Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77513.t1 | XP_003601649.1 | 99.1 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 6.00E-176 | 626.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77513.t1 | Q9LIR9 | 73.6 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 1.2e-124 | 447.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77513.t1 | G7JA72 | 99.1 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 4.3e-176 | 626.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52088 | MS.gene77513 | PPI |
| MS.gene77513 | MS.gene002040 | PPI |
| MS.gene057722 | MS.gene77513 | PPI |
| MS.gene77513 | MS.gene057722 | PPI |
| MS.gene77513 | MS.gene90964 | PPI |
| MS.gene77513 | MS.gene00614 | PPI |
| MS.gene77513 | MS.gene072062 | PPI |
| MS.gene77513 | MS.gene047204 | PPI |
| MS.gene77513 | MS.gene52088 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77513.t1 | MTR_3g083960 | 99.080 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 0.0 | 660 |
| MS.gene77513.t1 | MTR_8g081650 | 78.882 | 322 | 68 | 0 | 1 | 322 | 1 | 322 | 0.0 | 513 |
| MS.gene77513.t1 | MTR_2g006070 | 70.234 | 299 | 89 | 0 | 2 | 300 | 12 | 310 | 2.04e-152 | 431 |
| MS.gene77513.t1 | MTR_5g090020 | 58.383 | 334 | 130 | 2 | 1 | 325 | 1 | 334 | 2.80e-133 | 383 |
| MS.gene77513.t1 | MTR_8g095060 | 58.466 | 313 | 128 | 2 | 3 | 315 | 1 | 311 | 2.97e-133 | 383 |
| MS.gene77513.t1 | MTR_4g074050 | 57.792 | 308 | 129 | 1 | 1 | 308 | 1 | 307 | 6.55e-133 | 381 |
| MS.gene77513.t1 | MTR_3g097220 | 55.224 | 335 | 138 | 2 | 4 | 326 | 3 | 337 | 1.55e-131 | 378 |
| MS.gene77513.t1 | MTR_3g097220 | 56.832 | 322 | 137 | 2 | 4 | 325 | 3 | 322 | 3.26e-131 | 377 |
| MS.gene77513.t1 | MTR_2g006070 | 69.099 | 233 | 72 | 0 | 2 | 234 | 12 | 244 | 2.60e-109 | 318 |
| MS.gene77513.t1 | MTR_5g090020 | 56.777 | 273 | 110 | 1 | 61 | 325 | 17 | 289 | 2.60e-102 | 303 |
| MS.gene77513.t1 | MTR_2g006070 | 70.745 | 188 | 55 | 0 | 2 | 189 | 12 | 199 | 4.79e-87 | 260 |
| MS.gene77513.t1 | MTR_3g097220 | 52.423 | 227 | 106 | 2 | 99 | 325 | 1 | 225 | 8.87e-82 | 248 |
| MS.gene77513.t1 | MTR_6g033100 | 20.548 | 292 | 216 | 2 | 50 | 325 | 52 | 343 | 1.01e-13 | 72.0 |
| MS.gene77513.t1 | MTR_5g049870 | 45.455 | 77 | 30 | 2 | 240 | 308 | 166 | 238 | 1.19e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77513.t1 | AT1G71900 | 71.380 | 297 | 85 | 0 | 2 | 298 | 14 | 310 | 3.80e-161 | 453 |
| MS.gene77513.t1 | AT1G71900 | 71.380 | 297 | 85 | 0 | 2 | 298 | 14 | 310 | 3.70e-160 | 451 |
| MS.gene77513.t1 | AT1G34470 | 70.370 | 297 | 88 | 0 | 2 | 298 | 14 | 310 | 8.68e-155 | 438 |
| MS.gene77513.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene77513.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene77513.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene77513.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene77513.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene77513.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene77513.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene77513.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene77513.t1 | AT4G09640 | 66.049 | 324 | 109 | 1 | 2 | 325 | 14 | 336 | 8.06e-145 | 414 |
