AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054214


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054214.t1 MTR_6g045553 98.101 474 9 0 1 474 1 474 0.0 952
MS.gene054214.t1 MTR_5g081960 31.384 513 257 11 16 471 8 482 3.72e-76 247
MS.gene054214.t1 MTR_4g015180 33.063 493 292 10 11 474 3 486 1.20e-74 243
MS.gene054214.t1 MTR_3g070170 30.522 498 275 8 8 471 6 466 8.10e-71 233
MS.gene054214.t1 MTR_3g102020 33.195 482 268 13 8 471 2 447 9.49e-65 216
MS.gene054214.t1 MTR_3g101900 30.672 476 280 11 14 474 7 447 3.01e-64 214
MS.gene054214.t1 MTR_3g102010 31.435 474 282 11 14 474 7 450 7.49e-61 206
MS.gene054214.t1 MTR_4g094842 31.381 478 273 12 13 471 3 444 2.85e-60 204
MS.gene054214.t1 MTR_4g022825 31.126 453 272 12 27 471 16 436 2.10e-59 201
MS.gene054214.t1 MTR_3g101960 30.947 475 277 11 13 470 5 445 2.75e-59 202
MS.gene054214.t1 MTR_3g101970 31.042 480 265 12 13 474 5 436 3.35e-59 201
MS.gene054214.t1 MTR_0190s0020 30.872 447 264 10 34 471 28 438 6.17e-56 192
MS.gene054214.t1 MTR_4g022800 30.407 467 284 12 14 471 4 438 9.39e-55 189
MS.gene054214.t1 MTR_3g101930 28.986 483 280 11 14 471 7 451 1.18e-53 187
MS.gene054214.t1 MTR_8g041770 31.166 446 260 11 35 471 30 437 5.85e-53 184
MS.gene054214.t1 MTR_4g022670 29.915 468 284 15 14 471 4 437 1.59e-51 181
MS.gene054214.t1 MTR_3g088420 30.201 447 269 10 31 471 20 429 6.67e-51 179
MS.gene054214.t1 MTR_4g094835 30.134 448 267 11 35 472 32 443 6.91e-50 176
MS.gene054214.t1 MTR_4g094832 32.804 378 210 10 101 472 88 427 1.04e-49 176
MS.gene054214.t1 MTR_4g022720 29.810 473 272 14 14 471 4 431 2.00e-49 175
MS.gene054214.t1 MTR_3g026310 29.701 468 292 12 14 471 4 444 1.84e-48 172
MS.gene054214.t1 MTR_7g026860 28.875 471 282 12 14 471 4 434 1.48e-47 170
MS.gene054214.t1 MTR_4g094828 30.700 443 261 13 35 462 29 440 9.27e-45 162
MS.gene054214.t1 MTR_4g094838 29.167 456 253 13 34 472 27 429 3.01e-44 161
MS.gene054214.t1 MTR_8g075610 27.660 470 272 21 22 474 2 420 1.25e-39 148
MS.gene054214.t1 MTR_4g022290 28.182 440 263 10 31 456 26 426 3.97e-39 147
MS.gene054214.t1 MTR_4g007540 26.349 482 283 18 14 474 3 433 4.09e-39 147
MS.gene054214.t1 MTR_4g022760 28.426 394 232 10 13 392 3 360 6.07e-37 140
MS.gene054214.t1 MTR_8g079710 29.526 464 265 18 14 456 4 426 2.63e-36 139
MS.gene054214.t1 MTR_4g097090 28.087 413 240 10 66 457 65 441 2.66e-34 134
MS.gene054214.t1 MTR_2g064495 24.684 474 287 16 14 466 3 427 7.31e-33 129
MS.gene054214.t1 MTR_2g105330 24.520 469 294 16 14 466 3 427 1.74e-31 125
MS.gene054214.t1 MTR_3g026950 26.835 436 259 15 14 423 2 403 3.24e-30 122
MS.gene054214.t1 MTR_4g127650 26.859 417 247 12 66 461 66 445 3.65e-29 119
MS.gene054214.t1 MTR_3g102030 27.410 332 174 6 102 428 51 320 5.99e-29 116
MS.gene054214.t1 MTR_8g096530 27.158 475 285 18 12 473 5 431 3.86e-27 113
MS.gene054214.t1 MTR_3g098980 27.311 476 290 17 1 466 1 430 2.13e-26 111
MS.gene054214.t1 MTR_6g016815 25.776 419 226 10 14 428 18 355 6.21e-26 109
MS.gene054214.t1 MTR_3g049150 25.806 434 264 16 51 461 38 436 1.55e-24 106
MS.gene054214.t1 MTR_8g040780 30.317 221 146 5 256 472 13 229 3.55e-24 101
MS.gene054214.t1 MTR_7g014200 26.577 444 268 16 13 426 8 423 5.34e-24 104
MS.gene054214.t1 MTR_6g015815 27.494 451 268 19 35 461 34 449 7.53e-24 104
MS.gene054214.t1 MTR_7g086000 24.532 481 306 17 12 466 2 451 1.49e-21 97.4
MS.gene054214.t1 MTR_7g026850 36.054 147 77 3 48 184 20 159 4.76e-21 90.9
MS.gene054214.t1 MTR_6g015850 26.444 450 271 21 35 461 34 446 2.71e-20 93.6
MS.gene054214.t1 MTR_6g015830 25.727 447 281 16 35 461 34 449 3.76e-20 93.2
MS.gene054214.t1 MTR_6g034495 40.870 115 62 2 77 185 45 159 1.20e-19 86.3
MS.gene054214.t1 MTR_4g094825 37.013 154 85 4 322 474 248 390 3.03e-19 89.7
MS.gene054214.t1 MTR_2g089765 24.638 483 310 16 6 457 8 467 1.16e-18 89.0
MS.gene054214.t1 MTR_7g027175 25.826 484 283 21 10 474 11 437 2.18e-18 87.8
MS.gene054214.t1 MTR_6g015320 25.212 472 293 19 14 461 8 443 5.97e-18 86.7
MS.gene054214.t1 MTR_7g014610 24.544 493 293 19 13 461 7 464 1.92e-17 85.1
MS.gene054214.t1 MTR_8g040760 32.948 173 109 4 34 199 26 198 1.11e-16 79.3
MS.gene054214.t1 MTR_1g053315 24.876 402 237 22 44 423 51 409 5.75e-16 80.5
MS.gene054214.t1 MTR_3g028210 24.582 419 255 17 35 424 31 417 2.92e-15 78.2
MS.gene054214.t1 MTR_7g084940 24.439 446 275 19 12 443 14 411 2.45e-14 75.5
MS.gene054214.t1 MTR_7g084910 25.664 339 212 12 10 341 13 318 4.33e-14 74.3
MS.gene054214.t1 MTR_3g049140 24.880 209 139 4 264 457 26 231 3.10e-12 67.0
MS.gene054214.t1 MTR_4g013050 28.646 192 107 6 292 461 216 399 1.89e-11 66.2
MS.gene054214.t1 MTR_7g014630 25.359 209 120 5 13 199 8 202 3.49e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054214.t1 AT5G23940 62.658 474 139 6 12 472 1 449 0.0 598
MS.gene054214.t1 AT2G39980 31.373 510 265 9 13 474 7 479 1.66e-75 245
MS.gene054214.t1 AT5G01210 32.406 503 264 7 11 474 3 468 4.23e-74 241
MS.gene054214.t1 AT5G42830 33.843 458 260 13 24 471 21 445 1.76e-65 218
MS.gene054214.t1 AT5G07870 30.705 482 290 9 8 471 2 457 8.52e-60 203
MS.gene054214.t1 AT5G07860 30.561 481 268 12 14 471 8 445 8.88e-60 203
