Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene78512 | 0.826949 | 2.05E-54 | -1.69E-46 |
| MS.gene049272 | MS.gene78512 | 0.805964 | 1.04E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene78512 | 0.800879 | 1.17E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene78512 | 0.80102 | 1.10E-48 | -1.69E-46 |
| MS.gene052867 | MS.gene78512 | 0.803863 | 2.85E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene78512 | 0.810082 | 1.38E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene78512 | 0.82262 | 2.15E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene78512 | 0.837706 | 4.44E-57 | -1.69E-46 |
| MS.gene057026 | MS.gene78512 | 0.804572 | 2.03E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene78512 | 0.802825 | 4.67E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene78512 | 0.810034 | 1.41E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene78512 | 0.817162 | 3.81E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene78512 | -0.805113 | 1.56E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAGCTGGAGTCAGATTT+TGG | 0.184824 | 5.1:+60919534 | MS.gene78512:CDS |
| GTCCTAATTTGCAGAATAAA+TGG | 0.187586 | 5.1:+60922076 | MS.gene78512:intron |
| AATTGGATCACAAAGTTAAA+TGG | 0.272678 | 5.1:+60919455 | MS.gene78512:CDS |
| TATGAGAAATTTGTGTATTT+AGG | 0.278442 | 5.1:+60919568 | MS.gene78512:CDS |
| ACCCGTACAGTCTTCTTCTT+AGG | 0.292295 | 5.1:-60922135 | None:intergenic |
| TTCAGCATCAATTCCAAATC+TGG | 0.309760 | 5.1:-60921888 | None:intergenic |
| TTTGGGCAGGCATTGGGCAT+TGG | 0.319761 | 5.1:+60921409 | MS.gene78512:intron |
| TCTACAGTGGACTCCAGATT+TGG | 0.325328 | 5.1:+60921875 | MS.gene78512:intron |
| TGTAAGCTGGCTAGGTCTAA+TGG | 0.330328 | 5.1:+60921195 | MS.gene78512:CDS |
| TTGGGCAGGCATTGGGCATT+GGG | 0.331705 | 5.1:+60921410 | MS.gene78512:intron |
| GTTCGAAAATTGCTGTTAAG+AGG | 0.349529 | 5.1:-60922350 | None:intergenic |
| TTTCCATCGACAGACTTCTT+TGG | 0.350193 | 5.1:+60922254 | MS.gene78512:intron |
| GAAGACGCTGTGGCAGACTA+TGG | 0.357365 | 5.1:+60919502 | MS.gene78512:CDS |
| TTCTGCTGTGCCTGCTGTGA+TGG | 0.363537 | 5.1:+60922308 | MS.gene78512:CDS |
| TGTGTCTTTGGGCAGGCATT+GGG | 0.368874 | 5.1:+60921403 | MS.gene78512:intron |
| CCAGGCTCAGCAGAAGAATT+AGG | 0.378579 | 5.1:-60922282 | None:intergenic |
| TAAATCAGAATCCATCCTTA+AGG | 0.383863 | 5.1:+60921950 | MS.gene78512:CDS |
| GTAAGCTGGCTAGGTCTAAT+GGG | 0.391663 | 5.1:+60921196 | MS.gene78512:CDS |
| GAAGTCTGTGGCATTGGAAT+TGG | 0.392646 | 5.1:+60919438 | MS.gene78512:CDS |
| AATTTGTGTATTTAGGCATT+GGG | 0.396459 | 5.1:+60919575 | MS.gene78512:CDS |
| TCCTAATTTGCAGAATAAAT+GGG | 0.404078 | 5.1:+60922077 | MS.gene78512:intron |
| AAATTTGTGTATTTAGGCAT+TGG | 0.429814 | 5.1:+60919574 | MS.gene78512:CDS |
| GGGAAGCCCGTCAGCTAGCT+AGG | 0.436166 | 5.1:+60921274 | MS.gene78512:CDS |
