AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78554

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78554.t1 MTR_5g077770 97.160 493 14 0 1 493 321 813 0.0 991
MS.gene78554.t1 MTR_4g113530 32.373 451 287 7 3 438 280 727 5.82e-68 234
MS.gene78554.t1 MTR_3g107720 30.787 445 298 5 3 438 298 741 3.52e-59 209
MS.gene78554.t1 MTR_1g011755 31.605 405 256 7 3 398 284 676 6.58e-54 194
MS.gene78554.t1 MTR_2g006870 26.863 510 348 9 3 493 303 806 7.72e-50 182
MS.gene78554.t1 MTR_2g019530 34.928 209 134 2 3 209 287 495 1.64e-32 132
MS.gene78554.t1 MTR_3g108320 33.784 222 142 5 3 221 283 502 2.49e-32 130
MS.gene78554.t1 MTR_3g108320 33.784 222 142 5 3 221 283 502 2.87e-32 130
MS.gene78554.t1 MTR_3g108320 33.784 222 142 5 3 221 283 502 3.88e-32 130
MS.gene78554.t1 MTR_8g046440 30.622 209 142 3 3 209 75 282 2.10e-25 107
MS.gene78554.t1 MTR_8g446430 30.734 218 145 4 3 215 276 492 2.78e-24 107
MS.gene78554.t1 MTR_2g017825 42.857 105 59 1 321 425 28 131 4.03e-17 82.0
MS.gene78554.t1 MTR_2g017825 32.407 108 73 0 218 325 21 128 2.21e-12 67.8
MS.gene78554.t1 MTR_2g017825 42.857 105 59 1 321 425 28 131 7.04e-17 82.0
MS.gene78554.t1 MTR_2g017825 32.407 108 73 0 218 325 21 128 2.91e-12 68.2
MS.gene78554.t1 MTR_2g017825 42.857 105 59 1 321 425 28 131 7.34e-17 82.4
MS.gene78554.t1 MTR_2g017825 32.407 108 73 0 218 325 21 128 3.69e-12 68.2
MS.gene78554.t1 MTR_2g017825 42.857 105 59 1 321 425 28 131 8.58e-17 82.0
MS.gene78554.t1 MTR_2g017825 32.407 108 73 0 218 325 21 128 3.31e-12 68.2
MS.gene78554.t1 MTR_2g017825 44.211 95 53 0 331 425 37 131 1.65e-16 82.0
MS.gene78554.t1 MTR_2g017825 32.407 108 73 0 218 325 21 128 4.37e-12 68.6
MS.gene78554.t1 MTR_2g017825 44.211 95 53 0 331 425 37 131 1.87e-16 82.0
MS.gene78554.t1 MTR_2g017825 32.407 108 73 0 218 325 21 128 4.67e-12 68.6
MS.gene78554.t1 MTR_4g113370 23.188 207 154 3 5 207 21 226 6.79e-16 77.8
MS.gene78554.t1 MTR_5g022050 36.842 171 102 2 254 418 245 415 1.43e-15 79.3
MS.gene78554.t1 MTR_5g043640 35.897 156 95 2 267 417 53 208 5.21e-15 75.1
MS.gene78554.t1 MTR_5g043640 34.921 126 80 1 246 369 101 226 2.44e-13 70.1
MS.gene78554.t1 MTR_5g023090 32.227 211 137 2 214 418 239 449 9.31e-14 73.9
MS.gene78554.t1 MTR_6g027840 31.288 163 98 3 259 417 297 449 1.52e-13 73.2
MS.gene78554.t1 MTR_6g027840 32.051 156 103 2 265 417 174 329 6.48e-11 65.1
MS.gene78554.t1 MTR_4g092760 30.208 192 130 3 237 424 25 216 7.01e-13 71.2
MS.gene78554.t1 MTR_1g064240 30.000 140 95 2 1 137 381 520 8.59e-13 71.2
MS.gene78554.t1 MTR_4g129470 30.131 229 112 9 243 426 24 249 1.22e-12 70.5
MS.gene78554.t1 MTR_7g115280 29.384 211 144 4 209 417 64 271 3.46e-12 68.9
MS.gene78554.t1 MTR_5g091880 34.375 96 63 0 234 329 49 144 4.11e-12 68.6
MS.gene78554.t1 MTR_5g091880 44.737 76 42 0 343 418 61 136 2.70e-11 65.9
MS.gene78554.t1 MTR_4g116160 31.720 186 123 3 239 420 40 225 5.11e-12 68.6
MS.gene78554.t1 MTR_3g491870 40.449 89 53 0 243 331 245 333 5.20e-12 67.8
MS.gene78554.t1 MTR_1g112830 30.052 193 131 3 232 420 132 324 5.92e-12 68.6
MS.gene78554.t1 MTR_4g116160 31.844 179 118 3 246 420 47 225 1.20e-11 67.4
MS.gene78554.t1 MTR_4g082325 43.023 86 48 1 334 418 20 105 3.45e-11 65.5
MS.gene78554.t1 MTR_2g048680 37.815 119 72 1 287 403 87 205 4.09e-11 63.2
MS.gene78554.t1 MTR_8g088590 30.233 172 105 5 295 461 41 202 5.92e-11 65.1
MS.gene78554.t1 MTR_2g048680 37.815 119 72 1 287 403 167 285 6.67e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78554.t1 AT3G02850 71.255 494 140 2 1 492 313 806 0.0 738
MS.gene78554.t1 AT5G37500 66.333 499 161 4 1 492 296 794 0.0 688
MS.gene78554.t1 AT5G37500 63.532 521 161 5 1 492 296 816 0.0 676
MS.gene78554.t1 AT5G37500 63.532 521 161 5 1 492 242 762 0.0 676
MS.gene78554.t1 AT3G02850 73.488 430 113 1 1 429 313 742 0.0 667
MS.gene78554.t1 AT5G37500 66.826 419 116 2 1 396 296 714 0.0 573
MS.gene78554.t1 AT3G02850 76.923 273 62 1 1 272 313 585 4.54e-151 444
MS.gene78554.t1 AT2G26650 32.787 427 273 5 3 419 175 597 4.47e-65 224
MS.gene78554.t1 AT2G25600 32.110 436 288 4 3 431 306 740 8.23e-65 225
MS.gene78554.t1 AT2G26650 32.787 427 273 5 3 419 280 702 1.55e-64 224
MS.gene78554.t1 AT4G32500 31.323 431 284 6 3 424 304 731 8.42e-63 220
MS.gene78554.t1 AT4G22200 27.745 501 324 8 3 492 304 777 1.06e-52 191
MS.gene78554.t1 AT4G18290 35.023 217 133 5 5 215 300 514 2.60e-32 131
MS.gene78554.t1 AT4G18290 35.023 217 133 5 5 215 289 503 2.76e-32 131
MS.gene78554.t1 AT5G46240 34.862 218 136 4 3 215 287 503 1.34e-31 129
MS.gene78554.t1 AT4G32650 33.645 214 130 6 3 209 316 524 2.88e-27 116
MS.gene78554.t1 AT4G32650 33.645 214 130 6 3 209 316 524 3.00e-27 115
MS.gene78554.t1 AT4G32650 33.645 214 130 6 3 209 316 524 3.68e-27 115
MS.gene78554.t1 AT4G22200 28.322 286 178 6 3 272 304 578 1.79e-25 110
MS.gene78554.t1 AT4G18950 46.591 88 47 0 331 418 42 129 1.23e-14 76.3
MS.gene78554.t1 AT4G18950 46.591 88 47 0 331 418 42 129 1.34e-14 76.3
MS.gene78554.t1 AT3G58760 42.593 108 56 3 343 450 60 161 4.49e-14 74.3
MS.gene78554.t1 AT3G58760 42.593 108 56 3 343 450 123 224 8.90e-14 73.6
MS.gene78554.t1 AT3G58760 42.593 108 56 3 343 450 123 224 8.90e-14 73.6
MS.gene78554.t1 AT3G58760 42.593 108 56 3 343 450 60 161 1.00e-13 73.6
MS.gene78554.t1 AT2G14255 29.612 206 141 3 223 424 12 217 1.45e-13 73.6
MS.gene78554.t1 AT3G58760 42.593 108 56 3 343 450 123 224 1.47e-13 73.6
MS.gene78554.t1 AT3G58760 42.593 108 56 3 343 450 123 224 1.47e-13 73.6
MS.gene78554.t1 AT5G20350 30.093 216 147 3 209 420 5 220 1.69e-13 73.6
MS.gene78554.t1 AT2G03430 33.333 156 99 2 267 417 46 201 2.08e-13 70.5
MS.gene78554.t1 AT2G03430 32.877 146 93 2 246 386 94 239 8.57e-12 65.5
MS.gene78554.t1 AT2G03430 34.109 129 80 1 294 417 40 168 1.18e-11 65.1
MS.gene78554.t1 AT3G04710 32.778 180 113 4 242 417 320 495 3.58e-13 72.4
MS.gene78554.t1 AT3G04710 32.778 180 113 4 242 417 96 271 4.82e-13 71.6
MS.gene78554.t1 AT5G66055 40.000 135 77 4 271 402 263 396 1.01e-12 70.5
MS.gene78554.t1 AT3G04710 32.778 180 112 5 242 417 96 270 6.99e-12 67.8
MS.gene78554.t1 AT2G31820 28.571 175 119 4 264 432 254 428 1.08e-11 67.8
MS.gene78554.t1 AT2G31800 30.952 126 84 2 336 461 79 201 4.75e-11 65.5

Find 92 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTTCTTCTTTGTTCTTT+TGG 0.087746 5.1:+60341777 None:intergenic
CATGAGGAATTCTTTCTTCC+TGG 0.186483 5.1:-60344304 MS.gene78554:CDS
TCCCATTTCTATTCGATCTA+AGG 0.234403 5.1:-60345642 MS.gene78554:intron
GGGAACACTGTGCACTTCTT+TGG 0.240600 5.1:+60341816 None:intergenic
CAGATTCTAGCTTTCCAATA+TGG 0.267039 5.1:+60343402 None:intergenic
GATCAAAGACTGAAAAGTTT+AGG 0.268961 5.1:-60345796 MS.gene78554:CDS
TATCAGTACCTGTAATTTCT+TGG 0.280875 5.1:+60341957 None:intergenic
CTTTCATCTTTCAGGTTACT+AGG 0.281282 5.1:-60344330 MS.gene78554:intron
GAGATTCGGATTATCTTAAA+AGG 0.294278 5.1:-60342815 MS.gene78554:CDS
GTTTCATTTGACATGGTTCT+TGG 0.295468 5.1:-60345860 None:intergenic
GGATATCCGTGAACAAATAA+AGG 0.308926 5.1:-60345723 MS.gene78554:CDS
TACCTTAGATCGAATAGAAA+TGG 0.310873 5.1:+60345640 None:intergenic
GAAGAAATGGAATAGTATTA+TGG 0.316456 5.1:-60341764 MS.gene78554:CDS
CTAGAGCGCAACAGCTCATT+TGG 0.327681 5.1:-60343803 MS.gene78554:CDS
CACTGACGCTGCAGTCCTTC+AGG 0.339626 5.1:-60345669 MS.gene78554:CDS
ATCAGTACCTGTAATTTCTT+GGG 0.340308 5.1:+60341958 None:intergenic
CGTAATTTCACAGATAACTT+TGG 0.350102 5.1:-60342963 MS.gene78554:intron
TCAATTACAGTACCTGTCTT+TGG 0.359155 5.1:+60342665 None:intergenic
CCAAAAGAACAAAGAAGAAA+TGG 0.374118 5.1:-60341777 MS.gene78554:CDS
AGAATCTGATCTTGCTTTGA+AGG 0.374486 5.1:-60343387 MS.gene78554:CDS
ATCAAAGACTGAAAAGTTTA+GGG 0.382228 5.1:-60345795 MS.gene78554:CDS
CCTGTAATTTCTTGGGGAAA+AGG 0.384238 5.1:+60341965 None:intergenic
GTAATTTCACAGATAACTTT+GGG 0.384971 5.1:-60342962 MS.gene78554:intron
ATCTGAAGGATTAATCTTCA+TGG 0.398968 5.1:-60342724 MS.gene78554:CDS
CAGGGAAAAGAGTCTATTAG+AGG 0.414386 5.1:-60343452 MS.gene78554:CDS
ATGAGGAATTCTTTCTTCCT+GGG 0.415335 5.1:-60344303 MS.gene78554:CDS
CTGTAATTTCTTGGGGAAAA+GGG 0.418226 5.1:+60341966 None:intergenic
TTGGATCCCACGGATGGAAC+GGG 0.441874 5.1:+60341796 None:intergenic
AGCGGTTGCAAGAGGAGATT+CGG 0.443420 5.1:-60342829 MS.gene78554:CDS
ATATAATGATTACCTCTAGA+AGG 0.448474 5.1:+60343639 None:intergenic
GTCTATTAGAGGTAAGCAAT+TGG 0.450472 5.1:-60343441 MS.gene78554:CDS
TCAGACATCACATTCCATAT+TGG 0.453192 5.1:-60343416 MS.gene78554:CDS
CATCATAAAAGTATATATCT+AGG 0.453405 5.1:+60343681 None:intergenic
CTTTGATCCCTTGACTATCA+AGG 0.455450 5.1:+60345811 None:intergenic
CTTCTTTACTTGTTAGAGAA+GGG 0.459052 5.1:-60342893 MS.gene78554:CDS
TATATCTAGGATATTTGAAA+AGG 0.461969 5.1:+60343694 None:intergenic
GTTCTTGGTGCTTACTTGAT+CGG 0.463629 5.1:-60345845 MS.gene78554:CDS
GATATCCGTGAACAAATAAA+GGG 0.468529 5.1:-60345722 MS.gene78554:CDS
GAATAGAAATAAACTTCATA+AGG 0.468958 5.1:-60345744 MS.gene78554:CDS
TTCAGATGCAGCAACATGTA+GGG 0.482589 5.1:+60342740 None:intergenic
TTATGATGGAAGATCACCTT+TGG 0.485561 5.1:-60343285 MS.gene78554:intron
TGCTGCATGCAGAGGATATG+AGG 0.486498 5.1:-60343108 MS.gene78554:CDS
ACACTTCTTCTTATTCATGA+AGG 0.493130 5.1:-60343080 MS.gene78554:CDS
CGTGGCCCTTTATTTGTTCA+CGG 0.497113 5.1:+60345717 None:intergenic
ACCTTAGATCGAATAGAAAT+GGG 0.498449 5.1:+60345641 None:intergenic
AAAACAGCAGCAGAACAGAT+AGG 0.501512 5.1:-60341714 MS.gene78554:CDS
GAAGTAGGCATAGCTGATGA+TGG 0.503447 5.1:-60343848 MS.gene78554:CDS
CTAACAAGTTTGATTCGAGC+TGG 0.507916 5.1:-60343329 MS.gene78554:CDS
GCTTCTTTACTTGTTAGAGA+AGG 0.513509 5.1:-60342894 MS.gene78554:CDS
TTCTTTACTTGTTAGAGAAG+GGG 0.515946 5.1:-60342892 MS.gene78554:CDS
CAGTGTTCCCGTTCCATCCG+TGG 0.517873 5.1:-60341803 MS.gene78554:CDS
GCAAAGTTGTTATTAGAAGC+CGG 0.525156 5.1:-60342702 MS.gene78554:CDS
CTACTTGAAGCAGTTAAGAA+TGG 0.526075 5.1:-60342930 MS.gene78554:CDS
CTTCAGATGCAGCAACATGT+AGG 0.529295 5.1:+60342739 None:intergenic
ACCATCATCTATCCTAAAAG+AGG 0.538159 5.1:+60342869 None:intergenic
TTCTTAACTGCTTCAAGTAG+CGG 0.540123 5.1:+60342933 None:intergenic
TTCGTGTTTGTGAACTGTGT+AGG 0.541275 5.1:-60343739 MS.gene78554:CDS