MS.gene054214.t1 AT5G67150 31.078 473 282 11 14 474 5 445 2.13e-59 202
MS.gene054214.t1 AT3G50270 29.400 483 278 12 14 474 6 447 1.67e-57 197
MS.gene054214.t1 AT3G50280 30.290 482 268 16 13 471 3 439 2.78e-57 196
MS.gene054214.t1 AT5G07850 30.928 485 283 17 8 474 2 452 1.17e-55 192
MS.gene054214.t1 AT3G50300 28.542 480 289 12 13 474 3 446 1.09e-50 179
MS.gene054214.t1 AT5G67160 29.661 472 264 16 16 470 7 427 2.51e-45 164
MS.gene054214.t1 AT3G50280 31.054 351 186 11 134 471 2 309 8.58e-44 157
MS.gene054214.t1 AT5G38130 27.133 457 281 11 14 456 24 442 6.84e-42 155
MS.gene054214.t1 AT5G48930 25.424 472 304 17 12 474 1 433 1.44e-33 132
MS.gene054214.t1 AT2G19070 27.273 473 274 16 19 461 8 440 6.56e-32 127
MS.gene054214.t1 AT3G50290 27.362 307 173 7 127 421 1 269 7.14e-29 115
MS.gene054214.t1 AT5G41040 26.998 463 279 15 12 461 15 431 5.40e-26 110
MS.gene054214.t1 AT5G41040 26.998 463 279 15 12 461 31 447 6.86e-26 110
MS.gene054214.t1 AT5G63560 27.295 414 238 14 60 461 55 417 6.94e-25 107
MS.gene054214.t1 AT5G57840 25.902 471 272 18 12 454 1 422 9.93e-24 103
MS.gene054214.t1 AT3G48720 26.437 435 253 17 49 466 42 426 9.15e-23 100
MS.gene054214.t1 AT3G29635 27.791 421 254 17 35 434 29 420 4.39e-22 99.0
MS.gene054214.t1 AT1G03940 26.230 488 276 24 15 461 9 453 9.80e-22 98.2
MS.gene054214.t1 AT5G39080 25.376 465 273 16 35 464 28 453 7.36e-19 89.4
MS.gene054214.t1 AT1G03495 28.000 350 188 18 24 343 19 334 1.74e-17 84.0
MS.gene054214.t1 AT5G61160 23.058 399 270 11 38 423 28 402 4.76e-17 84.0
MS.gene054214.t1 AT5G07080 22.727 462 320 11 1 454 1 433 8.35e-16 80.1
MS.gene054214.t1 AT1G03390 25.000 396 240 18 44 423 52 406 3.66e-15 78.2
MS.gene054214.t1 AT5G39090 25.055 451 278 18 35 464 28 439 9.18e-15 76.6
MS.gene054214.t1 AT5G39050 24.926 337 202 9 118 426 109 422 5.33e-14 74.3
MS.gene054214.t1 AT3G47170 24.340 341 210 14 69 392 73 382 1.75e-12 69.7
MS.gene054214.t1 AT1G28680 24.172 302 189 9 140 437 135 400 5.48e-12 68.2
MS.gene054214.t1 AT1G28680 25.108 231 141 6 140 369 135 334 8.83e-12 67.0

Find 136 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGTTCACCTAGGTTTA+AGG 0.194532 6.1:-27204465 MS.gene054214:CDS
CATTCCATCAAATTTGTTAT+TGG 0.197339 6.1:+27204391 None:intergenic
GGCTGATGGTGGCGGGCCTT+TGG 0.215053 6.1:+27205033 None:intergenic
CATCAACTAGCTGGTAAATT+AGG 0.221803 6.1:-27207727 MS.gene054214:CDS
TCACCATTGGCTGATGGTGC+TGG 0.226535 6.1:+27204980 None:intergenic
TTATAGTGGAATCTTGAATT+TGG 0.232801 6.1:-27207563 MS.gene054214:CDS
AGGCTCTCTCCACTCATATT+TGG 0.233495 6.1:-27204793 MS.gene054214:CDS
CATGGCCTTCAATAACCTTT+TGG 0.242465 6.1:+27204579 None:intergenic
GCTGATGGTGGCGGGCCTTT+GGG 0.243992 6.1:+27205034 None:intergenic
GACTGATGGTGGCGGGCCTT+CGG 0.246141 6.1:+27204943 None:intergenic
TAGACCCTTGTTGGCTGTTC+AGG 0.257806 6.1:-27207530 MS.gene054214:intron
CGTCACGGCTGCTGGGCTTT+TGG 0.258163 6.1:-27204636 MS.gene054214:CDS
AAGGTTTATGACATTGATTT+TGG 0.269945 6.1:-27204446 MS.gene054214:CDS
AAAACCATTCTCAACATTTC+AGG 0.271160 6.1:-27204813 MS.gene054214:CDS
GCAAGATAAGGAATTTCTTA+TGG 0.279006 6.1:-27204285 MS.gene054214:CDS
ACTGATGGTGGCGGGCCTTC+GGG 0.283252 6.1:+27204944 None:intergenic
CACACGTGTGTTTCGAGCCT+TGG 0.290687 6.1:+27205081 None:intergenic
CACAACAGCCCAACCATTCT+TGG 0.294816 6.1:-27205110 MS.gene054214:CDS
TGGTGGCGGGCCTTTGGGCT+CGG 0.299287 6.1:+27205039 None:intergenic
AGGAATCAATTCCTTCAAAA+TGG 0.325774 6.1:+27207585 None:intergenic
ATATTCACCGTCACGGCTGC+TGG 0.327578 6.1:-27204644 MS.gene054214:CDS
CGGTGAATATAGCTTGAATT+AGG 0.328962 6.1:+27204657 None:intergenic
TTTAACCATGCTGTCCTTGA+TGG 0.331947 6.1:-27205190 MS.gene054214:CDS
AAATTCAAGATTCCACTATA+AGG 0.356072 6.1:+27207565 None:intergenic
CGTGGCACTTTATGACTTCA+TGG 0.374076 6.1:-27205159 MS.gene054214:CDS
AAGGAATTGATTCCTTATAG+TGG 0.380758 6.1:-27207577 MS.gene054214:CDS
GTGAACACTGTGTAGTCTTC+GGG 0.387913 6.1:+27204740 None:intergenic
AACATTGGAGCCTGAGGCTA+TGG 0.403215 6.1:-27204318 MS.gene054214:CDS
CACCATTGGCTGATGGTGCT+GGG 0.403622 6.1:+27204981 None:intergenic
GGGACCAATAACAAATTTGA+TGG 0.415524 6.1:-27204395 MS.gene054214:CDS
CGGTGCTTCTTTGATCCAAA+AGG 0.416390 6.1:-27204594 MS.gene054214:CDS
GGTGGCGGGCCTTTGGGCTC+GGG 0.421774 6.1:+27205040 None:intergenic
TCACCGTTGGCTGATGGTGG+CGG 0.422423 6.1:+27205025 None:intergenic
GTCCCACTTCTCACAATCTC+TGG 0.424177 6.1:+27204413 None:intergenic
GCGGCCCACCCGCCACAATT+CGG 0.427814 6.1:-27204614 MS.gene054214:CDS
CACCGTTGGCTGATGGTGGC+GGG 0.429449 6.1:+27205026 None:intergenic
CATCAATAGCTTTAGCATCA+TGG 0.431488 6.1:+27204561 None:intergenic
CTCAAAGATGGGCTTGCAAT+GGG 0.433035 6.1:-27205220 MS.gene054214:CDS
CTTTGGGCTCGGGTAGGGAG+AGG 0.433813 6.1:+27205050 None:intergenic
GTGAGGCGAGGCCCATACTT+AGG 0.436505 6.1:-27204916 MS.gene054214:CDS
AGATGGGCTTGCAATGGGCT+TGG 0.436660 6.1:-27205215 MS.gene054214:CDS
CCAAAGTATGCCTCCGGCAT+TGG 0.437756 6.1:+27204683 None:intergenic
CGGGCCTTTGGGCTCGGGTA+GGG 0.441887 6.1:+27205045 None:intergenic
GCCTTGGTTCGTTCCAAGAA+TGG 0.442241 6.1:+27205097 None:intergenic
TTGATCCAAAAGGTTATTGA+AGG 0.442955 6.1:-27204584 MS.gene054214:CDS
