Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76888.t1 | XP_013459371.1 | 98.8 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 5.30E-85 | 323.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76888.t1 | P24922 | 95.0 | 159 | 8 | 0 | 1 | 159 | 1 | 159 | 5.6e-83 | 308.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76888.t1 | I3T5P6 | 98.8 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 3.8e-85 | 323.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene76888 | -0.811528 | 6.69E-51 | -1.69E-46 |
| MS.gene04991 | MS.gene76888 | 0.819891 | 9.15E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene76888 | 0.82273 | 2.03E-53 | -1.69E-46 |
| MS.gene050762 | MS.gene76888 | -0.814429 | 1.55E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene76888 | -0.815075 | 1.11E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene76888 | -0.809598 | 1.75E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene76888 | -0.830327 | 3.13E-55 | -1.69E-46 |
| MS.gene05761 | MS.gene76888 | -0.817148 | 3.83E-52 | -1.69E-46 |
| MS.gene057929 | MS.gene76888 | -0.807819 | 4.20E-50 | -1.69E-46 |
| MS.gene058503 | MS.gene76888 | -0.802295 | 6.00E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene76888 | -0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene060869 | MS.gene76888 | -0.809938 | 1.48E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76888.t1 | MTR_3g437680 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 4.28e-117 | 328 |
| MS.gene76888.t1 | MTR_3g437680 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 4.28e-117 | 328 |
| MS.gene76888.t1 | MTR_4g109130 | 96.250 | 160 | 6 | 0 | 1 | 160 | 1 | 160 | 1.56e-112 | 316 |
| MS.gene76888.t1 | MTR_5g042990 | 92.453 | 159 | 12 | 0 | 1 | 159 | 1 | 159 | 1.91e-108 | 306 |
| MS.gene76888.t1 | MTR_4g130917 | 92.453 | 159 | 12 | 0 | 1 | 159 | 1 | 159 | 3.94e-108 | 305 |
| MS.gene76888.t1 | MTR_5g042990 | 93.701 | 127 | 8 | 0 | 1 | 127 | 1 | 127 | 3.11e-87 | 251 |
| MS.gene76888.t1 | MTR_5g042990 | 87.681 | 138 | 17 | 0 | 1 | 138 | 1 | 138 | 3.63e-87 | 251 |
| MS.gene76888.t1 | MTR_4g130917 | 92.126 | 127 | 10 | 0 | 1 | 127 | 1 | 127 | 7.52e-86 | 248 |
| MS.gene76888.t1 | MTR_4g109130 | 88.333 | 120 | 14 | 0 | 1 | 120 | 1 | 120 | 4.60e-74 | 218 |
| MS.gene76888.t1 | MTR_4g112440 | 71.569 | 102 | 19 | 1 | 1 | 102 | 1 | 92 | 5.45e-48 | 150 |
| MS.gene76888.t1 | MTR_4g130907 | 46.875 | 128 | 20 | 2 | 18 | 145 | 42 | 121 | 5.21e-26 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76888.t1 | AT1G13950 | 92.453 | 159 | 11 | 1 | 1 | 159 | 1 | 158 | 6.68e-107 | 302 |
| MS.gene76888.t1 | AT1G69410 | 86.792 | 159 | 20 | 1 | 1 | 159 | 1 | 158 | 1.91e-100 | 285 |
| MS.gene76888.t1 | AT1G26630 | 80.892 | 157 | 29 | 1 | 1 | 157 | 1 | 156 | 4.63e-93 | 267 |
| MS.gene76888.t1 | AT1G26630 | 83.465 | 127 | 20 | 1 | 1 | 127 | 1 | 126 | 1.96e-76 | 224 |
Find 41 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGGACCAATATCTTTC+AGG | 0.187453 | 3.3:+27118758 | None:intergenic |