| CAAGATGAAGTCTGTGGCAT+TGG | 0.445821 | 5.1:+60919432 | MS.gene78512:CDS |
| CTTGTCTGCTGCAGCTTAAG+TGG | 0.445957 | 5.1:+60921166 | MS.gene78512:intron |
| GGCTAGGTCTAATGGGTTTG+AGG | 0.450577 | 5.1:+60921203 | MS.gene78512:CDS |
| CCTAATTCTTCTGCTGAGCC+TGG | 0.453232 | 5.1:+60922282 | MS.gene78512:CDS |
| CTAGGTCTAATGCAGGGACT+CGG | 0.461461 | 5.1:+60921292 | MS.gene78512:CDS |
| AGCCAAAATCTGACTCCAGC+TGG | 0.478708 | 5.1:-60919536 | None:intergenic |
| GAGCAAAATCAACATCCTTA+AGG | 0.503039 | 5.1:-60921965 | None:intergenic |
| GGGAAGCTTGTAAGCTGGCT+AGG | 0.506798 | 5.1:+60921187 | MS.gene78512:CDS |
| GCAGGCACAGCAGAAGTACC+AGG | 0.511520 | 5.1:-60922300 | None:intergenic |
| TAGGTCTAATGCAGGGACTC+GGG | 0.513819 | 5.1:+60921293 | MS.gene78512:CDS |
| TACTGCGAATGCAGGTATCA+AGG | 0.530740 | 5.1:+60922380 | MS.gene78512:CDS |
| CATTGGGGAACGTGAACTAA+AGG | 0.533880 | 5.1:+60919591 | MS.gene78512:CDS |
| CAGATGGTTACTGCGAATGC+AGG | 0.537426 | 5.1:+60922372 | MS.gene78512:CDS |
| ATCCTAAGAAGAAGACTGTA+CGG | 0.543822 | 5.1:+60922133 | MS.gene78512:CDS |
| TTGTCTGCTGCAGCTTAAGT+GGG | 0.549453 | 5.1:+60921167 | MS.gene78512:intron |
| ATGGATCTGATGACTCCAGC+TGG | 0.553415 | 5.1:+60919521 | MS.gene78512:CDS |
| CAGCTAGCTAGGTCTAATGC+AGG | 0.557805 | 5.1:+60921285 | MS.gene78512:CDS |
| AAAAGCACAAAAGCTGAAGA+GGG | 0.560388 | 5.1:+60921254 | MS.gene78512:CDS |
| GTTAAGAGGTTCACAACAGC+AGG | 0.566554 | 5.1:-60922336 | None:intergenic |
| CCTAATTTGCAGAATAAATG+GGG | 0.566683 | 5.1:+60922078 | MS.gene78512:intron |
| CATCATGAGTCCATTTGTGA+AGG | 0.572977 | 5.1:-60921989 | None:intergenic |
| AAAATCAACATCCTTAAGGA+TGG | 0.578151 | 5.1:-60921961 | None:intergenic |
| GCAGGCACATCCATCACAGC+AGG | 0.580554 | 5.1:-60922318 | None:intergenic |
| AAAGATGCAGTAGATATACA+TGG | 0.585581 | 5.1:+60921909 | MS.gene78512:CDS |
| CATTGGGAAACGTGAACCAA+AGG | 0.594101 | 5.1:+60921426 | MS.gene78512:CDS |
| ATCATGAGTCCATTTGTGAA+GGG | 0.594860 | 5.1:-60921988 | None:intergenic |
| TCCTAAGAAGAAGACTGTAC+GGG | 0.599111 | 5.1:+60922134 | MS.gene78512:CDS |
| TAAGTGGGAAGCTTGTAAGC+TGG | 0.605300 | 5.1:+60921182 | MS.gene78512:CDS |
| ATGGACTCATGATGCACTGA+GGG | 0.605994 | 5.1:+60921998 | MS.gene78512:CDS |
| ATTTGTGTATTTAGGCATTG+GGG | 0.609636 | 5.1:+60919576 | MS.gene78512:CDS |
| TGCAGTAGATATACATGGGG+AGG | 0.612105 | 5.1:+60921914 | MS.gene78512:CDS |
| GGTTAATGAAAACATCAGAA+AGG | 0.612698 | 5.1:+60922155 | MS.gene78512:CDS |
| AGGTCTAATGCAGGGACTCG+GGG | 0.616145 | 5.1:+60921294 | MS.gene78512:CDS |
| GTCTCTGCTTGAAGACGCTG+TGG | 0.621674 | 5.1:+60919492 | MS.gene78512:CDS |
| TCATGAGTCCATTTGTGAAG+GGG | 0.624080 | 5.1:-60921987 | None:intergenic |
| CATTAGACCTAGCTAGCTGA+CGG | 0.635381 | 5.1:-60921281 | None:intergenic |
| AAGATGCAGTAGATATACAT+GGG | 0.637221 | 5.1:+60921910 | MS.gene78512:CDS |
| ATTAGACCTAGCTAGCTGAC+GGG | 0.642091 | 5.1:-60921280 | None:intergenic |