| MS.gene77513.t1 | AT2G21120 | 55.385 | 325 | 139 | 2 | 3 | 326 | 1 | 320 | 2.75e-132 | 380 |
| MS.gene77513.t1 | AT4G38730 | 55.590 | 322 | 137 | 1 | 5 | 326 | 3 | 318 | 3.13e-132 | 379 |
| MS.gene77513.t1 | AT4G13800 | 74.144 | 263 | 68 | 0 | 3 | 265 | 4 | 266 | 1.78e-128 | 368 |
| MS.gene77513.t1 | AT4G13800 | 74.144 | 263 | 68 | 0 | 3 | 265 | 4 | 266 | 1.78e-128 | 368 |
| MS.gene77513.t1 | AT3G23870 | 70.925 | 227 | 66 | 0 | 87 | 313 | 8 | 234 | 1.65e-111 | 324 |
| MS.gene77513.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene77513.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene77513.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene77513.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene77513.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
| MS.gene77513.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
| MS.gene77513.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
| MS.gene77513.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
Find 68 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCAGCATAATAATGTTTA+AGG | 0.148866 | 3.2:-72429163 | MS.gene77513:intron |
| CCTTCACAAAACTAAGGATA+TGG | 0.215788 | 3.2:-72428766 | MS.gene77513:CDS |
| ATATCCTCCGACAACGTTAT+TGG | 0.275140 | 3.2:-72430865 | MS.gene77513:CDS |
| TGCTCACAAGCTTCAAATTT+CGG | 0.287897 | 3.2:+72428668 | None:intergenic |
| TGCCATCCTTGTAACTCCTT+TGG | 0.293323 | 3.2:-72430128 | MS.gene77513:CDS |
| AAAGAGAGATTGCATGTCTT+TGG | 0.311793 | 3.2:-72429975 | MS.gene77513:CDS |
| GCCATCCTTGTAACTCCTTT+GGG | 0.313908 | 3.2:-72430127 | MS.gene77513:CDS |
| CTTCAAATTTCGGATCTATC+TGG | 0.323795 | 3.2:+72428678 | None:intergenic |
| TATTGTATACTCTTGCTTGA+TGG | 0.331593 | 3.2:-72429686 | MS.gene77513:CDS |
| CAACGTTATTGGTCTTTGTT+TGG | 0.334057 | 3.2:-72430854 | MS.gene77513:CDS |
| CATTATTATGCTGGCGATGA+TGG | 0.391168 | 3.2:+72429170 | None:intergenic |
| TTCTCTCACGGGCTCAATTA+CGG | 0.396382 | 3.2:-72429584 | MS.gene77513:intron |
| TTCATTCTGTCAAGGAAGTA+TGG | 0.396932 | 3.2:-72429881 | MS.gene77513:CDS |
| TTGCATGTCTTTGGCGTGCT+TGG | 0.400448 | 3.2:-72429966 | MS.gene77513:CDS |
| GGTGTCTTAGCAGTATTGTT+AGG | 0.405653 | 3.2:+72428699 | None:intergenic |
| GGATGTGCTCTCTGTGTGGT+GGG | 0.414278 | 3.2:-72429945 | MS.gene77513:CDS |
| ACCTGCTCTATTCCCATTAG+TGG | 0.423488 | 3.2:+72430765 | None:intergenic |
| TACCTTAAACATTATTATGC+TGG | 0.433334 | 3.2:+72429161 | None:intergenic |
| ACCCATCTGGTTGTTTATGT+TGG | 0.437188 | 3.2:-72429613 | MS.gene77513:CDS |
| GCTTTGAAACTTTCATTTGA+AGG | 0.443933 | 3.2:-72429431 | MS.gene77513:CDS |
| GTAAACATGACATAGTAAAC+TGG | 0.470336 | 3.2:+72429201 | None:intergenic |
| CTTCACAAAACTAAGGATAT+GGG | 0.475464 | 3.2:-72428765 | MS.gene77513:CDS |
| TTCTTTACATTAGTTGTGAT+AGG | 0.477243 | 3.2:-72429377 | MS.gene77513:CDS |
| CTCTTGCTTGATGGTGGCGC+TGG | 0.486099 | 3.2:-72429677 | MS.gene77513:CDS |
| TCAAGTAGTTGATTTGCAAA+AGG | 0.495628 | 3.2:+72429348 | None:intergenic |
| TGTTGGAATATGTTCTCTCA+CGG | 0.496357 | 3.2:-72429596 | MS.gene77513:CDS |
| TATGAACCACGGTGGTGGGC+TGG | 0.499044 | 3.2:-72430616 | MS.gene77513:CDS |