TTCAACCTTTGCCTCACCAT+TGG 0.443928 6.1:+27204967 None:intergenic
GGTTCGTTCCAAGAATGGTT+GGG 0.451215 6.1:+27205102 None:intergenic
CCAATGCCGGAGGCATACTT+TGG 0.452064 6.1:-27204683 MS.gene054214:CDS
CACCTTTGACTGATGGTGGC+GGG 0.455285 6.1:+27204936 None:intergenic
AACCGTCTGATGGAAGGGTT+TGG 0.457328 6.1:+27204837 None:intergenic
GCGGGCCTTTGGGCTCGGGT+AGG 0.461338 6.1:+27205044 None:intergenic
GGTGAACACTGTGTAGTCTT+CGG 0.463942 6.1:+27204739 None:intergenic
TGGTTCGTTCCAAGAATGGT+TGG 0.465969 6.1:+27205101 None:intergenic
AATGTTGAGAAACTCAAGAA+TGG 0.466672 6.1:-27207775 MS.gene054214:CDS
TTCATCCTTTACCTCACCGT+TGG 0.466873 6.1:+27205012 None:intergenic
CTCGCCTCACCTTTGACTGA+TGG 0.467374 6.1:+27204929 None:intergenic
AAGGAGTTTCATCAACTAGC+TGG 0.476215 6.1:-27207736 MS.gene054214:CDS
GGAATGATTTATTTGTATCC+TGG 0.476462 6.1:-27204374 MS.gene054214:CDS
GAATGGTTGGGCTGTTGTGA+TGG 0.476607 6.1:+27205114 None:intergenic
CTCCTTCCTCCACTCTTGCC+AGG 0.478842 6.1:+27204356 None:intergenic
CAGCTAACAAAGCTCAAAGA+TGG 0.479174 6.1:-27205232 MS.gene054214:CDS
GAAGCTGTTGCTGATGAGAT+TGG 0.480686 6.1:-27207640 MS.gene054214:CDS
ATCAGCCAACGGTGAGGTAA+AGG 0.492415 6.1:-27205017 MS.gene054214:CDS
GCCTGAGGCTATGGGAAGGT+TGG 0.493581 6.1:-27204309 MS.gene054214:CDS
AGAGCCTGAAATGTTGAGAA+TGG 0.500372 6.1:+27204809 None:intergenic
TGAGGCGAGGCCCATACTTA+GGG 0.501453 6.1:-27204915 MS.gene054214:CDS
GAGGTAAAGGATGAACAAAA+TGG 0.503698 6.1:-27205004 MS.gene054214:CDS
TCACCTTTGACTGATGGTGG+CGG 0.505168 6.1:+27204935 None:intergenic
GCTCAAAGATGGGCTTGCAA+TGG 0.505889 6.1:-27205221 MS.gene054214:CDS
TTTGCCTCACCATTGGCTGA+TGG 0.513475 6.1:+27204974 None:intergenic
TCCAACCTTCCCATAGCCTC+AGG 0.514780 6.1:+27204308 None:intergenic
AAGTATGCCTCCGGCATTGG+TGG 0.514989 6.1:+27204686 None:intergenic
AGTGGAATCTTGAATTTGGA+AGG 0.516771 6.1:-27207559 MS.gene054214:CDS
CATTGATGTTGAATTAACAT+TGG 0.517058 6.1:-27204333 MS.gene054214:CDS
TATTCACCGTCACGGCTGCT+GGG 0.518357 6.1:-27204643 MS.gene054214:CDS
AGGTTTCCAAAGTATGCCTC+CGG 0.518580 6.1:+27204677 None:intergenic
GTGGCACTTTATGACTTCAT+GGG 0.519987 6.1:-27205158 MS.gene054214:CDS
TTTACCTCACCGTTGGCTGA+TGG 0.523325 6.1:+27205019 None:intergenic
ATGTCATAAACCTTAAACCT+AGG 0.527449 6.1:+27204455 None:intergenic
ACGAGTGAACCCACCAATGC+CGG 0.528510 6.1:-27204696 MS.gene054214:CDS
ATGTTGAGAAACTCAAGAAT+GGG 0.530484 6.1:-27207774 MS.gene054214:CDS
GGGTCCACCACTGCATATCT+CGG 0.531397 6.1:+27205135 None:intergenic
GGGAAGGTTGGAGCAAGATA+AGG 0.542296 6.1:-27204297 MS.gene054214:CDS
GGTGTGAATTGTGTTGCAGT+TGG 0.547554 6.1:-27204485 MS.gene054214:CDS
ACCTCACCGTTGGCTGATGG+TGG 0.550202 6.1:+27205022 None:intergenic
GCCTCACCTTTGACTGATGG+TGG 0.552672 6.1:+27204932 None:intergenic
AAGAAGCACCGAATTGTGGC+GGG 0.555266 6.1:+27204606 None:intergenic
AATGGTTGGGCTGTTGTGAT+GGG 0.555391 6.1:+27205115 None:intergenic
AGCCAGAGATTGTGAGAAGT+GGG 0.558602 6.1:-27204415 MS.gene054214:CDS
GAATATGATGATGACTTGGT+TGG 0.560722 6.1:-27207676 MS.gene054214:CDS
AAGCCAGAGATTGTGAGAAG+TGG 0.561140 6.1:-27204416 MS.gene054214:CDS
CAAAAGCCCAGCAGCCGTGA+CGG 0.561878 6.1:+27204637 None:intergenic
AGCTAACAAAGCTCAAAGAT+GGG 0.564355 6.1:-27205231 MS.gene054214:CDS
TGTTGAATATGATGATGACT+TGG 0.566299 6.1:-27207680 MS.gene054214:CDS
AAGCACCGAATTGTGGCGGG+TGG 0.568822 6.1:+27204609 None:intergenic
TTGATGAACGTAACAAAGAG+TGG 0.570116 6.1:-27204544 MS.gene054214:CDS
ATCAAAGAAGCACCGAATTG+TGG 0.570969 6.1:+27204602 None:intergenic
ATCAGCCAATGGTGAGGCAA+AGG 0.577906 6.1:-27204972 MS.gene054214:CDS
AGTATGCCTCCGGCATTGGT+GGG 0.580863 6.1:+27204687 None:intergenic
AGGCATGCATAGACCCTTGT+TGG 0.581452 6.1:-27207539 MS.gene054214:CDS
GGCCCGCCACCATCAGTCAA+AGG 0.583316 6.1:-27204938 MS.gene054214:CDS
TTGTATCCTGGCAAGAGTGG+AGG 0.586098 6.1:-27204362 MS.gene054214:CDS
ACCATTCTTGGAACGAACCA+AGG 0.594369 6.1:-27205098 MS.gene054214:CDS
AATTACCTGAACAGCCAACA+AGG 0.594893 6.1:+27207525 None:intergenic
GGTCACGTGCAAGGCTCACG+TGG 0.595366 6.1:+27204768 None:intergenic
TTGCAGTTGGAAGTTCACCT+AGG 0.596541 6.1:-27204472 MS.gene054214:CDS
CTCTCCCTACCCGAGCCCAA+AGG 0.598539 6.1:-27205049 MS.gene054214:CDS
ACATTGGAGCCTGAGGCTAT+GGG 0.602218 6.1:-27204317 MS.gene054214:CDS
TAAATTAGGAAAAGATGAAG+AGG 0.606100 6.1:-27207713 MS.gene054214:CDS
TGATGAACGTAACAAAGAGT+GGG 0.610084 6.1:-27204543 MS.gene054214:CDS
AACCAAACCCTTCCATCAGA+CGG 0.617474 6.1:-27204839 MS.gene054214:CDS
AGCACCATCAGCCAATGGTG+AGG 0.618064 6.1:-27204978 MS.gene054214:CDS
GCCACGTGGATGTTCCATCA+AGG 0.620237 6.1:+27205176 None:intergenic
AAAGAAGCACCGAATTGTGG+CGG 0.621574 6.1:+27204605 None:intergenic
GGCCCGCCACCATCAGCCAA+CGG 0.622001 6.1:-27205028 MS.gene054214:CDS
TGAATTAACATTGGAGCCTG+AGG 0.623430 6.1:-27204324 MS.gene054214:CDS
TATTTGTATCCTGGCAAGAG+TGG 0.624675 6.1:-27204365 MS.gene054214:CDS
GAGGCAAAGGTTGAACCCGA+AGG 0.625057 6.1:-27204959 MS.gene054214:CDS
AGCACCGAATTGTGGCGGGT+GGG 0.630063 6.1:+27204610 None:intergenic
GGCCCAGCACCATCAGCCAA+TGG 0.630831 6.1:-27204983 MS.gene054214:CDS
AAATTAGGAAAAGATGAAGA+GGG 0.635748 6.1:-27207712 MS.gene054214:CDS
CACGTGGCGCCAAATATGAG+TGG 0.636105 6.1:+27204784 None:intergenic
CATCAGTCAAAGGTGAGGCG+AGG 0.638645 6.1:-27204928 MS.gene054214:CDS