| AGCTAGCTAGGTCTAATGCA+GGG | 0.656329 | 5.1:+60921286 | MS.gene78512:CDS |
| CTAATTTGCAGAATAAATGG+GGG | 0.682270 | 5.1:+60922079 | MS.gene78512:intron |
| AGATCGCAAGATGAAGTCTG+TGG | 0.683681 | 5.1:+60919426 | MS.gene78512:CDS |
| AGATGCAGTAGATATACATG+GGG | 0.716090 | 5.1:+60921911 | MS.gene78512:CDS |
| AATGGACTCATGATGCACTG+AGG | 0.724301 | 5.1:+60921997 | MS.gene78512:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATTTTTTACCTTT+GGG | - | chr5.1:60921338-60921357 | None:intergenic | 10.0% |
| !!! | TTTATTTTATTTTTTACCTT+TGG | - | chr5.1:60921339-60921358 | None:intergenic | 10.0% |
| !! | AATAAACAAACTACTATATA+TGG | + | chr5.1:60921353-60921372 | MS.gene78512:intron | 15.0% |
| !! | AATTGTTATAGATTAATTAG+TGG | + | chr5.1:60920837-60920856 | MS.gene78512:intron | 15.0% |
| !! | TTGAATTATTTGATAGAAAA+TGG | + | chr5.1:60921754-60921773 | MS.gene78512:intron | 15.0% |
| !!! | ATAAGTTTTAAAAATACAGA+TGG | + | chr5.1:60922187-60922206 | MS.gene78512:intron | 15.0% |
| !!! | TAAGTTTTAAAAATACAGAT+GGG | + | chr5.1:60922188-60922207 | MS.gene78512:intron | 15.0% |
| !!! | TATTTTATTTTTTACCTTTG+GGG | - | chr5.1:60921337-60921356 | None:intergenic | 15.0% |
| !! | TATAAAAAAGAACATAGCTT+GGG | + | chr5.1:60919963-60919982 | MS.gene78512:intron | 20.0% |
| !! | TATGAGAAATTTGTGTATTT+AGG | + | chr5.1:60919568-60919587 | MS.gene78512:CDS | 20.0% |
| !!! | AAATGTGTTTAAGATTGAAA+AGG | - | chr5.1:60920126-60920145 | None:intergenic | 20.0% |
| !!! | AATAAAGCAAGTTAGTTTTT+TGG | - | chr5.1:60920988-60921007 | None:intergenic | 20.0% |
| !!! | ACTAAAAAAAGATAATGGTT+GGG | + | chr5.1:60922104-60922123 | MS.gene78512:CDS | 20.0% |
| !!! | ATTTTGTTATTGGAAAAGAT+TGG | - | chr5.1:60920342-60920361 | None:intergenic | 20.0% |
| !!! | TAATATCGATTCAAAATTTG+AGG | - | chr5.1:60919773-60919792 | None:intergenic | 20.0% |
| !!! | TATTTTCTTCTTCATAACAA+AGG | - | chr5.1:60920447-60920466 | None:intergenic | 20.0% |
| !!! | TGAACAAGTTATTTTGTTAT+TGG | - | chr5.1:60920352-60920371 | None:intergenic | 20.0% |
| !!! | TGGTTCTTAAATTTAGTTTA+TGG | - | chr5.1:60920531-60920550 | None:intergenic | 20.0% |
| !!! | TTTACTTTTTATACGTGAAT+TGG | + | chr5.1:60919657-60919676 | MS.gene78512:intron | 20.0% |
| ! | AAACAAACTATCTATCTATG+AGG | + | chr5.1:60921808-60921827 | MS.gene78512:intron | 25.0% |
| ! | AAATTTGTGTATTTAGGCAT+TGG | + | chr5.1:60919574-60919593 | MS.gene78512:CDS | 25.0% |
| ! | AACAAACTATCTATCTATGA+GGG | + | chr5.1:60921809-60921828 | MS.gene78512:intron | 25.0% |
| ! | AATTGGATCACAAAGTTAAA+TGG | + | chr5.1:60919455-60919474 | MS.gene78512:CDS | 25.0% |
| ! | AATTTGTGTATTTAGGCATT+GGG | + | chr5.1:60919575-60919594 | MS.gene78512:CDS | 25.0% |
| ! | AGAAAAACACTATAATGAGA+AGG | - | chr5.1:60922041-60922060 | None:intergenic | 25.0% |
| ! | ATATGAAAATTACATGAACC+TGG | + | chr5.1:60921614-60921633 | MS.gene78512:intron | 25.0% |