| TGGATGTGCTCTCTGTGTGG+TGG | 0.507876 | 3.2:-72429946 | MS.gene77513:CDS |
| ATTTGTATGAACCACGGTGG+TGG | 0.514111 | 3.2:-72430621 | MS.gene77513:CDS |
| CTTTGAAACTTTCATTTGAA+GGG | 0.519723 | 3.2:-72429430 | MS.gene77513:CDS |
| GCCACTAATGGGAATAGAGC+AGG | 0.531481 | 3.2:-72430766 | MS.gene77513:intron |
| GTTCCTCCTTCACAAAACTA+AGG | 0.540910 | 3.2:-72428772 | MS.gene77513:CDS |
| GAGTTATGGACAGACCCATC+TGG | 0.542858 | 3.2:-72429626 | MS.gene77513:CDS |
| GAAGAAAGAGAAATTTCTGC+GGG | 0.546163 | 3.2:+72428735 | None:intergenic |
| AAAGGAGTTACAAGGATGGC+AGG | 0.547456 | 3.2:+72430130 | None:intergenic |
| TGATATCACATTAGTGTTGA+AGG | 0.550363 | 3.2:+72429224 | None:intergenic |
| TGGCAACTTGCTACAGAACC+AGG | 0.550915 | 3.2:-72429861 | MS.gene77513:intron |
| ACAAAGACCAATAACGTTGT+CGG | 0.553789 | 3.2:+72430858 | None:intergenic |
| CAGATTGTGACGGAGTTGTG+TGG | 0.559234 | 3.2:-72428819 | MS.gene77513:CDS |
| TGTATACTCTTGCTTGATGG+TGG | 0.561771 | 3.2:-72429683 | MS.gene77513:CDS |
| GTTGGAATATGTTCTCTCAC+GGG | 0.563829 | 3.2:-72429595 | MS.gene77513:CDS |
| TTCCAACATAAACAACCAGA+TGG | 0.564436 | 3.2:+72429611 | None:intergenic |
| GTTATGTGTGTCAAAGCAGT+AGG | 0.569363 | 3.2:-72429458 | MS.gene77513:CDS |
| AAGCTCCCAAAGGAGTTACA+AGG | 0.569548 | 3.2:+72430122 | None:intergenic |
| GATGTGCTCTCTGTGTGGTG+GGG | 0.576392 | 3.2:-72429944 | MS.gene77513:CDS |
| AATTTATTTACTTTGAGACA+TGG | 0.581957 | 3.2:-72429400 | MS.gene77513:CDS |
| TCTTAGCAGTATTGTTAGGA+CGG | 0.583449 | 3.2:+72428703 | None:intergenic |
| TGAATTTGATCAGCCACAGG+AGG | 0.600352 | 3.2:-72430652 | MS.gene77513:intron |
| TTTGTATGAACCACGGTGGT+GGG | 0.606218 | 3.2:-72430620 | MS.gene77513:CDS |
| AGATTGTGACGGAGTTGTGT+GGG | 0.607230 | 3.2:-72428818 | MS.gene77513:CDS |
| TTTCTTCACAGTGATTGTTG+GGG | 0.624149 | 3.2:-72430185 | MS.gene77513:intron |
| GAATTTGATCAGCCACAGGA+GGG | 0.627579 | 3.2:-72430651 | MS.gene77513:intron |
| GCAAATCAACTACTTGAACA+AGG | 0.627635 | 3.2:-72429342 | MS.gene77513:intron |
| GAGAGTCATTCATTCTGTCA+AGG | 0.628128 | 3.2:-72429889 | MS.gene77513:CDS |
| TCCAACATAAACAACCAGAT+GGG | 0.633993 | 3.2:+72429612 | None:intergenic |
| GCTGGCGATGATGGTAAATG+AGG | 0.637214 | 3.2:+72429179 | None:intergenic |
| TGAAGAAAGAGAAATTTCTG+CGG | 0.650008 | 3.2:+72428734 | None:intergenic |
| GCAGTATTGTTAGGACGGTG+TGG | 0.650836 | 3.2:+72428708 | None:intergenic |
| CAAATATGAATGCCCTCCTG+TGG | 0.653211 | 3.2:+72430639 | None:intergenic |
| ATTCATATTTGTATGAACCA+CGG | 0.657686 | 3.2:-72430627 | MS.gene77513:CDS |
| TCCCAAAGGAGTTACAAGGA+TGG | 0.664654 | 3.2:+72430126 | None:intergenic |
| GCTTGGATGTGCTCTCTGTG+TGG | 0.668530 | 3.2:-72429949 | MS.gene77513:CDS |
| ATGATGCTTAAAGCTCCCAA+AGG | 0.673384 | 3.2:+72430112 | None:intergenic |
| AAGACCAATAACGTTGTCGG+AGG | 0.673692 | 3.2:+72430861 | None:intergenic |
| GAATGAATGACTCTCTCATG+TGG | 0.682284 | 3.2:+72429897 | None:intergenic |
| GTCATTCCAGCCCACCACCG+TGG | 0.686381 | 3.2:+72430610 | None:intergenic |
| AGATGCGTCTCAGATTGTGA+CGG | 0.697608 | 3.2:-72428829 | MS.gene77513:CDS |
