Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78312.t1 | XP_003626362.1 | 98 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 2.20E-80 | 308.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78312.t1 | Q02610 | 92.1 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 5.1e-78 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78312.t1 | B7FGV9 | 98.0 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 1.6e-80 | 308.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053873 | MS.gene78312 | -0.818258 | 2.15E-52 | -1.69E-46 |
| MS.gene054486 | MS.gene78312 | -0.829704 | 4.44E-55 | -1.69E-46 |
| MS.gene055909 | MS.gene78312 | -0.819571 | 1.08E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene78312 | -0.824433 | 8.09E-54 | -1.69E-46 |
| MS.gene056924 | MS.gene78312 | 0.805416 | 1.35E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78312 | MS.gene62862 | PPI |
| MS.gene011492 | MS.gene78312 | PPI |
| MS.gene71901 | MS.gene78312 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78312.t1 | MTR_7g114240 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 8.28e-105 | 296 |
| MS.gene78312.t1 | MTR_6g029200 | 70.199 | 151 | 44 | 1 | 2 | 151 | 8 | 158 | 1.56e-69 | 207 |
| MS.gene78312.t1 | MTR_7g114240 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 1.87e-68 | 203 |
| MS.gene78312.t1 | MTR_4g057240 | 69.014 | 142 | 43 | 1 | 9 | 150 | 63 | 203 | 1.75e-67 | 203 |
| MS.gene78312.t1 | MTR_6g029200 | 68.000 | 150 | 39 | 1 | 2 | 151 | 8 | 148 | 2.02e-65 | 196 |
| MS.gene78312.t1 | MTR_4g101820 | 34.234 | 111 | 65 | 2 | 13 | 123 | 165 | 267 | 1.08e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78312.t1 | AT1G08830 | 83.553 | 152 | 25 | 0 | 1 | 152 | 1 | 152 | 3.09e-88 | 254 |
| MS.gene78312.t1 | AT1G08830 | 83.553 | 152 | 25 | 0 | 1 | 152 | 1 | 152 | 3.09e-88 | 254 |
| MS.gene78312.t1 | AT2G28190 | 68.919 | 148 | 46 | 0 | 3 | 150 | 66 | 213 | 6.72e-71 | 213 |
| MS.gene78312.t1 | AT5G18100 | 64.667 | 150 | 53 | 0 | 2 | 151 | 8 | 157 | 3.17e-67 | 201 |
| MS.gene78312.t1 | AT5G18100 | 61.417 | 127 | 49 | 0 | 2 | 128 | 8 | 134 | 1.46e-52 | 163 |
| MS.gene78312.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 36 | 139 | 3.00e-12 | 61.6 |
| MS.gene78312.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 81 | 184 | 4.21e-12 | 62.0 |
| MS.gene78312.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 172 | 275 | 1.20e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTTGTTGTAGGTATTAT+TGG | 0.169884 | 7.4:+2962400 | MS.gene78312:intron |