| ! | ATTGAATGAAAAATGAACAC+AGG | + | chr5.1:60920802-60920821 | MS.gene78512:intron | 25.0% |
| ! | ATTGTGTATAATAGCTAGAA+TGG | - | chr5.1:60919857-60919876 | None:intergenic | 25.0% |
| ! | GATTAAAATGCTATCTATGA+TGG | + | chr5.1:60921776-60921795 | MS.gene78512:intron | 25.0% |
| ! | GTATAAAAAAGAACATAGCT+TGG | + | chr5.1:60919962-60919981 | MS.gene78512:intron | 25.0% |
| ! | TGTGATTGATTAGAATGTTA+AGG | + | chr5.1:60921057-60921076 | MS.gene78512:intron | 25.0% |
| !! | AAACTTTTTGAATTATGCCT+CGG | + | chr5.1:60920778-60920797 | MS.gene78512:intron | 25.0% |
| !! | ATATGACATTTTGTTGCAAT+TGG | - | chr5.1:60920413-60920432 | None:intergenic | 25.0% |
| !! | GACTAAAAAAAGATAATGGT+TGG | + | chr5.1:60922103-60922122 | MS.gene78512:CDS | 25.0% |
| !! | GTAGTTTACTATTAGTTTGA+TGG | + | chr5.1:60921022-60921041 | MS.gene78512:intron | 25.0% |
| !! | TAATCATTCATTTGTTGCAA+AGG | + | chr5.1:60920013-60920032 | MS.gene78512:intron | 25.0% |
| !! | TATCTGTTCTGATTTTTACA+TGG | + | chr5.1:60921849-60921868 | MS.gene78512:intron | 25.0% |
| !! | TCCTAATTTGCAGAATAAAT+GGG | + | chr5.1:60922077-60922096 | MS.gene78512:intron | 25.0% |
| !! | TGTTCTAATTTTGTGTCTTT+GGG | + | chr5.1:60921392-60921411 | MS.gene78512:intron | 25.0% |
| !! | TTGTTCTAATTTTGTGTCTT+TGG | + | chr5.1:60921391-60921410 | MS.gene78512:intron | 25.0% |
| !!! | GTTTATGGTTTTTTTGTTGT+AGG | - | chr5.1:60920516-60920535 | None:intergenic | 25.0% |
| !!! | TTATTTTTACCTTGCTCAAA+AGG | - | chr5.1:60921559-60921578 | None:intergenic | 25.0% |
| AAAATCAACATCCTTAAGGA+TGG | - | chr5.1:60921964-60921983 | None:intergenic | 30.0% | |
| AAAGATGCAGTAGATATACA+TGG | + | chr5.1:60921909-60921928 | MS.gene78512:CDS | 30.0% | |
| AAGATGCAGTAGATATACAT+GGG | + | chr5.1:60921910-60921929 | MS.gene78512:CDS | 30.0% | |
| ACACTATAATGAGAAGGAAA+AGG | - | chr5.1:60922035-60922054 | None:intergenic | 30.0% | |
| CTAACATAGTACTTTAACAG+AGG | + | chr5.1:60920220-60920239 | MS.gene78512:intron | 30.0% | |
| CTACAGTGAAGAAATGAAAT+CGG | - | chr5.1:60920081-60920100 | None:intergenic | 30.0% | |
| GCAACAAATGAATGATTAAC+AGG | - | chr5.1:60920011-60920030 | None:intergenic | 30.0% | |
| GGGAGACTAAAAAAAGATAA+TGG | + | chr5.1:60922099-60922118 | MS.gene78512:CDS | 30.0% | |
| GGTTAATGAAAACATCAGAA+AGG | + | chr5.1:60922155-60922174 | MS.gene78512:CDS | 30.0% | |
| TAAATCAGAATCCATCCTTA+AGG | + | chr5.1:60921950-60921969 | MS.gene78512:CDS | 30.0% | |
| TTCTTCTTCTTCTTCTTTGT+TGG | - | chr5.1:60920551-60920570 | None:intergenic | 30.0% | |
| TTGTGATGATTAGAAGGTTA+AGG | + | chr5.1:60921713-60921732 | MS.gene78512:intron | 30.0% | |
| TTTAAAAATACAGATGGGAC+TGG | + | chr5.1:60922193-60922212 | MS.gene78512:intron | 30.0% | |
| ! | AAAAAGATAATGGTTGGGTT+AGG | + | chr5.1:60922109-60922128 | MS.gene78512:CDS | 30.0% |
| ! | ATAGCTAGAATGGATTCATT+TGG | - | chr5.1:60919847-60919866 | None:intergenic | 30.0% |
