Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78701.t1 | RHN59613.1 | 99.1 | 115 | 1 | 0 | 1 | 115 | 32 | 146 | 6.60E-61 | 243 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78701.t1 | Q1RMP0 | 38.2 | 110 | 67 | 1 | 7 | 115 | 13 | 122 | 1.9e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78701.t1 | G7JQD3 | 99.1 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 4.8e-61 | 243.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26777 | MS.gene78701 | PPI |
| MS.gene78701 | MS.gene68633 | PPI |
| MS.gene022098 | MS.gene78701 | PPI |
| MS.gene78701 | MS.gene95440 | PPI |
| MS.gene78701 | MS.gene064140 | PPI |
| MS.gene78701 | MS.gene030166 | PPI |
| MS.gene78701 | MS.gene97308 | PPI |
| MS.gene78701 | MS.gene047813 | PPI |
| MS.gene78701 | MS.gene39636 | PPI |
| MS.gene43180 | MS.gene78701 | PPI |
| MS.gene78701 | MS.gene053492 | PPI |
| MS.gene78701 | MS.gene26516 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78701.t1 | MTR_3g102420 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 7.30e-83 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78701.t1 | AT3G25940 | 61.739 | 115 | 41 | 1 | 3 | 114 | 4 | 118 | 6.76e-45 | 142 |
| MS.gene78701.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene78701.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene78701.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene78701.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene78701.t1 | AT1G20065 | 56.000 | 50 | 22 | 0 | 3 | 52 | 4 | 53 | 1.69e-12 | 58.9 |
Find 26 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTTCTTCAGATATTAA+AGG | 0.236587 | 3.2:-84045865 | MS.gene78701:intron |
| TAATACCTGTCTGGTATAAA+AGG | 0.289694 | 3.2:+84043538 | None:intergenic |
| CCGATGTGGTCATCAGTTTC+AGG | 0.304135 | 3.2:-84043386 | MS.gene78701:CDS |
| CAAAACCAAGTGTAACATAA+AGG | 0.353007 | 3.2:-84046954 | MS.gene78701:CDS |
| ACAGAAGGTGCAATTGTCTA+AGG | 0.372837 | 3.2:-84043697 | MS.gene78701:intron |
| CAGGATATCAGAAGGGAACT+TGG | 0.428753 | 3.2:-84043738 | MS.gene78701:CDS |
| CAGATGAGATCGGCGGATGA+AGG | 0.477672 | 3.2:-84043433 | MS.gene78701:CDS |
| AAAACCAAGTGTAACATAAA+GGG | 0.477760 | 3.2:-84046953 | MS.gene78701:intron |
| CTGAAACTGATGACCACATC+GGG | 0.482135 | 3.2:+84043387 | None:intergenic |
| GAAGTCTCATAATACCTGTC+TGG | 0.504328 | 3.2:+84043529 | None:intergenic |
| TTTCTGTTCTGTCACTTGTG+TGG | 0.551638 | 3.2:-84047025 | MS.gene78701:CDS |
| AGATGAGATCGGCGGATGAA+GGG | 0.551664 | 3.2:-84043432 | MS.gene78701:CDS |
| TGTACCCTTTATGTTACACT+TGG | 0.568759 | 3.2:+84046949 | None:intergenic |
| CAACATGCGTAATCAGTTGA+GGG | 0.573529 | 3.2:+84046986 | None:intergenic |
| CGATCTAATTGAAGAACAGA+AGG | 0.578767 | 3.2:-84043712 | MS.gene78701:CDS |
| GTGGTTGGCAGGATATCAGA+AGG | 0.583152 | 3.2:-84043746 | MS.gene78701:intron |
| TTCCTAATTTCAGATGAGAT+CGG | 0.584414 | 3.2:-84043443 | MS.gene78701:intron |
| GCAACATGCGTAATCAGTTG+AGG | 0.588882 | 3.2:+84046985 | None:intergenic |
| AAGTTACACAATTTCTGCTG+AGG | 0.612146 | 3.2:-84045833 | MS.gene78701:intron |
| TCGCGACCACGTGAATACAT+TGG | 0.631343 | 3.2:+84047049 | None:intergenic |
| CTAATTTCAGATGAGATCGG+CGG | 0.632502 | 3.2:-84043440 | MS.gene78701:intron |
| CCTGAAACTGATGACCACAT+CGG | 0.635265 | 3.2:+84043386 | None:intergenic |
| TTCTACACATGCACCCGATG+TGG | 0.640930 | 3.2:-84043400 | MS.gene78701:CDS |
| TGGTTGGCAGGATATCAGAA+GGG | 0.653540 | 3.2:-84043745 | MS.gene78701:intron |