CTACATGTTGCTGCATCTGA+AGG 0.541279 5.1:-60342738 MS.gene78554:CDS
GTTTCAATGCAGGAGGAAGT+AGG 0.544137 5.1:-60343863 MS.gene78554:intron
TTTGGATCCCACGGATGGAA+CGG 0.544164 5.1:+60341795 None:intergenic
TCGTGTTTGTGAACTGTGTA+GGG 0.545827 5.1:-60343738 MS.gene78554:CDS
AGGATTGTTTATCAATCCGC+AGG 0.546342 5.1:+60343714 None:intergenic
TGTTGCATTATAACTTCCCC+AGG 0.548638 5.1:+60344286 None:intergenic
AGACTGAAAAGTTTAGGGAC+AGG 0.553258 5.1:-60345790 MS.gene78554:CDS
TGATAAAATACAAGAGTCAC+CGG 0.555115 5.1:+60341686 None:intergenic
TCACAAACACGAACAGTATG+TGG 0.557670 5.1:+60343749 None:intergenic
CTCATCCGAGCTTCATCAAG+CGG 0.561492 5.1:+60342049 None:intergenic
CTTGATGAAGCTCGGATGAG+TGG 0.563533 5.1:-60342046 MS.gene78554:CDS
TAGAAGTGCAACAGTTTCCT+CGG 0.570596 5.1:+60343823 None:intergenic
GGTGTAGACATCAACGTCAA+AGG 0.575460 5.1:-60343059 MS.gene78554:intron
AGTGTTCCCGTTCCATCCGT+GGG 0.575764 5.1:-60341802 MS.gene78554:CDS
ATACTCCGCTTGATGAAGCT+CGG 0.576832 5.1:-60342054 MS.gene78554:CDS
ACACGAACAGTATGTGGCTG+AGG 0.585190 5.1:+60343755 None:intergenic
TTATGCTCAGCGGTTGCAAG+AGG 0.591981 5.1:-60342837 MS.gene78554:CDS
CATGACAGCCTTGATAGTCA+AGG 0.595353 5.1:-60345819 MS.gene78554:CDS
AAGTAGGCATAGCTGATGAT+GGG 0.598659 5.1:-60343847 MS.gene78554:CDS
TGAGGAATTCTTTCTTCCTG+GGG 0.600005 5.1:-60344302 MS.gene78554:CDS
ATTAGCTCTTGAATGGTGTG+TGG 0.609110 5.1:+60341738 None:intergenic
CAGGAAGAAAGAATTCCTCA+TGG 0.613827 5.1:+60344305 None:intergenic
ATGACAGCCTTGATAGTCAA+GGG 0.617477 5.1:-60345818 MS.gene78554:CDS
CAGATGCAGCAACATGTAGG+GGG 0.623515 5.1:+60342742 None:intergenic
TCAGTACCTGTAATTTCTTG+GGG 0.633503 5.1:+60341959 None:intergenic
TTTCAAACTGCAAACGCACG+TGG 0.634475 5.1:+60345699 None:intergenic
GTGAACTGTGTAGGGTCCTG+CGG 0.635006 5.1:-60343730 MS.gene78554:CDS
TAGAAATGGGAATATCCTGA+AGG 0.635657 5.1:+60345654 None:intergenic
TAGCATCTTGCTGCATGCAG+AGG 0.635817 5.1:-60343116 MS.gene78554:CDS
TCAGATGCAGCAACATGTAG+GGG 0.646383 5.1:+60342741 None:intergenic
AGTATTAGACAACCTTCTAG+AGG 0.656465 5.1:-60343651 MS.gene78554:intron
CATAGCTGATGATGGGTCCG+AGG 0.664496 5.1:-60343840 MS.gene78554:CDS
TCAGGTTACTAGGCTCCATG+AGG 0.679390 5.1:-60344320 MS.gene78554:intron
AGATGCAGCAACATGTAGGG+GGG 0.701313 5.1:+60342743 None:intergenic
GGGGAAGTTATAATGCAACA+AGG 0.706358 5.1:-60344283 MS.gene78554:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAAGATAAAAAGA+AGG + chr5.1:60345604-60345623 None:intergenic 15.0%
!! ATATATATAGAATATGCTAT+AGG - chr5.1:60345374-60345393 MS.gene78554:intron 15.0%
!!! AAAAAAAAAACGATAAGTTT+TGG + chr5.1:60345424-60345443 None:intergenic 15.0%
!!! ATTAGTATTATCTATACTTT+TGG - chr5.1:60342397-60342416 MS.gene78554:intron 15.0%
!!! TAGATATATACTTTTATGAT+GGG - chr5.1:60343845-60343864 MS.gene78554:CDS 15.0%
!! ATTTCATATTTCACCTATAA+CGG + chr5.1:60345299-60345318 None:intergenic 20.0%
!! GAATAGAAATAAACTTCATA+AGG - chr5.1:60341780-60341799 MS.gene78554:CDS 20.0%
!! TATCTGAAAAAAATGATAGA+TGG + chr5.1:60345680-60345699 None:intergenic 20.0%
!! TGATTTAAATGTTTGTTTGT+AGG - chr5.1:60342727-60342746 MS.gene78554:CDS 20.0%
!!! ATCTAAAACCTTAAAACTAA+GGG - chr5.1:60342459-60342478 MS.gene78554:intron 20.0%
!!! CATCATAAAAGTATATATCT+AGG + chr5.1:60343846-60343865 None:intergenic 20.0%
!!! CTAATATCTCATATTTTACA+GGG - chr5.1:60344054-60344073 MS.gene78554:intron 20.0%
!!! CTAGATATATACTTTTATGA+TGG - chr5.1:60343844-60343863 MS.gene78554:CDS 20.0%
!!! TATATCTAGGATATTTGAAA+AGG + chr5.1:60343833-60343852 None:intergenic 20.0%
!!! TATTTTGTTATTTAGACTCA+AGG - chr5.1:60342520-60342539 MS.gene78554:intron 20.0%
!!! TTCAGGTGAAAATTTAAAAT+TGG - chr5.1:60344950-60344969 MS.gene78554:intron 20.0%
! AAACAACAAAGGTTCTTATT+AGG + chr5.1:60344382-60344401 None:intergenic 25.0%
! AAAGAAAATTCAGCATTATC+CGG + chr5.1:60343455-60343474 None:intergenic 25.0%
! AATATCAGAAACCTGAAATA+TGG + chr5.1:60343364-60343383 None:intergenic 25.0%
! ATATAATGATTACCTCTAGA+AGG + chr5.1:60343888-60343907 None:intergenic 25.0%
! ATATCAGAAACCTGAAATAT+GGG + chr5.1:60343363-60343382 None:intergenic 25.0%
! ATCAAAGACTGAAAAGTTTA+GGG - chr5.1:60341729-60341748 MS.gene78554:CDS 25.0%
! ATGCATAATTATATACTGAG+TGG + chr5.1:60342883-60342902 None:intergenic 25.0%
! ATGGTAGATACTCTATTAAA+GGG + chr5.1:60343929-60343948 None:intergenic 25.0%
! ATTACTAATGTTTCCAAGAA+GGG - chr5.1:60344908-60344927 MS.gene78554:intron 25.0%
! CCTGTAAAATATGAGATATT+AGG + chr5.1:60344056-60344075 None:intergenic 25.0%
! GAAAATTCATCTTTGTTCTT+TGG - chr5.1:60342143-60342162 MS.gene78554:intron 25.0%
! GAAGAAATGGAATAGTATTA+TGG - chr5.1:60345760-60345779 MS.gene78554:CDS 25.0%
! GTAATTTCACAGATAACTTT+GGG - chr5.1:60344562-60344581 MS.gene78554:intron 25.0%
! GTAGAAAACAATAAATCCAA+TGG + chr5.1:60342618-60342637 None:intergenic 25.0%
! GTTATAGGTGAAATATGAAA+TGG - chr5.1:60345298-60345317 MS.gene78554:intron 25.0%
! TAAAAATCTGATAAAGCTAC+TGG - chr5.1:60345504-60345523 MS.gene78554:intron 25.0%
! TGGATTGATAAAAAAGAACT+TGG - chr5.1:60343050-60343069 MS.gene78554:intron 25.0%