| ATTCGACATGCTGGTGATTT+AGG | 0.204339 | 7.4:+2961174 | MS.gene78312:CDS |
| GGCTTCCATATCCATGCCTT+GGG | 0.292332 | 7.4:+2960794 | MS.gene78312:CDS |
| ACTGTGACCGGAAATCTTTC+TGG | 0.298064 | 7.4:+2960752 | MS.gene78312:CDS |
| GCCCTTCCTATGATTGAGTT+TGG | 0.330134 | 7.4:-2961701 | None:intergenic |
| CTTAAGACCAGAAAGATTTC+CGG | 0.340182 | 7.4:-2960759 | None:intergenic |
| GCACCGTGCTCCTTACCATT+AGG | 0.399615 | 7.4:-2961138 | None:intergenic |
| GTGAAGGCTGTGGCAGTTCT+TGG | 0.413587 | 7.4:+2960571 | MS.gene78312:CDS |
| GGTCTTAAGCCTGGCCTCCA+TGG | 0.414866 | 7.4:+2960773 | MS.gene78312:CDS |
| TGGCTTCCATATCCATGCCT+TGG | 0.423080 | 7.4:+2960793 | MS.gene78312:CDS |
| ACTGGACCAAACTCAATCAT+AGG | 0.429060 | 7.4:+2961695 | MS.gene78312:CDS |
| GCATGTCGAATCTCATCCTC+AGG | 0.433796 | 7.4:-2961162 | None:intergenic |
| CTTCACCATTACTGACAATC+AGG | 0.444656 | 7.4:+2961361 | MS.gene78312:CDS |
| ACAAATGGTTGCATGTCAAC+TGG | 0.450246 | 7.4:+2960824 | MS.gene78312:CDS |
| GGACCACATTTCAATCCTAA+TGG | 0.461674 | 7.4:+2961123 | MS.gene78312:intron |
| GTACCTTTCCCAAGATCATC+AGG | 0.463574 | 7.4:-2961743 | None:intergenic |
| CATGCCGATCCTGATGATCT+TGG | 0.469419 | 7.4:+2961734 | MS.gene78312:CDS |
| AGCTTCTCTCAGGAGGGAAA+TGG | 0.473090 | 7.4:+2960622 | MS.gene78312:CDS |
| ATGCCGATCCTGATGATCTT+GGG | 0.478164 | 7.4:+2961735 | MS.gene78312:CDS |
| AATGTCACTGTCGGCGATGA+TGG | 0.482153 | 7.4:+2961198 | MS.gene78312:CDS |
| TGGTACTATTAGCTTCTCTC+AGG | 0.486454 | 7.4:+2960612 | MS.gene78312:CDS |
| AGTTGACATGCAACCATTTG+TGG | 0.493212 | 7.4:-2960822 | None:intergenic |
| AATCTTTCTGGTCTTAAGCC+TGG | 0.494092 | 7.4:+2960764 | MS.gene78312:CDS |
| AGATTTCCGGTCACAGTGGT+TGG | 0.506019 | 7.4:-2960746 | None:intergenic |
| CATGAGCTTAGCAAGACTAC+TGG | 0.517405 | 7.4:+2962062 | MS.gene78312:CDS |
| ATATGGAAGCCATGGAGGCC+AGG | 0.527324 | 7.4:-2960782 | None:intergenic |
| AGGCATGGATATGGAAGCCA+TGG | 0.529289 | 7.4:-2960790 | None:intergenic |
| AGCAAGACTACTGGAAATGC+TGG | 0.533538 | 7.4:+2962071 | MS.gene78312:CDS |
| GCAGGTCCAACCACTGTGAC+CGG | 0.534164 | 7.4:+2960740 | MS.gene78312:intron |
| GTAGGTATTATTGGCTTGCA+AGG | 0.540422 | 7.4:+2962409 | MS.gene78312:intron |
| TGTTCACAGATCCCTCTCAC+TGG | 0.549506 | 7.4:+2961677 | MS.gene78312:intron |
| GGTAACAGTAATGATGTCTC+TGG | 0.553348 | 7.4:+2960592 | MS.gene78312:CDS |
| ACATTTCAATCCTAATGGTA+AGG | 0.554760 | 7.4:+2961128 | MS.gene78312:CDS |
| TACTATTAGCTTCTCTCAGG+AGG | 0.557121 | 7.4:+2960615 | MS.gene78312:CDS |
| GACCAAACTCAATCATAGGA+AGG | 0.559020 | 7.4:+2961699 | MS.gene78312:CDS |
