTTAATTTGTC+AGG 0.346446 5.1:-31289507 MS.gene76612:intron
GCCACCTCAGAAACATAAAT+TGG 0.351695 5.1:+31290109 None:intergenic
GAAGGATGGCGTTATAGTTT+GGG 0.356280 5.1:-31289977 MS.gene76612:CDS
TTCTTGAGCAAAGCCATTCA+TGG 0.356519 5.1:+31290966 None:intergenic
GGCTATGATCTTGGCATCTC+AGG 0.365171 5.1:-31291428 MS.gene76612:intron
ATCAAAGAACTTGGCGTGTC+AGG 0.366550 5.1:+31289905 None:intergenic
TTCCCTAACTCTTGATCATT+GGG 0.367763 5.1:+31288956 None:intergenic
ACCATCGGCACCAATGGGTC+TGG 0.372155 5.1:-31291527 MS.gene76612:CDS
CGGTATCGGATGTGCTAATC+AGG 0.372541 5.1:-31290905 MS.gene76612:intron
ATGGCTTTGCTCAAGAAGTT+TGG 0.375078 5.1:-31290960 MS.gene76612:CDS
TCAGAATGATAAAGCCAAAA+AGG 0.375574 5.1:-31289873 MS.gene76612:CDS
ATTGTTGGTCGTATGTTACT+TGG 0.384615 5.1:-31290931 MS.gene76612:CDS
AAACACATAGTTGAGAATAT+TGG 0.385390 5.1:+31290018 None:intergenic
ATTGGAACTCCCTTCGTCTC+TGG 0.388960 5.1:+31289046 None:intergenic
TTAACAAAATCACTCCAATA+AGG 0.391911 5.1:+31288992 None:intergenic
TGATGAGGAGTTTCAAGATT+TGG 0.393292 5.1:-31289819 MS.gene76612:CDS
GGCTGTCGAATTTGCAGTAC+TGG 0.396012 5.1:+31291124 None:intergenic
GGTCGTATGTTACTTGGATT+CGG 0.398369 5.1:-31290925 MS.gene76612:CDS
CCAATAGTCTTGAACAAAAC+AGG 0.398751 5.1:+31289653 None:intergenic
CCTATGATAATCATTATTGC+AGG 0.405603 5.1:+31289941 None:intergenic
ATGGCGTTATAGTTTGGGTT+TGG 0.409873 5.1:-31289972 MS.gene76612:CDS
GCATGGTCTTGGGGTCCTCT+TGG 0.410090 5.1:-31289265 MS.gene76612:CDS
TGTAGGTGGAGTTACATCTA+TGG 0.413919 5.1:-31291214 MS.gene76612:intron
GAAGATTTGAGCAATGATAA+AGG 0.415896 5.1:+31289159 None:intergenic
TCTTAACATGATGTTCCAAT+TGG 0.429830 5.1:-31290065 MS.gene76612:CDS
GGTCTTGGGGTCCTCTTGGT+TGG 0.430760 5.1:-31289261 MS.gene76612:CDS
GTTGTCGGATGGTCTTATAT+TGG 0.430883 5.1:+31291146 None:intergenic
GCGATTAAGTTTGGAGTAAG+TGG 0.442886 5.1:-31289361 MS.gene76612:CDS
AGAGCTCCTCTATACTTATA+GGG 0.442967 5.1:+31290085 None:intergenic
CCTGCAATAATGATTATCAT+AGG 0.450592 5.1:-31289941 MS.gene76612:CDS
CCATTCTTTCAGCAATTCAC+TGG 0.455820 5.1:-31289701 MS.gene76612:CDS
CTTTCCACATGTCTATGAAA+AGG 0.465576 5.1:-31291172 MS.gene76612:CDS
TTCCAATTGGCAATCACAAT+AGG 0.469218 5.1:-31290052 MS.gene76612:CDS
ACGACAATTGCATACCACTT+TGG 0.475986 5.1:+31289322 None:intergenic
TGCATTTGTGTGTACGTAGC+AGG 0.477703 5.1:-31289292 MS.gene76612:CDS
GGTGGTACCATCGGCACCAA+TGG 0.478985 5.1:-31291533 MS.gene76612:CDS
GAAGTTTGGATGCTCATTGT+TGG 0.482511 5.1:-31290946 MS.gene76612:CDS
TGCCTATTGTGATTGCCAAT+TGG 0.485265 5.1:+31290050 None:intergenic
ACGTGAATAATGTTAACGTT+TGG 0.487606 5.1:+31291103 None:intergenic
TTTGGAGTAAGTGGTGATCC+AGG 0.489412 5.1:-31289352 MS.gene76612:CDS
CCCAGACCCATTGGTGCCGA+TGG 0.495368 5.1:+31291526 None:intergenic
TACCACTTTGGCAAAACACC+TGG 0.496801 5.1:+31289334 None:intergenic
CCATCGGCACCAATGGGTCT+GGG 0.498323 5.1:-31291526 MS.gene76612:CDS
ATGTTACTTGGATTCGGTAT+CGG 0.498538 5.1:-31290919 MS.gene76612:CDS