| AGTAGTTGAAGCTAGTTCTT+TGG | 0.307459 | 3.3:+27118742 | None:intergenic |
| GTGAGTCTGCTTACTGAAAA+TGG | 0.350641 | 3.3:-27120193 | MS.gene76888:CDS |
| GAAATTGAATAAAACCTTGC+AGG | 0.371958 | 3.3:+27121720 | None:intergenic |
| TTGATCGATATTTCTGAAGA+TGG | 0.379975 | 3.3:-27120323 | MS.gene76888:CDS |
| CTTGGCATGACCATGCTTAC+CGG | 0.382469 | 3.3:+27120538 | None:intergenic |
| ATTAATGCCCTGAAAGATAT+TGG | 0.418980 | 3.3:-27118766 | MS.gene76888:CDS |
| ACCATGCTTACCGGTCTTTG+AGG | 0.422545 | 3.3:+27120547 | None:intergenic |
| CTTTGGACCAATATCTTTCA+GGG | 0.429224 | 3.3:+27118759 | None:intergenic |
| CATGCCAAGTGTCACTTTGT+TGG | 0.465747 | 3.3:-27120524 | MS.gene76888:CDS |
| TCTTGTATGGCAGGTTGTTG+AGG | 0.496646 | 3.3:-27120576 | MS.gene76888:intron |
| TCAACGTACATCACAATTGT+GGG | 0.508011 | 3.3:+27120454 | None:intergenic |
| ATCAACGTACATCACAATTG+TGG | 0.520978 | 3.3:+27120453 | None:intergenic |
| TGTGTCCGTGATGTCTGCTA+TGG | 0.523316 | 3.3:-27118800 | MS.gene76888:CDS |
| AGGATAAGTCTTGGAAGCTC+CGG | 0.527718 | 3.3:+27121795 | None:intergenic |
| AGCTTGTTGAGGATAAGTCT+TGG | 0.533301 | 3.3:+27121786 | None:intergenic |
| CGGATGGTTCCAGCTTGTTG+AGG | 0.536075 | 3.3:+27121775 | None:intergenic |
| TACATCACAATTGTGGGAAG+AGG | 0.536885 | 3.3:+27120460 | None:intergenic |
| CGATCAATGCAGATCAAGGA+AGG | 0.549060 | 3.3:-27118847 | MS.gene76888:intron |
| GAGTTGAATCATGTCGGACG+AGG | 0.551741 | 3.3:-27121845 | None:intergenic |
| TTTGAGTCAAAAGCCGATGC+CGG | 0.561371 | 3.3:-27121814 | MS.gene76888:CDS |
| AGGAAGCTTCAAGTCATCCT+TGG | 0.562183 | 3.3:+27120165 | None:intergenic |
| GTGTCCGTGATGTCTGCTAT+GGG | 0.564696 | 3.3:-27118799 | MS.gene76888:CDS |
| AGTCTTGGAAGCTCCGGCAT+CGG | 0.567163 | 3.3:+27121801 | None:intergenic |
| GAGGTTTCAACCTCAAAGAC+CGG | 0.568619 | 3.3:-27120557 | MS.gene76888:CDS |
| ACCTCAAAGACCGGTAAGCA+TGG | 0.571121 | 3.3:-27120548 | MS.gene76888:CDS |
| CTGAGTAAGCAGATTGTCAT+CGG | 0.573674 | 3.3:+27120141 | None:intergenic |
| AAGACTTATCCTCAACAAGC+TGG | 0.573762 | 3.3:-27121784 | MS.gene76888:CDS |
| CGATGACAATCTGCTTACTC+AGG | 0.577063 | 3.3:-27120140 | MS.gene76888:intron |
| AAATTGAATAAAACCTTGCA+GGG | 0.578822 | 3.3:+27121721 | None:intergenic |
| CGTGATGTCTGCTATGGGTG+AGG | 0.597852 | 3.3:-27118794 | MS.gene76888:CDS |
| ACATCACAATTGTGGGAAGA+GGG | 0.598510 | 3.3:+27120461 | None:intergenic |
| CAGACATCACGGACACAACA+AGG | 0.601971 | 3.3:+27118806 | None:intergenic |
| AATATCGATCAATTGATAGT+CGG | 0.622059 | 3.3:+27120334 | None:intergenic |
| GATAGTCGGTACGATTCACA+TGG | 0.640579 | 3.3:+27120348 | None:intergenic |
| GATTCCAACAAAGTGACACT+TGG | 0.646223 | 3.3:+27120520 | None:intergenic |
| CTCACCCATAGCAGACATCA+CGG | 0.658249 | 3.3:+27118795 | None:intergenic |
| GTAAGCAGATTGTCATCGGT+AGG | 0.661464 | 3.3:+27120145 | None:intergenic |
| TACTGAAAATGGTAACACCA+AGG | 0.675504 | 3.3:-27120182 | MS.gene76888:CDS |
| ATAGTCGGTACGATTCACAT+GGG | 0.694380 | 3.3:+27120349 | None:intergenic |