| GTCAGTAATGGTGAAGCTTG+CGG | 0.567650 | 7.4:-2961354 | None:intergenic |
| ATTGAGTTTGGTCCAGTGAG+AGG | 0.575707 | 7.4:-2961689 | None:intergenic |
| TTGAGTTTGGTCCAGTGAGA+GGG | 0.579337 | 7.4:-2961688 | None:intergenic |
| GATTTAGGAAATGTCACTGT+CGG | 0.580192 | 7.4:+2961189 | MS.gene78312:CDS |
| TTGAACAATGGTGAAGGCTG+TGG | 0.590785 | 7.4:+2960561 | None:intergenic |
| ACATACCTGATTGTCAGTAA+TGG | 0.594183 | 7.4:-2961366 | None:intergenic |
| GAGGATGAGATTCGACATGC+TGG | 0.598972 | 7.4:+2961165 | MS.gene78312:CDS |
| ATCACATTGAACAATGGTGA+AGG | 0.610273 | 7.4:+2960555 | None:intergenic |
| GATCCTGATGATCTTGGGAA+AGG | 0.612525 | 7.4:+2961740 | MS.gene78312:CDS |
| GCTTCCATATCCATGCCTTG+GGG | 0.616548 | 7.4:+2960795 | MS.gene78312:CDS |
| AATCCTAATGGTAAGGAGCA+CGG | 0.625283 | 7.4:+2961135 | MS.gene78312:CDS |
| ACCAAACTCAATCATAGGAA+GGG | 0.632037 | 7.4:+2961700 | MS.gene78312:CDS |
| CATGGATATGGAAGCCATGG+AGG | 0.632624 | 7.4:-2960787 | None:intergenic |
| ACTATTAGCTTCTCTCAGGA+GGG | 0.637590 | 7.4:+2960616 | MS.gene78312:CDS |
| CATGTCGAATCTCATCCTCA+GGG | 0.638518 | 7.4:-2961161 | None:intergenic |
| TTTCCCAAGATCATCAGGAT+CGG | 0.641905 | 7.4:-2961738 | None:intergenic |
| TTACCATTAGGATTGAAATG+TGG | 0.656736 | 7.4:-2961126 | None:intergenic |
| CTTCCATATCCATGCCTTGG+GGG | 0.658207 | 7.4:+2960796 | MS.gene78312:CDS |
| TAAGGAGCACGGTGCCCCTG+AGG | 0.679963 | 7.4:+2961146 | MS.gene78312:CDS |
| AAGACTACTGGAAATGCTGG+TGG | 0.685336 | 7.4:+2962074 | MS.gene78312:CDS |
| AGAAAGATTTCCGGTCACAG+TGG | 0.704388 | 7.4:-2960750 | None:intergenic |
| ATGTCGAATCTCATCCTCAG+GGG | 0.738664 | 7.4:-2961160 | None:intergenic |
| GCTGGTGGCAGAGTAGCTTG+TGG | 0.784017 | 7.4:+2962089 | MS.gene78312:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAATAAAATCAAG+TGG | - | chr7.4:2961260-2961279 | None:intergenic | 15.0% |
| !! | ATTTCTAATGAATTATTCTA+GGG | + | chr7.4:2961415-2961434 | MS.gene78312:intron | 15.0% |
| !! | TAACCTATAAAACATATAAA+AGG | - | chr7.4:2960982-2961001 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTAACTTTAAAA+TGG | + | chr7.4:2961305-2961324 | MS.gene78312:intron | 15.0% |
| !!! | TATCCTTTTATATGTTTTAT+AGG | + | chr7.4:2960976-2960995 | MS.gene78312:intron | 15.0% |
| !! | AGATAACAATTAGAAAATGA+AGG | - | chr7.4:2962355-2962374 | None:intergenic | 20.0% |
| !! | ATTATTCTAAATTGACAACA+AGG | + | chr7.4:2961621-2961640 | MS.gene78312:intron | 20.0% |
| !! | CATTTCTAATGAATTATTCT+AGG | + | chr7.4:2961414-2961433 | MS.gene78312:intron | 20.0% |
| !! | GATAACAATTAGAAAATGAA+GGG | - | chr7.4:2962354-2962373 | None:intergenic | 20.0% |