| CTTGTGTGGAACAATGCTCA+CGG | 0.660985 | 3.2:-84047011 | MS.gene78701:CDS |
| ACAGTGCCAATGTATTCACG+TGG | 0.744012 | 3.2:-84047055 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTGTATTTATATTTTTTTTT+TGG | - | chr3.2:84045017-84045036 | MS.gene78701:intron | 10.0% |
| !! | ATGTATGTGAAAATAAAATT+TGG | - | chr3.2:84043642-84043661 | MS.gene78701:intron | 15.0% |
| !! | TATATATGGAAATAAACATT+AGG | - | chr3.2:84043955-84043974 | MS.gene78701:intron | 15.0% |
| !!! | ACATTTTTTACAACTTAATA+GGG | + | chr3.2:84044128-84044147 | None:intergenic | 15.0% |
| !!! | ATTCACAAATTATTGATTAT+TGG | - | chr3.2:84046634-84046653 | MS.gene78701:intron | 15.0% |
| !!! | TACATTTTTTACAACTTAAT+AGG | + | chr3.2:84044129-84044148 | None:intergenic | 15.0% |
| !!! | TGTTTTTATGTTAATGATAA+TGG | - | chr3.2:84044191-84044210 | MS.gene78701:intron | 15.0% |
| !! | ATTTAATGACATGATCTTTA+AGG | - | chr3.2:84046770-84046789 | MS.gene78701:intron | 20.0% |
| !! | CAAATAACAACACTTATATA+TGG | - | chr3.2:84043941-84043960 | MS.gene78701:intron | 20.0% |
| !! | GGATATAACATGTTTAAATT+GGG | + | chr3.2:84044645-84044664 | None:intergenic | 20.0% |
| !! | TAAATATAACAGAGCTAATA+TGG | + | chr3.2:84046399-84046418 | None:intergenic | 20.0% |
| !! | TAACGATAAATCATTCTTAT+CGG | + | chr3.2:84045233-84045252 | None:intergenic | 20.0% |
| !! | TATGATTCATCAGTTAAAAT+AGG | - | chr3.2:84044384-84044403 | MS.gene78701:intron | 20.0% |
| !! | TGGATATAACATGTTTAAAT+TGG | + | chr3.2:84044646-84044665 | None:intergenic | 20.0% |
| !!! | AGAAGTATGAATGAATAATT+TGG | - | chr3.2:84046533-84046552 | MS.gene78701:intron | 20.0% |
| !!! | ATTTTTATATTGAAAGAGCA+AGG | - | chr3.2:84043708-84043727 | MS.gene78701:CDS | 20.0% |
| !!! | CATTTTTTACAACTTAATAG+GGG | + | chr3.2:84044127-84044146 | None:intergenic | 20.0% |
| !!! | TCCTTTTCATTATTTTTTCT+GGG | + | chr3.2:84045061-84045080 | None:intergenic | 20.0% |
| !!! | TTCCTTTTCATTATTTTTTC+TGG | + | chr3.2:84045062-84045081 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTTTCTCTACAA+TGG | - | chr3.2:84045832-84045851 | MS.gene78701:intron | 20.0% |
| ! | AAAACCAAGTGTAACATAAA+GGG | - | chr3.2:84043471-84043490 | MS.gene78701:intron | 25.0% |
| ! | AAATCAAGATATCGTTTACT+TGG | + | chr3.2:84046473-84046492 | None:intergenic | 25.0% |
| ! | AACGATAAATCATTCTTATC+GGG | + | chr3.2:84045232-84045251 | None:intergenic | 25.0% |
| ! | AATAATGAAAAGGAAACTAC+CGG | - | chr3.2:84045067-84045086 | MS.gene78701:intron | 25.0% |
| ! | AGTGATATAATCATAGGATA+GGG | + | chr3.2:84044670-84044689 | None:intergenic | 25.0% |
| ! | ATGACAATTGGAAAAGAATT+TGG | + | chr3.2:84045968-84045987 | None:intergenic | 25.0% |
| ! | ATTCAGTTAGGACTTATAAT+GGG | + | chr3.2:84044535-84044554 | None:intergenic | 25.0% |
| ! | GAAAATAAAATTTGGTCTGT+AGG | - | chr3.2:84043650-84043669 | MS.gene78701:intron | 25.0% |
| ! | GAACATAGTGATATAATCAT+AGG | + | chr3.2:84044676-84044695 | None:intergenic | 25.0% |
| ! | GATTTGTCTTCAATTAATTG+AGG | - | chr3.2:84044049-84044068 | MS.gene78701:intron | 25.0% |
| ! | TAGTGATATAATCATAGGAT+AGG | + | chr3.2:84044671-84044690 | None:intergenic | 25.0% |
| ! | TGTCATTAAATACATATTGC+AGG | + | chr3.2:84046761-84046780 | None:intergenic | 25.0% |
| ! | TGTTAAGTTTGTAGCTTAAA+TGG | - | chr3.2:84043570-84043589 | MS.gene78701:CDS | 25.0% |
| ! | TTGTCTTCTTCAGATATTAA+AGG | - | chr3.2:84044559-84044578 | MS.gene78701:intron | 25.0% |
| ! | TTTAATATCTGAAGAAGACA+AGG | + | chr3.2:84044560-84044579 | None:intergenic | 25.0% |