TTGAAGAAATGTCAACCGTA+TGG 0.507805 5.1:-31289024 MS.gene76612:CDS
CCACGCTCTATCAAAGAACT+TGG 0.508948 5.1:+31289896 None:intergenic
AACCCAATGATCAAGAGTTA+GGG 0.513526 5.1:-31288958 MS.gene76612:CDS
ACACAAACGAAGACGACTCT+AGG 0.515002 5.1:+31291479 None:intergenic
GGCGAGTGCGTTACATCCTC+CGG 0.515090 5.1:+31289592 None:intergenic
CCAGTGAATTGCTGAAAGAA+TGG 0.517212 5.1:+31289701 None:intergenic
TGCTCTTGTCGCTTCTATTG+GGG 0.519153 5.1:-31291064 MS.gene76612:CDS
GTGGTACCATCGGCACCAAT+GGG 0.522342 5.1:-31291532 MS.gene76612:CDS
GGCTAACTCGAGTGCTTGGA+AGG 0.525316 5.1:-31291035 MS.gene76612:CDS
TCGTGGCTAACTCGAGTGCT+TGG 0.528192 5.1:-31291039 MS.gene76612:CDS
TGAGTTACGATCACAATGGC+AGG 0.535455 5.1:-31291554 None:intergenic
GTTACATCCTCCGGTAATCA+AGG 0.540963 5.1:+31289601 None:intergenic
ATGGTGAGATGAGGTCTATA+CGG 0.540991 5.1:+31289737 None:intergenic
TGAAGAAATGTCAACCGTAT+GGG 0.541053 5.1:-31289023 MS.gene76612:CDS
ATAATCTTTCCCAGACCCAT+TGG 0.542067 5.1:+31291517 None:intergenic
GAATTTGCAGTACTGGTTGT+CGG 0.544078 5.1:+31291131 None:intergenic
GTGGCTCCCTATAAGTATAG+AGG 0.545753 5.1:-31290091 MS.gene76612:CDS
TTGCAGTACTGGTTGTCGGA+TGG 0.553020 5.1:+31291135 None:intergenic
AATCACAATAGGCATCTTTG+TGG 0.559517 5.1:-31290041 MS.gene76612:CDS
CATCAACATCGGTTGTTCCA+CGG 0.565370 5.1:+31289837 None:intergenic
GCCAATTTATGTTTCTGAGG+TGG 0.566533 5.1:-31290110 MS.gene76612:CDS
ATAAGGATGCTTCTCCCATA+CGG 0.568142 5.1:+31289009 None:intergenic
TCTTCCAAATTTATCAACTG+TGG 0.570919 5.1:+31289553 None:intergenic
GATAATCATTATTGCAGGGA+CGG 0.571516 5.1:+31289946 None:intergenic
GCAGGATTTGCATGGTCTTG+GGG 0.571706 5.1:-31289274 MS.gene76612:CDS
AAGAACACCTCCAGAAAGCA+TGG 0.593343 5.1:+31291005 None:intergenic
GCTGCAGAGCGAACTTCAAG+TGG 0.599279 5.1:+31289217 None:intergenic
ATTCACGTCCTCTTTGTACG+TGG 0.600495 5.1:-31291088 MS.gene76612:CDS
ACAATGGCAGGTGGTACCAT+CGG 0.610355 5.1:-31291542 MS.gene76612:CDS
AAGAGCAGCCACGTACAAAG+AGG 0.611334 5.1:+31291080 None:intergenic
CCAAGTTCTTTGATAGAGCG+TGG 0.611587 5.1:-31289896 MS.gene76612:CDS
TGGAACAACCGATGTTGATG+AGG 0.613871 5.1:-31289834 MS.gene76612:CDS
GGGTCTGGGAAAGATTATCC+CGG 0.617549 5.1:-31291512 MS.gene76612:CDS
TCAAGTGGGAATATTTCACT+AGG 0.619880 5.1:+31289232 None:intergenic
TGTGCCAATTTATGTTTCTG+AGG 0.629041 5.1:-31290113 MS.gene76612:CDS
TTGAAACTCCTCATCAACAT+CGG 0.632528 5.1:+31289826 None:intergenic
AAGGAATTGATAAGTATCCG+TGG 0.632528 5.1:-31289854 MS.gene76612:CDS
TCCACATGTCTATGAAAAGG+AGG 0.633586 5.1:-31291169 MS.gene76612:CDS
GAATGGAATGAATATTGCCA+TGG 0.636172 5.1:+31289718 None:intergenic
CTATGATAATCATTATTGCA+GGG 0.642807 5.1:+31289942 None:intergenic
ATGTCAGCCTTGATTACCGG+AGG 0.646997 5.1:-31289608 MS.gene76612:CDS
CTCGTCAACAAAGAGGCCCA+AGG 0.648925 5.1:+31289761 None:intergenic
TGTACGTAGCAGGATTTGCA+TGG 0.650558 5.1:-31289282 MS.gene76612:CDS
TCGCTTCTATTGGGGCGTCG+TGG 0.658489 5.1:-31291056 MS.gene76612:CDS
CGTATCACCATGCTTTCTGG+AGG 0.663842 5.1:-31291012 MS.gene76612:CDS