| !! | TTAAATAAATAATAGAAGCG+CGG | - | chr7.4:2961064-2961083 | None:intergenic | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | - | chr7.4:2961479-2961498 | None:intergenic | 20.0% |
| !!! | GATTTTATTTTTTTTGTGAC+CGG | + | chr7.4:2961263-2961282 | MS.gene78312:intron | 20.0% |
| !!! | GTTTCATTTTTAATATCTTG+AGG | + | chr7.4:2960869-2960888 | MS.gene78312:intron | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | - | chr7.4:2961480-2961499 | None:intergenic | 20.0% |
| !!! | TGTTGTCAATTTAGAATAAT+GGG | - | chr7.4:2961621-2961640 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAATTTAGAATAA+TGG | - | chr7.4:2961622-2961641 | None:intergenic | 20.0% |
| ! | ATGAAACAAATTATTGTCCA+AGG | - | chr7.4:2960856-2960875 | None:intergenic | 25.0% |
| ! | TGAAAACTGAATCTTGAATT+TGG | - | chr7.4:2962330-2962349 | None:intergenic | 25.0% |
| !! | CTTTTGAATCTGTTTAATAC+AGG | + | chr7.4:2961102-2961121 | MS.gene78312:intron | 25.0% |
| !! | TGTTTTCAGTAACAAATTCA+AGG | - | chr7.4:2962269-2962288 | None:intergenic | 25.0% |
| !! | TTTTGCATAACATTTCATCT+CGG | + | chr7.4:2962021-2962040 | MS.gene78312:intron | 25.0% |
| !!! | AACCTTAATTTTTTGCATCA+CGG | - | chr7.4:2962182-2962201 | None:intergenic | 25.0% |
| !!! | AAGCACATTTTAAAGATAAC+CGG | - | chr7.4:2961285-2961304 | None:intergenic | 25.0% |
| !!! | TTTTAGTTATCTTCTTTTCC+AGG | + | chr7.4:2961234-2961253 | MS.gene78312:intron | 25.0% |
| !!! | TTTTTTAAACATTGACTGTG+CGG | + | chr7.4:2962143-2962162 | MS.gene78312:intron | 25.0% |
| AAAAATAAAATCAAGTGGCC+TGG | - | chr7.4:2961255-2961274 | None:intergenic | 30.0% | |
| AAACAAAAACTTACTCTTCG+CGG | - | chr7.4:2960671-2960690 | None:intergenic | 30.0% | |
| AACTTCCCTCAACAATAAAT+GGG | - | chr7.4:2961802-2961821 | None:intergenic | 30.0% | |
| AAGGTTCAAATGATCTTTAG+AGG | + | chr7.4:2962196-2962215 | MS.gene78312:intron | 30.0% | |
| AATAATACCTACAACAAACG+GGG | - | chr7.4:2962401-2962420 | None:intergenic | 30.0% | |
| AATTGTCCCATTTATTGTTG+AGG | + | chr7.4:2961793-2961812 | MS.gene78312:intron | 30.0% | |
| ACATTTCAATCCTAATGGTA+AGG | + | chr7.4:2961128-2961147 | MS.gene78312:CDS | 30.0% | |
| AGATTCATTCAAGCAAATTG+AGG | - | chr7.4:2960929-2960948 | None:intergenic | 30.0% | |
| ATTGTCCCATTTATTGTTGA+GGG | + | chr7.4:2961794-2961813 | MS.gene78312:intron | 30.0% | |
| ATTTGTGACGATCACTTTAT+AGG | - | chr7.4:2961887-2961906 | None:intergenic | 30.0% | |
| CAATAATACCTACAACAAAC+GGG | - | chr7.4:2962402-2962421 | None:intergenic | 30.0% | |