| !! | AATCTTGATTTGAATTTCAC+TGG | - | chr3.2:84046115-84046134 | MS.gene78701:intron | 25.0% |
| !! | ATCTTGATTTGAATTTCACT+GGG | - | chr3.2:84046116-84046135 | MS.gene78701:intron | 25.0% |
| !! | TAGATTTCTTCTCTATTTTC+TGG | - | chr3.2:84044853-84044872 | MS.gene78701:intron | 25.0% |
| !!! | AGTGAATCAAAATTTCTAGT+TGG | - | chr3.2:84043610-84043629 | MS.gene78701:intron | 25.0% |
| !!! | ATAAACATTAGGTGTTTTTG+TGG | - | chr3.2:84043966-84043985 | MS.gene78701:intron | 25.0% |
| !!! | CAAATTGAAAGAGTATCATA+TGG | + | chr3.2:84045546-84045565 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGGGATACAAGA+GGG | - | chr3.2:84045029-84045048 | MS.gene78701:intron | 25.0% |
| !!! | TTTTTTTTTTGGGATACAAG+AGG | - | chr3.2:84045028-84045047 | MS.gene78701:intron | 25.0% |
| AACAAGACATGTGAAAAATG+TGG | - | chr3.2:84046849-84046868 | MS.gene78701:intron | 30.0% | |
| AATACTCATGATAACTGCTT+GGG | - | chr3.2:84045332-84045351 | MS.gene78701:intron | 30.0% | |
| AATTGTTTACTGCATATGCA+AGG | + | chr3.2:84044462-84044481 | None:intergenic | 30.0% | |
| ACAATTGGAAAAGAATTTGG+AGG | + | chr3.2:84045965-84045984 | None:intergenic | 30.0% | |
| ATATAACAGAGCTAATATGG+AGG | + | chr3.2:84046396-84046415 | None:intergenic | 30.0% | |
| ATATAATCATAGGATAGGGA+TGG | + | chr3.2:84044666-84044685 | None:intergenic | 30.0% | |
| ATATATAAGCACAATGCCAA+GGG | - | chr3.2:84043914-84043933 | MS.gene78701:intron | 30.0% | |
| ATATCACTATGTTCTATCAC+TGG | - | chr3.2:84044682-84044701 | MS.gene78701:intron | 30.0% | |
| CAAAACCAAGTGTAACATAA+AGG | - | chr3.2:84043470-84043489 | MS.gene78701:intron | 30.0% | |
| CATTCAGTTAGGACTTATAA+TGG | + | chr3.2:84044536-84044555 | None:intergenic | 30.0% | |
| GCAGAAAATTCAGTAACTAA+TGG | + | chr3.2:84045271-84045290 | None:intergenic | 30.0% | |
| GCCCAGAAAAAATAATGAAA+AGG | - | chr3.2:84045057-84045076 | MS.gene78701:intron | 30.0% | |
| TAATACCTGTCTGGTATAAA+AGG | + | chr3.2:84046889-84046908 | None:intergenic | 30.0% | |
| TAATACTCATGATAACTGCT+TGG | - | chr3.2:84045331-84045350 | MS.gene78701:intron | 30.0% | |
| TATATGTACCTAAGTCATAG+CGG | + | chr3.2:84044977-84044996 | None:intergenic | 30.0% | |
| TATCTTGATTTACTTTGTCG+TGG | - | chr3.2:84046482-84046501 | MS.gene78701:intron | 30.0% | |
| TCAGTTAAAATAGGCTTCTA+TGG | - | chr3.2:84044393-84044412 | MS.gene78701:intron | 30.0% | |
| TCTCTACAATGGATACAATA+TGG | - | chr3.2:84045843-84045862 | MS.gene78701:CDS | 30.0% | |
| TGATATCAAAATCCTAACCT+AGG | + | chr3.2:84046575-84046594 | None:intergenic | 30.0% | |
| TGGATGATATATGATAAGAG+TGG | + | chr3.2:84044910-84044929 | None:intergenic | 30.0% | |
| TTCCTAATTTCAGATGAGAT+CGG | - | chr3.2:84046981-84047000 | MS.gene78701:CDS | 30.0% | |
| TTGAAATATCAACCTAGGTT+AGG | - | chr3.2:84046560-84046579 | MS.gene78701:intron | 30.0% | |
| TTTGACTCAAGTTTGAATAC+TGG | - | chr3.2:84043735-84043754 | MS.gene78701:CDS | 30.0% | |
| ! | AAACTAGCTTCAAATTAGAC+TGG | + | chr3.2:84046934-84046953 | None:intergenic | 30.0% |
| !! | ACCTAGGTTGATATTTCAAA+AGG | + | chr3.2:84046559-84046578 | None:intergenic | 30.0% |
| !! | TGGTAATGGAATGATTACAA+TGG | + | chr3.2:84046279-84046298 | None:intergenic | 30.0% |
| !! | TGTTGTTGTTGTTTGTTTAC+AGG | - | chr3.2:84046824-84046843 | MS.gene78701:intron | 30.0% |
| !!! | TCATTATTTTTTCTGGGCTT+AGG | + | chr3.2:84045055-84045074 | None:intergenic | 30.0% |
| AAAAAGCTCTTAACTCTCTC+AGG | - | chr3.2:84045930-84045949 | MS.gene78701:intron | 35.0% | |