| TAGTCGGTACGATTCACATG+GGG | 0.757208 | 3.3:+27120350 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATAAAAATAAAACAAAA+AGG | + | chr3.3:27120191-27120210 | None:intergenic | 10.0% |
| !!! | ATTTTATTATTTATAACCTT+TGG | - | chr3.3:27119826-27119845 | MS.gene76888:intron | 10.0% |
| !!! | ATATTGTTTCTTTCAATTTT+TGG | - | chr3.3:27120302-27120321 | MS.gene76888:intron | 15.0% |
| !! | ACTATACAAACCATAAAATT+AGG | + | chr3.3:27119573-27119592 | None:intergenic | 20.0% |
| !! | ACTTGAAAACTAAAAATAAG+TGG | - | chr3.3:27120838-27120857 | MS.gene76888:intron | 20.0% |
| !! | ATCAAACACAAATAAAATCA+TGG | + | chr3.3:27118999-27119018 | None:intergenic | 20.0% |
| !! | ATTTATAATCATTGTAGCTT+TGG | - | chr3.3:27119606-27119625 | MS.gene76888:intron | 20.0% |
| !! | CCAAAGAATAAAACAATTAA+GGG | + | chr3.3:27120637-27120656 | None:intergenic | 20.0% |
| !! | CTATACAAACCATAAAATTA+GGG | + | chr3.3:27119572-27119591 | None:intergenic | 20.0% |
| !! | TAAAATTAACTTTACGACAT+AGG | + | chr3.3:27121312-27121331 | None:intergenic | 20.0% |
| !! | TATTATATAGTTGTTTGAGA+AGG | - | chr3.3:27119267-27119286 | MS.gene76888:intron | 20.0% |
| !! | TATTATTTATAACCTTTGGA+GGG | - | chr3.3:27119830-27119849 | MS.gene76888:intron | 20.0% |
| !! | TTAAAATATCAAGATGTAGA+AGG | - | chr3.3:27120978-27120997 | MS.gene76888:intron | 20.0% |
| !! | TTAATTAATGCCATAAGAAA+AGG | + | chr3.3:27121065-27121084 | None:intergenic | 20.0% |
| !! | TTATTATTTATAACCTTTGG+AGG | - | chr3.3:27119829-27119848 | MS.gene76888:intron | 20.0% |
| !! | TTGTCAGTTAAAATTAACTA+TGG | + | chr3.3:27121025-27121044 | None:intergenic | 20.0% |
| !!! | AAAGTTAATTTTAACCTTTG+AGG | - | chr3.3:27121090-27121109 | MS.gene76888:intron | 20.0% |
| !!! | AATTTGTTTGATTTAATGAC+CGG | - | chr3.3:27120326-27120345 | MS.gene76888:CDS | 20.0% |
| !!! | ATGATTTTATTTGTGTTTGA+TGG | - | chr3.3:27118998-27119017 | MS.gene76888:intron | 20.0% |
| !!! | ATTGAATGATGTTATTTTGT+AGG | - | chr3.3:27120373-27120392 | MS.gene76888:intron | 20.0% |
| !!! | ATTGTTTTAGTGTTTGTTAA+AGG | - | chr3.3:27119433-27119452 | MS.gene76888:intron | 20.0% |
| !!! | CATAAACTAAAATCCATTTT+AGG | + | chr3.3:27120699-27120718 | None:intergenic | 20.0% |
| !!! | CTAAAATGGATTTTAGTTTA+TGG | - | chr3.3:27120697-27120716 | MS.gene76888:intron | 20.0% |
| ! | AAATTGAATAAAACCTTGCA+GGG | + | chr3.3:27118870-27118889 | None:intergenic | 25.0% |
| ! | AACTAACGAAAATCGAAATT+TGG | + | chr3.3:27119055-27119074 | None:intergenic | 25.0% |
| ! | AATACAAAGAATCAACGAAT+AGG | + | chr3.3:27121697-27121716 | None:intergenic | 25.0% |
| ! | AATCAATGATGATTCTGATA+TGG | + | chr3.3:27120614-27120633 | None:intergenic | 25.0% |
| ! | AGAATCAATGAACAGATAAA+CGG | + | chr3.3:27121466-27121485 | None:intergenic | 25.0% |
| ! | ATTAACTATGGCAAAAGAAA+AGG | + | chr3.3:27121013-27121032 | None:intergenic | 25.0% |
| ! | CGATAAAAATTCTCAATTAG+AGG | + | chr3.3:27121723-27121742 | None:intergenic | 25.0% |
| ! | GATGAAGTTAATAACATGTT+TGG | - | chr3.3:27120733-27120752 | MS.gene76888:intron | 25.0% |