| CCAATAATACCTACAACAAA+CGG | - | chr7.4:2962403-2962422 | None:intergenic | 30.0% | |
| GATTAAAAGTTGAAACTCTC+AGG | - | chr7.4:2961647-2961666 | None:intergenic | 30.0% | |
| GATTCATTCAAGCAAATTGA+GGG | - | chr7.4:2960928-2960947 | None:intergenic | 30.0% | |
| GCAATACATGTTAATCGATT+TGG | - | chr7.4:2960713-2960732 | None:intergenic | 30.0% | |
| TAACTTCCCTCAACAATAAA+TGG | - | chr7.4:2961803-2961822 | None:intergenic | 30.0% | |
| TTACCATTAGGATTGAAATG+TGG | - | chr7.4:2961129-2961148 | None:intergenic | 30.0% | |
| TTGCTTGAATGAATCTAAAG+TGG | + | chr7.4:2960933-2960952 | MS.gene78312:intron | 30.0% | |
| !! | AACTTTAAAATGGTTTCCTC+TGG | + | chr7.4:2961315-2961334 | MS.gene78312:intron | 30.0% |
| !! | TTGGAAACACTTTTTGTGTT+TGG | + | chr7.4:2961833-2961852 | MS.gene78312:intron | 30.0% |
| AACACAATTCATTCTCGACT+TGG | - | chr7.4:2961019-2961038 | None:intergenic | 35.0% | |
| AAGTGATCGTCACAAATTCA+AGG | + | chr7.4:2961890-2961909 | MS.gene78312:intron | 35.0% | |
| ACATACCTGATTGTCAGTAA+TGG | - | chr7.4:2961369-2961388 | None:intergenic | 35.0% | |
| ACCAAACTCAATCATAGGAA+GGG | + | chr7.4:2961700-2961719 | MS.gene78312:CDS | 35.0% | |
| AGTGATCGTCACAAATTCAA+GGG | + | chr7.4:2961891-2961910 | MS.gene78312:intron | 35.0% | |
| CATGTTAAGCAACCCAAAAA+TGG | + | chr7.4:2961464-2961483 | MS.gene78312:intron | 35.0% | |
| CTTAAGACCAGAAAGATTTC+CGG | - | chr7.4:2960762-2960781 | None:intergenic | 35.0% | |
| GACTGTGCGGTATAAAAAAA+AGG | + | chr7.4:2962156-2962175 | MS.gene78312:intron | 35.0% | |
| GATTTAGGAAATGTCACTGT+CGG | + | chr7.4:2961189-2961208 | MS.gene78312:CDS | 35.0% | |
| TGTCATATTATGCTAGAGCT+AGG | - | chr7.4:2961946-2961965 | None:intergenic | 35.0% | |
| ! | GGGAAGTTAACACAATCTTT+TGG | + | chr7.4:2961814-2961833 | MS.gene78312:intron | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | + | chr7.4:2961579-2961598 | MS.gene78312:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | + | chr7.4:2961580-2961599 | MS.gene78312:intron | 35.0% |
| !! | CCGTTTGTTGTAGGTATTAT+TGG | + | chr7.4:2962400-2962419 | MS.gene78312:intron | 35.0% |
| AATCCTAATGGTAAGGAGCA+CGG | + | chr7.4:2961135-2961154 | MS.gene78312:CDS | 40.0% | |
| ACAAATGGTTGCATGTCAAC+TGG | + | chr7.4:2960824-2960843 | MS.gene78312:CDS | 40.0% | |
| ACATGTATTGCGAATTGTGC+AGG | + | chr7.4:2960722-2960741 | MS.gene78312:intron | 40.0% | |
| ACTGGACCAAACTCAATCAT+AGG | + | chr7.4:2961695-2961714 | MS.gene78312:CDS | 40.0% | |
| AGAACCTATGAGACAGTAAC+AGG | - | chr7.4:2962297-2962316 | None:intergenic | 40.0% | |
| AGGCACTATTGAGTATGAGT+CGG | + | chr7.4:2960889-2960908 | MS.gene78312:intron | 40.0% | |