| AACTACCGGTAAACTAAAAG+AGG | - | chr3.2:84045081-84045100 | MS.gene78701:intron | 35.0% | |
| AAGAACCACATTCAGTCAAA+TGG | - | chr3.2:84045770-84045789 | MS.gene78701:intron | 35.0% | |
| AAGATATCGTTTACTTGGCT+GGG | + | chr3.2:84046468-84046487 | None:intergenic | 35.0% | |
| AAGTTACACAATTTCTGCTG+AGG | - | chr3.2:84044591-84044610 | MS.gene78701:intron | 35.0% | |
| AATGATCCTTGTGTACTTTG+TGG | - | chr3.2:84046659-84046678 | MS.gene78701:intron | 35.0% | |
| AATGGGAAAGTAATTAGCAG+TGG | + | chr3.2:84045676-84045695 | None:intergenic | 35.0% | |
| ACATGTGAAAAATGTGGTCA+TGG | - | chr3.2:84046855-84046874 | MS.gene78701:intron | 35.0% | |
| ACTTCTCTCCATCTGTTAAT+TGG | - | chr3.2:84045572-84045591 | MS.gene78701:intron | 35.0% | |
| AGTACTTGTTCTCTGTTATG+TGG | + | chr3.2:84046011-84046030 | None:intergenic | 35.0% | |
| ATGGAATGATTACAATGGCT+TGG | + | chr3.2:84046274-84046293 | None:intergenic | 35.0% | |
| ATGTGGTTCTTACAAGCATA+AGG | + | chr3.2:84045761-84045780 | None:intergenic | 35.0% | |
| ATTGTGACTCTGTTCAAGAA+GGG | + | chr3.2:84044886-84044905 | None:intergenic | 35.0% | |
| CATATATAAGCACAATGCCA+AGG | - | chr3.2:84043913-84043932 | MS.gene78701:intron | 35.0% | |
| CGATCTAATTGAAGAACAGA+AGG | - | chr3.2:84046712-84046731 | MS.gene78701:intron | 35.0% | |
| CTATGGACAGAAATGACAAT+TGG | + | chr3.2:84045980-84045999 | None:intergenic | 35.0% | |
| CTATGGTGTAAAGTGATGAA+AGG | + | chr3.2:84046422-84046441 | None:intergenic | 35.0% | |
| CTTCTCTCCATCTGTTAATT+GGG | - | chr3.2:84045573-84045592 | MS.gene78701:intron | 35.0% | |
| GATCATGGAAAAATGCACTA+TGG | + | chr3.2:84046439-84046458 | None:intergenic | 35.0% | |
| GCTAGTATTTCATACTCCTT+AGG | - | chr3.2:84044251-84044270 | MS.gene78701:intron | 35.0% | |
| GCTGATATGAATTTATGTCC+AGG | + | chr3.2:84046062-84046081 | None:intergenic | 35.0% | |
| GGAATGACCAAATGATTGAT+TGG | + | chr3.2:84046145-84046164 | None:intergenic | 35.0% | |
| TAATCCAGAATTTAGTCTGG+AGG | + | chr3.2:84043791-84043810 | None:intergenic | 35.0% | |
| TACTCATATTGAGCGAAGTT+TGG | - | chr3.2:84046308-84046327 | MS.gene78701:intron | 35.0% | |
| TATATAAGCACAATGCCAAG+GGG | - | chr3.2:84043915-84043934 | MS.gene78701:intron | 35.0% | |
| TATTGTGACTCTGTTCAAGA+AGG | + | chr3.2:84044887-84044906 | None:intergenic | 35.0% | |
| TGGTAATCCAGAATTTAGTC+TGG | + | chr3.2:84043794-84043813 | None:intergenic | 35.0% | |
| TGTACCCTTTATGTTACACT+TGG | + | chr3.2:84043478-84043497 | None:intergenic | 35.0% | |
| TGTGATTCATGTCATGTGTA+AGG | - | chr3.2:84044325-84044344 | MS.gene78701:intron | 35.0% | |
| TTACATCATCAAGATACCTC+TGG | - | chr3.2:84045115-84045134 | MS.gene78701:intron | 35.0% | |
| TTGATTTACTTTGTCGTGGT+GGG | - | chr3.2:84046486-84046505 | MS.gene78701:intron | 35.0% | |
| TTTCAAGCCCAATTAACAGA+TGG | + | chr3.2:84045583-84045602 | None:intergenic | 35.0% | |
| TTTGACAGCATTCTCATTGA+CGG | + | chr3.2:84045728-84045747 | None:intergenic | 35.0% | |
| ! | AAACACACTAGCATTGAACA+TGG | + | chr3.2:84044930-84044949 | None:intergenic | 35.0% |
| ! | AGAGAGTTAAGAGCTTTTTG+TGG | + | chr3.2:84045929-84045948 | None:intergenic | 35.0% |
| ! | ATAGGCTTCTATGGTGTTTT+TGG | - | chr3.2:84044402-84044421 | MS.gene78701:intron | 35.0% |
| ! | CAATATGAGTATCGTTCTGT+TGG | + | chr3.2:84046299-84046318 | None:intergenic | 35.0% |
| !! | AAAGAGTATCATATGGCTCA+AGG | + | chr3.2:84045539-84045558 | None:intergenic | 35.0% |
| !! | AAGAGTATCATATGGCTCAA+GGG | + | chr3.2:84045538-84045557 | None:intergenic | 35.0% |