! TTATCCTTGAAAGAATTCAA+GGG - chr5.1:60342663-60342682 MS.gene78554:intron 25.0%
! TTCTTCATAATATCTTCCAT+AGG - chr5.1:60343535-60343554 MS.gene78554:intron 25.0%
! TTGTAGAAAGTGAAACAAAT+AGG + chr5.1:60341977-60341996 None:intergenic 25.0%
! TTTATCCTTGAAAGAATTCA+AGG - chr5.1:60342662-60342681 MS.gene78554:intron 25.0%
! TTTATGTTCTTTCATCTTTC+AGG - chr5.1:60343186-60343205 MS.gene78554:intron 25.0%
!! AAAAAAGAACTTGGTAGTAT+GGG - chr5.1:60343059-60343078 MS.gene78554:intron 25.0%
!! AGTATTATCTATACTTTTGG+TGG - chr5.1:60342400-60342419 MS.gene78554:intron 25.0%
!! ATGTACTAAGTTACTCATTT+TGG - chr5.1:60343994-60344013 MS.gene78554:intron 25.0%
!! CCTAATATCTCATATTTTAC+AGG - chr5.1:60344053-60344072 MS.gene78554:intron 25.0%
!! CTTAAAAGGCTTTTATCTTA+TGG - chr5.1:60344723-60344742 MS.gene78554:intron 25.0%
!! GAGGATCAAACTTAAATTTT+AGG - chr5.1:60344517-60344536 MS.gene78554:intron 25.0%
!! GATCTAAAACCTTAAAACTA+AGG - chr5.1:60342458-60342477 MS.gene78554:intron 25.0%
!! TAAAAAAGAACTTGGTAGTA+TGG - chr5.1:60343058-60343077 MS.gene78554:intron 25.0%
!! TCTAAAACCTTAAAACTAAG+GGG - chr5.1:60342460-60342479 MS.gene78554:intron 25.0%
!! TGTCATTTCATACTGATATA+TGG + chr5.1:60342378-60342397 None:intergenic 25.0%
!! TTCTCATAAACACTTTTACA+AGG + chr5.1:60343489-60343508 None:intergenic 25.0%
!! TTTATAACAGCATTTGTTAG+TGG + chr5.1:60344352-60344371 None:intergenic 25.0%
AACAATAAATCCAATGGACA+AGG + chr5.1:60342612-60342631 None:intergenic 30.0%
AACATATAGAGATGAAACGT+AGG + chr5.1:60342095-60342114 None:intergenic 30.0%
AAGGTAATAAGAGAAAGAAG+AGG - chr5.1:60341901-60341920 MS.gene78554:intron 30.0%
ACAACCATAAATGATGCTAA+AGG + chr5.1:60341928-60341947 None:intergenic 30.0%
ACAATAAATCCAATGGACAA+GGG + chr5.1:60342611-60342630 None:intergenic 30.0%
ACACTTCTTCTTATTCATGA+AGG - chr5.1:60344444-60344463 MS.gene78554:intron 30.0%
ACATATAGAGATGAAACGTA+GGG + chr5.1:60342094-60342113 None:intergenic 30.0%
ACCTGAAAACAAGTATGAAA+AGG + chr5.1:60344937-60344956 None:intergenic 30.0%
ACCTTAGATCGAATAGAAAT+GGG + chr5.1:60341886-60341905 None:intergenic 30.0%
ATCAGTACCTGTAATTTCTT+GGG + chr5.1:60345569-60345588 None:intergenic 30.0%
ATCTGAAGGATTAATCTTCA+TGG - chr5.1:60344800-60344819 MS.gene78554:intron 30.0%
ATTTCATACTGATATATGGC+AGG + chr5.1:60342374-60342393 None:intergenic 30.0%
CATGGTAGATACTCTATTAA+AGG + chr5.1:60343930-60343949 None:intergenic 30.0%
CATTACTAATGTTTCCAAGA+AGG - chr5.1:60344907-60344926 MS.gene78554:intron 30.0%
CCAAAAGAACAAAGAAGAAA+TGG - chr5.1:60345747-60345766 MS.gene78554:CDS 30.0%
CGTAATTTCACAGATAACTT+TGG - chr5.1:60344561-60344580 MS.gene78554:intron 30.0%
GAAATTGAAAAATAGCGAAG+TGG + chr5.1:60343332-60343351 None:intergenic 30.0%
GAACAAATATCAACAAGCAT+TGG + chr5.1:60342022-60342041 None:intergenic 30.0%
GAGATTCGGATTATCTTAAA+AGG - chr5.1:60344709-60344728 MS.gene78554:intron 30.0%
GATATCCGTGAACAAATAAA+GGG - chr5.1:60341802-60341821 MS.gene78554:CDS 30.0%
GATCAAAGACTGAAAAGTTT+AGG - chr5.1:60341728-60341747 MS.gene78554:CDS 30.0%
GTTGTCATCGTAAGATTTAT+AGG + chr5.1:60345078-60345097 None:intergenic 30.0%
TACCTTAGATCGAATAGAAA+TGG + chr5.1:60341887-60341906 None:intergenic 30.0%
TAGAAACTCTCGTTAAACAA+AGG + chr5.1:60343119-60343138 None:intergenic 30.0%
TATCAGTACCTGTAATTTCT+TGG + chr5.1:60345570-60345589 None:intergenic 30.0%
TGATAAAATACAAGAGTCAC+CGG + chr5.1:60345841-60345860 None:intergenic 30.0%
TGCTATACGAAAAACAACAA+AGG + chr5.1:60344393-60344412 None:intergenic 30.0%
TTACTAATGTTTCCAAGAAG+GGG - chr5.1:60344909-60344928 MS.gene78554:intron 30.0%
TTACTTTCAAGGTTGAACTT+TGG - chr5.1:60343030-60343049 MS.gene78554:intron 30.0%
TTCAACCTTGAAAGTAAAAG+TGG + chr5.1:60343027-60343046 None:intergenic 30.0%
TTTGTTGAGTAACAAGTGTT+TGG + chr5.1:60342795-60342814 None:intergenic 30.0%
! AAAAACGTTCCTCTTTTTAG+TGG - chr5.1:60342298-60342317 MS.gene78554:intron 30.0%
! AAAAGGGTATGAATACTAGT+AGG + chr5.1:60343417-60343436 None:intergenic 30.0%
! AAATTTAAGTTTGATCCTCG+AGG + chr5.1:60344516-60344535 None:intergenic 30.0%
! AAGGCTTTTATCTTATGGAA+TGG - chr5.1:60344728-60344747 MS.gene78554:intron 30.0%
! ACATTGATCTTTTCGTCAAT+CGG - chr5.1:60342562-60342581 MS.gene78554:intron 30.0%
! AGTGGTAAAGACTGTTATTT+AGG + chr5.1:60342865-60342884 None:intergenic 30.0%
! CAACTATATTTTGTCTGTGA+TGG - chr5.1:60343277-60343296 MS.gene78554:intron 30.0%
! CATAATGCATTTTGAACTCA+TGG + chr5.1:60343948-60343967 None:intergenic 30.0%
! CCATCATAATCTGTCTTTTT+GGG + chr5.1:60344228-60344247 None:intergenic 30.0%
! CCATTTCTTCTTTGTTCTTT+TGG + chr5.1:60345750-60345769 None:intergenic 30.0%
! CTGACTTTTTGCAAATCAAA+CGG + chr5.1:60342690-60342709 None:intergenic 30.0%
! CTTCTTTACTTGTTAGAGAA+GGG - chr5.1:60344631-60344650 MS.gene78554:intron 30.0%
! TCCATCATAATCTGTCTTTT+TGG + chr5.1:60344229-60344248 None:intergenic 30.0%
! TCTATGTTTTCCCATATTTC+AGG - chr5.1:60343350-60343369 MS.gene78554:CDS 30.0%
! TTCTTTACTTGTTAGAGAAG+GGG - chr5.1:60344632-60344651 MS.gene78554:intron 30.0%
! TTTGTTCTCAATTTGTTCAC+TGG - chr5.1:60342035-60342054 MS.gene78554:CDS 30.0%
!! ACCTTTTCATACTTGTTTTC+AGG - chr5.1:60344933-60344952 MS.gene78554:intron 30.0%
!! CTTGATTTGCTATCATATAC+TGG - chr5.1:60345169-60345188 MS.gene78554:intron 30.0%
!! GTTTGATTTGCAAAAAGTCA+GGG - chr5.1:60342689-60342708 MS.gene78554:CDS 30.0%
!!! CGATAAGTTTTGGAATGAAA+AGG + chr5.1:60345414-60345433 None:intergenic 30.0%
!!! TGTTTTGATTAGCTCTTGAA+TGG + chr5.1:60345796-60345815 None:intergenic 30.0%
AAATGCATTATGCTACTCTC+CGG - chr5.1:60343956-60343975 MS.gene78554:intron 35.0%
AACTGTAGGAATAGGTGTAT+AGG - chr5.1:60342813-60342832 MS.gene78554:CDS 35.0%
ACCATCATCTATCCTAAAAG+AGG + chr5.1:60344658-60344677 None:intergenic 35.0%
ACCTATATAGATATTCCTCG+AGG - chr5.1:60344498-60344517 MS.gene78554:intron 35.0%
ACTCAACAAACTGTAGGAAT+AGG - chr5.1:60342805-60342824 MS.gene78554:CDS 35.0%
ACTGATATATGGCAGGAAAT+GGG + chr5.1:60342367-60342386 None:intergenic 35.0%
AGAATCTGATCTTGCTTTGA+AGG - chr5.1:60344137-60344156 MS.gene78554:intron 35.0%
AGGTCCTTTAGCATCATTTA+TGG - chr5.1:60341921-60341940 MS.gene78554:intron 35.0%
AGTATTAGACAACCTTCTAG+AGG - chr5.1:60343873-60343892 MS.gene78554:intron 35.0%
ATGAGGAATTCTTTCTTCCT+GGG - chr5.1:60343221-60343240 MS.gene78554:intron 35.0%
CCCAAAAAGACAGATTATGA+TGG - chr5.1:60344225-60344244 MS.gene78554:intron 35.0%
CTACTTGAAGCAGTTAAGAA+TGG - chr5.1:60344594-60344613 MS.gene78554:intron 35.0%
CTGTAATTTCTTGGGGAAAA+GGG + chr5.1:60345561-60345580 None:intergenic 35.0%
CTTGTTACTCAACAAACTGT+AGG - chr5.1:60342799-60342818 MS.gene78554:CDS 35.0%
GCATCATTTATGGTTGTCTA+TGG - chr5.1:60341931-60341950 MS.gene78554:intron 35.0%
GCATGAATCGGGTAATAAAA+GGG + chr5.1:60343433-60343452 None:intergenic 35.0%
GGATATCCGTGAACAAATAA+AGG - chr5.1:60341801-60341820 MS.gene78554:CDS 35.0%
GTCTATTAGAGGTAAGCAAT+TGG - chr5.1:60344083-60344102 MS.gene78554:intron 35.0%
TACTGATATATGGCAGGAAA+TGG + chr5.1:60342368-60342387 None:intergenic 35.0%
TAGAAATGGGAATATCCTGA+AGG + chr5.1:60341873-60341892 None:intergenic 35.0%
TCAATTACAGTACCTGTCTT+TGG + chr5.1:60344862-60344881 None:intergenic 35.0%
TCAGACATCACATTCCATAT+TGG - chr5.1:60344108-60344127 MS.gene78554:intron 35.0%
TCAGTACCTGTAATTTCTTG+GGG + chr5.1:60345568-60345587 None:intergenic 35.0%
TCATTTCACGCAAAACAGAT+GGG - chr5.1:60345444-60345463 MS.gene78554:intron 35.0%
TCCAAAACAGAACATCAACA+TGG - chr5.1:60345201-60345220 MS.gene78554:CDS 35.0%
TCCCATTTCTATTCGATCTA+AGG - chr5.1:60341882-60341901 MS.gene78554:intron 35.0%
TCCTCGAGGAATATCTATAT+AGG + chr5.1:60344502-60344521 None:intergenic 35.0%
TGGAAAATGTGAACAGAAGA+TGG + chr5.1:60342195-60342214 None:intergenic 35.0%
TTATTCAGCATGCAGAAAAG+AGG + chr5.1:60343085-60343104 None:intergenic 35.0%
TTCATTTCACGCAAAACAGA+TGG - chr5.1:60345443-60345462 MS.gene78554:intron 35.0%
TTCTTAACTGCTTCAAGTAG+CGG + chr5.1:60344594-60344613 None:intergenic 35.0%
TTTGCAAAAAGTCAGGGTAA+TGG - chr5.1:60342695-60342714 MS.gene78554:CDS 35.0%
TTTGGTAAAAACACTAGCTC+CGG + chr5.1:60344844-60344863 None:intergenic 35.0%
! ACCATGTTGATGTTCTGTTT+TGG + chr5.1:60345205-60345224 None:intergenic 35.0%
! AGAGGAACGTTTTTGATGTA+TGG + chr5.1:60342292-60342311 None:intergenic 35.0%
! AGCCAAGTATTTTGTAACCA+GGG + chr5.1:60345349-60345368 None:intergenic 35.0%
! ATCTTTTCGTCAATCGGAAA+TGG - chr5.1:60342568-60342587 MS.gene78554:intron 35.0%
! ATTCTAGAAAACAGTAGCGT+CGG + chr5.1:60345050-60345069 None:intergenic 35.0%
! CAAATTTCTGCTGGAGTTTT+AGG - chr5.1:60342169-60342188 MS.gene78554:intron 35.0%
! GCAAAGTTGTTATTAGAAGC+CGG - chr5.1:60344822-60344841 MS.gene78554:intron 35.0%
! GCTTCTTTACTTGTTAGAGA+AGG - chr5.1:60344630-60344649 MS.gene78554:intron 35.0%
! GTCAATAGAACAGCTTTTGA+TGG - chr5.1:60344159-60344178 MS.gene78554:intron 35.0%
! TCCTGCATTGAAACAGTTTT+GGG + chr5.1:60343655-60343674 None:intergenic 35.0%
! TTATGATGGAAGATCACCTT+TGG - chr5.1:60344239-60344258 MS.gene78554:intron 35.0%
! TTTTATTACCCGATTCATGC+CGG - chr5.1:60343433-60343452 MS.gene78554:CDS 35.0%
! TTTTGTAACCAGGGGAAAAA+TGG + chr5.1:60345340-60345359 None:intergenic 35.0%
!! CAGATTCTAGCTTTCCAATA+TGG + chr5.1:60344125-60344144 None:intergenic 35.0%
!! CGTTTGATTTGCAAAAAGTC+AGG - chr5.1:60342688-60342707 MS.gene78554:CDS 35.0%
!! CTAGTGTTTTTACCAAAGAC+AGG - chr5.1:60344847-60344866 MS.gene78554:intron 35.0%
!! CTTTCATCTTTCAGGTTACT+AGG - chr5.1:60343194-60343213 MS.gene78554:intron 35.0%
!!! ACATTTTCCATGAAAGCATC+TGG - chr5.1:60342205-60342224 MS.gene78554:intron 35.0%
!!! TACTGCCACTTTTACTTTCA+AGG - chr5.1:60343019-60343038 MS.gene78554:intron 35.0%
!!! TCTTTTAGGATAGATGATGG+TGG - chr5.1:60344657-60344676 MS.gene78554:intron 35.0%
!!! TGGTAGTTTTTTATGCTCAG+CGG - chr5.1:60344677-60344696 MS.gene78554:intron 35.0%
!!! TGTTGATCCCCTTAGTTTTA+AGG + chr5.1:60342470-60342489 None:intergenic 35.0%
AAAACAGCAGCAGAACAGAT+AGG - chr5.1:60345810-60345829 MS.gene78554:CDS 40.0%
AACCTAGCACACTAGTGAAT+TGG + chr5.1:60344977-60344996 None:intergenic 40.0%
AAGTAGGCATAGCTGATGAT+GGG - chr5.1:60343677-60343696 MS.gene78554:CDS 40.0%
ACACGCGCAAGAAATGATAA+CGG + chr5.1:60343148-60343167 None:intergenic 40.0%
ACCTAGCACACTAGTGAATT+GGG + chr5.1:60344976-60344995 None:intergenic 40.0%
AGACTGAAAAGTTTAGGGAC+AGG - chr5.1:60341734-60341753 MS.gene78554:CDS 40.0%
AGGATTGTTTATCAATCCGC+AGG + chr5.1:60343813-60343832 None:intergenic 40.0%
AGTCATAGCTTCTGAGTAAC+TGG - chr5.1:60343384-60343403 MS.gene78554:CDS 40.0%
ATATAGCCAACTCCACTTAG+TGG + chr5.1:60345118-60345137 None:intergenic 40.0%
ATGGAAGATCACCTTTGGTA+AGG - chr5.1:60344244-60344263 MS.gene78554:CDS 40.0%
CAAAACTGTTTCAATGCAGG+AGG - chr5.1:60343654-60343673 MS.gene78554:CDS 40.0%
CAGGAAGAAAGAATTCCTCA+TGG + chr5.1:60343222-60343241 None:intergenic 40.0%
CAGGGAAAAGAGTCTATTAG+AGG - chr5.1:60344072-60344091 MS.gene78554:intron 40.0%
CATGAGGAATTCTTTCTTCC+TGG - chr5.1:60343220-60343239 MS.gene78554:intron 40.0%
CATTTCACGCAAAACAGATG+GGG - chr5.1:60345445-60345464 MS.gene78554:intron 40.0%
CCTGTAATTTCTTGGGGAAA+AGG + chr5.1:60345562-60345581 None:intergenic 40.0%
CTACAAACCAGATGCTTTCA+TGG + chr5.1:60342215-60342234 None:intergenic 40.0%
CTGATATATGGCAGGAAATG+GGG + chr5.1:60342366-60342385 None:intergenic 40.0%
CTTTGATCCCTTGACTATCA+AGG + chr5.1:60341716-60341735 None:intergenic 40.0%
GGCATGAATCGGGTAATAAA+AGG + chr5.1:60343434-60343453 None:intergenic 40.0%
GGGGAAGTTATAATGCAACA+AGG - chr5.1:60343241-60343260 MS.gene78554:intron 40.0%
GTTTCCTCTTTGTTGACCTA+TGG + chr5.1:60343554-60343573 None:intergenic 40.0%
TATAGCCAACTCCACTTAGT+GGG + chr5.1:60345117-60345136 None:intergenic 40.0%
TATGAAAAGGTTCCCCTTCT+TGG + chr5.1:60344924-60344943 None:intergenic 40.0%
TCACAAACACGAACAGTATG+TGG + chr5.1:60343778-60343797 None:intergenic 40.0%
TCCCCTGGTTACAAAATACT+TGG - chr5.1:60345344-60345363 MS.gene78554:intron 40.0%
TCGTGTTTGTGAACTGTGTA+GGG - chr5.1:60343786-60343805 MS.gene78554:CDS 40.0%
TCTTCCATAGGTCAACAAAG+AGG - chr5.1:60343547-60343566 MS.gene78554:intron 40.0%
TGAGGAATTCTTTCTTCCTG+GGG - chr5.1:60343222-60343241 MS.gene78554:intron 40.0%
TGTTGCATTATAACTTCCCC+AGG + chr5.1:60343241-60343260 None:intergenic 40.0%
TTCAGATGCAGCAACATGTA+GGG + chr5.1:60344787-60344806 None:intergenic 40.0%
TTCGTGTTTGTGAACTGTGT+AGG - chr5.1:60343785-60343804 MS.gene78554:CDS 40.0%
! ATGACAGCCTTGATAGTCAA+GGG - chr5.1:60341706-60341725 MS.gene78554:CDS 40.0%
! ATTAGCTCTTGAATGGTGTG+TGG + chr5.1:60345789-60345808 None:intergenic 40.0%
! CAGCCAAGTATTTTGTAACC+AGG + chr5.1:60345350-60345369 None:intergenic 40.0%
! CCTTTTCCCCAAGAAATTAC+AGG - chr5.1:60345559-60345578 MS.gene78554:intron 40.0%
! CTAACAAGTTTGATTCGAGC+TGG - chr5.1:60344195-60344214 MS.gene78554:intron 40.0%
! CTCCTGCATTGAAACAGTTT+TGG + chr5.1:60343656-60343675 None:intergenic 40.0%
! CTTTGTTCTTTTGGATCCCA+CGG + chr5.1:60345741-60345760 None:intergenic 40.0%
! GCAGAACAGATAGGATTTTC+CGG - chr5.1:60345819-60345838 MS.gene78554:CDS 40.0%
! GCCAAGTATTTTGTAACCAG+GGG + chr5.1:60345348-60345367 None:intergenic 40.0%
! TAGAAGTGCAACAGTTTCCT+CGG + chr5.1:60343704-60343723 None:intergenic 40.0%
! TTCTAGAAAACAGTAGCGTC+GGG + chr5.1:60345049-60345068 None:intergenic 40.0%
!! ATACTTTTGGTGGCTAAAGC+TGG - chr5.1:60342410-60342429 MS.gene78554:intron 40.0%
!! CTATAACGGACAATCTTGGT+CGG + chr5.1:60345285-60345304 None:intergenic 40.0%
!! GAAGAGCATCCACTAAAAAG+AGG + chr5.1:60342310-60342329 None:intergenic 40.0%
!! GGAAGCTCTCTTTTGCTTTT+TGG - chr5.1:60342431-60342450 MS.gene78554:intron 40.0%
!! GTTCTTGGTGCTTACTTGAT+CGG - chr5.1:60341679-60341698 MS.gene78554:CDS 40.0%
!! TATCAACAAGCATTGGAAGC+AGG + chr5.1:60342015-60342034 None:intergenic 40.0%
!! TCACCTATAACGGACAATCT+TGG + chr5.1:60345289-60345308 None:intergenic 40.0%
!!! GCCTCTTTTAGGATAGATGA+TGG - chr5.1:60344654-60344673 MS.gene78554:intron 40.0%
AACCAGGGGAAAAATGGAGA+AGG + chr5.1:60345334-60345353 None:intergenic 45.0%
AGCATTATCCGGCATGAATC+GGG + chr5.1:60343444-60343463 None:intergenic 45.0%
ATACTCCGCTTGATGAAGCT+CGG - chr5.1:60345470-60345489 MS.gene78554:intron 45.0%
CACATCGTAGATGAAGAGGA+TGG + chr5.1:60344312-60344331 None:intergenic 45.0%
CAGCATTATCCGGCATGAAT+CGG + chr5.1:60343445-60343464 None:intergenic 45.0%
CATCCTCTTCATCTACGATG+TGG - chr5.1:60344310-60344329 MS.gene78554:CDS 45.0%
CCACTTAGTGGGATAAGACT+TGG + chr5.1:60345106-60345125 None:intergenic 45.0%
CGACCAAGATTGTCCGTTAT+AGG - chr5.1:60345283-60345302 MS.gene78554:intron 45.0%
CGGACCCTTGAATTCTTTCA+AGG + chr5.1:60342670-60342689 None:intergenic 45.0%
CGTTTCAAGCTCCTTACCAA+AGG + chr5.1:60344258-60344277 None:intergenic 45.0%
CTACATGTTGCTGCATCTGA+AGG - chr5.1:60344786-60344805 MS.gene78554:intron 45.0%
CTTATCCCACTAAGTGGAGT+TGG - chr5.1:60345109-60345128 MS.gene78554:intron 45.0%
CTTCAGATGCAGCAACATGT+AGG + chr5.1:60344788-60344807 None:intergenic 45.0%
CTTTGGCGACAAATTTCTGC+TGG - chr5.1:60342160-60342179 MS.gene78554:intron 45.0%
GAAGTAGGCATAGCTGATGA+TGG - chr5.1:60343676-60343695 MS.gene78554:CDS 45.0%
GCCCAAAACTGTTTCAATGC+AGG - chr5.1:60343651-60343670 MS.gene78554:intron 45.0%
GGGGATCAACACTTTCTAAC+TGG - chr5.1:60342479-60342498 MS.gene78554:intron 45.0%
GGTGTAGACATCAACGTCAA+AGG - chr5.1:60344465-60344484 MS.gene78554:intron 45.0%
GTTTCAATGCAGGAGGAAGT+AGG - chr5.1:60343661-60343680 MS.gene78554:CDS 45.0%
TCACCACATCGTAGATGAAG+AGG + chr5.1:60344316-60344335 None:intergenic 45.0%
TCAGATGCAGCAACATGTAG+GGG + chr5.1:60344786-60344805 None:intergenic 45.0%
TTTCAAACTGCAAACGCACG+TGG + chr5.1:60341828-60341847 None:intergenic 45.0%
TTTCTTGCGCGTGTAATGTC+AGG - chr5.1:60343154-60343173 MS.gene78554:intron 45.0%
! CATGACAGCCTTGATAGTCA+AGG - chr5.1:60341705-60341724 MS.gene78554:CDS 45.0%
! CCAAGTCTTATCCCACTAAG+TGG - chr5.1:60345103-60345122 MS.gene78554:intron 45.0%
! CGTGGCCCTTTATTTGTTCA+CGG + chr5.1:60341810-60341829 None:intergenic 45.0%
! TTAGAGAAGGGGCCTCTTTT+AGG - chr5.1:60344643-60344662 MS.gene78554:intron 45.0%
! TTTTATGCGCCCTTGTCCAT+TGG - chr5.1:60342599-60342618 MS.gene78554:intron 45.0%
!! TTCCTTCTCCATTTTTCCCC+TGG - chr5.1:60345329-60345348 MS.gene78554:intron 45.0%
!! TTTTGTCTGTGATGGTGTGC+TGG - chr5.1:60343285-60343304 MS.gene78554:intron 45.0%
!! AATAATAATTATATGATTTA+TGG + chr5.1:60345143-60345162 None:intergenic 5.0%
!! ATAATAATTATATGATTTAT+GGG + chr5.1:60345142-60345161 None:intergenic 5.0%
!! TAAAATAAAAGTTATATATA+TGG + chr5.1:60342914-60342933 None:intergenic 5.0%
ACACGAACAGTATGTGGCTG+AGG + chr5.1:60343772-60343791 None:intergenic 50.0%
ACATCCATGCCGTGTTCAAC+CGG + chr5.1:60343978-60343997 None:intergenic 50.0%
AGATGCAGCAACATGTAGGG+GGG + chr5.1:60344784-60344803 None:intergenic 50.0%
AGCGGTTGCAAGAGGAGATT+CGG - chr5.1:60344695-60344714 MS.gene78554:intron 50.0%
CAGATGCAGCAACATGTAGG+GGG + chr5.1:60344785-60344804 None:intergenic 50.0%
CTAGAGCGCAACAGCTCATT+TGG - chr5.1:60343721-60343740 MS.gene78554:CDS 50.0%
CTCATCCGAGCTTCATCAAG+CGG + chr5.1:60345478-60345497 None:intergenic 50.0%
CTTGATGAAGCTCGGATGAG+TGG - chr5.1:60345478-60345497 MS.gene78554:intron 50.0%
GCCCAATTCACTAGTGTGCT+AGG - chr5.1:60344972-60344991 MS.gene78554:intron 50.0%
GGGAACACTGTGCACTTCTT+TGG + chr5.1:60345711-60345730 None:intergenic 50.0%
TAGCATCTTGCTGCATGCAG+AGG - chr5.1:60344408-60344427 MS.gene78554:intron 50.0%
TCAGGTTACTAGGCTCCATG+AGG - chr5.1:60343204-60343223 MS.gene78554:intron 50.0%
TGCTACTCTCCGGTTGAACA+CGG - chr5.1:60343966-60343985 MS.gene78554:intron 50.0%
TGCTGCATGCAGAGGATATG+AGG - chr5.1:60344416-60344435 MS.gene78554:intron 50.0%
TTATGCTCAGCGGTTGCAAG+AGG - chr5.1:60344687-60344706 MS.gene78554:intron 50.0%
TTTGGATCCCACGGATGGAA+CGG + chr5.1:60345732-60345751 None:intergenic 50.0%
! GTTCTTTTGGATCCCACGGA+TGG + chr5.1:60345737-60345756 None:intergenic 50.0%
!! CAACAAGCATTGGAAGCAGG+TGG + chr5.1:60342012-60342031 None:intergenic 50.0%
AGTGTTCCCGTTCCATCCGT+GGG - chr5.1:60345722-60345741 MS.gene78554:CDS 55.0%
GTGAACTGTGTAGGGTCCTG+CGG - chr5.1:60343794-60343813 MS.gene78554:CDS 55.0%
TTGGATCCCACGGATGGAAC+GGG + chr5.1:60345731-60345750 None:intergenic 55.0%
!! CATAGCTGATGATGGGTCCG+AGG - chr5.1:60343684-60343703 MS.gene78554:CDS 55.0%
CACTGACGCTGCAGTCCTTC+AGG - chr5.1:60341855-60341874 MS.gene78554:intron 60.0%
CAGTGTTCCCGTTCCATCCG+TGG - chr5.1:60345721-60345740 MS.gene78554:CDS 60.0%
CTCTCCGGTTGAACACGGCA+TGG - chr5.1:60343971-60343990 MS.gene78554:intron 60.0%
! AAACAGTAGCGTCGGGCGTC+AGG + chr5.1:60345042-60345061 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 60341676 60345870 60341676 ID=MS.gene78554
chr5.1 mRNA 60341676 60345870 60341676 ID=MS.gene78554.t1;Parent=MS.gene78554
chr5.1 exon 60345643 60345870 60345643 ID=MS.gene78554.t1.exon1;Parent=MS.gene78554.t1
chr5.1 CDS 60345643 60345870 60345643 ID=cds.MS.gene78554.t1;Parent=MS.gene78554.t1
chr5.1 exon 60345198 60345278 60345198 ID=MS.gene78554.t1.exon2;Parent=MS.gene78554.t1
chr5.1 CDS 60345198 60345278 60345198 ID=cds.MS.gene78554.t1;Parent=MS.gene78554.t1
chr5.1 exon 60344240 60344338 60344240 ID=MS.gene78554.t1.exon3;Parent=MS.gene78554.t1
chr5.1 CDS 60344240 60344338 60344240 ID=cds.MS.gene78554.t1;Parent=MS.gene78554.t1
chr5.1 exon 60343652 60343873 60343652 ID=MS.gene78554.t1.exon4;Parent=MS.gene78554.t1
chr5.1 CDS 60343652 60343873 60343652 ID=cds.MS.gene78554.t1;Parent=MS.gene78554.t1
chr5.1 exon 60343286 60343471 60343286 ID=MS.gene78554.t1.exon5;Parent=MS.gene78554.t1
chr5.1 CDS 60343286 60343471 60343286 ID=cds.MS.gene78554.t1;Parent=MS.gene78554.t1
chr5.1 exon 60343060 60343135 60343060 ID=MS.gene78554.t1.exon6;Parent=MS.gene78554.t1
chr5.1 CDS 60343060 60343135 60343060 ID=cds.MS.gene78554.t1;Parent=MS.gene78554.t1
chr5.1 exon 60342678 60342972 60342678 ID=MS.gene78554.t1.exon7;Parent=MS.gene78554.t1
chr5.1 CDS 60342678 60342972 60342678 ID=cds.MS.gene78554.t1;Parent=MS.gene78554.t1
chr5.1 exon 60341966 60342084 60341966 ID=MS.gene78554.t1.exon8;Parent=MS.gene78554.t1
chr5.1 CDS 60341966 60342084 60341966 ID=cds.MS.gene78554.t1;Parent=MS.gene78554.t1
chr5.1 exon 60341676 60341849 60341676 ID=MS.gene78554.t1.exon9;Parent=MS.gene78554.t1
chr5.1 CDS 60341676 60341849 60341676 ID=cds.MS.gene78554.t1;Parent=MS.gene78554.t1
Gene Sequence

>MS.gene78554

ATGGTTCTTGGTGCTTACTTGATCGGTAACATGACAGCCTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAGGATGACAGATCTGATGAAATATATGAATAGAAATAAACTTCATAAGGATATCCGTGAACAAATAAAGGGCCACGTGCGTTTGCAGTTTGAAAGCAGCTACACTGACGCTGCAGTCCTTCAGGATATTCCCATTTCTATTCGATCTAAGGTAATAAGAGAAAGAAGAGGTCCTTTAGCATCATTTATGGTTGTCTATGGAAATCAACATTGTTATTGTTCCTATTTGTTTCACTTTCTACAATAGCTTGCTTTGCCACCTGCTTCCAATGCTTGTTGATATTTGTTCTCAATTTGTTCACTGGAATCGTGTTTTGTTAGCTTTACTTGTAAAATTTCCCTACGTTTCATCTCTATATGTTATATCTGTCAAATTTGTCTTATGTTTCAGAAAATTCATCTTTGTTCTTTGGCGACAAATTTCTGCTGGAGTTTTAGGCCATCTTCTGTTCACATTTTCCATGAAAGCATCTGGTTTGTAGATTATTGTGTAACAGACTAATTAACTTTTGCAGATATTCGAATCATTGTATTCGCCATACATCAAAAACGTTCCTCTTTTTAGTGGATGCTCTTCAGAATTCATCAATCAGATTGTAAGTAATATTTTCCCCATTTCCTGCCATATATCAGTATGAAATGACATTAGTATTATCTATACTTTTGGTGGCTAAAGCTGGAAGCTCTCTTTTGCTTTTTGGACTTGATCTAAAACCTTAAAACTAAGGGGATCAACACTTTCTAACTGGTTTTTCTTTGACATGAAATATTTTGTTATTTAGACTCAAGGAAACAAGTATATTTTATTGACATTGATCTTTTCGTCAATCGGAAATGGCTTTCAACTTTTATGCGCCCTTGTCCATTGGATTTATTGTTTTCTACACAATTGAAATGTTCTACACTAATTTTATCCTTGAAAGAATTCAAGGGTCCGTTTGATTTGCAAAAAGTCAGGGTAATGGTTCAATGTTTGATTTAAATGTTTGTTTGTAGGTCACAACAAATCAAACGATGAGTAACATAACATGACAAAAATCCAAACACTTGTTACTCAACAAACTGTAGGAATAGGTGTATAGGACTGATTATTGTTCAAAGACAAACTACCTAAATAACAGTCTTTACCACTCAGTATATAATTATGCATGTGTGCATCCATATATATAACTTTTATTTTATTTTTTTACATTTTGATTATATAATGTATGTGTGTGTGTGCATACATATGTAATATTTCATATATATGTAGAAACTTTGTATTGATACTGCCACTTTTACTTTCAAGGTTGAACTTTGGATTGATAAAAAAGAACTTGGTAGTATGGGCCTCTTTTCTGCATGCTGAATAAGATTAGTGATACCTTTGTTTAACGAGAGTTTCTAGCTCGTCCGTTATCATTTCTTGCGCGTGTAATGTCAGGTGATAATAATTTATGTTCTTTCATCTTTCAGGTTACTAGGCTCCATGAGGAATTCTTTCTTCCTGGGGAAGTTATAATGCAACAAGGTTACGTTGTAGATCAACTATATTTTGTCTGTGATGGTGTGCTGGTAAGATTTTATATTTCTACAACCACTTCGCTATTTTTCAATTTCTATGTTTTCCCATATTTCAGGTTTCTGATATTAGTCATAGCTTCTGAGTAACTGGAATTAGACCTACTAGTATTCATACCCTTTTATTACCCGATTCATGCCGGATAATGCTGAATTTTCTTTGCAATGTATTACCTTGTAAAAGTGTTTATGAGAATAGCATCTCTGAGATTCTTATGATTGTTCTTCATAATATCTTCCATAGGTCAACAAAGAGGAAACAACTTTAGTATGAATTTTAGAACTACTTCATCGATAGTTTTTTCACAGAAGACGAGTTTCAGTTATGTTTATTGAATGCCCAAAACTGTTTCAATGCAGGAGGAAGTAGGCATAGCTGATGATGGGTCCGAGGAAACTGTTGCACTTCTAGAGCGCAACAGCTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCACATACTGTTCGTGTTTGTGAACTGTGTAGGGTCCTGCGGATTGATAAACAATCCTTTTCAAATATCCTAGATATATACTTTTATGATGGGAAGAAAGTATTAGACAACCTTCTAGAGGTAATCATTATATTTTTTTTGACATCATCTTCCCTTTAATAGAGTATCTACCATGAGTTCAAAATGCATTATGCTACTCTCCGGTTGAACACGGCATGGATGTACTAAGTTACTCATTTTGGTATTATGCAATTTTATTATCTTCTGATCATGAGACACCTAATATCTCATATTTTACAGGGAAAAGAGTCTATTAGAGGTAAGCAATTGGAGTCAGACATCACATTCCATATTGGAAAGCTAGAATCTGATCTTGCTTTGAAGGTCAATAGAACAGCTTTTGATGGCGATATGTATCAGCTAACAAGTTTGATTCGAGCTGGAGCTGATCCCAAAAAGACAGATTATGATGGAAGATCACCTTTGGTAAGGAGCTTGAAACGTATTACTATGATATCATGTTATCAATAAATTCCATCCTCTTCATCTACGATGTGGTGATTAATTGATTATGCCACTAACAAATGCTGTTATAAAATGATTTCCTAATAAGAACCTTTGTTGTTTTTCGTATAGCATCTTGCTGCATGCAGAGGATATGAGGATATCACACTTCTTCTTATTCATGAAGGTGTAGACATCAACGTCAAAGGTAATTGTGTAACCTATATAGATATTCCTCGAGGATCAAACTTAAATTTTAGGTAATGCAAACATCACTGATGTCGTAATTTCACAGATAACTTTGGGAACACACCGCTACTTGAAGCAGTTAAGAATGGACACGATCAGATTGCTTCTTTACTTGTTAGAGAAGGGGCCTCTTTTAGGATAGATGATGGTGGTAGTTTTTTATGCTCAGCGGTTGCAAGAGGAGATTCGGATTATCTTAAAAGGCTTTTATCTTATGGAATGGATGCTAACTTGAAAGATTATGACTATCGAACCCCCCTACATGTTGCTGCATCTGAAGGATTAATCTTCATGGCAAAGTTGTTATTAGAAGCCGGAGCTAGTGTTTTTACCAAAGACAGGTACTGTAATTGATTCTTATTTTACATGTTTAGACTAACATTACTAATGTTTCCAAGAAGGGGAACCTTTTCATACTTGTTTTCAGGTGAAAATTTAAAATTGGCCCAATTCACTAGTGTGCTAGGTTTGTGTGCATGCATGCTCACTTGCGTGTGTCTACAACTATAATCCTGACGCCCGACGCTACTGTTTTCTAGAATTCATGCCTATAAATCTTACGATGACAACAACAACCAAGTCTTATCCCACTAAGTGGAGTTGGCTATATGCCCATAAATCATATAATTATTATTTCAAATCTTGATTTGCTATCATATACTGGACATACAATTCCAAAACAGAACATCAACATGGTATTAAAAGTATTGTGTTGTGAGTTCTTAATTGTGTTTTTATAGACATTACTAGTGCTCCGACCAAGATTGTCCGTTATAGGTGAAATATGAAATGGTTCTCTTTTTCCTTCTCCATTTTTCCCCTGGTTACAAAATACTTGGCTGAACTATATATATAGAATATGCTATAGGTTTAATGTTTCTTTCCTTTTCATTCCAAAACTTATCGTTTTTTTTTTTCATTTCACGCAAAACAGATGGGGAAATACTCCGCTTGATGAAGCTCGGATGAGTGGAAATAAAAATCTGATAAAGCTACTGGAAGATGCAAAATCAGCTCAATTGACAGAATTCCCTTTTCCCCAAGAAATTACAGGTACTGATATGTCGCAAAAGCCTTCTTTTTATCTTTTCATTTTTCTCTACTTTTCTTGAATCTAGATCATATATTGCTGTAAACTCAAATTTAAATCCATCTATCATTTTTTTCAGATAAAGTACATCCAAAGAAGTGCACAGTGTTCCCGTTCCATCCGTGGGATCCAAAAGAACAAAGAAGAAATGGAATAGTATTATGGATTCCACACACCATTCAAGAGCTAATCAAAACAGCAGCAGAACAGATAGGATTTTCCGGTGACTCTTGTATTTTATCAGAAGATGCTG
Protein sequence

>MS.gene78554.t1

MVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNKLHKDIREQIKGHVRLQFESSYTDAAVLQDIPISIRSKIFESLYSPYIKNVPLFSGCSSEFINQIVTRLHEEFFLPGEVIMQQGYVVDQLYFVCDGVLEEVGIADDGSEETVALLERNSSFGEISILCNIPQPHTVRVCELCRVLRIDKQSFSNILDIYFYDGKKVLDNLLEGKESIRGKQLESDITFHIGKLESDLALKVNRTAFDGDMYQLTSLIRAGADPKKTDYDGRSPLHLAACRGYEDITLLLIHEGVDINVKDNFGNTPLLEAVKNGHDQIASLLVREGASFRIDDGGSFLCSAVARGDSDYLKRLLSYGMDANLKDYDYRTPLHVAASEGLIFMAKLLLEAGASVFTKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLTEFPFPQEITDKVHPKKCTVFPFHPWDPKEQRRNGIVLWIPHTIQELIKTAAEQIGFSGDSCILSEDA