ATACGGTCTCGTCAACAAAG+AGG 0.669713 5.1:+31289754 None:intergenic
CTGCAGAGCGAACTTCAAGT+GGG 0.674256 5.1:+31289218 None:intergenic
AATATTGCCATGGTGAGATG+AGG 0.696056 5.1:+31289728 None:intergenic
TGTGGCGATTGAAACGAGAG+TGG 0.699255 5.1:+31289571 None:intergenic
CTAGGAACCAACCAACCAAG+AGG 0.699881 5.1:+31289250 None:intergenic
GTTACGATCACAATGGCAGG+TGG 0.717162 5.1:-31291551 None:intergenic
GTATAGACCTCATCTCACCA+TGG 0.746534 5.1:-31289735 MS.gene76612:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATATAAAATGAGATA+TGG - chr5.1:31290132-31290151 MS.gene76612:intron 10.0%
!!! TATTTAAATTATTTTGTATC+CGG + chr5.1:31289688-31289707 None:intergenic 10.0%
!! TATATTAAATCTGATCAATT+CGG + chr5.1:31290174-31290193 None:intergenic 15.0%
!!! ATTTAGTTTAATCTATCTTA+GGG + chr5.1:31290229-31290248 None:intergenic 15.0%
!!! GTTTTAAAAGAATATATCTA+TGG - chr5.1:31289833-31289852 MS.gene76612:CDS 15.0%
!!! TATTTAGTTTAATCTATCTT+AGG + chr5.1:31290230-31290249 None:intergenic 15.0%
!!! TATTTTTTTCTCAATATACA+TGG - chr5.1:31290305-31290324 MS.gene76612:intron 15.0%
!! AACAATCAAAAAGCAATATA+TGG + chr5.1:31289616-31289635 None:intergenic 20.0%
!!! GGAAAGAATTTTTGTAAAAA+TGG + chr5.1:31289302-31289321 None:intergenic 20.0%
!!! GTGTTTTCTAAAATGAAAAA+CGG - chr5.1:31290487-31290506 MS.gene76612:intron 20.0%
!!! TATATTTTGATTATTTTGGG+TGG - chr5.1:31290081-31290100 MS.gene76612:CDS 20.0%
!!! TATTCAAATGTTAATTTGTC+AGG - chr5.1:31290981-31291000 MS.gene76612:CDS 20.0%
!!! TTTTTTAGTCTCTTTTTTTC+CGG - chr5.1:31289666-31289685 MS.gene76612:CDS 20.0%
! AAACACATAGTTGAGAATAT+TGG + chr5.1:31290473-31290492 None:intergenic 25.0%
! AAGAATTACAAAATCAACGT+TGG - chr5.1:31290028-31290047 MS.gene76612:CDS 25.0%
! AATTAGATTAAAGTAGGCAA+AGG - chr5.1:31289878-31289897 MS.gene76612:CDS 25.0%
! ATCACGAATTAGATTAAAGT+AGG - chr5.1:31289872-31289891 MS.gene76612:CDS 25.0%
! CTATGATAATCATTATTGCA+GGG + chr5.1:31290549-31290568 None:intergenic 25.0%
! CTTAGATACTTAGATTAGTA+TGG - chr5.1:31290250-31290269 MS.gene76612:intron 25.0%
! TAGTGATATTTCAAAAACTG+TGG - chr5.1:31290699-31290718 MS.gene76612:intron 25.0%
! TTAACAAAATCACTCCAATA+AGG + chr5.1:31291499-31291518 None:intergenic 25.0%
!! GATACTTATCAATTCCTTTT+TGG + chr5.1:31290632-31290651 None:intergenic 25.0%
!!! AAATATTCAGTTTCTAGTGA+CGG + chr5.1:31289201-31289220 None:intergenic 25.0%
!!! TTAATTTTTGGCTATGATCT+TGG - chr5.1:31289051-31289070 MS.gene76612:CDS 25.0%
ACGTGAATAATGTTAACGTT+TGG + chr5.1:31289388-31289407 None:intergenic 30.0%
CATCATATATGTATGTGTGT+AGG - chr5.1:31289257-31289276 MS.gene76612:CDS 30.0%
CCTATGATAATCATTATTGC+AGG + chr5.1:31290550-31290569 None:intergenic 30.0%
CCTGCAATAATGATTATCAT+AGG - chr5.1:31290547-31290566 MS.gene76612:intron 30.0%
GAAGATTTGAGCAATGATAA+AGG + chr5.1:31291332-31291351 None:intergenic 30.0%
TAGTTTAATCTATCTTAGGG+CGG + chr5.1:31290226-31290245 None:intergenic 30.0%
TCAGAATGATAAAGCCAAAA+AGG - chr5.1:31290615-31290634 MS.gene76612:intron 30.0%
TCCTAAATCGATCACTAAAT+TGG - chr5.1:31289140-31289159 MS.gene76612:CDS 30.0%
TCTCAATATACATGGTAACA+TGG - chr5.1:31290313-31290332 MS.gene76612:intron 30.0%
TCTTAACATGATGTTCCAAT+TGG - chr5.1:31290423-31290442 MS.gene76612:intron 30.0%
TCTTCCAAATTTATCAACTG+TGG + chr5.1:31290938-31290957 None:intergenic 30.0%
! ACCAATTTAGTGATCGATTT+AGG + chr5.1:31289144-31289163 None:intergenic 30.0%
! AGAAGAACACTTTTCATACA+AGG - chr5.1:31290955-31290974 MS.gene76612:CDS 30.0%
! ATTGCTATTGCGATTAAGTT+TGG - chr5.1:31291118-31291137 MS.gene76612:CDS 30.0%
! TCTAAAATGAAAAACGGTGA+AGG - chr5.1:31290493-31290512 MS.gene76612:intron 30.0%
!! GATAACTTTTGATTGCTACT+GGG - chr5.1:31289811-31289830 MS.gene76612:CDS 30.0%
!! GCTTTTGGAGGTTTAATTTT+TGG - chr5.1:31289039-31289058 MS.gene76612:CDS 30.0%
AAAAACTGTGGAACATCCTT+GGG - chr5.1:31290711-31290730 MS.gene76612:intron 35.0%
AAACCCAATGATCAAGAGTT+AGG - chr5.1:31291529-31291548 MS.gene76612:CDS 35.0%
AAATGAAAAACGGTGAAGGA+TGG - chr5.1:31290497-31290516 MS.gene76612:intron 35.0%
AACCCAATGATCAAGAGTTA+GGG - chr5.1:31291530-31291549 MS.gene76612:CDS 35.0%
AACTCTTGATCATTGGGTTT+GGG + chr5.1:31291529-31291548 None:intergenic 35.0%
AAGAGCTCCTCTATACTTAT+AGG + chr5.1:31290407-31290426 None:intergenic 35.0%
AAGGAATTGATAAGTATCCG+TGG - chr5.1:31290634-31290653 MS.gene76612:intron 35.0%
AATCACAATAGGCATCTTTG+TGG - chr5.1:31290447-31290466 MS.gene76612:intron 35.0%
ACGGTTGACATTTCTTCAAT+TGG + chr5.1:31291463-31291482 None:intergenic 35.0%
AGAGCTCCTCTATACTTATA+GGG + chr5.1:31290406-31290425 None:intergenic 35.0%
AGTTTAATCTATCTTAGGGC+GGG + chr5.1:31290225-31290244 None:intergenic 35.0%
ATGCTTTGTCACATGAAGTT+TGG - chr5.1:31291358-31291377 MS.gene76612:intron 35.0%
ATTGTTGGTCGTATGTTACT+TGG - chr5.1:31289557-31289576 MS.gene76612:CDS 35.0%
CATATATGTATGTGTGTAGG+TGG - chr5.1:31289260-31289279 MS.gene76612:CDS 35.0%
CTTTCCACATGTCTATGAAA+AGG - chr5.1:31289316-31289335 MS.gene76612:CDS 35.0%
GAATGGAATGAATATTGCCA+TGG + chr5.1:31290773-31290792 None:intergenic 35.0%
GATAATCATTATTGCAGGGA+CGG + chr5.1:31290545-31290564 None:intergenic 35.0%
GGGTGGAGTATAAAAACTTT+CGG - chr5.1:31290098-31290117 MS.gene76612:CDS 35.0%
TAACTCTTGATCATTGGGTT+TGG + chr5.1:31291530-31291549 None:intergenic 35.0%
TCAAGTGGGAATATTTCACT+AGG + chr5.1:31291259-31291278 None:intergenic 35.0%
TGAAGAAATGTCAACCGTAT+GGG - chr5.1:31291465-31291484 MS.gene76612:CDS 35.0%
TGATGAGGAGTTTCAAGATT+TGG - chr5.1:31290669-31290688 MS.gene76612:intron 35.0%
TGTCATCACAACAACGAAAA+AGG + chr5.1:31291401-31291420 None:intergenic 35.0%
TTCCAATTGGCAATCACAAT+AGG - chr5.1:31290436-31290455 MS.gene76612:intron 35.0%
TTCCCTAACTCTTGATCATT+GGG + chr5.1:31291535-31291554 None:intergenic 35.0%
TTGAAACTCCTCATCAACAT+CGG + chr5.1:31290665-31290684 None:intergenic 35.0%
TTGAAGAAATGTCAACCGTA+TGG - chr5.1:31291464-31291483 MS.gene76612:CDS 35.0%