| !! | CATTAGCTTGTCATCAACTT+TGG | + | chr3.2:84045640-84045659 | None:intergenic | 35.0% |
| !! | GAGGTATCTTGATGATGTAA+AGG | + | chr3.2:84045115-84045134 | None:intergenic | 35.0% |
| !! | TGTTGTTATTTGTTACCCCT+TGG | + | chr3.2:84043933-84043952 | None:intergenic | 35.0% |
| !!! | CATTAGTTTTTAAGCTCCCA+TGG | - | chr3.2:84045895-84045914 | MS.gene78701:intron | 35.0% |
| !!! | GCCTTTTGAAATATCAACCT+AGG | - | chr3.2:84046555-84046574 | MS.gene78701:intron | 35.0% |
| !!! | TTACACTTGGTTTTGCACAA+GGG | + | chr3.2:84043465-84043484 | None:intergenic | 35.0% |
| AAAGTGTGTGTTAGTGCCAA+TGG | + | chr3.2:84045306-84045325 | None:intergenic | 40.0% | |
| AACACACAGATGTCTTGTGA+AGG | + | chr3.2:84044172-84044191 | None:intergenic | 40.0% | |
| ACGTGAATTGCACAGTTGAA+TGG | + | chr3.2:84045694-84045713 | None:intergenic | 40.0% | |
| ATCCTTGTGTACTTTGTGGT+TGG | - | chr3.2:84046663-84046682 | MS.gene78701:intron | 40.0% | |
| ATTAGCAGTGGAGAGACTAT+TGG | + | chr3.2:84045664-84045683 | None:intergenic | 40.0% | |
| ATTGTGGAAGACTATGGTGA+GGG | + | chr3.2:84046339-84046358 | None:intergenic | 40.0% | |
| ATTTCATACTCCTTAGGTGC+AGG | - | chr3.2:84044257-84044276 | MS.gene78701:intron | 40.0% | |
| CAACATGCGTAATCAGTTGA+GGG | + | chr3.2:84043441-84043460 | None:intergenic | 40.0% | |
| CAAGATATCGTTTACTTGGC+TGG | + | chr3.2:84046469-84046488 | None:intergenic | 40.0% | |
| CACAACAGGTTCATATCAGT+TGG | + | chr3.2:84045488-84045507 | None:intergenic | 40.0% | |
| CGTGAATTGCACAGTTGAAT+GGG | + | chr3.2:84045693-84045712 | None:intergenic | 40.0% | |
| CTAATTTCAGATGAGATCGG+CGG | - | chr3.2:84046984-84047003 | MS.gene78701:CDS | 40.0% | |
| CTTACCTCCAGACTAAATTC+TGG | - | chr3.2:84043784-84043803 | MS.gene78701:intron | 40.0% | |
| CTTGATTTACTTTGTCGTGG+TGG | - | chr3.2:84046485-84046504 | MS.gene78701:intron | 40.0% | |
| GAAGACAAGGACATTCAGTT+AGG | + | chr3.2:84044547-84044566 | None:intergenic | 40.0% | |
| GAAGTCTCATAATACCTGTC+TGG | + | chr3.2:84046898-84046917 | None:intergenic | 40.0% | |
| GAATCATAGTTGGATTGCTG+CGG | + | chr3.2:84046252-84046271 | None:intergenic | 40.0% | |
| GACACTTTGCACTTTCTGTT+TGG | + | chr3.2:84043850-84043869 | None:intergenic | 40.0% | |
| GATTGATCAAGGATTCAAGG+CGG | + | chr3.2:84045376-84045395 | None:intergenic | 40.0% | |
| GGGTTGGGTAGAATTGAATA+GGG | + | chr3.2:84045451-84045470 | None:intergenic | 40.0% | |
| GGTGATTGATCAAGGATTCA+AGG | + | chr3.2:84045379-84045398 | None:intergenic | 40.0% | |
| GTTATGTGGTCATGCTTCTA+TGG | + | chr3.2:84045997-84046016 | None:intergenic | 40.0% | |
| TACCTCTGGCTAATCTGATT+AGG | - | chr3.2:84045129-84045148 | MS.gene78701:intron | 40.0% | |
| TGCATATGCAAGGACAGTAA+CGG | + | chr3.2:84044452-84044471 | None:intergenic | 40.0% | |
| TGGAAAAGAATTTGGAGGCT+GGG | + | chr3.2:84045960-84045979 | None:intergenic | 40.0% | |
| TGGGCAACCAATCAATCATT+TGG | - | chr3.2:84046135-84046154 | MS.gene78701:intron | 40.0% | |
| TGGGTAGAATTGAATAGGGA+TGG | + | chr3.2:84045447-84045466 | None:intergenic | 40.0% | |
| TTAGCAGTGGAGAGACTATT+GGG | + | chr3.2:84045663-84045682 | None:intergenic | 40.0% | |
| TTATGTCCAGGAGATGTGTT+TGG | + | chr3.2:84046050-84046069 | None:intergenic | 40.0% | |
| TTCTGCATTGTGGAAGACTA+TGG | + | chr3.2:84046345-84046364 | None:intergenic | 40.0% | |
| TTGACAGCATTCTCATTGAC+GGG | + | chr3.2:84045727-84045746 | None:intergenic | 40.0% | |
| TTGGAAAAGAATTTGGAGGC+TGG | + | chr3.2:84045961-84045980 | None:intergenic | 40.0% | |