GCCACCATCAGTCAAAGGTG+AGG 0.647740 6.1:-27204933 MS.gene054214:CDS
TCAAGCTATATTCACCGTCA+CGG 0.648331 6.1:-27204651 MS.gene054214:CDS
ATGTTCCATCAAGGACAGCA+TGG 0.653199 6.1:+27205185 None:intergenic
CAAAAGCTATGTGAAACCTG+AGG 0.658022 6.1:-27207905 MS.gene054214:CDS
AGTGAACCCACCAATGCCGG+AGG 0.665412 6.1:-27204693 MS.gene054214:CDS
TGGGCCGAGATATGCAGTGG+TGG 0.665900 6.1:-27205139 MS.gene054214:CDS
TCATGGGCCGAGATATGCAG+TGG 0.679492 6.1:-27205142 MS.gene054214:CDS
TGGAGCCTGAGGCTATGGGA+AGG 0.683457 6.1:-27204313 MS.gene054214:CDS
ATCCTGGCAAGAGTGGAGGA+AGG 0.685214 6.1:-27204358 MS.gene054214:CDS
GCCACCATCAGCCAACGGTG+AGG 0.688155 6.1:-27205023 MS.gene054214:CDS
ATTACCTGAACAGCCAACAA+GGG 0.693693 6.1:+27207526 None:intergenic
TGAAGTCATAAAGTGCCACG+TGG 0.750172 6.1:+27205162 None:intergenic
TCCTTGATGGAACATCCACG+TGG 0.766828 6.1:-27205177 MS.gene054214:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGTTATAATTTATAAG+AGG - chr6.1:27206590-27206609 MS.gene054214:intron 10.0%
!! AAATTTAATCAATTTAGAAA+TGG + chr6.1:27204793-27204812 None:intergenic 10.0%
!! ATAATAGAATATCATTAAAT+AGG - chr6.1:27205357-27205376 MS.gene054214:intron 10.0%
!! ATTTAATGATATTCTATTAT+TGG + chr6.1:27205357-27205376 None:intergenic 10.0%
!! TTAAATTAAAATATACTACT+AGG - chr6.1:27204857-27204876 MS.gene054214:CDS 10.0%
!!! CAAAAATTAATTTTTTACAA+AGG - chr6.1:27204421-27204440 MS.gene054214:CDS 10.0%
!!! CTTTGTAAAAAATTAATTTT+TGG + chr6.1:27204423-27204442 None:intergenic 10.0%
!!! CTTTTGTTTATATTTTATTT+TGG - chr6.1:27205722-27205741 MS.gene054214:intron 10.0%
!!! GGAATTTAAAATTTATTTTT+TGG + chr6.1:27206090-27206109 None:intergenic 10.0%
!! AATGTAAAAAAAGAGTAATT+TGG + chr6.1:27205509-27205528 None:intergenic 15.0%
!! ATATTCTATTATTGGAAAAT+AGG + chr6.1:27205349-27205368 None:intergenic 15.0%
!! TTTACATTATATTTACCTTA+AGG - chr6.1:27205521-27205540 MS.gene054214:intron 15.0%
!!! AAATTAATTTTTTACAAAGG+AGG - chr6.1:27204424-27204443 MS.gene054214:CDS 15.0%
!!! AATTATTTTAACCATTTCTT+AGG + chr6.1:27206449-27206468 None:intergenic 15.0%
!!! ATTAGTTTAATCATAATCAA+CGG + chr6.1:27206421-27206440 None:intergenic 15.0%
!!! TATAATTTATAAGAGGATTT+TGG - chr6.1:27206597-27206616 MS.gene054214:intron 15.0%
!!! TATTTTTGGAAGTTATATAT+GGG + chr6.1:27206647-27206666 None:intergenic 15.0%
!!! TTATTTTTGGAAGTTATATA+TGG + chr6.1:27206648-27206667 None:intergenic 15.0%
!!! TTGTTTATATTTTATTTTGG+AGG - chr6.1:27205725-27205744 MS.gene054214:intron 15.0%
!!! TTTATCTTATCCTTTTTTAT+TGG + chr6.1:27206157-27206176 None:intergenic 15.0%
!! AGGTATTATTTAAACTCAAA+TGG - chr6.1:27205748-27205767 MS.gene054214:intron 20.0%
!! ATATAAACAAAAGTGATAGT+TGG + chr6.1:27205715-27205734 None:intergenic 20.0%
!! ATATTTGTGGAAGTTATATA+TGG + chr6.1:27205280-27205299 None:intergenic 20.0%
!! ATCTTTGAATTGAAAAATCT+TGG + chr6.1:27207727-27207746 None:intergenic 20.0%
!! ATTAAACAACCATTACTATA+AGG + chr6.1:27206049-27206068 None:intergenic 20.0%
!! ATTCACTCTTAATAAACAAA+TGG + chr6.1:27206290-27206309 None:intergenic 20.0%
!! CATTAAATACCTTATAGTAA+TGG - chr6.1:27206037-27206056 MS.gene054214:intron 20.0%
!! TAAATCTCAACCAATAAAAA+AGG - chr6.1:27206144-27206163 MS.gene054214:intron 20.0%
!! TATTTGTGGAAGTTATATAT+GGG + chr6.1:27205279-27205298 None:intergenic 20.0%
!! TCTTTGAATTGAAAAATCTT+GGG + chr6.1:27207726-27207745 None:intergenic 20.0%
!! TGAAGAAAATTAAATTCACT+AGG + chr6.1:27206246-27206265 None:intergenic 20.0%
!! TTAAATCAAAACCTAAATGT+AGG + chr6.1:27204888-27204907 None:intergenic 20.0%
!!! AAAGTGAATCTCTTTATTTT+TGG + chr6.1:27206661-27206680 None:intergenic 20.0%
!!! ATTTAAAATCATAGCCTAAA+GGG - chr6.1:27205004-27205023 MS.gene054214:CDS 20.0%
!!! GTCTTATTTCATGATATTAT+TGG + chr6.1:27206717-27206736 None:intergenic 20.0%
!!! TAATTGTGTTGTTTTGTTTT+CGG - chr6.1:27206464-27206483 MS.gene054214:intron 20.0%
!!! TATTTAAAATCATAGCCTAA+AGG - chr6.1:27205003-27205022 MS.gene054214:CDS 20.0%
!!! TTTATATTTTATTTTGGAGG+AGG - chr6.1:27205728-27205747 MS.gene054214:intron 20.0%
! AAATAACAAAAAGAGGACAT+AGG + chr6.1:27206689-27206708 None:intergenic 25.0%
! AAATTAGGAAAAGATGAAGA+GGG - chr6.1:27204523-27204542 MS.gene054214:CDS 25.0%
! AAATTCAAGATTCCACTATA+AGG + chr6.1:27204673-27204692 None:intergenic 25.0%
! AACCACATTTAGATAGTATT+TGG + chr6.1:27205182-27205201 None:intergenic 25.0%
! AGTTGGAAAATCAATGTATA+TGG + chr6.1:27205698-27205717 None:intergenic 25.0%
! ATAGCAAATCTCTATATTTG+TGG + chr6.1:27205293-27205312 None:intergenic 25.0%
! ATTAAATTCACTAGGTAGAT+TGG + chr6.1:27206238-27206257 None:intergenic 25.0%
! CATTGATGTTGAATTAACAT+TGG - chr6.1:27207902-27207921 MS.gene054214:CDS 25.0%
! CCATTTATTAAATACACCAA+AGG + chr6.1:27206826-27206845 None:intergenic 25.0%
! GGTCAAAAAATAACAAAAAG+AGG + chr6.1:27206696-27206715 None:intergenic 25.0%
! TAAAAATCAAAACAAGACAC+AGG + chr6.1:27205321-27205340 None:intergenic 25.0%
! TAAATTAGGAAAAGATGAAG+AGG - chr6.1:27204522-27204541 MS.gene054214:CDS 25.0%
! TACAAAAACTAGATACCTTA+AGG + chr6.1:27205539-27205558 None:intergenic 25.0%
! TTGTAGTAAAAAGCTAAGTA+AGG + chr6.1:27204400-27204419 None:intergenic 25.0%