| CATATTTGTATGAACCACGG+TGG | 0.737806 | 3.2:-72430624 | MS.gene77513:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCTTCATAATTAAAAAAAT+GGG | - | chr3.2:72428749-72428768 | MS.gene77513:CDS | 15.0% |
| !! | TAGCTTCATAATTAAAAAAA+TGG | - | chr3.2:72428748-72428767 | MS.gene77513:CDS | 15.0% |
| !! | TGTCTTTATAACTATTATTT+AGG | + | chr3.2:72430655-72430674 | None:intergenic | 15.0% |
| !!! | ATATTATAAATAACTTGTGA+TGG | + | chr3.2:72430448-72430467 | None:intergenic | 15.0% |
| !!! | ATTATTTAGGTTTCAAAAAA+AGG | + | chr3.2:72430642-72430661 | None:intergenic | 15.0% |
| !! | AAATAAATAAACCATCAAGA+CGG | + | chr3.2:72430679-72430698 | None:intergenic | 20.0% |
| !! | CTTAAAAGTTAAAACTCATT+CGG | - | chr3.2:72429151-72429170 | MS.gene77513:intron | 20.0% |
| !!! | AAAATAGTATAAGTTGAACA+TGG | + | chr3.2:72429273-72429292 | None:intergenic | 20.0% |
| !!! | AATTTATTTACTTTGAGACA+TGG | - | chr3.2:72430151-72430170 | MS.gene77513:CDS | 20.0% |
| !!! | AGTTGTTATGTTAGTTTATA+GGG | - | chr3.2:72429108-72429127 | MS.gene77513:intron | 20.0% |
| !!! | ATTTTTTTTTCTCTTCATCT+GGG | - | chr3.2:72428814-72428833 | MS.gene77513:CDS | 20.0% |
| !!! | GTATGTTTCTTATTTAATCT+GGG | - | chr3.2:72430279-72430298 | MS.gene77513:intron | 20.0% |
| !!! | TAGTTGTTATGTTAGTTTAT+AGG | - | chr3.2:72429107-72429126 | MS.gene77513:intron | 20.0% |
| !!! | TATTTTTTTTTCTCTTCATC+TGG | - | chr3.2:72428813-72428832 | MS.gene77513:CDS | 20.0% |
| !!! | TCTTGATGGTTTATTTATTT+TGG | - | chr3.2:72430679-72430698 | MS.gene77513:intron | 20.0% |
| !!! | TGTATGTTTCTTATTTAATC+TGG | - | chr3.2:72430278-72430297 | MS.gene77513:intron | 20.0% |
| ! | AACCTATATATGCAAAAACT+AGG | + | chr3.2:72430076-72430095 | None:intergenic | 25.0% |
| ! | AAGAAACATACAAAAGAACA+TGG | + | chr3.2:72430270-72430289 | None:intergenic | 25.0% |
| ! | ATACGTTATTATATCTCTCT+AGG | - | chr3.2:72429226-72429245 | MS.gene77513:CDS | 25.0% |
| ! | ATTCATATTTGTATGAACCA+CGG | - | chr3.2:72428924-72428943 | MS.gene77513:intron | 25.0% |
| ! | TACCTTAAACATTATTATGC+TGG | + | chr3.2:72430393-72430412 | None:intergenic | 25.0% |
| ! | TTCTTTACATTAGTTGTGAT+AGG | - | chr3.2:72430174-72430193 | MS.gene77513:CDS | 25.0% |
| !!! | ATCCTAGTTTTTGCATATAT+AGG | - | chr3.2:72430071-72430090 | MS.gene77513:intron | 25.0% |
| !!! | ATGAGTTTTAACTTTTAAGC+AGG | + | chr3.2:72429150-72429169 | None:intergenic | 25.0% |
| !!! | CTCAAAAGTATCATGAATTA+AGG | - | chr3.2:72430018-72430037 | MS.gene77513:intron | 25.0% |
| !!! | CTTTGAAACTTTCATTTGAA+GGG | - | chr3.2:72430121-72430140 | MS.gene77513:CDS | 25.0% |
| !!! | GTACTTTTTGAAGCTTTAAT+TGG | - | chr3.2:72429712-72429731 | MS.gene77513:intron | 25.0% |
| !!! | TTAGTAAAGGTTTTGAATCA+TGG | - | chr3.2:72430505-72430524 | MS.gene77513:intron | 25.0% |
| AGGATCAATAAGTTTGTAGA+AGG | + | chr3.2:72430056-72430075 | None:intergenic | 30.0% | |
| AGTTTAAGTGAGATGCATTA+TGG | - | chr3.2:72429739-72429758 | MS.gene77513:intron | 30.0% | |
| CTTCACAAAACTAAGGATAT+GGG | - | chr3.2:72430786-72430805 | MS.gene77513:CDS | 30.0% | |
| GTAAACATGACATAGTAAAC+TGG | + | chr3.2:72430353-72430372 | None:intergenic | 30.0% | |
| TATTGTATACTCTTGCTTGA+TGG | - | chr3.2:72429865-72429884 | MS.gene77513:CDS | 30.0% | |