| TTTCATACTCCTTAGGTGCA+GGG | - | chr3.2:84044258-84044277 | MS.gene78701:intron | 40.0% | |
| ! | ACAGAAGGTGCAATTGTCTA+AGG | - | chr3.2:84046727-84046746 | MS.gene78701:intron | 40.0% |
| ! | ACTTGCCATTTGACTGAATG+TGG | + | chr3.2:84045778-84045797 | None:intergenic | 40.0% |
| ! | CAATGGCTTGGAATCATAGT+TGG | + | chr3.2:84046262-84046281 | None:intergenic | 40.0% |
| ! | GAGTATCGTTCTGTTGGTAA+TGG | + | chr3.2:84046293-84046312 | None:intergenic | 40.0% |
| ! | TTTCTGTTCTGTCACTTGTG+TGG | - | chr3.2:84043399-84043418 | MS.gene78701:CDS | 40.0% |
| !! | ACTGAAACTTGCTGCAGATT+TGG | - | chr3.2:84046197-84046216 | MS.gene78701:intron | 40.0% |
| !! | CTTGTCATCAACTTTGGAGT+TGG | + | chr3.2:84045634-84045653 | None:intergenic | 40.0% |
| !! | TAGTTTTTAAGCTCCCATGG+AGG | - | chr3.2:84045898-84045917 | MS.gene78701:intron | 40.0% |
| !! | TCACTGGCTTATAGTTCCTA+CGG | - | chr3.2:84044698-84044717 | MS.gene78701:intron | 40.0% |
| !!! | AGCTTTGGAGAGTTTTGCTT+GGG | + | chr3.2:84045410-84045429 | None:intergenic | 40.0% |
| !!! | CCACTCCTCTTTTAGTTTAC+CGG | + | chr3.2:84045089-84045108 | None:intergenic | 40.0% |
| !!! | GTTACACTTGGTTTTGCACA+AGG | + | chr3.2:84043466-84043485 | None:intergenic | 40.0% |
| !!! | TACACTTGGTTTTGCACAAG+GGG | + | chr3.2:84043464-84043483 | None:intergenic | 40.0% |
| AAACTGCCAAACACATCTCC+TGG | - | chr3.2:84046041-84046060 | MS.gene78701:intron | 45.0% | |
| AACCACTGCACACTTTGCAA+AGG | - | chr3.2:84044757-84044776 | MS.gene78701:intron | 45.0% | |
| AATTCTACCCAACCCGTCAA+AGG | - | chr3.2:84045456-84045475 | MS.gene78701:intron | 45.0% | |
| AGTAACTAATGGAGCGTGAG+TGG | + | chr3.2:84045260-84045279 | None:intergenic | 45.0% | |
| AGTTGGAAACCTCCTTTGAC+GGG | + | chr3.2:84045471-84045490 | None:intergenic | 45.0% | |
| AGTTTCAGTAGCAGCAGGAT+TGG | + | chr3.2:84046186-84046205 | None:intergenic | 45.0% | |
| ATCCTTTGCAAAGTGTGCAG+TGG | + | chr3.2:84044762-84044781 | None:intergenic | 45.0% | |
| ATGTACCTAAGTCATAGCGG+AGG | + | chr3.2:84044974-84044993 | None:intergenic | 45.0% | |
| CAGGATATCAGAAGGGAACT+TGG | - | chr3.2:84046686-84046705 | MS.gene78701:intron | 45.0% | |
| CAGTTGGAAACCTCCTTTGA+CGG | + | chr3.2:84045472-84045491 | None:intergenic | 45.0% | |
| CATTGTGGAAGACTATGGTG+AGG | + | chr3.2:84046340-84046359 | None:intergenic | 45.0% | |
| CCGGTAAACTAAAAGAGGAG+TGG | - | chr3.2:84045086-84045105 | MS.gene78701:intron | 45.0% | |
| CCTGAAACTGATGACCACAT+CGG | + | chr3.2:84047041-84047060 | None:intergenic | 45.0% | |
| CTGAAACTGATGACCACATC+GGG | + | chr3.2:84047040-84047059 | None:intergenic | 45.0% | |
| CTGCAGATGGTGATTGATCA+AGG | + | chr3.2:84045387-84045406 | None:intergenic | 45.0% | |
| CTTGTGTGGAACAATGCTCA+CGG | - | chr3.2:84043413-84043432 | MS.gene78701:CDS | 45.0% | |
| GAAAAGAATTTGGAGGCTGG+GGG | + | chr3.2:84045958-84045977 | None:intergenic | 45.0% | |
| GCAACATGCGTAATCAGTTG+AGG | + | chr3.2:84043442-84043461 | None:intergenic | 45.0% | |
| GGAAAAGAATTTGGAGGCTG+GGG | + | chr3.2:84045959-84045978 | None:intergenic | 45.0% | |
| GTAACTAATGGAGCGTGAGT+GGG | + | chr3.2:84045259-84045278 | None:intergenic | 45.0% | |
| GTGTGCGTTGCTTCAATACA+TGG | + | chr3.2:84044010-84044029 | None:intergenic | 45.0% | |
| TACCAGAGTGCAATTCGTCA+GGG | - | chr3.2:84043809-84043828 | MS.gene78701:intron | 45.0% | |
| TGACAGCATTCTCATTGACG+GGG | + | chr3.2:84045726-84045745 | None:intergenic | 45.0% | |