| AGTTGACATGCAACCATTTG+TGG | - | chr7.4:2960825-2960844 | None:intergenic | 40.0% | |
| ATGTCAACTGGTAAAGTCCT+TGG | + | chr7.4:2960836-2960855 | MS.gene78312:intron | 40.0% | |
| ATTCGACATGCTGGTGATTT+AGG | + | chr7.4:2961174-2961193 | MS.gene78312:CDS | 40.0% | |
| CTTCACCATTACTGACAATC+AGG | + | chr7.4:2961361-2961380 | MS.gene78312:CDS | 40.0% | |
| GACCAAACTCAATCATAGGA+AGG | + | chr7.4:2961699-2961718 | MS.gene78312:CDS | 40.0% | |
| GGACCACATTTCAATCCTAA+TGG | + | chr7.4:2961123-2961142 | MS.gene78312:intron | 40.0% | |
| GGCCGTGATGCAAAAAATTA+AGG | + | chr7.4:2962177-2962196 | MS.gene78312:intron | 40.0% | |
| GGTAACAGTAATGATGTCTC+TGG | + | chr7.4:2960592-2960611 | MS.gene78312:CDS | 40.0% | |
| TGGTAAGTTTCAACAGCCTT+TGG | + | chr7.4:2960642-2960661 | MS.gene78312:intron | 40.0% | |
| TTGCTTAACATGTGCCCTAA+GGG | - | chr7.4:2961456-2961475 | None:intergenic | 40.0% | |
| TTGTCCTGTTACTGTCTCAT+AGG | + | chr7.4:2962290-2962309 | MS.gene78312:intron | 40.0% | |
| TTTCCCAAGATCATCAGGAT+CGG | - | chr7.4:2961741-2961760 | None:intergenic | 40.0% | |
| ! | ACTATTAGCTTCTCTCAGGA+GGG | + | chr7.4:2960616-2960635 | MS.gene78312:CDS | 40.0% |
| ! | GTGAGAAGTTCTGACAATCA+TGG | + | chr7.4:2962239-2962258 | MS.gene78312:intron | 40.0% |
| ! | TACTATTAGCTTCTCTCAGG+AGG | + | chr7.4:2960615-2960634 | MS.gene78312:CDS | 40.0% |
| ! | TGGTACTATTAGCTTCTCTC+AGG | + | chr7.4:2960612-2960631 | MS.gene78312:CDS | 40.0% |
| !! | AATCTTTCTGGTCTTAAGCC+TGG | + | chr7.4:2960764-2960783 | MS.gene78312:CDS | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr7.4:2961597-2961616 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr7.4:2961439-2961458 | MS.gene78312:intron | 40.0% |
| !! | GTAGGTATTATTGGCTTGCA+AGG | + | chr7.4:2962409-2962428 | MS.gene78312:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr7.4:2961438-2961457 | MS.gene78312:intron | 40.0% |
| AAGACTACTGGAAATGCTGG+TGG | + | chr7.4:2962074-2962093 | MS.gene78312:CDS | 45.0% | |
| ACTGTGACCGGAAATCTTTC+TGG | + | chr7.4:2960752-2960771 | MS.gene78312:CDS | 45.0% | |
| AGAAAGATTTCCGGTCACAG+TGG | - | chr7.4:2960753-2960772 | None:intergenic | 45.0% | |
| AGCAAGACTACTGGAAATGC+TGG | + | chr7.4:2962071-2962090 | MS.gene78312:CDS | 45.0% | |
| ATGCCGATCCTGATGATCTT+GGG | + | chr7.4:2961735-2961754 | MS.gene78312:CDS | 45.0% | |
| ATGTCGAATCTCATCCTCAG+GGG | - | chr7.4:2961163-2961182 | None:intergenic | 45.0% | |
| ATTGAGTTTGGTCCAGTGAG+AGG | - | chr7.4:2961692-2961711 | None:intergenic | 45.0% | |