| ! | ATTTGTGTATTTAGGCATTG+GGG | + | chr5.1:60919576-60919595 | MS.gene78512:CDS | 30.0% |
| ! | CCTAATTTGCAGAATAAATG+GGG | + | chr5.1:60922078-60922097 | MS.gene78512:intron | 30.0% |
| ! | CTAATTTGCAGAATAAATGG+GGG | + | chr5.1:60922079-60922098 | MS.gene78512:intron | 30.0% |
| ! | GTCCTAATTTGCAGAATAAA+TGG | + | chr5.1:60922076-60922095 | MS.gene78512:intron | 30.0% |
| ! | TTTTACATGGTATTCTACAG+TGG | + | chr5.1:60921862-60921881 | MS.gene78512:intron | 30.0% |
| !! | TCATTTTTCATTCAATACCG+AGG | - | chr5.1:60920798-60920817 | None:intergenic | 30.0% |
| !!! | AAGTTAGTTTTTTGGCAAGT+TGG | - | chr5.1:60920980-60920999 | None:intergenic | 30.0% |
| !!! | TCGCAGCAACATTTTTTTAT+AGG | - | chr5.1:60919933-60919952 | None:intergenic | 30.0% |
| AATCATTGAAAAAGCCCCAA+AGG | + | chr5.1:60921320-60921339 | MS.gene78512:CDS | 35.0% | |
| AGAAGAGAGCAAATTACCTT+TGG | - | chr5.1:60921445-60921464 | None:intergenic | 35.0% | |
| AGATGCAGTAGATATACATG+GGG | + | chr5.1:60921911-60921930 | MS.gene78512:CDS | 35.0% | |
| AGATTGGAAGAGATAAGGAT+CGG | - | chr5.1:60920326-60920345 | None:intergenic | 35.0% | |
| AGGAGGATATTTGTTCTATG+TGG | - | chr5.1:60920288-60920307 | None:intergenic | 35.0% | |
| ATCATGAGTCCATTTGTGAA+GGG | - | chr5.1:60921991-60922010 | None:intergenic | 35.0% | |
| ATCCTAAGAAGAAGACTGTA+CGG | + | chr5.1:60922133-60922152 | MS.gene78512:CDS | 35.0% | |
| CAAAGCTGGATATTTGTTCT+AGG | - | chr5.1:60920260-60920279 | None:intergenic | 35.0% | |
| CCCCATTTATTCTGCAAATT+AGG | - | chr5.1:60922081-60922100 | None:intergenic | 35.0% | |
| GAGCAAAATCAACATCCTTA+AGG | - | chr5.1:60921968-60921987 | None:intergenic | 35.0% | |
| GGAAAAGATTGGAAGAGATA+AGG | - | chr5.1:60920331-60920350 | None:intergenic | 35.0% | |
| TTCAGCATCAATTCCAAATC+TGG | - | chr5.1:60921891-60921910 | None:intergenic | 35.0% | |
| ! | AAAAAGCACAAAAGCTGAAG+AGG | + | chr5.1:60921253-60921272 | MS.gene78512:CDS | 35.0% |
| ! | AAAAGCACAAAAGCTGAAGA+GGG | + | chr5.1:60921254-60921273 | MS.gene78512:CDS | 35.0% |
| ! | AACAGCAATTTTCGAACAGA+TGG | + | chr5.1:60922356-60922375 | MS.gene78512:CDS | 35.0% |
| ! | ATGGATTCATTTGGTGATAG+AGG | - | chr5.1:60919838-60919857 | None:intergenic | 35.0% |
| ! | GACATTTTGTTGCAATTGGA+GGG | - | chr5.1:60920409-60920428 | None:intergenic | 35.0% |
| ! | GGAAATTGTGACTCTTTTGA+AGG | + | chr5.1:60922401-60922420 | MS.gene78512:CDS | 35.0% |
| ! | GTTCGAAAATTGCTGTTAAG+AGG | - | chr5.1:60922353-60922372 | None:intergenic | 35.0% |
| ! | TGACATTTTGTTGCAATTGG+AGG | - | chr5.1:60920410-60920429 | None:intergenic | 35.0% |
| ! | TGCTGTTTGTGATGATTAGA+AGG | + | chr5.1:60921707-60921726 | MS.gene78512:intron | 35.0% |
| ! | TTATTCATGCCTTTTGAGCA+AGG | + | chr5.1:60921547-60921566 | MS.gene78512:intron | 35.0% |
| ! | TTGAAAAGGAAAAGCACACA+TGG | - | chr5.1:60920112-60920131 | None:intergenic | 35.0% |