| TGCCAACCACAAAGTACACA+AGG | + | chr3.2:84046668-84046687 | None:intergenic | 45.0% | |
| TGGTTGGCAGGATATCAGAA+GGG | - | chr3.2:84046679-84046698 | MS.gene78701:intron | 45.0% | |
| TGTGTGTTAGTGCCAATGGT+TGG | + | chr3.2:84045302-84045321 | None:intergenic | 45.0% | |
| TTACCAGAGTGCAATTCGTC+AGG | - | chr3.2:84043808-84043827 | MS.gene78701:intron | 45.0% | |
| TTCATACTCCTTAGGTGCAG+GGG | - | chr3.2:84044259-84044278 | MS.gene78701:intron | 45.0% | |
| TTGGCTGGGAACATAGATCA+TGG | + | chr3.2:84046454-84046473 | None:intergenic | 45.0% | |
| TTGTGTACTTTGTGGTTGGC+AGG | - | chr3.2:84046667-84046686 | MS.gene78701:intron | 45.0% | |
| ! | AGCTGCCTTTTATACCAGAC+AGG | - | chr3.2:84046881-84046900 | MS.gene78701:intron | 45.0% |
| ! | CGCCGATCTCATCTGAAATT+AGG | + | chr3.2:84046986-84047005 | None:intergenic | 45.0% |
| ! | CGGGTTGGGTAGAATTGAAT+AGG | + | chr3.2:84045452-84045471 | None:intergenic | 45.0% |
| ! | GTCCTAATCAGATTAGCCAG+AGG | + | chr3.2:84045134-84045153 | None:intergenic | 45.0% |
| ! | TACTTTGTCGTGGTGGGATA+TGG | - | chr3.2:84046492-84046511 | MS.gene78701:intron | 45.0% |
| ! | TGGTGGATGCAAGTGGAAAT+CGG | + | chr3.2:84046166-84046185 | None:intergenic | 45.0% |
| !! | GAAACTTGCTGCAGATTTGG+TGG | - | chr3.2:84046200-84046219 | MS.gene78701:intron | 45.0% |
| !! | TTTTGTGGCTTGTCCTCCAT+GGG | + | chr3.2:84045914-84045933 | None:intergenic | 45.0% |
| !! | TTTTTGTGGCTTGTCCTCCA+TGG | + | chr3.2:84045915-84045934 | None:intergenic | 45.0% |
| !!! | GAGCTTTGGAGAGTTTTGCT+TGG | + | chr3.2:84045411-84045430 | None:intergenic | 45.0% |
| !!! | TGTATTTATATTTTTTTTTT+GGG | - | chr3.2:84045018-84045037 | MS.gene78701:intron | 5.0% |
| AATAGGGATGGAGCCAGCAT+AGG | + | chr3.2:84045435-84045454 | None:intergenic | 50.0% | |
| AGATGAGATCGGCGGATGAA+GGG | - | chr3.2:84046992-84047011 | MS.gene78701:CDS | 50.0% | |
| AGGGCTGAAGCTGTGATCAA+TGG | + | chr3.2:84045519-84045538 | None:intergenic | 50.0% | |
| ATCCCTGACGAATTGCACTC+TGG | + | chr3.2:84043814-84043833 | None:intergenic | 50.0% | |
| CAGCAAGTTTCAGTAGCAGC+AGG | + | chr3.2:84046191-84046210 | None:intergenic | 50.0% | |
| CCGATGTGGTCATCAGTTTC+AGG | - | chr3.2:84047038-84047057 | MS.gene78701:CDS | 50.0% | |
| CTGAAGCTGTGATCAATGGC+AGG | + | chr3.2:84045515-84045534 | None:intergenic | 50.0% | |
| GAGTGCAATTCGTCAGGGAT+CGG | - | chr3.2:84043814-84043833 | MS.gene78701:intron | 50.0% | |
| GTGGTTGGCAGGATATCAGA+AGG | - | chr3.2:84046678-84046697 | MS.gene78701:intron | 50.0% | |
| TCATATCAGCCCCTAACTCC+TGG | - | chr3.2:84046072-84046091 | MS.gene78701:intron | 50.0% | |
| TGATCAAGGATTCAAGGCGG+TGG | + | chr3.2:84045373-84045392 | None:intergenic | 50.0% | |
| TTCAGTAGCAGCAGGATTGG+TGG | + | chr3.2:84046183-84046202 | None:intergenic | 50.0% | |
| TTCTACACATGCACCCGATG+TGG | - | chr3.2:84047024-84047043 | MS.gene78701:CDS | 50.0% | |
| ! | AGTTTTGCTTGGGCTGCAGA+TGG | + | chr3.2:84045400-84045419 | None:intergenic | 50.0% |
| ! | CAGCAGCTGATTCTGCATTG+TGG | + | chr3.2:84046355-84046374 | None:intergenic | 50.0% |
| ! | CTGCACTAGTCTCCAACCAT+TGG | - | chr3.2:84045287-84045306 | MS.gene78701:intron | 50.0% |
| ! | TACCTAAGTCATAGCGGAGG+TGG | + | chr3.2:84044971-84044990 | None:intergenic | 50.0% |
| !! | GAAACCTCCTTTGACGGGTT+GGG | + | chr3.2:84045466-84045485 | None:intergenic | 50.0% |
| !! | GCGGATGGACTTGCTAATGT+TGG | + | chr3.2:84045195-84045214 | None:intergenic | 50.0% |
| ACACCTAGTCACTCAGCCGT+AGG | + | chr3.2:84044717-84044736 | None:intergenic | 55.0% | |
| ATCCATTCTGCCTCCACACC+AGG | + | chr3.2:84046093-84046112 | None:intergenic | 55.0% | |
| CAATGGCAGGCATGCACAAC+AGG | + | chr3.2:84045502-84045521 | None:intergenic | 55.0% | |
| CAGATGAGATCGGCGGATGA+AGG | - | chr3.2:84046991-84047010 | MS.gene78701:CDS | 55.0% | |
| CAGCATTCTCATTGACGGGG+TGG | + | chr3.2:84045723-84045742 | None:intergenic | 55.0% | |
| CAGTTGTACCCCTGCACCTA+AGG | + | chr3.2:84044270-84044289 | None:intergenic | 55.0% | |
| CGGCTGAGTGACTAGGTGTT+TGG | - | chr3.2:84044718-84044737 | MS.gene78701:intron | 55.0% | |
| GAAGCGAACATGTGTGCGGA+TGG | + | chr3.2:84045210-84045229 | None:intergenic | 55.0% | |
| GCAATTCGTCAGGGATCGGA+GGG | - | chr3.2:84043818-84043837 | MS.gene78701:intron | 55.0% | |
| GGAAGACTATGGTGAGGGTG+TGG | + | chr3.2:84046334-84046353 | None:intergenic | 55.0% | |
| GTCCACCTCCGCTATGACTT+AGG | - | chr3.2:84044966-84044985 | MS.gene78701:intron | 55.0% | |
| GTTCCTACGGCTGAGTGACT+AGG | - | chr3.2:84044711-84044730 | MS.gene78701:intron | 55.0% | |
| TCGGGAAGCGAACATGTGTG+CGG | + | chr3.2:84045214-84045233 | None:intergenic | 55.0% | |
| TCTACCCAACCCGTCAAAGG+AGG | - | chr3.2:84045459-84045478 | MS.gene78701:intron | 55.0% | |
| TCTCCAAAGCTCGCCTATGC+TGG | - | chr3.2:84045419-84045438 | MS.gene78701:intron | 55.0% | |
| TGCAATTCGTCAGGGATCGG+AGG | - | chr3.2:84043817-84043836 | MS.gene78701:intron | 55.0% | |
| TGCCTCCACACCAGGAGTTA+GGG | + | chr3.2:84046085-84046104 | None:intergenic | 55.0% | |
| ! | GCAGGATTGGTGGATGCAAG+TGG | + | chr3.2:84046173-84046192 | None:intergenic | 55.0% |
| ! | GGAAACCTCCTTTGACGGGT+TGG | + | chr3.2:84045467-84045486 | None:intergenic | 55.0% |
| CTCCTGGTGTGGAGGCAGAA+TGG | - | chr3.2:84046088-84046107 | MS.gene78701:intron | 60.0% | |
| CTGCCTCCACACCAGGAGTT+AGG | + | chr3.2:84046086-84046105 | None:intergenic | 60.0% | |
| GAGCCAGCATAGGCGAGCTT+TGG | + | chr3.2:84045425-84045444 | None:intergenic | 60.0% | |
| GCCTCCACACCAGGAGTTAG+GGG | + | chr3.2:84046084-84046103 | None:intergenic | 60.0% | |
| TCAGCCCCTAACTCCTGGTG+TGG | - | chr3.2:84046077-84046096 | MS.gene78701:intron | 60.0% | |
| GCCCCTAACTCCTGGTGTGG+AGG | - | chr3.2:84046080-84046099 | MS.gene78701:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 84043378 | 84047068 | 84043378 | ID=MS.gene78701 |
| chr3.2 | mRNA | 84043378 | 84047068 | 84043378 | ID=MS.gene78701.t1;Parent=MS.gene78701 |
| chr3.2 | exon | 84046954 | 84047068 | 84046954 | ID=MS.gene78701.t1.exon1;Parent=MS.gene78701.t1 |
| chr3.2 | CDS | 84046954 | 84047068 | 84046954 | ID=cds.MS.gene78701.t1;Parent=MS.gene78701.t1 |
| chr3.2 | exon | 84045834 | 84045874 | 84045834 | ID=MS.gene78701.t1.exon2;Parent=MS.gene78701.t1 |
| chr3.2 | CDS | 84045834 | 84045874 | 84045834 | ID=cds.MS.gene78701.t1;Parent=MS.gene78701.t1 |
| chr3.2 | exon | 84043698 | 84043757 | 84043698 | ID=MS.gene78701.t1.exon3;Parent=MS.gene78701.t1 |
| chr3.2 | CDS | 84043698 | 84043757 | 84043698 | ID=cds.MS.gene78701.t1;Parent=MS.gene78701.t1 |
| chr3.2 | exon | 84043544 | 84043600 | 84043544 | ID=MS.gene78701.t1.exon4;Parent=MS.gene78701.t1 |
| chr3.2 | CDS | 84043544 | 84043600 | 84043544 | ID=cds.MS.gene78701.t1;Parent=MS.gene78701.t1 |
| chr3.2 | exon | 84043378 | 84043452 | 84043378 | ID=MS.gene78701.t1.exon5;Parent=MS.gene78701.t1 |
| chr3.2 | CDS | 84043378 | 84043452 | 84043378 | ID=cds.MS.gene78701.t1;Parent=MS.gene78701.t1 |
| Gene Sequence |
| Protein sequence |