| ! | GCCAAAGAATAAAACAATTA+AGG | + | chr3.3:27120638-27120657 | None:intergenic | 25.0% |
| ! | TTCAATACTCATTCTCTTAT+TGG | - | chr3.3:27121143-27121162 | MS.gene76888:intron | 25.0% |
| !! | AATATCGATCAATTGATAGT+CGG | + | chr3.3:27120257-27120276 | None:intergenic | 25.0% |
| !! | AATTGTGACATTAGGATTTT+TGG | + | chr3.3:27119792-27119811 | None:intergenic | 25.0% |
| !! | ATCAAACTGAGATGTTTTAT+CGG | - | chr3.3:27121497-27121516 | MS.gene76888:intron | 25.0% |
| !! | ATGGATTTTCGTAGTTATTT+TGG | - | chr3.3:27119872-27119891 | MS.gene76888:intron | 25.0% |
| !! | CTTTAACTGAGACTTTTTAT+CGG | - | chr3.3:27121624-27121643 | MS.gene76888:intron | 25.0% |
| !! | TGTAGTTTAACCTTTTCTTA+TGG | - | chr3.3:27121052-27121071 | MS.gene76888:intron | 25.0% |
| !!! | AGGGTTTGATTGTTATTTAT+AGG | - | chr3.3:27118950-27118969 | MS.gene76888:intron | 25.0% |
| !!! | CCCTTAATTGTTTTATTCTT+TGG | - | chr3.3:27120634-27120653 | MS.gene76888:intron | 25.0% |
| !!! | CTTAGCTTTAGAACATTTTT+TGG | - | chr3.3:27120522-27120541 | MS.gene76888:CDS | 25.0% |
| !!! | GGGTTTGATTGTTATTTATA+GGG | - | chr3.3:27118951-27118970 | MS.gene76888:intron | 25.0% |
| !!! | TATTGTATTGTTGTTTGACA+AGG | - | chr3.3:27119109-27119128 | MS.gene76888:intron | 25.0% |
| !!! | TTTGACAAGGTTTTAAATTG+AGG | - | chr3.3:27119122-27119141 | MS.gene76888:intron | 25.0% |
| !!! | TTTGAGAAGGTTTTAAAATG+TGG | - | chr3.3:27119280-27119299 | MS.gene76888:intron | 25.0% |
| !!! | TTTTATTCTTTGGCTCAAAT+TGG | - | chr3.3:27120644-27120663 | MS.gene76888:intron | 25.0% |
| AACATAAGGAACACTCTAAA+AGG | + | chr3.3:27119369-27119388 | None:intergenic | 30.0% | |
| ACAACAAGAAACACTCTAAA+AGG | + | chr3.3:27119205-27119224 | None:intergenic | 30.0% | |
| ACAGTACAAATTGTGACATT+AGG | + | chr3.3:27119800-27119819 | None:intergenic | 30.0% | |
| AGACAGAACAAAACAACATA+AGG | + | chr3.3:27119383-27119402 | None:intergenic | 30.0% | |
| ATTAATGCCCTGAAAGATAT+TGG | - | chr3.3:27121822-27121841 | MS.gene76888:CDS | 30.0% | |
| ATTTGAAAACATCAAGCAAG+TGG | - | chr3.3:27120865-27120884 | MS.gene76888:intron | 30.0% | |
| CAATAAAACATCTCAGTTAG+TGG | + | chr3.3:27121596-27121615 | None:intergenic | 30.0% | |
| CAGAATGATCTCAAATCATA+CGG | - | chr3.3:27120936-27120955 | MS.gene76888:intron | 30.0% | |
| CGATAAAAAGTCTCAGTTAA+AGG | + | chr3.3:27121626-27121645 | None:intergenic | 30.0% | |
| CTTTCAGTAACAATAGAATC+CGG | + | chr3.3:27120348-27120367 | None:intergenic | 30.0% | |
| GAAATTGAATAAAACCTTGC+AGG | + | chr3.3:27118871-27118890 | None:intergenic | 30.0% | |
| TAACTTTACGACATAGGAAA+AGG | + | chr3.3:27121306-27121325 | None:intergenic | 30.0% | |
| TAATGTCACAATTTGTACTG+TGG | - | chr3.3:27119799-27119818 | MS.gene76888:intron | 30.0% | |
| TCAACAACATCAATTAATCG+CGG | + | chr3.3:27119531-27119550 | None:intergenic | 30.0% | |
| TCTAATTGTGGCTTAAATCA+TGG | + | chr3.3:27121229-27121248 | None:intergenic | 30.0% | |
| ! | ACATAAGGAACACTCTAAAA+GGG | + | chr3.3:27119368-27119387 | None:intergenic | 30.0% |