| ! | TTGGGTTGTTTGAGTAAGTT+AGG | + | chr5.1:60919981-60920000 | MS.gene78512:intron | 35.0% |
| ! | TTTTCATTATCTCCCAAACC+TGG | + | chr5.1:60919879-60919898 | MS.gene78512:intron | 35.0% |
| ! | TTTTCTCTATCTCCAGGTTT+GGG | - | chr5.1:60919894-60919913 | None:intergenic | 35.0% |
| AAGATGCCAAAGGTAGAGAT+AGG | + | chr5.1:60920569-60920588 | MS.gene78512:intron | 40.0% | |
| AGAAGAAGAAGAAGCTACAC+TGG | + | chr5.1:60920620-60920639 | MS.gene78512:intron | 40.0% | |
| CATCATGAGTCCATTTGTGA+AGG | - | chr5.1:60921992-60922011 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGATGCCAA+AGG | + | chr5.1:60920559-60920578 | MS.gene78512:intron | 40.0% | |
| TCAACGTTGTATGGTGTGAA+TGG | + | chr5.1:60920646-60920665 | MS.gene78512:intron | 40.0% | |
| TCATGAGTCCATTTGTGAAG+GGG | - | chr5.1:60921990-60922009 | None:intergenic | 40.0% | |
| TCCTAAGAAGAAGACTGTAC+GGG | + | chr5.1:60922134-60922153 | MS.gene78512:CDS | 40.0% | |
| TTTCCATCGACAGACTTCTT+TGG | + | chr5.1:60922254-60922273 | MS.gene78512:intron | 40.0% | |
| ! | ATTTTGCTCCCCTTCACAAA+TGG | + | chr5.1:60921979-60921998 | MS.gene78512:CDS | 40.0% |
| ! | CTAATTTTGTGTCTTTGGGC+AGG | + | chr5.1:60921396-60921415 | MS.gene78512:intron | 40.0% |
| ! | CTTTTCTCTATCTCCAGGTT+TGG | - | chr5.1:60919895-60919914 | None:intergenic | 40.0% |
| ! | TTGAGCTTTTCTCTATCTCC+AGG | - | chr5.1:60919900-60919919 | None:intergenic | 40.0% |
| !!! | CACTGGTTTTCAACGTTGTA+TGG | + | chr5.1:60920637-60920656 | MS.gene78512:intron | 40.0% |
| ACCCGTACAGTCTTCTTCTT+AGG | - | chr5.1:60922138-60922157 | None:intergenic | 45.0% | |
| ACCTGGCTACATGAACTTGA+AGG | + | chr5.1:60921631-60921650 | MS.gene78512:intron | 45.0% | |
| ACGTTGTATGGTGTGAATGG+AGG | + | chr5.1:60920649-60920668 | MS.gene78512:intron | 45.0% | |
| AGATCGCAAGATGAAGTCTG+TGG | + | chr5.1:60919426-60919445 | MS.gene78512:CDS | 45.0% | |
| AGCTAGCTAGGTCTAATGCA+GGG | + | chr5.1:60921286-60921305 | MS.gene78512:CDS | 45.0% | |
| ATGCCAAAGGTAGAGATAGG+TGG | + | chr5.1:60920572-60920591 | MS.gene78512:intron | 45.0% | |
| ATGGACTCATGATGCACTGA+GGG | + | chr5.1:60921998-60922017 | MS.gene78512:CDS | 45.0% | |
| ATGGTGTGAATGGAGGGAAA+TGG | + | chr5.1:60920656-60920675 | MS.gene78512:intron | 45.0% | |
| ATTAGACCTAGCTAGCTGAC+GGG | - | chr5.1:60921283-60921302 | None:intergenic | 45.0% | |
| CAAGATGAAGTCTGTGGCAT+TGG | + | chr5.1:60919432-60919451 | MS.gene78512:CDS | 45.0% | |
| CATCCAAAGAAGTCTGTCGA+TGG | - | chr5.1:60922260-60922279 | None:intergenic | 45.0% | |
| CATTAGACCTAGCTAGCTGA+CGG | - | chr5.1:60921284-60921303 | None:intergenic | 45.0% | |
| CATTGGGAAACGTGAACCAA+AGG | + | chr5.1:60921426-60921445 | MS.gene78512:CDS | 45.0% | |
| CATTGGGGAACGTGAACTAA+AGG | + | chr5.1:60919591-60919610 | MS.gene78512:CDS | 45.0% | |
| CCTGGCTACATGAACTTGAA+GGG | + | chr5.1:60921632-60921651 | MS.gene78512:intron | 45.0% | |