! TTTAGATAGTATTTGGCATT+TGG + chr6.1:27205175-27205194 None:intergenic 25.0%
!! ACTATAAGGTATTTAATGTG+TGG + chr6.1:27206035-27206054 None:intergenic 25.0%
!! CCTTTGGTGTATTTAATAAA+TGG - chr6.1:27206823-27206842 MS.gene054214:intron 25.0%
!! TTATAGTGGAATCTTGAATT+TGG - chr6.1:27204672-27204691 MS.gene054214:CDS 25.0%
!! TTCTACTCTAATTGTTACTT+GGG + chr6.1:27205461-27205480 None:intergenic 25.0%
!!! AAGGTTTATGACATTGATTT+TGG - chr6.1:27207789-27207808 MS.gene054214:CDS 25.0%
!!! ACCAAAGGTAATTTTTCAAA+CGG + chr6.1:27206811-27206830 None:intergenic 25.0%
!!! ATGACATTGATTTTGGATTT+GGG - chr6.1:27207796-27207815 MS.gene054214:CDS 25.0%
!!! ATTTTTCAATTCAAAGATGC+TGG - chr6.1:27207729-27207748 MS.gene054214:CDS 25.0%
!!! CATTCCATCAAATTTGTTAT+TGG + chr6.1:27207847-27207866 None:intergenic 25.0%
!!! TATGACATTGATTTTGGATT+TGG - chr6.1:27207795-27207814 MS.gene054214:CDS 25.0%
AAAACCATTCTCAACATTTC+AGG - chr6.1:27207422-27207441 MS.gene054214:intron 30.0%
AATAAGCCAATCAATGTTGT+TGG - chr6.1:27206856-27206875 MS.gene054214:intron 30.0%
AATGTTGAGAAACTCAAGAA+TGG - chr6.1:27204460-27204479 MS.gene054214:CDS 30.0%
ACCGTTTGAAAAATTACCTT+TGG - chr6.1:27206807-27206826 MS.gene054214:intron 30.0%
ACTAATTGTAGCCTAAGAAA+TGG - chr6.1:27206435-27206454 MS.gene054214:intron 30.0%
AGATTGAAAACCACAAAACA+AGG - chr6.1:27205221-27205240 MS.gene054214:CDS 30.0%
AGGAATCAATTCCTTCAAAA+TGG + chr6.1:27204653-27204672 None:intergenic 30.0%
AGTAAAAAGCTAAGTAAGGT+AGG + chr6.1:27204396-27204415 None:intergenic 30.0%
AGTTGAAAAGTTTGTGTATG+TGG - chr6.1:27205659-27205678 MS.gene054214:intron 30.0%
ATAAGCCAATCAATGTTGTT+GGG - chr6.1:27206857-27206876 MS.gene054214:intron 30.0%
ATGTCATAAACCTTAAACCT+AGG + chr6.1:27207783-27207802 None:intergenic 30.0%
ATGTTGAGAAACTCAAGAAT+GGG - chr6.1:27204461-27204480 MS.gene054214:CDS 30.0%
CTTCTACTCTAATTGTTACT+TGG + chr6.1:27205462-27205481 None:intergenic 30.0%
GAATATGACATGTGAAAGTT+GGG + chr6.1:27206907-27206926 None:intergenic 30.0%
GATTGAAAACCACAAAACAA+GGG - chr6.1:27205222-27205241 MS.gene054214:CDS 30.0%
GCAAGATAAGGAATTTCTTA+TGG - chr6.1:27207950-27207969 MS.gene054214:CDS 30.0%
GGAATGATTTATTTGTATCC+TGG - chr6.1:27207861-27207880 MS.gene054214:CDS 30.0%
TGAAACCTGAGGAAAAAATT+GGG - chr6.1:27204341-27204360 MS.gene054214:CDS 30.0%
TGAATATGACATGTGAAAGT+TGG + chr6.1:27206908-27206927 None:intergenic 30.0%
TGAGGAAAAAATTGGGAAAA+AGG - chr6.1:27204348-27204367 MS.gene054214:CDS 30.0%
TGCCAAATACTATCTAAATG+TGG - chr6.1:27205177-27205196 MS.gene054214:CDS 30.0%
TTGATCCAAAAGGTTATTGA+AGG - chr6.1:27207651-27207670 MS.gene054214:CDS 30.0%
! AACTGCAACTAATTTTTCTG+CGG + chr6.1:27206111-27206130 None:intergenic 30.0%
! AAGATCTTTTCCCTAAGTAT+GGG + chr6.1:27207333-27207352 None:intergenic 30.0%
! AAGGAATTGATTCCTTATAG+TGG - chr6.1:27204658-27204677 MS.gene054214:CDS 30.0%
! ATTAGTTTCACGTTTATGCA+TGG - chr6.1:27205902-27205921 MS.gene054214:intron 30.0%
! ATTTTAGATCAATCCACACA+AGG - chr6.1:27205969-27205988 MS.gene054214:intron 30.0%
! TGTTGAATATGATGATGACT+TGG - chr6.1:27204555-27204574 MS.gene054214:CDS 30.0%
!! TTTTTCCCAATTTTTTCCTC+AGG + chr6.1:27204349-27204368 None:intergenic 30.0%
!!! AGATCTTGTTTTATGCAAAC+CGG + chr6.1:27205935-27205954 None:intergenic 30.0%
!!! ATCTTTTTTGACTCAATGTG+TGG + chr6.1:27206009-27206028 None:intergenic 30.0%
!!! TAAATGTATCCCTTGTTTTG+TGG + chr6.1:27205234-27205253 None:intergenic 30.0%
AAGTTGAATGTTGACCCTTT+AGG + chr6.1:27205021-27205040 None:intergenic 35.0%
ACTAGGTGATTCCTACATTT+AGG - chr6.1:27204874-27204893 MS.gene054214:CDS 35.0%
AGCTAACAAAGCTCAAAGAT+GGG - chr6.1:27207004-27207023 MS.gene054214:intron 35.0%
AGTGGAATCTTGAATTTGGA+AGG - chr6.1:27204676-27204695 MS.gene054214:CDS 35.0%
ATTGTATTCATATCCGACAC+CGG - chr6.1:27206525-27206544 MS.gene054214:intron 35.0%
CACACATAGAACTTGATCTA+AGG - chr6.1:27205575-27205594 MS.gene054214:intron 35.0%
CATCAACTAGCTGGTAAATT+AGG - chr6.1:27204508-27204527 MS.gene054214:CDS 35.0%
CGGTGAATATAGCTTGAATT+AGG + chr6.1:27207581-27207600 None:intergenic 35.0%
GAGGTAAAGGATGAACAAAA+TGG - chr6.1:27207231-27207250 MS.gene054214:intron 35.0%
GCAAATGTAACAAGGATTTC+CGG + chr6.1:27206547-27206566 None:intergenic 35.0%
GGGACCAATAACAAATTTGA+TGG - chr6.1:27207840-27207859 MS.gene054214:CDS 35.0%
GTGAAACCTGAGGAAAAAAT+TGG - chr6.1:27204340-27204359 MS.gene054214:CDS 35.0%
TGACTTGAGAGATCATAGTT+TGG - chr6.1:27205112-27205131 MS.gene054214:CDS 35.0%
TGATGAACGTAACAAAGAGT+GGG - chr6.1:27207692-27207711 MS.gene054214:CDS 35.0%
TGGAAGTTATATATGGGAAG+AGG + chr6.1:27206641-27206660 None:intergenic 35.0%
TTGATGAACGTAACAAAGAG+TGG - chr6.1:27207691-27207710 MS.gene054214:CDS 35.0%
! GAAGATCTTTTCCCTAAGTA+TGG + chr6.1:27207334-27207353 None:intergenic 35.0%
!! CATCAATAGCTTTAGCATCA+TGG + chr6.1:27207677-27207696 None:intergenic 35.0%
!! GAATATGATGATGACTTGGT+TGG - chr6.1:27204559-27204578 MS.gene054214:CDS 35.0%
!! TGGGAAAAAGGAGTATCAAT+TGG - chr6.1:27204360-27204379 MS.gene054214:CDS 35.0%
!! TTTTTGACTCAATGTGTGGT+TGG + chr6.1:27206005-27206024 None:intergenic 35.0%
!!! GATCTTGTTTTATGCAAACC+GGG + chr6.1:27205934-27205953 None:intergenic 35.0%
!!! TGAAAGTAGTGCCATTTTGA+AGG - chr6.1:27204639-27204658 MS.gene054214:CDS 35.0%