| ! | CAACAAGAAACACTCTAAAA+GGG | + | chr3.3:27119204-27119223 | None:intergenic | 30.0% |
| ! | CATCAGAAACCCTAATTTTA+TGG | - | chr3.3:27119560-27119579 | MS.gene76888:intron | 30.0% |
| ! | TCAAACTGAGATGTTTTATC+GGG | - | chr3.3:27121498-27121517 | MS.gene76888:intron | 30.0% |
| ! | TTGATCGATATTTCTGAAGA+TGG | - | chr3.3:27120265-27120284 | MS.gene76888:intron | 30.0% |
| !! | TAACGATGTAACCATTTTTG+CGG | + | chr3.3:27118836-27118855 | None:intergenic | 30.0% |
| !! | TAATAACATGTTTGGTGTGA+GGG | - | chr3.3:27120741-27120760 | MS.gene76888:intron | 30.0% |
| !! | TTAATAACATGTTTGGTGTG+AGG | - | chr3.3:27120740-27120759 | MS.gene76888:intron | 30.0% |
| !!! | AGAAGGTTTTAAAATGTGGT+AGG | - | chr3.3:27119284-27119303 | MS.gene76888:intron | 30.0% |
| !!! | ATGTTGTTTTGTTCTGTCTT+AGG | - | chr3.3:27119384-27119403 | MS.gene76888:intron | 30.0% |
| !!! | TGTTGTTTTGTTCTGTCTTA+GGG | - | chr3.3:27119385-27119404 | MS.gene76888:intron | 30.0% |
| AAATCATACGGCCTTAAAAG+AGG | - | chr3.3:27120948-27120967 | MS.gene76888:intron | 35.0% | |
| AATCATACGGCCTTAAAAGA+GGG | - | chr3.3:27120949-27120968 | MS.gene76888:intron | 35.0% | |
| ATCAACGTACATCACAATTG+TGG | + | chr3.3:27120138-27120157 | None:intergenic | 35.0% | |
| ATCTCAAACTCAGAACTTAG+AGG | + | chr3.3:27121532-27121551 | None:intergenic | 35.0% | |
| ATTGTGATGTACGTTGATGT+TGG | - | chr3.3:27120140-27120159 | MS.gene76888:intron | 35.0% | |
| CAACACTCACTTTCTAATTG+TGG | + | chr3.3:27121241-27121260 | None:intergenic | 35.0% | |
| CACAATTAGAAAGTGAGTGT+TGG | - | chr3.3:27121239-27121258 | MS.gene76888:intron | 35.0% | |
| CTTTGGACCAATATCTTTCA+GGG | + | chr3.3:27121832-27121851 | None:intergenic | 35.0% | |
| GAAATGAGTTCCACTTAAAG+TGG | + | chr3.3:27121190-27121209 | None:intergenic | 35.0% | |
| GATTCTGTGATTGATGTGTT+TGG | - | chr3.3:27119983-27120002 | MS.gene76888:intron | 35.0% | |
| GTGTTTGAAAAGGATTTGTG+TGG | - | chr3.3:27119631-27119650 | MS.gene76888:intron | 35.0% | |
| GTTGTGTCTGTTTGATATTG+TGG | - | chr3.3:27119472-27119491 | MS.gene76888:intron | 35.0% | |
| TAACTTTGGTTGTGTTGGAA+TGG | - | chr3.3:27119853-27119872 | MS.gene76888:intron | 35.0% | |
| TACTGAAAATGGTAACACCA+AGG | - | chr3.3:27120406-27120425 | MS.gene76888:intron | 35.0% | |
| TAGGAGTTCTTAGCCTAAAA+TGG | - | chr3.3:27120683-27120702 | MS.gene76888:intron | 35.0% | |
| TCAACGTACATCACAATTGT+GGG | + | chr3.3:27120137-27120156 | None:intergenic | 35.0% | |
| TCTTTGGACCAATATCTTTC+AGG | + | chr3.3:27121833-27121852 | None:intergenic | 35.0% | |
| TTATCGATCAATGCAGATCA+AGG | - | chr3.3:27121737-27121756 | MS.gene76888:CDS | 35.0% | |
| TTTCACAAAACTTCAATGCG+AGG | + | chr3.3:27120775-27120794 | None:intergenic | 35.0% | |
| ! | AAAGCTAAGCATACTTTTGC+AGG | + | chr3.3:27120511-27120530 | None:intergenic | 35.0% |
| ! | CACAATATCTTCGAGCTTTT+TGG | + | chr3.3:27120107-27120126 | None:intergenic | 35.0% |
| ! | GAGTAGTAATTTTGGACTTG+TGG | - | chr3.3:27119659-27119678 | MS.gene76888:intron | 35.0% |
| ! | GGAATCTACTGCTTTGTTAA+TGG | - | chr3.3:27120477-27120496 | MS.gene76888:CDS | 35.0% |