| TCTTTCTCTCATGAATGAAT+AGG | - | chr3.2:72429839-72429858 | MS.gene77513:intron | 30.0% | |
| TGAAGAAAGAGAAATTTCTG+CGG | + | chr3.2:72430820-72430839 | None:intergenic | 30.0% | |
| TTAAAAAAGCTGCCACTAAT+GGG | - | chr3.2:72428774-72428793 | MS.gene77513:CDS | 30.0% | |
| TTTGCAATTGGGTTTAGTAA+AGG | - | chr3.2:72430492-72430511 | MS.gene77513:intron | 30.0% | |
| TTTGTTGGCAATTTGCAATT+GGG | - | chr3.2:72430481-72430500 | MS.gene77513:intron | 30.0% | |
| ! | GGTTTGTGACAATTTTATCT+GGG | - | chr3.2:72430754-72430773 | MS.gene77513:intron | 30.0% |
| ! | GTGAGTGATTTTCTATCTTA+TGG | - | chr3.2:72428969-72428988 | MS.gene77513:intron | 30.0% |
| ! | TAACTTTTAAGCAGGAAGTT+CGG | + | chr3.2:72429142-72429161 | None:intergenic | 30.0% |
| ! | TGATATCACATTAGTGTTGA+AGG | + | chr3.2:72430330-72430349 | None:intergenic | 30.0% |
| ! | TTTAATCTGGGATACTATTG+TGG | - | chr3.2:72430291-72430310 | MS.gene77513:intron | 30.0% |
| ! | TTTTCTTCACAGTGATTGTT+GGG | - | chr3.2:72429365-72429384 | MS.gene77513:CDS | 30.0% |
| !! | AAGTTTTGATGTCTCTACAA+CGG | + | chr3.2:72430603-72430622 | None:intergenic | 30.0% |
| !! | AGGTAACTTGTTAAATTCCA+AGG | - | chr3.2:72430408-72430427 | MS.gene77513:intron | 30.0% |
| !! | GCTTTGAAACTTTCATTTGA+AGG | - | chr3.2:72430120-72430139 | MS.gene77513:CDS | 30.0% |
| !! | GTTCTAAAGGAATTCATTTC+TGG | - | chr3.2:72429770-72429789 | MS.gene77513:intron | 30.0% |
| !! | TCAAGTAGTTGATTTGCAAA+AGG | + | chr3.2:72430206-72430225 | None:intergenic | 30.0% |
| !! | TTAAAGCTTCAAAAAGTACC+TGG | + | chr3.2:72429711-72429730 | None:intergenic | 30.0% |
| !!! | AAGGTTTTGAATCATGGTAA+CGG | - | chr3.2:72430511-72430530 | MS.gene77513:intron | 30.0% |
| !!! | TATGGTCTTTTTGGTTCTAA+AGG | - | chr3.2:72429757-72429776 | MS.gene77513:intron | 30.0% |
| !!! | TCCTTATTTTCGTTTTTGCA+CGG | - | chr3.2:72429903-72429922 | MS.gene77513:CDS | 30.0% |
| AAAGAGAGATTGCATGTCTT+TGG | - | chr3.2:72429576-72429595 | MS.gene77513:intron | 35.0% | |
| ACAAAGACCAATAACGTTGT+CGG | + | chr3.2:72428696-72428715 | None:intergenic | 35.0% | |
| ACATCAAAACTTTGATGTCG+CGG | - | chr3.2:72430611-72430630 | MS.gene77513:CDS | 35.0% | |
| CAACAATCACTGTGAAGAAA+AGG | + | chr3.2:72429366-72429385 | None:intergenic | 35.0% | |
| CACATGCAATTGAACAAGAT+TGG | + | chr3.2:72429020-72429039 | None:intergenic | 35.0% | |
| CCTTCACAAAACTAAGGATA+TGG | - | chr3.2:72430785-72430804 | MS.gene77513:CDS | 35.0% | |
| CGCCAGCATAATAATGTTTA+AGG | - | chr3.2:72430388-72430407 | MS.gene77513:intron | 35.0% | |
| CGGCAATATAACTGTGAATT+AGG | + | chr3.2:72430583-72430602 | None:intergenic | 35.0% | |
| CTACTTGAACAAGGTATGTA+CGG | - | chr3.2:72430218-72430237 | MS.gene77513:intron | 35.0% | |
| CTTAAAAAAGCTGCCACTAA+TGG | - | chr3.2:72428773-72428792 | MS.gene77513:CDS | 35.0% | |
| CTTTGTTGGCAATTTGCAAT+TGG | - | chr3.2:72430480-72430499 | MS.gene77513:intron | 35.0% | |
| GAAGAAAGAGAAATTTCTGC+GGG | + | chr3.2:72430819-72430838 | None:intergenic | 35.0% | |
| GCAAATCAACTACTTGAACA+AGG | - | chr3.2:72430209-72430228 | MS.gene77513:intron | 35.0% | |
| TAACGTATATAGCACGTGAT+TGG | + | chr3.2:72429214-72429233 | None:intergenic | 35.0% | |
| TATAAAGACAACCGTCTTGA+TGG | - | chr3.2:72430665-72430684 | MS.gene77513:intron | 35.0% | |
| TCCAACATAAACAACCAGAT+GGG | + | chr3.2:72429942-72429961 | None:intergenic | 35.0% | |
| TCCGTGCAAAAACGAAAATA+AGG | + | chr3.2:72429907-72429926 | None:intergenic | 35.0% | |
| TCTTAGCAGTATTGTTAGGA+CGG | + | chr3.2:72430851-72430870 | None:intergenic | 35.0% | |
| TGGAATATTTCAATGTGCCT+TGG | + | chr3.2:72430428-72430447 | None:intergenic | 35.0% | |
| TGTTGGAATATGTTCTCTCA+CGG | - | chr3.2:72429955-72429974 | MS.gene77513:CDS | 35.0% | |
| TTCATTCTGTCAAGGAAGTA+TGG | - | chr3.2:72429670-72429689 | MS.gene77513:CDS | 35.0% | |
| TTCCAACATAAACAACCAGA+TGG | + | chr3.2:72429943-72429962 | None:intergenic | 35.0% | |
| TTTCTTCACAGTGATTGTTG+GGG | - | chr3.2:72429366-72429385 | MS.gene77513:CDS | 35.0% | |
| ! | AACTTTTAAGCAGGAAGTTC+GGG | + | chr3.2:72429141-72429160 | None:intergenic | 35.0% |
| ! | CTGTCTTCAAGCATTTTCAT+TGG | - | chr3.2:72428722-72428741 | MS.gene77513:CDS | 35.0% |
| ! | CTTTTCTTCACAGTGATTGT+TGG | - | chr3.2:72429364-72429383 | MS.gene77513:CDS | 35.0% |
| ! | GAGATGCATTATGGTCTTTT+TGG | - | chr3.2:72429748-72429767 | MS.gene77513:intron | 35.0% |
| ! | GGGTTTGTGACAATTTTATC+TGG | - | chr3.2:72430753-72430772 | MS.gene77513:intron | 35.0% |
| !! | ATTCAGCCTTGTTTCTCTAA+AGG | + | chr3.2:72430547-72430566 | None:intergenic | 35.0% |
| !! | CAACGTTATTGGTCTTTGTT+TGG | - | chr3.2:72428697-72428716 | MS.gene77513:CDS | 35.0% |
| !! | TTCAGCCTTGTTTCTCTAAA+GGG | + | chr3.2:72430546-72430565 | None:intergenic | 35.0% |
| !!! | ATTTATTTTGGCTGCAGGAA+TGG | - | chr3.2:72430691-72430710 | MS.gene77513:intron | 35.0% |
| !!! | CCATATCCTTAGTTTTGTGA+AGG | + | chr3.2:72430788-72430807 | None:intergenic | 35.0% |
| !!! | GAGCTTTAAGCATCATTTTC+AGG | - | chr3.2:72429446-72429465 | MS.gene77513:CDS | 35.0% |
| !!! | GGTTTATTTATTTTGGCTGC+AGG | - | chr3.2:72430686-72430705 | MS.gene77513:intron | 35.0% |
| !!! | TATCCTTAGTTTTGTGAAGG+AGG | + | chr3.2:72430785-72430804 | None:intergenic | 35.0% |
| !!! | TTTATTTTGGCTGCAGGAAT+GGG | - | chr3.2:72430692-72430711 | MS.gene77513:intron | 35.0% |
| ACCCATCTGGTTGTTTATGT+TGG | - | chr3.2:72429938-72429957 | MS.gene77513:CDS | 40.0% | |
| ATATCCTCCGACAACGTTAT+TGG | - | chr3.2:72428686-72428705 | MS.gene77513:CDS | 40.0% | |
| ATGATGCTTAAAGCTCCCAA+AGG | + | chr3.2:72429442-72429461 | None:intergenic | 40.0% | |
| CATATTTGTATGAACCACGG+TGG | - | chr3.2:72428927-72428946 | MS.gene77513:intron | 40.0% | |
| CATTATTATGCTGGCGATGA+TGG | + | chr3.2:72430384-72430403 | None:intergenic | 40.0% | |
| GAATGAATGACTCTCTCATG+TGG | + | chr3.2:72429657-72429676 | None:intergenic | 40.0% | |
| GAGAGTCATTCATTCTGTCA+AGG | - | chr3.2:72429662-72429681 | MS.gene77513:CDS | 40.0% | |
| GGAAATTCTGCACAATGAGA+TGG | + | chr3.2:72429252-72429271 | None:intergenic | 40.0% | |
| GGTGTCTTAGCAGTATTGTT+AGG | + | chr3.2:72430855-72430874 | None:intergenic | 40.0% | |
| GTTATGTGTGTCAAAGCAGT+AGG | - | chr3.2:72430093-72430112 | MS.gene77513:intron | 40.0% | |
| GTTCCTCCTTCACAAAACTA+AGG | - | chr3.2:72430779-72430798 | MS.gene77513:CDS | 40.0% | |
| GTTGGAATATGTTCTCTCAC+GGG | - | chr3.2:72429956-72429975 | MS.gene77513:CDS | 40.0% | |
| TACTACTAACATTCGCCTGT+CGG | + | chr3.2:72429089-72429108 | None:intergenic | 40.0% | |
| TCTTGAATTTGATCAGCCAC+AGG | - | chr3.2:72428896-72428915 | MS.gene77513:intron | 40.0% | |
| TGTATACTCTTGCTTGATGG+TGG | - | chr3.2:72429868-72429887 | MS.gene77513:CDS | 40.0% | |
| ! | ACTTTTAAGCAGGAAGTTCG+GGG | + | chr3.2:72429140-72429159 | None:intergenic | 40.0% |
| ! | GTCAACCCTTTAGAGAAACA+AGG | - | chr3.2:72430538-72430557 | MS.gene77513:intron | 40.0% |
| !! | ATCTGCATGTGTAGCTTTGT+TGG | - | chr3.2:72430466-72430485 | MS.gene77513:intron | 40.0% |
| !! | TTCGTTTTTGCACGGAGTTA+TGG | - | chr3.2:72429911-72429930 | MS.gene77513:CDS | 40.0% |
| !!! | TGTGCTGTATTTTTTCCGAC+AGG | - | chr3.2:72429071-72429090 | MS.gene77513:intron | 40.0% |
| AAAGGAGTTACAAGGATGGC+AGG | + | chr3.2:72429424-72429443 | None:intergenic | 45.0% | |
| AAGACCAATAACGTTGTCGG+AGG | + | chr3.2:72428693-72428712 | None:intergenic | 45.0% | |
| AAGCTCCCAAAGGAGTTACA+AGG | + | chr3.2:72429432-72429451 | None:intergenic | 45.0% | |
| AAGGTATGTACGGTTGAGTG+TGG | - | chr3.2:72430228-72430247 | MS.gene77513:intron | 45.0% | |
| ACCTGCTCTATTCCCATTAG+TGG | + | chr3.2:72428789-72428808 | None:intergenic | 45.0% | |
| AGATGCGTCTCAGATTGTGA+CGG | - | chr3.2:72430722-72430741 | MS.gene77513:intron | 45.0% | |
| ATTTGTATGAACCACGGTGG+TGG | - | chr3.2:72428930-72428949 | MS.gene77513:intron | 45.0% | |
| CAAATATGAATGCCCTCCTG+TGG | + | chr3.2:72428915-72428934 | None:intergenic | 45.0% | |
| GAATTTGATCAGCCACAGGA+GGG | - | chr3.2:72428900-72428919 | MS.gene77513:intron | 45.0% | |
| GATACTATTGTGGCAGGCTT+TGG | - | chr3.2:72430301-72430320 | MS.gene77513:intron | 45.0% | |
| GCCATCCTTGTAACTCCTTT+GGG | - | chr3.2:72429424-72429443 | MS.gene77513:CDS | 45.0% | |
| TCCCAAAGGAGTTACAAGGA+TGG | + | chr3.2:72429428-72429447 | None:intergenic | 45.0% | |
| TGAATTTGATCAGCCACAGG+AGG | - | chr3.2:72428899-72428918 | MS.gene77513:intron | 45.0% | |
| TGCCATCCTTGTAACTCCTT+TGG | - | chr3.2:72429423-72429442 | MS.gene77513:CDS | 45.0% | |
| TTCTCTCACGGGCTCAATTA+CGG | - | chr3.2:72429967-72429986 | MS.gene77513:CDS | 45.0% | |
| TTTGTATGAACCACGGTGGT+GGG | - | chr3.2:72428931-72428950 | MS.gene77513:intron | 45.0% | |
| ! | AGATTGTGACGGAGTTGTGT+GGG | - | chr3.2:72430733-72430752 | MS.gene77513:intron | 45.0% |
| ! | ATCTGGGATACTATTGTGGC+AGG | - | chr3.2:72430295-72430314 | MS.gene77513:intron | 45.0% |
| ! | GTTTCTCTAAAGGGTTGACG+CGG | + | chr3.2:72430537-72430556 | None:intergenic | 45.0% |
| GAGTTATGGACAGACCCATC+TGG | - | chr3.2:72429925-72429944 | MS.gene77513:CDS | 50.0% | |
| GCAGTATTGTTAGGACGGTG+TGG | + | chr3.2:72430846-72430865 | None:intergenic | 50.0% | |
| GCCAACGGAACTACCTATGT+GGG | - | chr3.2:72429187-72429206 | MS.gene77513:CDS | 50.0% | |
| GCCACTAATGGGAATAGAGC+AGG | - | chr3.2:72428785-72428804 | MS.gene77513:CDS | 50.0% | |
| TCCCACATAGGTAGTTCCGT+TGG | + | chr3.2:72429191-72429210 | None:intergenic | 50.0% | |
| TGTACGGTTGAGTGTGGAAG+TGG | - | chr3.2:72430234-72430253 | MS.gene77513:intron | 50.0% | |
| TTGCATGTCTTTGGCGTGCT+TGG | - | chr3.2:72429585-72429604 | MS.gene77513:CDS | 50.0% | |
| ! | CAGATTGTGACGGAGTTGTG+TGG | - | chr3.2:72430732-72430751 | MS.gene77513:intron | 50.0% |
| ! | GCTGGCGATGATGGTAAATG+AGG | + | chr3.2:72430375-72430394 | None:intergenic | 50.0% |
| !! | TGGCAACTTGCTACAGAACC+AGG | - | chr3.2:72429690-72429709 | MS.gene77513:CDS | 50.0% |
| AGTTCCGTTGGCGAGCTAAG+AGG | + | chr3.2:72429179-72429198 | None:intergenic | 55.0% | |
| CGCCAACGGAACTACCTATG+TGG | - | chr3.2:72429186-72429205 | MS.gene77513:CDS | 55.0% | |
| GATGTGCTCTCTGTGTGGTG+GGG | - | chr3.2:72429607-72429626 | MS.gene77513:CDS | 55.0% | |
| GCTTGGATGTGCTCTCTGTG+TGG | - | chr3.2:72429602-72429621 | MS.gene77513:CDS | 55.0% | |
| GGATGTGCTCTCTGTGTGGT+GGG | - | chr3.2:72429606-72429625 | MS.gene77513:CDS | 55.0% | |
| GGTACCTCTTAGCTCGCCAA+CGG | - | chr3.2:72429172-72429191 | MS.gene77513:CDS | 55.0% | |
| TGGATGTGCTCTCTGTGTGG+TGG | - | chr3.2:72429605-72429624 | MS.gene77513:CDS | 55.0% | |
| ! | GCACGTGATTGGTCCCACAT+AGG | + | chr3.2:72429203-72429222 | None:intergenic | 55.0% |
| !! | CTCTTGCTTGATGGTGGCGC+TGG | - | chr3.2:72429874-72429893 | MS.gene77513:CDS | 60.0% |
| !! | TATGAACCACGGTGGTGGGC+TGG | - | chr3.2:72428935-72428954 | MS.gene77513:intron | 60.0% |
| GTCATTCCAGCCCACCACCG+TGG | + | chr3.2:72428944-72428963 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 72428680 | 72430893 | 72428680 | ID=MS.gene77513 |
| chr3.2 | mRNA | 72428680 | 72430893 | 72428680 | ID=MS.gene77513.t1;Parent=MS.gene77513 |
| chr3.2 | exon | 72430767 | 72430893 | 72430767 | ID=MS.gene77513.t1.exon1;Parent=MS.gene77513.t1 |
| chr3.2 | CDS | 72430767 | 72430893 | 72430767 | ID=cds.MS.gene77513.t1;Parent=MS.gene77513.t1 |
| chr3.2 | exon | 72430605 | 72430661 | 72430605 | ID=MS.gene77513.t1.exon2;Parent=MS.gene77513.t1 |
| chr3.2 | CDS | 72430605 | 72430661 | 72430605 | ID=cds.MS.gene77513.t1;Parent=MS.gene77513.t1 |
| chr3.2 | exon | 72430106 | 72430196 | 72430106 | ID=MS.gene77513.t1.exon3;Parent=MS.gene77513.t1 |
| chr3.2 | CDS | 72430106 | 72430196 | 72430106 | ID=cds.MS.gene77513.t1;Parent=MS.gene77513.t1 |
| chr3.2 | exon | 72429862 | 72430022 | 72429862 | ID=MS.gene77513.t1.exon4;Parent=MS.gene77513.t1 |
| chr3.2 | CDS | 72429862 | 72430022 | 72429862 | ID=cds.MS.gene77513.t1;Parent=MS.gene77513.t1 |
| chr3.2 | exon | 72429585 | 72429712 | 72429585 | ID=MS.gene77513.t1.exon5;Parent=MS.gene77513.t1 |
| chr3.2 | CDS | 72429585 | 72429712 | 72429585 | ID=cds.MS.gene77513.t1;Parent=MS.gene77513.t1 |
| chr3.2 | exon | 72429343 | 72429480 | 72429343 | ID=MS.gene77513.t1.exon6;Parent=MS.gene77513.t1 |
| chr3.2 | CDS | 72429343 | 72429480 | 72429343 | ID=cds.MS.gene77513.t1;Parent=MS.gene77513.t1 |
| chr3.2 | exon | 72429164 | 72429256 | 72429164 | ID=MS.gene77513.t1.exon7;Parent=MS.gene77513.t1 |
| chr3.2 | CDS | 72429164 | 72429256 | 72429164 | ID=cds.MS.gene77513.t1;Parent=MS.gene77513.t1 |
| chr3.2 | exon | 72428680 | 72428865 | 72428680 | ID=MS.gene77513.t1.exon8;Parent=MS.gene77513.t1 |
| chr3.2 | CDS | 72428680 | 72428865 | 72428680 | ID=cds.MS.gene77513.t1;Parent=MS.gene77513.t1 |
| Gene Sequence |
| Protein sequence |