!!! TGTTGACTTGATTTTGTCGA+TGG + chr6.1:27207373-27207392 None:intergenic 35.0%
!!! TTGTGTTGTTTTGTTTTCGG+TGG - chr6.1:27206467-27206486 MS.gene054214:intron 35.0%
AAAGTTGAGCAATGCACACT+TGG + chr6.1:27206198-27206217 None:intergenic 40.0%
AAGGAGTTTCATCAACTAGC+TGG - chr6.1:27204499-27204518 MS.gene054214:CDS 40.0%
AATTACCTGAACAGCCAACA+AGG + chr6.1:27204713-27204732 None:intergenic 40.0%
ACTCTCCCAACAACATTGAT+TGG + chr6.1:27206865-27206884 None:intergenic 40.0%
AGAGCCTGAAATGTTGAGAA+TGG + chr6.1:27207429-27207448 None:intergenic 40.0%
ATTACCTGAACAGCCAACAA+GGG + chr6.1:27204712-27204731 None:intergenic 40.0%
CAAAAGCTATGTGAAACCTG+AGG - chr6.1:27204330-27204349 MS.gene054214:CDS 40.0%
CAGCTAACAAAGCTCAAAGA+TGG - chr6.1:27207003-27207022 MS.gene054214:intron 40.0%
GTGGCACTTTATGACTTCAT+GGG - chr6.1:27207077-27207096 MS.gene054214:intron 40.0%
GTTTATGCATGGAGAATACC+CGG - chr6.1:27205913-27205932 MS.gene054214:intron 40.0%
TATTTGTATCCTGGCAAGAG+TGG - chr6.1:27207870-27207889 MS.gene054214:CDS 40.0%
TCAAGCTATATTCACCGTCA+CGG - chr6.1:27207584-27207603 MS.gene054214:CDS 40.0%
TGAATTAACATTGGAGCCTG+AGG - chr6.1:27207911-27207930 MS.gene054214:CDS 40.0%
TGGAAGTTCACCTAGGTTTA+AGG - chr6.1:27207770-27207789 MS.gene054214:CDS 40.0%
TTTAACCATGCTGTCCTTGA+TGG - chr6.1:27207045-27207064 MS.gene054214:intron 40.0%
! CATGGCCTTCAATAACCTTT+TGG + chr6.1:27207659-27207678 None:intergenic 40.0%
! TTTTGAACCGTCTGATGGAA+GGG + chr6.1:27207406-27207425 None:intergenic 40.0%
!! ATCAAAGAAGCACCGAATTG+TGG + chr6.1:27207636-27207655 None:intergenic 40.0%
!! CATCTTTGAGCTTTGTTAGC+TGG + chr6.1:27207005-27207024 None:intergenic 40.0%
!!! AATGGTTTTGAACCGTCTGA+TGG + chr6.1:27207411-27207430 None:intergenic 40.0%
!!! TGGGCTTAGTGTAGTTTTGA+AGG - chr6.1:27204480-27204499 MS.gene054214:CDS 40.0%
AACCAAACCCTTCCATCAGA+CGG - chr6.1:27207396-27207415 MS.gene054214:intron 45.0%
AAGCCAGAGATTGTGAGAAG+TGG - chr6.1:27207819-27207838 MS.gene054214:CDS 45.0%
AATGGTTGGGCTGTTGTGAT+GGG + chr6.1:27207123-27207142 None:intergenic 45.0%
ACCATTCTTGGAACGAACCA+AGG - chr6.1:27207137-27207156 MS.gene054214:intron 45.0%
AGCCAGAGATTGTGAGAAGT+GGG - chr6.1:27207820-27207839 MS.gene054214:CDS 45.0%
AGGCTCTCTCCACTCATATT+TGG - chr6.1:27207442-27207461 MS.gene054214:intron 45.0%
AGGTTTCCAAAGTATGCCTC+CGG + chr6.1:27207561-27207580 None:intergenic 45.0%
ATGTTCCATCAAGGACAGCA+TGG + chr6.1:27207053-27207072 None:intergenic 45.0%
CATCACGCGCAAATGTAACA+AGG + chr6.1:27206555-27206574 None:intergenic 45.0%
CGGTGCTTCTTTGATCCAAA+AGG - chr6.1:27207641-27207660 MS.gene054214:CDS 45.0%
CGTGGCACTTTATGACTTCA+TGG - chr6.1:27207076-27207095 MS.gene054214:intron 45.0%
CTTAGTGCTAGAGCAATGCA+TGG - chr6.1:27206383-27206402 MS.gene054214:intron 45.0%
GAAGCTGTTGCTGATGAGAT+TGG - chr6.1:27204595-27204614 MS.gene054214:CDS 45.0%
GGTGAACACTGTGTAGTCTT+CGG + chr6.1:27207499-27207518 None:intergenic 45.0%
GGTGTGAATTGTGTTGCAGT+TGG - chr6.1:27207750-27207769 MS.gene054214:CDS 45.0%
GGTTCGTTCCAAGAATGGTT+GGG + chr6.1:27207136-27207155 None:intergenic 45.0%
GTAACAAGGATTTCCGGTGT+CGG + chr6.1:27206541-27206560 None:intergenic 45.0%
GTGAACACTGTGTAGTCTTC+GGG + chr6.1:27207498-27207517 None:intergenic 45.0%
TGGCATTTGGAGAGAACTCT+AGG + chr6.1:27205162-27205181 None:intergenic 45.0%
TGGTTCGTTCCAAGAATGGT+TGG + chr6.1:27207137-27207156 None:intergenic 45.0%
TTCAACCTTTGCCTCACCAT+TGG + chr6.1:27207271-27207290 None:intergenic 45.0%
TTCATCCTTTACCTCACCGT+TGG + chr6.1:27207226-27207245 None:intergenic 45.0%
TTGCAGTTGGAAGTTCACCT+AGG - chr6.1:27207763-27207782 MS.gene054214:CDS 45.0%
! CTCAAAGATGGGCTTGCAAT+GGG - chr6.1:27207015-27207034 MS.gene054214:intron 45.0%
! GATTTTGTCGATGGCTGACT+CGG + chr6.1:27207364-27207383 None:intergenic 45.0%
! TGAAGTCATAAAGTGCCACG+TGG + chr6.1:27207076-27207095 None:intergenic 45.0%
! TGGCTGATCTTTTCCTTGTG+TGG + chr6.1:27205985-27206004 None:intergenic 45.0%
! TTTTCTGCAGTCTGCGAAGA+CGG + chr6.1:27207520-27207539 None:intergenic 45.0%
!! AAAGAAGCACCGAATTGTGG+CGG + chr6.1:27207633-27207652 None:intergenic 45.0%
!! CTGTGTAGTCTTCGGGTTTT+AGG + chr6.1:27207491-27207510 None:intergenic 45.0%
!! GTTTTGAACCGTCTGATGGA+AGG + chr6.1:27207407-27207426 None:intergenic 45.0%
!! TTTAGATTTAAAAAAATTTA+AGG - chr6.1:27205879-27205898 MS.gene054214:intron 5.0%
!!! AAATTTTTTTAAATCTAAAT+TGG + chr6.1:27205878-27205897 None:intergenic 5.0%
!!! AGTATATTTTAATTTAAAAA+TGG + chr6.1:27204854-27204873 None:intergenic 5.0%
!!! GAATTTAAAATTTATTTTTT+GGG + chr6.1:27206089-27206108 None:intergenic 5.0%
AACATTGGAGCCTGAGGCTA+TGG - chr6.1:27207917-27207936 MS.gene054214:CDS 50.0%
AACCGTCTGATGGAAGGGTT+TGG + chr6.1:27207401-27207420 None:intergenic 50.0%
ACATTGGAGCCTGAGGCTAT+GGG - chr6.1:27207918-27207937 MS.gene054214:CDS 50.0%
AGGCATGCATAGACCCTTGT+TGG - chr6.1:27204696-27204715 MS.gene054214:CDS 50.0%
ATCAGCCAACGGTGAGGTAA+AGG - chr6.1:27207218-27207237 MS.gene054214:intron 50.0%
ATCAGCCAATGGTGAGGCAA+AGG - chr6.1:27207263-27207282 MS.gene054214:intron 50.0%
CACAACAGCCCAACCATTCT+TGG - chr6.1:27207125-27207144 MS.gene054214:intron 50.0%