| CATGAGCTTAGCAAGACTAC+TGG | + | chr7.4:2962062-2962081 | MS.gene78312:CDS | 45.0% | |
| CATGTCGAATCTCATCCTCA+GGG | - | chr7.4:2961164-2961183 | None:intergenic | 45.0% | |
| GATCCTGATGATCTTGGGAA+AGG | + | chr7.4:2961740-2961759 | MS.gene78312:CDS | 45.0% | |
| GCCCTTCCTATGATTGAGTT+TGG | - | chr7.4:2961704-2961723 | None:intergenic | 45.0% | |
| GGCACTATTGAGTATGAGTC+GGG | + | chr7.4:2960890-2960909 | MS.gene78312:intron | 45.0% | |
| GTACCTTTCCCAAGATCATC+AGG | - | chr7.4:2961746-2961765 | None:intergenic | 45.0% | |
| GTCAGTAATGGTGAAGCTTG+CGG | - | chr7.4:2961357-2961376 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | chr7.4:2961457-2961476 | None:intergenic | 45.0% | |
| TCATCTCGGTACTGCTGTAT+AGG | + | chr7.4:2962035-2962054 | MS.gene78312:intron | 45.0% | |
| TTCCTCTGGTTGTGTAACTC+AGG | + | chr7.4:2961329-2961348 | MS.gene78312:intron | 45.0% | |
| TTCCTGAGTTACACAACCAG+AGG | - | chr7.4:2961334-2961353 | None:intergenic | 45.0% | |
| TTGAGTTTGGTCCAGTGAGA+GGG | - | chr7.4:2961691-2961710 | None:intergenic | 45.0% | |
| !! | ATCTGTTCCCCGTTTGTTGT+AGG | + | chr7.4:2962391-2962410 | MS.gene78312:intron | 45.0% |
| AATGTCACTGTCGGCGATGA+TGG | + | chr7.4:2961198-2961217 | MS.gene78312:CDS | 50.0% | |
| AGATTTCCGGTCACAGTGGT+TGG | - | chr7.4:2960749-2960768 | None:intergenic | 50.0% | |
| AGCTTCTCTCAGGAGGGAAA+TGG | + | chr7.4:2960622-2960641 | MS.gene78312:CDS | 50.0% | |
| AGGCATGGATATGGAAGCCA+TGG | - | chr7.4:2960793-2960812 | None:intergenic | 50.0% | |
| CATGCCGATCCTGATGATCT+TGG | + | chr7.4:2961734-2961753 | MS.gene78312:CDS | 50.0% | |
| CATGGATATGGAAGCCATGG+AGG | - | chr7.4:2960790-2960809 | None:intergenic | 50.0% | |
| CTTCCATATCCATGCCTTGG+GGG | + | chr7.4:2960796-2960815 | MS.gene78312:CDS | 50.0% | |
| GAGGATGAGATTCGACATGC+TGG | + | chr7.4:2961165-2961184 | MS.gene78312:CDS | 50.0% | |
| GCATGTCGAATCTCATCCTC+AGG | - | chr7.4:2961165-2961184 | None:intergenic | 50.0% | |
| GCTTCCATATCCATGCCTTG+GGG | + | chr7.4:2960795-2960814 | MS.gene78312:CDS | 50.0% | |
| GGCTTCCATATCCATGCCTT+GGG | + | chr7.4:2960794-2960813 | MS.gene78312:CDS | 50.0% | |
| TCTCGGTACTGCTGTATAGG+TGG | + | chr7.4:2962038-2962057 | MS.gene78312:intron | 50.0% | |
| TGGCTTCCATATCCATGCCT+TGG | + | chr7.4:2960793-2960812 | MS.gene78312:CDS | 50.0% | |
| TGTTCACAGATCCCTCTCAC+TGG | + | chr7.4:2961677-2961696 | MS.gene78312:intron | 50.0% | |
| TTACTCTTCGCGGAGACCAA+AGG | - | chr7.4:2960661-2960680 | None:intergenic | 50.0% | |
| ACCATTTGTGGTGTCCCCCA+AGG | - | chr7.4:2960813-2960832 | None:intergenic | 55.0% | |
| ATATGGAAGCCATGGAGGCC+AGG | - | chr7.4:2960785-2960804 | None:intergenic | 55.0% | |
| GCACCGTGCTCCTTACCATT+AGG | - | chr7.4:2961141-2961160 | None:intergenic | 55.0% | |
| GTGAAGGCTGTGGCAGTTCT+TGG | + | chr7.4:2960571-2960590 | MS.gene78312:CDS | 55.0% | |
| TGTCCCCCAAGGCATGGATA+TGG | - | chr7.4:2960802-2960821 | None:intergenic | 55.0% | |
| ! | CACTGTCGGCGATGATGGTA+TGG | + | chr7.4:2961203-2961222 | MS.gene78312:intron | 55.0% |
| GCAGGTCCAACCACTGTGAC+CGG | + | chr7.4:2960740-2960759 | MS.gene78312:intron | 60.0% | |
| GCCTTGGGGGACACCACAAA+TGG | + | chr7.4:2960809-2960828 | MS.gene78312:CDS | 60.0% | |
| GCTGGTGGCAGAGTAGCTTG+TGG | + | chr7.4:2962089-2962108 | MS.gene78312:CDS | 60.0% | |
| GGTCTTAAGCCTGGCCTCCA+TGG | + | chr7.4:2960773-2960792 | MS.gene78312:CDS | 60.0% | |
| TTGTGGTGTCCCCCAAGGCA+TGG | - | chr7.4:2960808-2960827 | None:intergenic | 60.0% | |
| ! | TAAGGAGCACGGTGCCCCTG+AGG | + | chr7.4:2961146-2961165 | MS.gene78312:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 2960568 | 2962435 | 2960568 | ID=MS.gene78312 |
| chr7.4 | mRNA | 2960568 | 2962435 | 2960568 | ID=MS.gene78312.t1;Parent=MS.gene78312 |
| chr7.4 | exon | 2960568 | 2960643 | 2960568 | ID=MS.gene78312.t1.exon1;Parent=MS.gene78312.t1 |
| chr7.4 | CDS | 2960568 | 2960643 | 2960568 | ID=cds.MS.gene78312.t1;Parent=MS.gene78312.t1 |
| chr7.4 | exon | 2960744 | 2960845 | 2960744 | ID=MS.gene78312.t1.exon2;Parent=MS.gene78312.t1 |
| chr7.4 | CDS | 2960744 | 2960845 | 2960744 | ID=cds.MS.gene78312.t1;Parent=MS.gene78312.t1 |
| chr7.4 | exon | 2961124 | 2961219 | 2961124 | ID=MS.gene78312.t1.exon3;Parent=MS.gene78312.t1 |
| chr7.4 | CDS | 2961124 | 2961219 | 2961124 | ID=cds.MS.gene78312.t1;Parent=MS.gene78312.t1 |
| chr7.4 | exon | 2961351 | 2961382 | 2961351 | ID=MS.gene78312.t1.exon4;Parent=MS.gene78312.t1 |
| chr7.4 | CDS | 2961351 | 2961382 | 2961351 | ID=cds.MS.gene78312.t1;Parent=MS.gene78312.t1 |
| chr7.4 | exon | 2961686 | 2961761 | 2961686 | ID=MS.gene78312.t1.exon5;Parent=MS.gene78312.t1 |
| chr7.4 | CDS | 2961686 | 2961761 | 2961686 | ID=cds.MS.gene78312.t1;Parent=MS.gene78312.t1 |
| chr7.4 | exon | 2962057 | 2962110 | 2962057 | ID=MS.gene78312.t1.exon6;Parent=MS.gene78312.t1 |
| chr7.4 | CDS | 2962057 | 2962110 | 2962057 | ID=cds.MS.gene78312.t1;Parent=MS.gene78312.t1 |
| chr7.4 | exon | 2962413 | 2962435 | 2962413 | ID=MS.gene78312.t1.exon7;Parent=MS.gene78312.t1 |
| chr7.4 | CDS | 2962413 | 2962435 | 2962413 | ID=cds.MS.gene78312.t1;Parent=MS.gene78312.t1 |
| Gene Sequence |
| Protein sequence |