| CGTTGTATGGTGTGAATGGA+GGG | + | chr5.1:60920650-60920669 | MS.gene78512:intron | 45.0% | |
| GTAAGCTGGCTAGGTCTAAT+GGG | + | chr5.1:60921196-60921215 | MS.gene78512:CDS | 45.0% | |
| GTTAAGAGGTTCACAACAGC+AGG | - | chr5.1:60922339-60922358 | None:intergenic | 45.0% | |
| TAAGTGGGAAGCTTGTAAGC+TGG | + | chr5.1:60921182-60921201 | MS.gene78512:CDS | 45.0% | |
| TACTGCGAATGCAGGTATCA+AGG | + | chr5.1:60922380-60922399 | MS.gene78512:CDS | 45.0% | |
| TCTATGTGGTGACACAAAGC+TGG | - | chr5.1:60920274-60920293 | None:intergenic | 45.0% | |
| TGCAGTAGATATACATGGGG+AGG | + | chr5.1:60921914-60921933 | MS.gene78512:CDS | 45.0% | |
| TGTAAGCTGGCTAGGTCTAA+TGG | + | chr5.1:60921195-60921214 | MS.gene78512:CDS | 45.0% | |
| TTGTCTGCTGCAGCTTAAGT+GGG | + | chr5.1:60921167-60921186 | MS.gene78512:intron | 45.0% | |
| ! | AATACAGATGGGACTGGTAC+TGG | + | chr5.1:60922199-60922218 | MS.gene78512:intron | 45.0% |
| ! | AATGGACTCATGATGCACTG+AGG | + | chr5.1:60921997-60922016 | MS.gene78512:CDS | 45.0% |
| ! | GAAGTCTGTGGCATTGGAAT+TGG | + | chr5.1:60919438-60919457 | MS.gene78512:CDS | 45.0% |
| ! | TCTACAGTGGACTCCAGATT+TGG | + | chr5.1:60921875-60921894 | MS.gene78512:intron | 45.0% |
| AGCCAAAATCTGACTCCAGC+TGG | - | chr5.1:60919539-60919558 | None:intergenic | 50.0% | |
| ATGGATCTGATGACTCCAGC+TGG | + | chr5.1:60919521-60919540 | MS.gene78512:CDS | 50.0% | |
| CACTTAAGCTGCAGCAGACA+AGG | - | chr5.1:60921168-60921187 | None:intergenic | 50.0% | |
| CAGATGGTTACTGCGAATGC+AGG | + | chr5.1:60922372-60922391 | MS.gene78512:CDS | 50.0% | |
| CAGCTAGCTAGGTCTAATGC+AGG | + | chr5.1:60921285-60921304 | MS.gene78512:CDS | 50.0% | |
| CCAAAGGTAGAGATAGGTGG+TGG | + | chr5.1:60920575-60920594 | MS.gene78512:intron | 50.0% | |
| CCACCACCTATCTCTACCTT+TGG | - | chr5.1:60920578-60920597 | None:intergenic | 50.0% | |
| CCAGGCTCAGCAGAAGAATT+AGG | - | chr5.1:60922285-60922304 | None:intergenic | 50.0% | |
| CCTAATTCTTCTGCTGAGCC+TGG | + | chr5.1:60922282-60922301 | MS.gene78512:CDS | 50.0% | |
| CTAGGTCTAATGCAGGGACT+CGG | + | chr5.1:60921292-60921311 | MS.gene78512:CDS | 50.0% | |
| CTTGTCTGCTGCAGCTTAAG+TGG | + | chr5.1:60921166-60921185 | MS.gene78512:intron | 50.0% | |
| GGAAGAGATAAGGATCGGCT+GGG | - | chr5.1:60920321-60920340 | None:intergenic | 50.0% | |
| TAGGTCTAATGCAGGGACTC+GGG | + | chr5.1:60921293-60921312 | MS.gene78512:CDS | 50.0% | |
| TGGAAGAGATAAGGATCGGC+TGG | - | chr5.1:60920322-60920341 | None:intergenic | 50.0% | |
| TGTGTCTTTGGGCAGGCATT+GGG | + | chr5.1:60921403-60921422 | MS.gene78512:intron | 50.0% | |
| TTGTGTCTTTGGGCAGGCAT+TGG | + | chr5.1:60921402-60921421 | MS.gene78512:intron | 50.0% | |
| ! | AAGGTAGAGATAGGTGGTGG+AGG | + | chr5.1:60920578-60920597 | MS.gene78512:intron | 50.0% |
| ! | ATCGGCTGGGTTGACAAAGA+AGG | - | chr5.1:60920308-60920327 | None:intergenic | 50.0% |
| ! | CCCTTCAAGTTCATGTAGCC+AGG | - | chr5.1:60921635-60921654 | None:intergenic | 50.0% |
| ! | CTCCAGCTGGAGTCAGATTT+TGG | + | chr5.1:60919534-60919553 | MS.gene78512:CDS | 50.0% |
| !! | GGCTAGGTCTAATGGGTTTG+AGG | + | chr5.1:60921203-60921222 | MS.gene78512:CDS | 50.0% |
| AGGTCTAATGCAGGGACTCG+GGG | + | chr5.1:60921294-60921313 | MS.gene78512:CDS | 55.0% | |
| GAAGACGCTGTGGCAGACTA+TGG | + | chr5.1:60919502-60919521 | MS.gene78512:CDS | 55.0% | |
| GGGAAGCTTGTAAGCTGGCT+AGG | + | chr5.1:60921187-60921206 | MS.gene78512:CDS | 55.0% | |
| GTCTCTGCTTGAAGACGCTG+TGG | + | chr5.1:60919492-60919511 | MS.gene78512:CDS | 55.0% | |
| TTCTGCTGTGCCTGCTGTGA+TGG | + | chr5.1:60922308-60922327 | MS.gene78512:CDS | 55.0% | |
| ! | GGCTGGGTTGACAAAGAAGG+AGG | - | chr5.1:60920305-60920324 | None:intergenic | 55.0% |
| !! | GTAGAGATAGGTGGTGGAGG+AGG | + | chr5.1:60920581-60920600 | MS.gene78512:intron | 55.0% |
| !! | TTGGGCAGGCATTGGGCATT+GGG | + | chr5.1:60921410-60921429 | MS.gene78512:intron | 55.0% |
| !! | TTTGGGCAGGCATTGGGCAT+TGG | + | chr5.1:60921409-60921428 | MS.gene78512:intron | 55.0% |
| GCAGGCACATCCATCACAGC+AGG | - | chr5.1:60922321-60922340 | None:intergenic | 60.0% | |
| !! | GAGATAGGTGGTGGAGGAGG+AGG | + | chr5.1:60920584-60920603 | MS.gene78512:intron | 60.0% |
| !! | GCAGGCACAGCAGAAGTACC+AGG | - | chr5.1:60922303-60922322 | None:intergenic | 60.0% |
| GGGAAGCCCGTCAGCTAGCT+AGG | + | chr5.1:60921274-60921293 | MS.gene78512:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 60919421 | 60922434 | 60919421 | ID=MS.gene78512 |
| chr5.1 | mRNA | 60919421 | 60922434 | 60919421 | ID=MS.gene78512.t1;Parent=MS.gene78512 |
| chr5.1 | exon | 60919421 | 60919612 | 60919421 | ID=MS.gene78512.t1.exon1;Parent=MS.gene78512.t1 |
| chr5.1 | CDS | 60919421 | 60919612 | 60919421 | ID=cds.MS.gene78512.t1;Parent=MS.gene78512.t1 |
| chr5.1 | exon | 60921180 | 60921341 | 60921180 | ID=MS.gene78512.t1.exon2;Parent=MS.gene78512.t1 |
| chr5.1 | CDS | 60921180 | 60921341 | 60921180 | ID=cds.MS.gene78512.t1;Parent=MS.gene78512.t1 |
| chr5.1 | exon | 60921418 | 60921447 | 60921418 | ID=MS.gene78512.t1.exon3;Parent=MS.gene78512.t1 |
| chr5.1 | CDS | 60921418 | 60921447 | 60921418 | ID=cds.MS.gene78512.t1;Parent=MS.gene78512.t1 |
| chr5.1 | exon | 60921882 | 60922019 | 60921882 | ID=MS.gene78512.t1.exon4;Parent=MS.gene78512.t1 |
| chr5.1 | CDS | 60921882 | 60922019 | 60921882 | ID=cds.MS.gene78512.t1;Parent=MS.gene78512.t1 |
| chr5.1 | exon | 60922090 | 60922176 | 60922090 | ID=MS.gene78512.t1.exon5;Parent=MS.gene78512.t1 |
| chr5.1 | CDS | 60922090 | 60922176 | 60922090 | ID=cds.MS.gene78512.t1;Parent=MS.gene78512.t1 |
| chr5.1 | exon | 60922267 | 60922434 | 60922267 | ID=MS.gene78512.t1.exon6;Parent=MS.gene78512.t1 |
| chr5.1 | CDS | 60922267 | 60922434 | 60922267 | ID=cds.MS.gene78512.t1;Parent=MS.gene78512.t1 |
| Gene Sequence |
| Protein sequence |