GAATGGTTGGGCTGTTGTGA+TGG + chr6.1:27207124-27207143 None:intergenic 50.0%
GCTAGAGCAATGCATGGCTT+TGG - chr6.1:27206389-27206408 MS.gene054214:intron 50.0%
GGGAAGGTTGGAGCAAGATA+AGG - chr6.1:27207938-27207957 MS.gene054214:CDS 50.0%
GTCCCACTTCTCACAATCTC+TGG + chr6.1:27207825-27207844 None:intergenic 50.0%
TCCTTGATGGAACATCCACG+TGG - chr6.1:27207058-27207077 MS.gene054214:intron 50.0%
TTGTATCCTGGCAAGAGTGG+AGG - chr6.1:27207873-27207892 MS.gene054214:CDS 50.0%
! GCCTTGGTTCGTTCCAAGAA+TGG + chr6.1:27207141-27207160 None:intergenic 50.0%
! GCTCAAAGATGGGCTTGCAA+TGG - chr6.1:27207014-27207033 MS.gene054214:intron 50.0%
! TAGACCCTTGTTGGCTGTTC+AGG - chr6.1:27204705-27204724 MS.gene054214:CDS 50.0%
! TTTACCTCACCGTTGGCTGA+TGG + chr6.1:27207219-27207238 None:intergenic 50.0%
! TTTGCCTCACCATTGGCTGA+TGG + chr6.1:27207264-27207283 None:intergenic 50.0%
!! AAGAAGCACCGAATTGTGGC+GGG + chr6.1:27207632-27207651 None:intergenic 50.0%
!! TCACCTTTGACTGATGGTGG+CGG + chr6.1:27207303-27207322 None:intergenic 50.0%
ACGAGTGAACCCACCAATGC+CGG - chr6.1:27207539-27207558 MS.gene054214:CDS 55.0%
AGCACCATCAGCCAATGGTG+AGG - chr6.1:27207257-27207276 MS.gene054214:intron 55.0%
ATATTCACCGTCACGGCTGC+TGG - chr6.1:27207591-27207610 MS.gene054214:CDS 55.0%
ATCCTGGCAAGAGTGGAGGA+AGG - chr6.1:27207877-27207896 MS.gene054214:CDS 55.0%
CACACGTGTGTTTCGAGCCT+TGG + chr6.1:27207157-27207176 None:intergenic 55.0%
CACGTGGCGCCAAATATGAG+TGG + chr6.1:27207454-27207473 None:intergenic 55.0%
CATCAGTCAAAGGTGAGGCG+AGG - chr6.1:27207307-27207326 MS.gene054214:intron 55.0%
CCAAAGTATGCCTCCGGCAT+TGG + chr6.1:27207555-27207574 None:intergenic 55.0%
CTCGCCTCACCTTTGACTGA+TGG + chr6.1:27207309-27207328 None:intergenic 55.0%
GAGGCAAAGGTTGAACCCGA+AGG - chr6.1:27207276-27207295 MS.gene054214:intron 55.0%
GCCACCATCAGTCAAAGGTG+AGG - chr6.1:27207302-27207321 MS.gene054214:intron 55.0%
GCCACGTGGATGTTCCATCA+AGG + chr6.1:27207062-27207081 None:intergenic 55.0%
GCCTCACCTTTGACTGATGG+TGG + chr6.1:27207306-27207325 None:intergenic 55.0%
GGGTCCACCACTGCATATCT+CGG + chr6.1:27207103-27207122 None:intergenic 55.0%
TATTCACCGTCACGGCTGCT+GGG - chr6.1:27207592-27207611 MS.gene054214:CDS 55.0%
TCATGGGCCGAGATATGCAG+TGG - chr6.1:27207093-27207112 MS.gene054214:intron 55.0%
TCCAACCTTCCCATAGCCTC+AGG + chr6.1:27207930-27207949 None:intergenic 55.0%
TGAGGCGAGGCCCATACTTA+GGG - chr6.1:27207320-27207339 MS.gene054214:intron 55.0%
! AAGTATGCCTCCGGCATTGG+TGG + chr6.1:27207552-27207571 None:intergenic 55.0%
! AGATGGGCTTGCAATGGGCT+TGG - chr6.1:27207020-27207039 MS.gene054214:intron 55.0%
! CACCATTGGCTGATGGTGCT+GGG + chr6.1:27207257-27207276 None:intergenic 55.0%
! CCAATGCCGGAGGCATACTT+TGG - chr6.1:27207552-27207571 MS.gene054214:CDS 55.0%
! TCACCATTGGCTGATGGTGC+TGG + chr6.1:27207258-27207277 None:intergenic 55.0%
!! AGTATGCCTCCGGCATTGGT+GGG + chr6.1:27207551-27207570 None:intergenic 55.0%
!! CACCTTTGACTGATGGTGGC+GGG + chr6.1:27207302-27207321 None:intergenic 55.0%
!!! CGGGTTTTAGGTCACGTGCA+AGG + chr6.1:27207479-27207498 None:intergenic 55.0%
AGTGAACCCACCAATGCCGG+AGG - chr6.1:27207542-27207561 MS.gene054214:CDS 60.0%
CAAAAGCCCAGCAGCCGTGA+CGG + chr6.1:27207601-27207620 None:intergenic 60.0%
CTCCTTCCTCCACTCTTGCC+AGG + chr6.1:27207882-27207901 None:intergenic 60.0%
GCCTGAGGCTATGGGAAGGT+TGG - chr6.1:27207926-27207945 MS.gene054214:CDS 60.0%
GTGAGGCGAGGCCCATACTT+AGG - chr6.1:27207319-27207338 MS.gene054214:intron 60.0%
TGGAGCCTGAGGCTATGGGA+AGG - chr6.1:27207922-27207941 MS.gene054214:CDS 60.0%
TGGGCCGAGATATGCAGTGG+TGG - chr6.1:27207096-27207115 MS.gene054214:intron 60.0%
! ACCTCACCGTTGGCTGATGG+TGG + chr6.1:27207216-27207235 None:intergenic 60.0%
!! AAGCACCGAATTGTGGCGGG+TGG + chr6.1:27207629-27207648 None:intergenic 60.0%
!! AGCACCGAATTGTGGCGGGT+GGG + chr6.1:27207628-27207647 None:intergenic 60.0%
!! TCACCGTTGGCTGATGGTGG+CGG + chr6.1:27207213-27207232 None:intergenic 60.0%
CTCTCCCTACCCGAGCCCAA+AGG - chr6.1:27207186-27207205 MS.gene054214:intron 65.0%
CTTTGGGCTCGGGTAGGGAG+AGG + chr6.1:27207188-27207207 None:intergenic 65.0%
GCCACCATCAGCCAACGGTG+AGG - chr6.1:27207212-27207231 MS.gene054214:intron 65.0%
GGCCCAGCACCATCAGCCAA+TGG - chr6.1:27207252-27207271 MS.gene054214:intron 65.0%
GGCCCGCCACCATCAGTCAA+AGG - chr6.1:27207297-27207316 MS.gene054214:intron 65.0%
GGTCACGTGCAAGGCTCACG+TGG + chr6.1:27207470-27207489 None:intergenic 65.0%
! CACGGCTGCTGGGCTTTTGG+CGG - chr6.1:27207602-27207621 MS.gene054214:CDS 65.0%
! CGTCACGGCTGCTGGGCTTT+TGG - chr6.1:27207599-27207618 MS.gene054214:CDS 65.0%
!! ACTGATGGTGGCGGGCCTTC+GGG + chr6.1:27207294-27207313 None:intergenic 65.0%
!! CACCGTTGGCTGATGGTGGC+GGG + chr6.1:27207212-27207231 None:intergenic 65.0%
!! GACTGATGGTGGCGGGCCTT+CGG + chr6.1:27207295-27207314 None:intergenic 65.0%
!! GCTGATGGTGGCGGGCCTTT+GGG + chr6.1:27207204-27207223 None:intergenic 65.0%
CGGGCCTTTGGGCTCGGGTA+GGG + chr6.1:27207193-27207212 None:intergenic 70.0%
GCGGCCCACCCGCCACAATT+CGG - chr6.1:27207621-27207640 MS.gene054214:CDS 70.0%
GGCCCGCCACCATCAGCCAA+CGG - chr6.1:27207207-27207226 MS.gene054214:intron 70.0%
!! GGCTGATGGTGGCGGGCCTT+TGG + chr6.1:27207205-27207224 None:intergenic 70.0%