| ! | TGGTTCAACTTCTAGCTAAT+AGG | - | chr3.3:27120664-27120683 | MS.gene76888:intron | 35.0% |
| ! | TGTTGTATTGTGCTGTTGTA+TGG | - | chr3.3:27119744-27119763 | MS.gene76888:intron | 35.0% |
| ! | TGTTTGGATGGATTCTTGTA+TGG | - | chr3.3:27119999-27120018 | MS.gene76888:intron | 35.0% |
| ! | TTTTCTGTGTTTTGTCTCCT+AGG | - | chr3.3:27120213-27120232 | MS.gene76888:intron | 35.0% |
| !! | AGCTTTGGTAGTGTTTGAAA+AGG | - | chr3.3:27119621-27119640 | MS.gene76888:intron | 35.0% |
| !! | TGGTCTTGGAGTAGTAATTT+TGG | - | chr3.3:27119651-27119670 | MS.gene76888:intron | 35.0% |
| !!! | GTGCTTGTTTTGAACTTTGA+TGG | - | chr3.3:27119953-27119972 | MS.gene76888:intron | 35.0% |
| AAGACTTATCCTCAACAAGC+TGG | - | chr3.3:27118804-27118823 | MS.gene76888:CDS | 40.0% | |
| ACATCACAATTGTGGGAAGA+GGG | + | chr3.3:27120130-27120149 | None:intergenic | 40.0% | |
| ATAGTCGGTACGATTCACAT+GGG | + | chr3.3:27120242-27120261 | None:intergenic | 40.0% | |
| ATCACACACTCTGCGAAATT+AGG | + | chr3.3:27119323-27119342 | None:intergenic | 40.0% | |
| ATCATACGGCCTTAAAAGAG+GGG | - | chr3.3:27120950-27120969 | MS.gene76888:intron | 40.0% | |
| ATCGGTGTATTGTTCCTCTA+AGG | - | chr3.3:27121642-27121661 | MS.gene76888:intron | 40.0% | |
| ATCTCAAACTCAGACCTTAG+AGG | + | chr3.3:27121659-27121678 | None:intergenic | 40.0% | |
| ATCTGCTTACTCAGGTTTGT+AGG | - | chr3.3:27120456-27120475 | MS.gene76888:intron | 40.0% | |
| ATGAGTTCCACTTAAAGTGG+TGG | + | chr3.3:27121187-27121206 | None:intergenic | 40.0% | |
| CTGAGTAAGCAGATTGTCAT+CGG | + | chr3.3:27120450-27120469 | None:intergenic | 40.0% | |
| CTGTGATTGATGTGTTTGGA+TGG | - | chr3.3:27119987-27120006 | MS.gene76888:intron | 40.0% | |
| GAAAAGGATTTGTGTGGTCT+TGG | - | chr3.3:27119637-27119656 | MS.gene76888:intron | 40.0% | |
| GAAAGAGTCTAAGTCGAATG+CGG | - | chr3.3:27119496-27119515 | MS.gene76888:intron | 40.0% | |
| GATTCCAACAAAGTGACACT+TGG | + | chr3.3:27120071-27120090 | None:intergenic | 40.0% | |
| GTGAGTCTGCTTACTGAAAA+TGG | - | chr3.3:27120395-27120414 | MS.gene76888:intron | 40.0% | |
| TAATTTCGCAGAGTGTGTGA+TGG | - | chr3.3:27119322-27119341 | MS.gene76888:intron | 40.0% | |
| TACATCACAATTGTGGGAAG+AGG | + | chr3.3:27120131-27120150 | None:intergenic | 40.0% | |
| TATCAAAAATCGTCCCTGCA+AGG | - | chr3.3:27118854-27118873 | MS.gene76888:intron | 40.0% | |
| TGAGTTCCACTTAAAGTGGT+GGG | + | chr3.3:27121186-27121205 | None:intergenic | 40.0% | |
| TGCGATCCCTTGATATTGTA+GGG | - | chr3.3:27119151-27119170 | MS.gene76888:intron | 40.0% | |
| TTGCGATCCCTTGATATTGT+AGG | - | chr3.3:27119150-27119169 | MS.gene76888:intron | 40.0% | |
| TTGTGGCTTAAATCATGGTG+TGG | + | chr3.3:27121224-27121243 | None:intergenic | 40.0% | |
| ! | ATCAAGGAAGGTTTTGCTGA+GGG | - | chr3.3:27121753-27121772 | MS.gene76888:CDS | 40.0% |
| ! | CTGTTGTATGGCTAGGTTTT+AGG | - | chr3.3:27119756-27119775 | MS.gene76888:intron | 40.0% |
| ! | GAGTTTGAGATGCTCTACTT+TGG | - | chr3.3:27121541-27121560 | MS.gene76888:intron | 40.0% |
| ! | TAACCTTTGGAGGGTAACTT+TGG | - | chr3.3:27119839-27119858 | MS.gene76888:intron | 40.0% |
| ! | TATTGTGCTGTTGTATGGCT+AGG | - | chr3.3:27119749-27119768 | MS.gene76888:intron | 40.0% |
| ! | TTAAGACACCCCCTCTTTTA+AGG | + | chr3.3:27120962-27120981 | None:intergenic | 40.0% |
| !! | AGCTTGTTGAGGATAAGTCT+TGG | + | chr3.3:27118805-27118824 | None:intergenic | 40.0% |
| !! | GATGTAACCATTTTTGCGGA+TGG | + | chr3.3:27118832-27118851 | None:intergenic | 40.0% |
| !! | GTGCTTGTTTTCATCTTCGA+TGG | - | chr3.3:27119911-27119930 | MS.gene76888:intron | 40.0% |
| ACGTGCCCCTACAATATCAA+GGG | + | chr3.3:27119160-27119179 | None:intergenic | 45.0% | |
| AGGAAGCTTCAAGTCATCCT+TGG | + | chr3.3:27120426-27120445 | None:intergenic | 45.0% | |
| AGGATAAGTCTTGGAAGCTC+CGG | + | chr3.3:27118796-27118815 | None:intergenic | 45.0% | |
| CAACCAAAGTTACCCTCCAA+AGG | + | chr3.3:27119845-27119864 | None:intergenic | 45.0% | |
| CGATCAATGCAGATCAAGGA+AGG | - | chr3.3:27121741-27121760 | MS.gene76888:CDS | 45.0% | |
| CGATGACAATCTGCTTACTC+AGG | - | chr3.3:27120448-27120467 | MS.gene76888:intron | 45.0% | |
| GAGGGTAACTTTGGTTGTGT+TGG | - | chr3.3:27119848-27119867 | MS.gene76888:intron | 45.0% | |
| GAGGTTTCAACCTCAAAGAC+CGG | - | chr3.3:27120031-27120050 | MS.gene76888:intron | 45.0% | |
| GATAGTCGGTACGATTCACA+TGG | + | chr3.3:27120243-27120262 | None:intergenic | 45.0% | |
| GCGATCCCTTGATATTGTAG+GGG | - | chr3.3:27119152-27119171 | MS.gene76888:intron | 45.0% | |
| GTAAGCAGATTGTCATCGGT+AGG | + | chr3.3:27120446-27120465 | None:intergenic | 45.0% | |
| GTGTCTCTAGCATTCCTCAA+AGG | + | chr3.3:27121107-27121126 | None:intergenic | 45.0% | |
| TAGTCGGTACGATTCACATG+GGG | + | chr3.3:27120241-27120260 | None:intergenic | 45.0% | |
| TCATACGGCCTTAAAAGAGG+GGG | - | chr3.3:27120951-27120970 | MS.gene76888:intron | 45.0% | |
| TCTGTCTTAGGGTTGTGTCT+AGG | - | chr3.3:27119396-27119415 | MS.gene76888:intron | 45.0% | |
| TCTTGTATGGCAGGTTGTTG+AGG | - | chr3.3:27120012-27120031 | MS.gene76888:intron | 45.0% | |
| TTTGAGTCAAAAGCCGATGC+CGG | - | chr3.3:27118774-27118793 | MS.gene76888:CDS | 45.0% | |
| ! | GATCAAGGAAGGTTTTGCTG+AGG | - | chr3.3:27121752-27121771 | MS.gene76888:CDS | 45.0% |
| ! | TGGATGGATTCTTGTATGGC+AGG | - | chr3.3:27120003-27120022 | MS.gene76888:intron | 45.0% |
| !! | CATGCCAAGTGTCACTTTGT+TGG | - | chr3.3:27120064-27120083 | MS.gene76888:intron | 45.0% |
| !! | TAAAGTGGTGGGTCATGCAT+TGG | + | chr3.3:27121175-27121194 | None:intergenic | 45.0% |
| !!! | CATCGGCTTTTGACTCAAAG+TGG | + | chr3.3:27118773-27118792 | None:intergenic | 45.0% |
| !! | TAATAAAAAAAACAAAATAA+AGG | + | chr3.3:27118931-27118950 | None:intergenic | 5.0% |
| !!! | TTATTTTGTTTTTTTTATTA+GGG | - | chr3.3:27118931-27118950 | MS.gene76888:intron | 5.0% |
| !!! | TTTATTTTGTTTTTTTTATT+AGG | - | chr3.3:27118930-27118949 | MS.gene76888:intron | 5.0% |
| !!! | TTTTTTTTAATTTAGTTTTA+GGG | - | chr3.3:27119702-27119721 | MS.gene76888:intron | 5.0% |
| !!! | TTTTTTTTTAATTTAGTTTT+AGG | - | chr3.3:27119701-27119720 | MS.gene76888:intron | 5.0% |
| ACCATGCTTACCGGTCTTTG+AGG | + | chr3.3:27120044-27120063 | None:intergenic | 50.0% | |
| ACCTCAAAGACCGGTAAGCA+TGG | - | chr3.3:27120040-27120059 | MS.gene76888:intron | 50.0% | |
| ACGATTCACATGGGGAACCT+AGG | + | chr3.3:27120233-27120252 | None:intergenic | 50.0% | |
| CACGTGCCCCTACAATATCA+AGG | + | chr3.3:27119161-27119180 | None:intergenic | 50.0% | |
| CAGACATCACGGACACAACA+AGG | + | chr3.3:27121785-27121804 | None:intergenic | 50.0% | |
| CTCACCCATAGCAGACATCA+CGG | + | chr3.3:27121796-27121815 | None:intergenic | 50.0% | |
| CTTGGCATGACCATGCTTAC+CGG | + | chr3.3:27120053-27120072 | None:intergenic | 50.0% | |
| GCATGACCCACCACTTTAAG+TGG | - | chr3.3:27121177-27121196 | MS.gene76888:intron | 50.0% | |
| GCTGGAACCATCCGCAAAAA+TGG | - | chr3.3:27118822-27118841 | MS.gene76888:CDS | 50.0% | |
| GTGTCCGTGATGTCTGCTAT+GGG | - | chr3.3:27121789-27121808 | MS.gene76888:CDS | 50.0% | |
| TCATGGTGTGGCTCACACTT+TGG | + | chr3.3:27121212-27121231 | None:intergenic | 50.0% | |
| TGTGTCCGTGATGTCTGCTA+TGG | - | chr3.3:27121788-27121807 | MS.gene76888:CDS | 50.0% | |
| ! | GATATTGTAGGGGCACGTGA+TGG | - | chr3.3:27119162-27119181 | MS.gene76888:intron | 50.0% |
| ! | GGAAGGTTTTGCTGAGGGTA+AGG | - | chr3.3:27121758-27121777 | MS.gene76888:CDS | 50.0% |
| AGTCTTGGAAGCTCCGGCAT+CGG | + | chr3.3:27118790-27118809 | None:intergenic | 55.0% | |
| CGTGATGTCTGCTATGGGTG+AGG | - | chr3.3:27121794-27121813 | MS.gene76888:CDS | 55.0% | |
| TTCGCAGAGTGTGTGATGGC+TGG | - | chr3.3:27119326-27119345 | MS.gene76888:intron | 55.0% | |
| !! | CGGATGGTTCCAGCTTGTTG+AGG | + | chr3.3:27118816-27118835 | None:intergenic | 55.0% |
| GCAGAGTGTGTGATGGCTGG+CGG | - | chr3.3:27119329-27119348 | MS.gene76888:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 27118753 | 27121857 | 27118753 | ID=MS.gene76888 |
| chr3.3 | mRNA | 27118753 | 27121857 | 27118753 | ID=MS.gene76888.t1;Parent=MS.gene76888 |
| chr3.3 | exon | 27121735 | 27121857 | 27121735 | ID=MS.gene76888.t1.exon1;Parent=MS.gene76888.t1 |
| chr3.3 | CDS | 27121735 | 27121857 | 27121735 | ID=cds.MS.gene76888.t1;Parent=MS.gene76888.t1 |
| chr3.3 | exon | 27120463 | 27120585 | 27120463 | ID=MS.gene76888.t1.exon2;Parent=MS.gene76888.t1 |
| chr3.3 | CDS | 27120463 | 27120585 | 27120463 | ID=cds.MS.gene76888.t1;Parent=MS.gene76888.t1 |
| chr3.3 | exon | 27120319 | 27120375 | 27120319 | ID=MS.gene76888.t1.exon3;Parent=MS.gene76888.t1 |
| chr3.3 | CDS | 27120319 | 27120375 | 27120319 | ID=cds.MS.gene76888.t1;Parent=MS.gene76888.t1 |
| chr3.3 | exon | 27120141 | 27120215 | 27120141 | ID=MS.gene76888.t1.exon4;Parent=MS.gene76888.t1 |
| chr3.3 | CDS | 27120141 | 27120215 | 27120141 | ID=cds.MS.gene76888.t1;Parent=MS.gene76888.t1 |
| chr3.3 | exon | 27118753 | 27118857 | 27118753 | ID=MS.gene76888.t1.exon5;Parent=MS.gene76888.t1 |
| chr3.3 | CDS | 27118753 | 27118857 | 27118753 | ID=cds.MS.gene76888.t1;Parent=MS.gene76888.t1 |
| Gene Sequence |
| Protein sequence |