! AGAACACTTTTCATACAAGG+CGG - chr5.1:31290958-31290977 MS.gene76612:CDS 35.0%
! ATGTTACTTGGATTCGGTAT+CGG - chr5.1:31289569-31289588 MS.gene76612:CDS 35.0%
! CCAATAGTCTTGAACAAAAC+AGG + chr5.1:31290838-31290857 None:intergenic 35.0%
! TGTGCCAATTTATGTTTCTG+AGG - chr5.1:31290375-31290394 MS.gene76612:intron 35.0%
!! ATCGCCACAGTTGATAAATT+TGG - chr5.1:31290931-31290950 MS.gene76612:CDS 35.0%
!! CCTGTTTTGTTCAAGACTAT+TGG - chr5.1:31290835-31290854 MS.gene76612:intron 35.0%
!! CGATAACTTTTGATTGCTAC+TGG - chr5.1:31289810-31289829 MS.gene76612:CDS 35.0%
!! GTATGTGAATGAGAGTGTTT+GGG - chr5.1:31290000-31290019 MS.gene76612:CDS 35.0%
!! TGTATGTGAATGAGAGTGTT+TGG - chr5.1:31289999-31290018 MS.gene76612:CDS 35.0%
!!! GTTTGTGTTATTGCTGCTTT+TGG - chr5.1:31289024-31289043 MS.gene76612:CDS 35.0%
AATATTGCCATGGTGAGATG+AGG + chr5.1:31290763-31290782 None:intergenic 40.0%
ACGACAATTGCATACCACTT+TGG + chr5.1:31291169-31291188 None:intergenic 40.0%
ATAAGGATGCTTCTCCCATA+CGG + chr5.1:31291482-31291501 None:intergenic 40.0%
ATAATCTTTCCCAGACCCAT+TGG + chr5.1:31288974-31288993 None:intergenic 40.0%
ATGGTGAGATGAGGTCTATA+CGG + chr5.1:31290754-31290773 None:intergenic 40.0%
CAAAAACTGTGGAACATCCT+TGG - chr5.1:31290710-31290729 MS.gene76612:intron 40.0%
CCAGTGAATTGCTGAAAGAA+TGG + chr5.1:31290790-31290809 None:intergenic 40.0%
CCATTCTTTCAGCAATTCAC+TGG - chr5.1:31290787-31290806 MS.gene76612:intron 40.0%
CGGGAGATACTAAGTTATAG+TGG + chr5.1:31290206-31290225 None:intergenic 40.0%
CTTCCCTAACTCTTGATCAT+TGG + chr5.1:31291536-31291555 None:intergenic 40.0%
GAAGGATGGCGTTATAGTTT+GGG - chr5.1:31290511-31290530 MS.gene76612:intron 40.0%
GAAGTTTGGATGCTCATTGT+TGG - chr5.1:31289542-31289561 MS.gene76612:CDS 40.0%
GCCACCTCAGAAACATAAAT+TGG + chr5.1:31290382-31290401 None:intergenic 40.0%
TCCACATGTCTATGAAAAGG+AGG - chr5.1:31289319-31289338 MS.gene76612:CDS 40.0%
TGAAGGATGGCGTTATAGTT+TGG - chr5.1:31290510-31290529 MS.gene76612:intron 40.0%
TGCCTATTGTGATTGCCAAT+TGG + chr5.1:31290441-31290460 None:intergenic 40.0%
TGTAGGTGGAGTTACATCTA+TGG - chr5.1:31289274-31289293 MS.gene76612:CDS 40.0%
TTCTTGAGCAAAGCCATTCA+TGG + chr5.1:31289525-31289544 None:intergenic 40.0%
! AAGTTTTTGCCAGAGACGAA+GGG - chr5.1:31291433-31291452 MS.gene76612:CDS 40.0%
! ATGGCGTTATAGTTTGGGTT+TGG - chr5.1:31290516-31290535 MS.gene76612:intron 40.0%
! ATGGCTTTGCTCAAGAAGTT+TGG - chr5.1:31289528-31289547 MS.gene76612:CDS 40.0%
! GCCAATTTATGTTTCTGAGG+TGG - chr5.1:31290378-31290397 MS.gene76612:intron 40.0%
! GCGATTAAGTTTGGAGTAAG+TGG - chr5.1:31291127-31291146 MS.gene76612:CDS 40.0%
! GGTCGTATGTTACTTGGATT+CGG - chr5.1:31289563-31289582 MS.gene76612:CDS 40.0%
!! GAATTTGCAGTACTGGTTGT+CGG + chr5.1:31289360-31289379 None:intergenic 40.0%
!! GTTGTCGGATGGTCTTATAT+TGG + chr5.1:31289345-31289364 None:intergenic 40.0%
!! TATGGGAGAAGCATCCTTAT+TGG - chr5.1:31291482-31291501 MS.gene76612:CDS 40.0%
!!! TGTGTTATTGCTGCTTTTGG+AGG - chr5.1:31289027-31289046 MS.gene76612:CDS 40.0%
AAGAACACCTCCAGAAAGCA+TGG + chr5.1:31289486-31289505 None:intergenic 45.0%
ACACAAACGAAGACGACTCT+AGG + chr5.1:31289012-31289031 None:intergenic 45.0%
AGCAGGATTTGCATGGTCTT+GGG - chr5.1:31291213-31291232 MS.gene76612:intron 45.0%
ATACGGTCTCGTCAACAAAG+AGG + chr5.1:31290737-31290756 None:intergenic 45.0%
ATCAAAGAACTTGGCGTGTC+AGG + chr5.1:31290586-31290605 None:intergenic 45.0%
ATTCACGTCCTCTTTGTACG+TGG - chr5.1:31289400-31289419 MS.gene76612:intron 45.0%
CCAAGTTCTTTGATAGAGCG+TGG - chr5.1:31290592-31290611 MS.gene76612:intron 45.0%
CCACGCTCTATCAAAGAACT+TGG + chr5.1:31290595-31290614 None:intergenic 45.0%
CTCATGTCAGCCTTGATTAC+CGG - chr5.1:31290877-31290896 MS.gene76612:intron 45.0%
GTATAGACCTCATCTCACCA+TGG - chr5.1:31290753-31290772 MS.gene76612:intron 45.0%
GTGGCTCCCTATAAGTATAG+AGG - chr5.1:31290397-31290416 MS.gene76612:intron 45.0%
GTTACATCCTCCGGTAATCA+AGG + chr5.1:31290890-31290909 None:intergenic 45.0%
TACCACTTTGGCAAAACACC+TGG + chr5.1:31291157-31291176 None:intergenic 45.0%
TAGCAGGATTTGCATGGTCT+TGG - chr5.1:31291212-31291231 MS.gene76612:CDS 45.0%
TGCATTTGTGTGTACGTAGC+AGG - chr5.1:31291196-31291215 MS.gene76612:CDS 45.0%
TGGAACAACCGATGTTGATG+AGG - chr5.1:31290654-31290673 MS.gene76612:intron 45.0%
TGTACGTAGCAGGATTTGCA+TGG - chr5.1:31291206-31291225 MS.gene76612:CDS 45.0%
! ATCCAGGTGTTTTGCCAAAG+TGG - chr5.1:31291152-31291171 MS.gene76612:CDS 45.0%
! CAAGTTTTTGCCAGAGACGA+AGG - chr5.1:31291432-31291451 MS.gene76612:CDS 45.0%
! CATCAACATCGGTTGTTCCA+CGG + chr5.1:31290654-31290673 None:intergenic 45.0%
! CTGCTCTTGTCGCTTCTATT+GGG - chr5.1:31289423-31289442 MS.gene76612:intron 45.0%
! GCCTCCTTTTCATAGACATG+TGG + chr5.1:31289323-31289342 None:intergenic 45.0%
! TGCTCTTGTCGCTTCTATTG+GGG - chr5.1:31289424-31289443 MS.gene76612:intron 45.0%
! TTTGGAGTAAGTGGTGATCC+AGG - chr5.1:31291136-31291155 MS.gene76612:CDS 45.0%
!! ACTCTAGGAGTGAGTTTTCC+GGG + chr5.1:31288997-31289016 None:intergenic 45.0%
!! GACTCTAGGAGTGAGTTTTC+CGG + chr5.1:31288998-31289017 None:intergenic 45.0%
!!! GGAGGTGTTCTTTTTCTTGC+TGG - chr5.1:31289494-31289513 MS.gene76612:intron 45.0%
!!! AATTATATTTTGATTATTTT+GGG - chr5.1:31290078-31290097 MS.gene76612:CDS 5.0%
!!! TAATTATATTTTGATTATTT+TGG - chr5.1:31290077-31290096 MS.gene76612:CDS 5.0%
AAGAGCAGCCACGTACAAAG+AGG + chr5.1:31289411-31289430 None:intergenic 50.0%
AGGCGTATCACCATGCTTTC+TGG - chr5.1:31289473-31289492 MS.gene76612:intron 50.0%
ATGTCAGCCTTGATTACCGG+AGG - chr5.1:31290880-31290899 MS.gene76612:intron 50.0%
ATTGGAACTCCCTTCGTCTC+TGG + chr5.1:31291445-31291464 None:intergenic 50.0%
CGTATCACCATGCTTTCTGG+AGG - chr5.1:31289476-31289495 MS.gene76612:intron 50.0%
CTAGGAACCAACCAACCAAG+AGG + chr5.1:31291241-31291260 None:intergenic 50.0%
CTGCAGAGCGAACTTCAAGT+GGG + chr5.1:31291273-31291292 None:intergenic 50.0%
GGCTATGATCTTGGCATCTC+AGG - chr5.1:31289060-31289079 MS.gene76612:CDS 50.0%
GGCTGTCGAATTTGCAGTAC+TGG + chr5.1:31289367-31289386 None:intergenic 50.0%
GGGTCTGGGAAAGATTATCC+CGG - chr5.1:31288976-31288995 MS.gene76612:CDS 50.0%
TGTGGCGATTGAAACGAGAG+TGG + chr5.1:31290920-31290939 None:intergenic 50.0%
! CGGTATCGGATGTGCTAATC+AGG - chr5.1:31289583-31289602 MS.gene76612:CDS 50.0%
! GCAGGATTTGCATGGTCTTG+GGG - chr5.1:31291214-31291233 MS.gene76612:intron 50.0%
! GCTGCTCTTGTCGCTTCTAT+TGG - chr5.1:31289422-31289441 MS.gene76612:intron 50.0%
!! TTGCAGTACTGGTTGTCGGA+TGG + chr5.1:31289356-31289375 None:intergenic 50.0%
CTCGTCAACAAAGAGGCCCA+AGG + chr5.1:31290730-31290749 None:intergenic 55.0%
GCTGCAGAGCGAACTTCAAG+TGG + chr5.1:31291274-31291293 None:intergenic 55.0%
GGCTAACTCGAGTGCTTGGA+AGG - chr5.1:31289453-31289472 MS.gene76612:intron 55.0%
GTGGTACCATCGGCACCAAT+GGG - chr5.1:31288956-31288975 MS.gene76612:CDS 55.0%
TCGTGGCTAACTCGAGTGCT+TGG - chr5.1:31289449-31289468 MS.gene76612:intron 55.0%
TTGGGGTCCTCTTGGTTGGT+TGG - chr5.1:31291231-31291250 MS.gene76612:intron 55.0%
!! CTTGCTGGTGCTGCCATGAA+TGG - chr5.1:31289509-31289528 MS.gene76612:CDS 55.0%
ACCATCGGCACCAATGGGTC+TGG - chr5.1:31288961-31288980 MS.gene76612:CDS 60.0%
CCATCGGCACCAATGGGTCT+GGG - chr5.1:31288962-31288981 MS.gene76612:CDS 60.0%
GGCGAGTGCGTTACATCCTC+CGG + chr5.1:31290899-31290918 None:intergenic 60.0%
GGTCTTGGGGTCCTCTTGGT+TGG - chr5.1:31291227-31291246 MS.gene76612:intron 60.0%
GGTGGTACCATCGGCACCAA+TGG - chr5.1:31288955-31288974 MS.gene76612:CDS 60.0%
! GCATGGTCTTGGGGTCCTCT+TGG - chr5.1:31291223-31291242 MS.gene76612:intron 60.0%
!! TCGCTTCTATTGGGGCGTCG+TGG - chr5.1:31289432-31289451 MS.gene76612:intron 60.0%
!! CCCAGACCCATTGGTGCCGA+TGG + chr5.1:31288965-31288984 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 31288949 31291561 31288949 ID=MS.gene76612
chr5.1 mRNA 31288949 31291561 31288949 ID=MS.gene76612.t1;Parent=MS.gene76612
chr5.1 exon 31291429 31291561 31291429 ID=MS.gene76612.t1.exon1;Parent=MS.gene76612.t1
chr5.1 CDS 31291429 31291561 31291429 ID=cds.MS.gene76612.t1;Parent=MS.gene76612.t1
chr5.1 exon 31290906 31291231 31290906 ID=MS.gene76612.t1.exon2;Parent=MS.gene76612.t1
chr5.1 CDS 31290906 31291231 31290906 ID=cds.MS.gene76612.t1;Parent=MS.gene76612.t1
chr5.1 exon 31289508 31290137 31289508 ID=MS.gene76612.t1.exon3;Parent=MS.gene76612.t1
chr5.1 CDS 31289508 31290137 31289508 ID=cds.MS.gene76612.t1;Parent=MS.gene76612.t1
chr5.1 exon 31288949 31289404 31288949 ID=MS.gene76612.t1.exon4;Parent=MS.gene76612.t1
chr5.1 CDS 31288949 31289404 31288949 ID=cds.MS.gene76612.t1;Parent=MS.gene76612.t1
Gene Sequence

>MS.gene76612

ATGGCAGGTGGTACCATCGGCACCAATGGGTCTGGGAAAGATTATCCCGGAAAACTCACTCCTAGAGTCGTCTTCGTTTGTGTTATTGCTGCTTTTGGAGGTTTAATTTTTGGCTATGATCTTGGCATCTCAGGTATACACGTTAATTCTCTATTCAAATTTTCTCTTTGCGCGTTTTTATTTATATATGTTCCTAAATCGATCACTAAATTGGTCACTATGATGATTGAAATAATTCAATAGCTAAATCCGTCACTAGAAACTGAATATTTACTAGTTATGTGTACGTATTATTGTTTATTAATCAACATCATATATGTATGTGTGTAGGTGGAGTTACATCTATGGATCCATTTTTACAAAAATTCTTTCCACATGTCTATGAAAAGGAGGCCAATATAAGACCATCCGACAACCAGTACTGCAAATTCGACAGCCAAACGTTAACATTATTCACGTCCTCTTTGTACGTGGCTGCTCTTGTCGCTTCTATTGGGGCGTCGTGGCTAACTCGAGTGCTTGGAAGGCGTATCACCATGCTTTCTGGAGGTGTTCTTTTTCTTGCTGGTGCTGCCATGAATGGCTTTGCTCAAGAAGTTTGGATGCTCATTGTTGGTCGTATGTTACTTGGATTCGGTATCGGATGTGCTAATCAGGTAACTTACCATATATTGCTTTTTGATTGTTATTTTATTTAAATTCGTTCTGTTTATCAGCTTTTTTAGTCTCTTTTTTTCCGGATACAAAATAATTTAAATAAATCTTAAAATTAAACGAAAAAAACACTCTAAAAAATTATATATGTTTATAAATGTATCGAAGAAAAATAGTTATATATGCTTAAGATTTATATAGATGTATCGATAACTTTTGATTGCTACTGGGTTTTAAAAGAATATATCTATGGTCATTAATATTGATTTATCACGAATTAGATTAAAGTAGGCAAAGGTTATACACATCTCAAGTGATGTTTTGACTTTGCTCTTAATTTTATTCACTTCTAGTATACTAATATTAAATTTTATTCACTTAGTATACAAATATTAATGTATGTGAATGAGAGTGTTTGGGAATATAAGAATTACAAAATCAACGTTGGTAAAATAAAATTAAACTTATCATATTTAATTATATTTTGATTATTTTGGGTGGAGTATAAAAACTTTCGGCAAATCTGAACTAAATATATAAAATGAGATATGGACTAATCATTTTATTACCGAATTGATCAGATTTAATATATAGTATCTTCCACTATAACTTAGTATCTCCCGCCCTAAGATAGATTAAACTAAATACTTAGATACTTAGATTAGTATGGATTAAATGTAGCTAATGAATTGTTTTATGTAATATTTTTTTCTCAATATACATGGTAACATGGATCACAATTAATAGAACATTATTTTTTTATTTGACAGAGTGTGCCAATTTATGTTTCTGAGGTGGCTCCCTATAAGTATAGAGGAGCTCTTAACATGATGTTCCAATTGGCAATCACAATAGGCATCTTTGTGGCCAATATTCTCAACTATGTGTTTTCTAAAATGAAAAACGGTGAAGGATGGCGTTATAGTTTGGGTTTGGCTGCCGTCCCTGCAATAATGATTATCATAGGTGCAATCTTTCTTCCTGACACGCCAAGTTCTTTGATAGAGCGTGGTCAGAATGATAAAGCCAAAAAGGAATTGATAAGTATCCGTGGAACAACCGATGTTGATGAGGAGTTTCAAGATTTGGTTGCAGCTAGTGATATTTCAAAAACTGTGGAACATCCTTGGGCCTCTTTGTTGACGAGACCGTATAGACCTCATCTCACCATGGCAATATTCATTCCATTCTTTCAGCAATTCACTGGCATGAATGTGATTACATTCTATGCTCCTGTTTTGTTCAAGACTATTGGATTTAGCAGCGATGCTTCTCTCATGTCAGCCTTGATTACCGGAGGATGTAACGCACTCGCCACTCTCGTTTCAATCGCCACAGTTGATAAATTTGGAAGAAGAACACTTTTCATACAAGGCGGTATTCAAATGTTAATTTGTCAGGTTTGTGAAATAAACTTTTTTTATATAAAAAAAAGCATACATAATCTATGCTAAATTTTGAAGTTGATTATTTTTATTAATTAAATTTAAATTTTGTTTGCAGATTGTTATAGCTATTGCTATTGCGATTAAGTTTGGAGTAAGTGGTGATCCAGGTGTTTTGCCAAAGTGGTATGCAATTGTCGTTGTTATGTGCATTTGTGTGTACGTAGCAGGATTTGCATGGTCTTGGGGTCCTCTTGGTTGGTTGGTTCCTAGTGAAATATTCCCACTTGAAGTTCGCTCTGCAGCTCAAAGTATCAATGTCTCTGTTAACATGATTTTCACCTTTATCATTGCTCAAATCTTCACTACAATGCTTTGTCACATGAAGTTTGGATTATTTATCTTCTTCGCCTTTTTCGTTGTTGTGATGACAACATTTATTTACAAGTTTTTGCCAGAGACGAAGGGAGTTCCAATTGAAGAAATGTCAACCGTATGGGAGAAGCATCCTTATTGGAGTGATTTTGTTAAAGCGAAACCCAAACCCAATGATCAAGAGTTAGGGAAGCGTTAG
Protein sequence

>MS.gene76612.t1

MAGGTIGTNGSGKDYPGKLTPRVVFVCVIAAFGGLIFGYDLGISGGVTSMDPFLQKFFPHVYEKEANIRPSDNQYCKFDSQTLTLFTSSLYVAALVASIGASWLTRVLGRRITMLSGGVLFLAGAAMNGFAQEVWMLIVGRMLLGFGIGCANQSVPIYVSEVAPYKYRGALNMMFQLAITIGIFVANILNYVFSKMKNGEGWRYSLGLAAVPAIMIIIGAIFLPDTPSSLIERGQNDKAKKELISIRGTTDVDEEFQDLVAASDISKTVEHPWASLLTRPYRPHLTMAIFIPFFQQFTGMNVITFYAPVLFKTIGFSSDASLMSALITGGCNALATLVSIATVDKFGRRTLFIQGGIQMLICQIVIAIAIAIKFGVSGDPGVLPKWYAIVVVMCICVYVAGFAWSWGPLGWLVPSEIFPLEVRSAAQSINVSVNMIFTFIIAQIFTTMLCHMKFGLFIFFAFFVVVMTTFIYKFLPETKGVPIEEMSTVWEKHPYWSDFVKAKPKPNDQELGKR