!! TGGTGGCGGGCCTTTGGGCT+CGG + chr6.1:27207199-27207218 None:intergenic 70.0%
GCGGGCCTTTGGGCTCGGGT+AGG + chr6.1:27207194-27207213 None:intergenic 75.0%
!! GGTGGCGGGCCTTTGGGCTC+GGG + chr6.1:27207198-27207217 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 27204277 27207980 27204277 ID=MS.gene054214
chr6.1 mRNA 27204277 27207980 27204277 ID=MS.gene054214.t1;Parent=MS.gene054214
chr6.1 exon 27207531 27207980 27207531 ID=MS.gene054214.t1.exon1;Parent=MS.gene054214.t1
chr6.1 CDS 27207531 27207980 27207531 ID=cds.MS.gene054214.t1;Parent=MS.gene054214.t1
chr6.1 exon 27204277 27205251 27204277 ID=MS.gene054214.t1.exon2;Parent=MS.gene054214.t1
chr6.1 CDS 27204277 27205251 27204277 ID=cds.MS.gene054214.t1;Parent=MS.gene054214.t1
Gene Sequence

>MS.gene054214

ATGTCAAGTGAAGTAGTCAAGAATGAAGAATCTCTAAATGTGAAAATCACTAGCAAAAGCTATGTGAAACCTGAGGAAAAAATTGGGAAAAAGGAGTATCAATTGGTCACATTTGACCTACCTTACTTAGCTTTTTACTACAACCAAAAATTAATTTTTTACAAAGGAGGTAACTTTGAAGAAAATGTTGAGAAACTCAAGAATGGGCTTAGTGTAGTTTTGAAGGAGTTTCATCAACTAGCTGGTAAATTAGGAAAAGATGAAGAGGGTGTGTTTTTTGTTGAATATGATGATGACTTGGTTGGTGTTGAAGTTGTTGAAGCTGTTGCTGATGAGATTGGTGTTGAAGATCTAACTGTTGCTGAAAGTAGTGCCATTTTGAAGGAATTGATTCCTTATAGTGGAATCTTGAATTTGGAAGGCATGCATAGACCCTTGTTGGCTGTTCAGGTAATTTAAGTAATTTGTTAAATTTTGAAATTTGTTGTTAAATTAATTTATGTTCTTCTTTAGCCATTTCTAAATTGATTAAATTTTGAAATTTGTTATTAAATTAATTTATGTTCATCTTTAGCCATTTTTAAATTAAAATATACTACTAGGTGATTCCTACATTTAGGTTTTGATTTAATATTTTTTTATTAATTATTTTCTCAGTTTGCATTTTTTTATAGTTTTTATTTTCTTATAGTTATTCTCTTGCTAAATAATGTCACTCTTTTAAAATATTTAAAATCATAGCCTAAAGGGTCAACATTCAACTTGTTAATGCAAATGTGCAAAGATGTAAATATGATGAATGCTAAGATGAAAATTTACATTTACAGTTAATATGTGACTTGAGAGATCATAGTTTGGTTAAAGAGTCAAAGTCGTAAAAGTCCTAGAGTTCTCTCCAAATGCCAAATACTATCTAAATGTGGTTGTTAAGAAAAATCATAGTAAGATTGAAAACCACAAAACAAGGGATACATTTATCTAATTTGTATCAGATCTAATCCCATATATAACTTCCACAAATATAGAGATTTGCTATGTTTTCCTGTGTCTTGTTTTGATTTTTATTGTTCCTATTTTCCAATAATAGAATATCATTAAATAGGACAAATGAGATGAAGAGCTTGTTACAAATAAAAATAAAAATAATAGATGAAGAACAAGTACATTTTTGTTTAAAAAAGCCCAAGTAACAATTAGAGTAGAAGTAAGTTAATTAACTGTAGTATTTGCCAAATTACTCTTTTTTTACATTATATTTACCTTAAGGTATCTAGTTTTTGTACTTAAGTTGAGAAGCACACACATAGAACTTGATCTAAGGCATTATCAGTAATGAAATATAAATAAATATAATAGTTTTTTTTACAAATAATAAGTGTAATAGTTGAAAAGTTTGTGTATGTGGATTAAATTTTTAACCATATACATTGATTTTCCAACTATCACTTTTGTTTATATTTTATTTTGGAGGAGGTATTATTTAAACTCAAATGGCTTAGATGAGATAGCACGAATCTCTTCTATTTTAACTAAAATCGTAGTTTTGAATACAGACTTCAACATGCAGCAGCGTTAAAATTCTTAGAGAGAATTTAACGCCAATTTAGATTTAAAAAAATTTAAGGATTAGTTTCACGTTTATGCATGGAGAATACCCGGTTTGCATAAAACAAGATCTAAAGTATTCTAAGTATTTTAGATCAATCCACACAAGGAAAAGATCAGCCAACCACACATTGAGTCAAAAAAGATCAACCACACATTAAATACCTTATAGTAATGGTTGTTTAATCAGTTGTAAATCTTGTACCCAAAAAATAAATTTTAAATTCCGCAGAAAAATTAGTTGCAGTTCATAAATGAGTCATAAATCTCAACCAATAAAAAAGGATAAGATAAAAAAACACATCAATACGTTCCAAGTGTGCATTGCTCAACTTTTTTGTCAATGATAAATGCCAATCTACCTAGTGAATTTAATTTTCTTCAACTACAAACAATAAAATAAAGCCATTTGTTTATTAAGAGTGAATAATGTCATTTGATTTATAAATTATTATTAAGTTAGTTAAATTATGATGATGATTAATTGAAAAATTAAACTCTCTTAGTGCTAGAGCAATGCATGGCTTTGGTTATGACCGTTGATTATGATTAAACTAATTGTAGCCTAAGAAATGGTTAAAATAATTGTGTTGTTTTGTTTTCGGTGGCTCAAAAATAAATAAAAATGATAAATATTAAACTAATTGTATTCATATCCGACACCGGAAATCCTTGTTACATTTGCGCGTGATGATACTTAATTAAAAAAAAAAGTTATAATTTATAAGAGGATTTTGGAAGAACACATAATACACTCCTCTTCCCATATATAACTTCCAAAAATAAAGAGATTCACTTTGTTTTCCTATGTCCTCTTTTTGTTATTTTTTGACCAATAATATCATGAAATAAGACAAATGATACGTACGTTTTTGCTTGAAAAAACTCAAGTAACTATTCGAGTAAAAGTTTGATATATAATTGTACCGTTTGAAAAATTACCTTTGGTGTATTTAATAAATGGAATATTTAAAAATAAGCCAATCAATGTTGTTGGGAGAGTCTTCACATTCAGCATAAGACCCAACTTTCACATGTCATATTCACATTCTTTTCTTTACTTATTTTTGTGATTTTTTCTTTTCTCGTGATTTATAACTTGATTGCAATCTTGACTTTTCCAGCTAACAAAGCTCAAAGATGGGCTTGCAATGGGCTTGGCTTTTAACCATGCTGTCCTTGATGGAACATCCACGTGGCACTTTATGACTTCATGGGCCGAGATATGCAGTGGTGGACCCATCACAACAGCCCAACCATTCTTGGAACGAACCAAGGCTCGAAACACACGTGTGAAGCTTGACCTCTCCCTACCCGAGCCCAAAGGCCCGCCACCATCAGCCAACGGTGAGGTAAAGGATGAACAAAATGGCCCAGCACCATCAGCCAATGGTGAGGCAAAGGTTGAACCCGAAGGCCCGCCACCATCAGTCAAAGGTGAGGCGAGGCCCATACTTAGGGAAAAGATCTTCAAATTTTCCGAGTCAGCCATCGACAAAATCAAGTCAACAGTCAACCAAACCCTTCCATCAGACGGTTCAAAACCATTCTCAACATTTCAGGCTCTCTCCACTCATATTTGGCGCCACGTGAGCCTTGCACGTGACCTAAAACCCGAAGACTACACAGTGTTCACCGTCTTCGCAGACTGCAGAAAACGAGTGAACCCACCAATGCCGGAGGCATACTTTGGAAACCTAATTCAAGCTATATTCACCGTCACGGCTGCTGGGCTTTTGGCGGCCCACCCGCCACAATTCGGTGCTTCTTTGATCCAAAAGGTTATTGAAGGCCATGATGCTAAAGCTATTGATGAACGTAACAAAGAGTGGGAGAGTGCACCCAAGATTTTTCAATTCAAAGATGCTGGTGTGAATTGTGTTGCAGTTGGAAGTTCACCTAGGTTTAAGGTTTATGACATTGATTTTGGATTTGGGAAGCCAGAGATTGTGAGAAGTGGGACCAATAACAAATTTGATGGAATGATTTATTTGTATCCTGGCAAGAGTGGAGGAAGGAGCATTGATGTTGAATTAACATTGGAGCCTGAGGCTATGGGAAGGTTGGAGCAAGATAAGGAATTTCTTATGGAAGTATAA

Protein sequence

>MS.gene054214.t1

MSSEVVKNEESLNVKITSKSYVKPEEKIGKKEYQLVTFDLPYLAFYYNQKLIFYKGGNFEENVEKLKNGLSVVLKEFHQLAGKLGKDEEGVFFVEYDDDLVGVEVVEAVADEIGVEDLTVAESSAILKELIPYSGILNLEGMHRPLLAVQLTKLKDGLAMGLAFNHAVLDGTSTWHFMTSWAEICSGGPITTAQPFLERTKARNTRVKLDLSLPEPKGPPPSANGEVKDEQNGPAPSANGEAKVEPEGPPPSVKGEARPILREKIFKFSESAIDKIKSTVNQTLPSDGSKPFSTFQALSTHIWRHVSLARDLKPEDYTVFTVFADCRKRVNPPMPEAYFGNLIQAIFTVTAAGLLAAHPPQFGASLIQKVIEGHDAKAIDERNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGFGKPEIVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLEPEAMGRLEQDKEFLMEV