Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79284.t1 | XP_013468489.1 | 90.4 | 457 | 13 | 1 | 1 | 426 | 1 | 457 | 2.60E-227 | 797.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79284.t1 | Q94C59 | 41.9 | 334 | 153 | 6 | 128 | 426 | 201 | 528 | 1.8e-67 | 258.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79284.t1 | A0A072VLM7 | 90.4 | 457 | 13 | 1 | 1 | 426 | 1 | 457 | 1.9e-227 | 797.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053318 | MS.gene79284 | 0.802897 | 4.51E-49 | -1.69E-46 |
| MS.gene053626 | MS.gene79284 | 0.829678 | 4.50E-55 | -1.69E-46 |
| MS.gene054003 | MS.gene79284 | 0.828487 | 8.75E-55 | -1.69E-46 |
| MS.gene055486 | MS.gene79284 | 0.827002 | 1.99E-54 | -1.69E-46 |
| MS.gene055519 | MS.gene79284 | 0.811043 | 8.53E-51 | -1.69E-46 |
| MS.gene05601 | MS.gene79284 | 0.808739 | 2.67E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene79284 | 0.859231 | 4.77E-63 | -1.69E-46 |
| MS.gene05995 | MS.gene79284 | 0.81199 | 5.31E-51 | -1.69E-46 |
| MS.gene05996 | MS.gene79284 | 0.817885 | 2.61E-52 | -1.69E-46 |
| MS.gene060295 | MS.gene79284 | 0.812324 | 4.49E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene79284 | -0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene79284 | 0.800948 | 1.13E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79284.t1 | MTR_1g069915 | 90.591 | 457 | 12 | 1 | 1 | 426 | 1 | 457 | 0.0 | 831 |
| MS.gene79284.t1 | MTR_2g031610 | 40.609 | 394 | 176 | 6 | 91 | 426 | 64 | 457 | 4.05e-98 | 302 |
| MS.gene79284.t1 | MTR_8g095360 | 41.108 | 343 | 157 | 7 | 120 | 426 | 158 | 491 | 3.94e-81 | 259 |
| MS.gene79284.t1 | MTR_4g033435 | 36.828 | 372 | 180 | 11 | 101 | 426 | 222 | 584 | 3.67e-74 | 243 |
| MS.gene79284.t1 | MTR_3g097350 | 37.243 | 341 | 170 | 8 | 118 | 420 | 221 | 555 | 9.16e-70 | 231 |
| MS.gene79284.t1 | MTR_4g013300 | 34.431 | 334 | 180 | 7 | 129 | 426 | 107 | 437 | 5.66e-65 | 215 |
| MS.gene79284.t1 | MTR_7g070480 | 34.402 | 343 | 189 | 7 | 118 | 426 | 71 | 411 | 2.41e-61 | 206 |
| MS.gene79284.t1 | MTR_4g033435 | 36.777 | 242 | 121 | 9 | 101 | 319 | 222 | 454 | 4.92e-39 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79284.t1 | AT1G30690 | 41.916 | 334 | 153 | 6 | 128 | 426 | 201 | 528 | 5.37e-83 | 265 |
| MS.gene79284.t1 | AT1G30690 | 41.916 | 334 | 153 | 6 | 128 | 426 | 201 | 528 | 5.37e-83 | 265 |
| MS.gene79284.t1 | AT4G09160 | 41.298 | 339 | 148 | 7 | 131 | 426 | 301 | 631 | 7.42e-76 | 249 |
| MS.gene79284.t1 | AT4G09160 | 41.298 | 339 | 148 | 7 | 131 | 426 | 326 | 656 | 7.44e-76 | 249 |
| MS.gene79284.t1 | AT4G09160 | 41.298 | 339 | 148 | 7 | 131 | 426 | 301 | 631 | 9.05e-76 | 249 |
| MS.gene79284.t1 | AT1G72160 | 36.000 | 375 | 184 | 7 | 91 | 426 | 124 | 481 | 4.66e-69 | 227 |
| MS.gene79284.t1 | AT3G51670 | 36.446 | 332 | 169 | 7 | 132 | 426 | 69 | 395 | 8.16e-64 | 211 |
| MS.gene79284.t1 | AT1G22530 | 32.378 | 349 | 184 | 10 | 120 | 426 | 303 | 641 | 3.54e-54 | 191 |
| MS.gene79284.t1 | AT1G22530 | 32.378 | 349 | 184 | 10 | 120 | 426 | 337 | 675 | 6.04e-54 | 191 |
| MS.gene79284.t1 | AT1G72150 | 31.045 | 335 | 181 | 9 | 131 | 426 | 243 | 566 | 1.28e-47 | 172 |
Find 83 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTGAGGAAATTCTTAA+AGG | 0.227165 | 1.4:+56889113 | MS.gene79284:CDS |
| AAAATTCAAGAAGCAATTAT+TGG | 0.227229 | 1.4:+56888967 | MS.gene79284:CDS |
| TTGTTAGGTGAAGGAGAAAA+AGG | 0.245387 | 1.4:+56888997 | MS.gene79284:CDS |
| ATCTTAGAGATATTACATTA+TGG | 0.248604 | 1.4:+56889046 | MS.gene79284:CDS |
| TAAAATTCTTGATGAAGATT+TGG | 0.250588 | 1.4:+56889212 | MS.gene79284:CDS |
| TGGTGTTGATGGAATTATTC+AGG | 0.274026 | 1.4:+56889431 | MS.gene79284:CDS |
| ATAGTAATAACAGTTGAAAA+TGG | 0.282119 | 1.4:+56890679 | MS.gene79284:CDS |
| AGCTCTTTCATTCCTTGAAT+TGG | 0.286220 | 1.4:-56889474 | None:intergenic |
| TTCTGGCAAATTCTCGTTGC+CGG | 0.319245 | 1.4:+56888681 | MS.gene79284:CDS |
| ATTATTGGAAAATATTTGTT+AGG | 0.321956 | 1.4:+56888982 | MS.gene79284:CDS |
| AAAATTCTTGATGAAGATTT+GGG | 0.329182 | 1.4:+56889213 | MS.gene79284:CDS |
| GCTCAACTCCGTCAGCAAAA+AGG | 0.352272 | 1.4:+56889494 | MS.gene79284:CDS |
| AACACTCACCTGAGAAGAAT+TGG | 0.366039 | 1.4:-56889785 | None:intergenic |
| TTGTATGAACATTCATCATT+TGG | 0.366571 | 1.4:-56890583 | None:intergenic |
| ACGAGAATTTGCCAGAAAAC+TGG | 0.369041 | 1.4:-56888675 | None:intergenic |
| TCTTAGAGATATTACATTAT+GGG | 0.371202 | 1.4:+56889047 | MS.gene79284:CDS |
| TGTGCCCTACTTGGTAATAA+AGG | 0.371867 | 1.4:-56889075 | None:intergenic |
| GAGATGGAGGATTCAATTGA+TGG | 0.376525 | 1.4:+56889377 | MS.gene79284:CDS |
| AATTTGTACAAGAAGACATT+TGG | 0.376644 | 1.4:+56889327 | MS.gene79284:CDS |
| GAGCATCTTCCAGCTGGATA+TGG | 0.380972 | 1.4:+56889899 | MS.gene79284:CDS |
| AATTTCATGTTGGTAGCTTC+TGG | 0.400803 | 1.4:-56890835 | None:intergenic |
| AGCCTAATCTCTGCAGGACT+TGG | 0.407088 | 1.4:-56888910 | None:intergenic |
| CAGCTGGATATGGTGGTCTA+AGG | 0.408968 | 1.4:+56889909 | MS.gene79284:CDS |
| TATCCAGCTGGAAGATGCTC+TGG | 0.411235 | 1.4:-56889896 | None:intergenic |
| CTACAAAACCAAAGTGTTGT+TGG | 0.411528 | 1.4:+56890613 | MS.gene79284:CDS |
| AGCTACCAACATGAAATTGA+TGG | 0.418460 | 1.4:+56890840 | MS.gene79284:CDS |
| TTGAAAAGTGCACCAATTCA+AGG | 0.425968 | 1.4:+56889462 | MS.gene79284:CDS |
| CAAGAGAAAGAAATCATTGT+TGG | 0.439581 | 1.4:+56888933 | MS.gene79284:CDS |
| TAGTAATAACAGTTGAAAAT+GGG | 0.440697 | 1.4:+56890680 | MS.gene79284:CDS |
| TGTTACAGAAGACATTGGTT+TGG | 0.442089 | 1.4:+56889169 | MS.gene79284:CDS |
| TCGTAAACATAGTAACAAAC+TGG | 0.444948 | 1.4:-56889288 | None:intergenic |
| TGCTCTAAAACTTTATCATC+AGG | 0.448465 | 1.4:-56889956 | None:intergenic |
| CTCTTGAGCCTAATCTCTGC+AGG | 0.448756 | 1.4:-56888916 | None:intergenic |
| GGAAAATATTTGTTAGGTGA+AGG | 0.449552 | 1.4:+56888988 | MS.gene79284:CDS |
| CGTTGCCGGAAAATCCGATC+AGG | 0.466677 | 1.4:+56888695 | MS.gene79284:CDS |
| AGAATTGGTGTGACCCTTTG+TGG | 0.480253 | 1.4:-56889770 | None:intergenic |
| GGCCCAGAGCATCTTCCAGC+TGG | 0.482220 | 1.4:+56889893 | MS.gene79284:CDS |
| TAGTGATGTGGAACGAGAAT+TGG | 0.486000 | 1.4:+56888864 | MS.gene79284:CDS |
| CTCATGGCCTCTTCCCTGAT+CGG | 0.487905 | 1.4:-56888709 | None:intergenic |
| GTACCTTCATGTGCCCTACT+TGG | 0.493972 | 1.4:-56889084 | None:intergenic |
| ATATTTGGATAGTAGAGATA+AGG | 0.496144 | 1.4:+56889257 | MS.gene79284:CDS |
| ACTGTTATTACTATCTTCCC+TGG | 0.497920 | 1.4:-56890670 | None:intergenic |
| TTGTTGAGCACCTCATTGAC+TGG | 0.499653 | 1.4:-56890016 | None:intergenic |
| GTGTTCCTTTATTACCAAGT+AGG | 0.502140 | 1.4:+56889070 | MS.gene79284:CDS |
| TGACCCTTTGTGGTCTTGCA+AGG | 0.502712 | 1.4:-56889760 | None:intergenic |
| TGCTGTCACCAACAACACTT+TGG | 0.503098 | 1.4:-56890621 | None:intergenic |
| TGTTCCTTTATTACCAAGTA+GGG | 0.503280 | 1.4:+56889071 | MS.gene79284:CDS |
| GGGTCACACCAATTCTTCTC+AGG | 0.506747 | 1.4:+56889777 | MS.gene79284:CDS |
| CACCAAGTCCTGCAGAGATT+AGG | 0.512586 | 1.4:+56888908 | MS.gene79284:CDS |
| CATCCTTGCAAGACCACAAA+GGG | 0.520308 | 1.4:+56889757 | MS.gene79284:CDS |
| ATGAAATGTCACAGGTACAT+AGG | 0.530202 | 1.4:+56889872 | MS.gene79284:intron |
| TTGGTTGATGATGATGAGGT+AGG | 0.531055 | 1.4:+56888883 | MS.gene79284:CDS |
| ATGTGGGACATAACTGTTGT+TGG | 0.536809 | 1.4:+56890529 | MS.gene79284:CDS |
| GGAAAATCCGATCAGGGAAG+AGG | 0.541733 | 1.4:+56888702 | MS.gene79284:CDS |
| CTTAGAGATATTACATTATG+GGG | 0.542377 | 1.4:+56889048 | MS.gene79284:CDS |
| ATGTTCATCATTGCATTCAT+CGG | 0.544558 | 1.4:-56888737 | None:intergenic |
| GGACATAACTGTTGTTGGAT+GGG | 0.553153 | 1.4:+56890534 | MS.gene79284:CDS |
| GCATTCATCGGTATCACTCA+TGG | 0.553380 | 1.4:-56888725 | None:intergenic |
| TGGTTGATGATGATGAGGTA+GGG | 0.556544 | 1.4:+56888884 | MS.gene79284:CDS |
| CTTAGACCACCATATCCAGC+TGG | 0.567452 | 1.4:-56889908 | None:intergenic |
| CATCTTCCAGCTGGATATGG+TGG | 0.574311 | 1.4:+56889902 | MS.gene79284:CDS |
| ATCCAGCTGGAAGATGCTCT+GGG | 0.577545 | 1.4:-56889895 | None:intergenic |
| TTCTGCCATCAATTTCATGT+TGG | 0.581698 | 1.4:-56890845 | None:intergenic |
| TGACATGTTACAGAAGACAT+TGG | 0.594854 | 1.4:+56889164 | MS.gene79284:CDS |
| CTGGATATGGTGGTCTAAGG+AGG | 0.598272 | 1.4:+56889912 | MS.gene79284:CDS |
| TGGATGGGAGGTGATTTACA+AGG | 0.598715 | 1.4:+56890549 | MS.gene79284:CDS |
| TTTGCCAGAAAACTGGAGCA+TGG | 0.611039 | 1.4:-56888668 | None:intergenic |
| AGACTGGAGTGACAATAATG+TGG | 0.612074 | 1.4:+56890512 | MS.gene79284:intron |
| CATAACTGTTGTTGGATGGG+AGG | 0.613416 | 1.4:+56890537 | MS.gene79284:CDS |
| GACTGGAGTGACAATAATGT+GGG | 0.615833 | 1.4:+56890513 | MS.gene79284:intron |
| GGGACATAACTGTTGTTGGA+TGG | 0.617419 | 1.4:+56890533 | MS.gene79284:CDS |
| AGTTGAATTTCCAGTCAATG+AGG | 0.619748 | 1.4:+56890006 | MS.gene79284:CDS |
| TTGGATAGTAGAGATAAGGA+AGG | 0.628322 | 1.4:+56889261 | MS.gene79284:CDS |
| TTACCAAGTAGGGCACATGA+AGG | 0.629064 | 1.4:+56889081 | MS.gene79284:CDS |
| TCATGATCTTGTTAGTGATG+TGG | 0.637441 | 1.4:+56888852 | MS.gene79284:CDS |
| TCAAATAAGACTTATCAATG+AGG | 0.649999 | 1.4:+56888801 | MS.gene79284:CDS |
| AAGGTACTGATATTGTATTG+AGG | 0.652952 | 1.4:+56889100 | MS.gene79284:CDS |
| GTTGCCGGAAAATCCGATCA+GGG | 0.653037 | 1.4:+56888696 | MS.gene79284:CDS |
| TCATCCTTGCAAGACCACAA+AGG | 0.655234 | 1.4:+56889756 | MS.gene79284:CDS |
| AGAATTGGTTGATGATGATG+AGG | 0.676048 | 1.4:+56888879 | MS.gene79284:CDS |
| GATGAATGCAATGATGAACA+TGG | 0.677939 | 1.4:+56888739 | MS.gene79284:CDS |
| ATGAATGCAATGATGAACAT+GGG | 0.696221 | 1.4:+56888740 | MS.gene79284:CDS |
| AGTTTGTTACTATGTTTACG+AGG | 0.698977 | 1.4:+56889290 | MS.gene79284:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAATAAATTAGAACAA+AGG | - | chr1.4:56890483-56890502 | None:intergenic | 15.0% |
| !! | AATAGAGTAAATATCTAAAT+TGG | - | chr1.4:56890440-56890459 | None:intergenic | 15.0% |
| !! | ATTATTGGAAAATATTTGTT+AGG | + | chr1.4:56888982-56889001 | MS.gene79284:CDS | 15.0% |
| !! | AAAATTCAAGAAGCAATTAT+TGG | + | chr1.4:56888967-56888986 | MS.gene79284:CDS | 20.0% |
| !! | AAAATTCTTGATGAAGATTT+GGG | + | chr1.4:56889213-56889232 | MS.gene79284:CDS | 20.0% |
| !! | ATAGTAATAACAGTTGAAAA+TGG | + | chr1.4:56890679-56890698 | MS.gene79284:CDS | 20.0% |
| !! | ATCATTGATATTATTCACTT+AGG | + | chr1.4:56890251-56890270 | MS.gene79284:intron | 20.0% |
| !! | ATCTTAGAGATATTACATTA+TGG | + | chr1.4:56889046-56889065 | MS.gene79284:CDS | 20.0% |
| !! | TAAAATTCTTGATGAAGATT+TGG | + | chr1.4:56889212-56889231 | MS.gene79284:CDS | 20.0% |
| !! | TAGTAATAACAGTTGAAAAT+GGG | + | chr1.4:56890680-56890699 | MS.gene79284:CDS | 20.0% |
| !! | TCTTAGAGATATTACATTAT+GGG | + | chr1.4:56889047-56889066 | MS.gene79284:CDS | 20.0% |
| !!! | AAATTGGTCTTTGAAATTAT+AGG | - | chr1.4:56890424-56890443 | None:intergenic | 20.0% |
| !!! | ACATTTTTATAAACTATCTC+CGG | - | chr1.4:56889546-56889565 | None:intergenic | 20.0% |
| !!! | GATTTTCATTGAAATCTAAA+TGG | - | chr1.4:56888783-56888802 | None:intergenic | 20.0% |
| !!! | TATATTTTTTTGCATTCAGT+AGG | + | chr1.4:56890812-56890831 | MS.gene79284:intron | 20.0% |
| !!! | TTTTGAAAAAGTTGGATATT+TGG | + | chr1.4:56889242-56889261 | MS.gene79284:CDS | 20.0% |
| !!! | TTTTGTGTAAATATCAAATC+CGG | + | chr1.4:56890107-56890126 | MS.gene79284:intron | 20.0% |
| ! | AATTTGTACAAGAAGACATT+TGG | + | chr1.4:56889327-56889346 | MS.gene79284:CDS | 25.0% |
| ! | AGAAAAAATTTCATTGCCAA+AGG | + | chr1.4:56889020-56889039 | MS.gene79284:CDS | 25.0% |
| ! | ATATTTGGATAGTAGAGATA+AGG | + | chr1.4:56889257-56889276 | MS.gene79284:CDS | 25.0% |
| ! | CTTAGAGATATTACATTATG+GGG | + | chr1.4:56889048-56889067 | MS.gene79284:CDS | 25.0% |
| ! | TACAATATCTTCAAATGAAG+TGG | - | chr1.4:56890794-56890813 | None:intergenic | 25.0% |
| ! | TATGATAGCAAAATGAACAT+TGG | - | chr1.4:56890757-56890776 | None:intergenic | 25.0% |
| ! | TCAAATAAGACTTATCAATG+AGG | + | chr1.4:56888801-56888820 | MS.gene79284:CDS | 25.0% |
| ! | TGTATTGAGGAAATTCTTAA+AGG | + | chr1.4:56889113-56889132 | MS.gene79284:CDS | 25.0% |
| ! | TTAACATTATGAAATGTCAC+AGG | + | chr1.4:56889864-56889883 | MS.gene79284:intron | 25.0% |
| ! | TTGTATGAACATTCATCATT+TGG | - | chr1.4:56890586-56890605 | None:intergenic | 25.0% |
| !! | CATTTTTATAAACTATCTCC+GGG | - | chr1.4:56889545-56889564 | None:intergenic | 25.0% |
| !! | CTTTTTACATAAATGAACCA+GGG | + | chr1.4:56890653-56890672 | MS.gene79284:CDS | 25.0% |
| !! | TCTTTTTACATAAATGAACC+AGG | + | chr1.4:56890652-56890671 | MS.gene79284:CDS | 25.0% |
| !! | TTGGATTATTGATAACATGA+GGG | - | chr1.4:56890165-56890184 | None:intergenic | 25.0% |
| !! | TTTGGATTATTGATAACATG+AGG | - | chr1.4:56890166-56890185 | None:intergenic | 25.0% |
| !!! | ATATCTCTAAGATTTTCCTT+TGG | - | chr1.4:56889039-56889058 | None:intergenic | 25.0% |
| !!! | ATTAAGAAGTTGAGTTTTAG+AGG | + | chr1.4:56889408-56889427 | MS.gene79284:CDS | 25.0% |
| ACTCTATTTATGAACCATGT+TGG | + | chr1.4:56890452-56890471 | MS.gene79284:intron | 30.0% | |
| ATGAATGCAATGATGAACAT+GGG | + | chr1.4:56888740-56888759 | MS.gene79284:CDS | 30.0% | |
| ATGTTCATCATTGCATTCAT+CGG | - | chr1.4:56888740-56888759 | None:intergenic | 30.0% | |
| CAAGAGAAAGAAATCATTGT+TGG | + | chr1.4:56888933-56888952 | MS.gene79284:CDS | 30.0% | |
| CAATAATCCAAAATGACTCA+TGG | + | chr1.4:56890174-56890193 | MS.gene79284:intron | 30.0% | |
| GATACAACCCTAAAATTTCA+AGG | - | chr1.4:56890134-56890153 | None:intergenic | 30.0% | |
| TATCATCAGGAGAAAAATCT+TGG | - | chr1.4:56889946-56889965 | None:intergenic | 30.0% | |
| TCGTAAACATAGTAACAAAC+TGG | - | chr1.4:56889291-56889310 | None:intergenic | 30.0% | |
| TGTAACAATCTAATCTCTCA+CGG | - | chr1.4:56890399-56890418 | None:intergenic | 30.0% | |
| TGTTCCTTTATTACCAAGTA+GGG | + | chr1.4:56889071-56889090 | MS.gene79284:CDS | 30.0% | |
| ! | GGAAAATATTTGTTAGGTGA+AGG | + | chr1.4:56888988-56889007 | MS.gene79284:CDS | 30.0% |
| ! | TGGATTATTGATAACATGAG+GGG | - | chr1.4:56890164-56890183 | None:intergenic | 30.0% |
| ! | TTGTAGTAAATGCACCATTT+TGG | + | chr1.4:56889675-56889694 | MS.gene79284:intron | 30.0% |
| !! | AAGGTACTGATATTGTATTG+AGG | + | chr1.4:56889100-56889119 | MS.gene79284:CDS | 30.0% |
| !! | AGTTTGTTACTATGTTTACG+AGG | + | chr1.4:56889290-56889309 | MS.gene79284:CDS | 30.0% |
| !! | GGTTCTGATTTTGAAAAAGT+TGG | + | chr1.4:56889234-56889253 | MS.gene79284:CDS | 30.0% |
| !! | TGAACTTCTTTTTGTTTCTC+TGG | - | chr1.4:56889739-56889758 | None:intergenic | 30.0% |
| !! | TGCTCTAAAACTTTATCATC+AGG | - | chr1.4:56889959-56889978 | None:intergenic | 30.0% |
| !!! | AATGTGACTTGTTTTTGAGA+TGG | + | chr1.4:56889361-56889380 | MS.gene79284:CDS | 30.0% |
| AACCCTAAAATTTCAAGGAC+CGG | - | chr1.4:56890129-56890148 | None:intergenic | 35.0% | |
| ACTGTTATTACTATCTTCCC+TGG | - | chr1.4:56890673-56890692 | None:intergenic | 35.0% | |
| AGCTACCAACATGAAATTGA+TGG | + | chr1.4:56890840-56890859 | MS.gene79284:CDS | 35.0% | |
| AGCTCTTTCATTCCTTGAAT+TGG | - | chr1.4:56889477-56889496 | None:intergenic | 35.0% | |
| AGTTGAATTTCCAGTCAATG+AGG | + | chr1.4:56890006-56890025 | MS.gene79284:CDS | 35.0% | |
| ATGAAATGTCACAGGTACAT+AGG | + | chr1.4:56889872-56889891 | MS.gene79284:intron | 35.0% | |
| CCTCTATCTGAATCTGTTAT+CGG | + | chr1.4:56890224-56890243 | MS.gene79284:intron | 35.0% | |
| CGATAACAGATTCAGATAGA+GGG | - | chr1.4:56890226-56890245 | None:intergenic | 35.0% | |
| CTAGTCCCTACATATATCAA+TGG | + | chr1.4:56890319-56890338 | MS.gene79284:intron | 35.0% | |
| GATGAATGCAATGATGAACA+TGG | + | chr1.4:56888739-56888758 | MS.gene79284:CDS | 35.0% | |
| GTGTTCCTTTATTACCAAGT+AGG | + | chr1.4:56889070-56889089 | MS.gene79284:CDS | 35.0% | |
| TCATGATCTTGTTAGTGATG+TGG | + | chr1.4:56888852-56888871 | MS.gene79284:CDS | 35.0% | |
| TCCCTACATATATCAATGGA+GGG | + | chr1.4:56890323-56890342 | MS.gene79284:intron | 35.0% | |
| TCCCTCCATTGATATATGTA+GGG | - | chr1.4:56890327-56890346 | None:intergenic | 35.0% | |
| TGACATGTTACAGAAGACAT+TGG | + | chr1.4:56889164-56889183 | MS.gene79284:CDS | 35.0% | |
| TTCCCTCCATTGATATATGT+AGG | - | chr1.4:56890328-56890347 | None:intergenic | 35.0% | |
| TTCTGCCATCAATTTCATGT+TGG | - | chr1.4:56890848-56890867 | None:intergenic | 35.0% | |
| TTGGATAGTAGAGATAAGGA+AGG | + | chr1.4:56889261-56889280 | MS.gene79284:CDS | 35.0% | |
| TTGTTAGGTGAAGGAGAAAA+AGG | + | chr1.4:56888997-56889016 | MS.gene79284:CDS | 35.0% | |
| TTTCTTTGATGTGTCTAGAC+TGG | + | chr1.4:56890496-56890515 | MS.gene79284:intron | 35.0% | |
| ! | AATCCGGTCCTTGAAATTTT+AGG | + | chr1.4:56890123-56890142 | MS.gene79284:intron | 35.0% |
| ! | ATCCGGTCCTTGAAATTTTA+GGG | + | chr1.4:56890124-56890143 | MS.gene79284:intron | 35.0% |
| ! | CTTCACAAGTGTTATTCTCA+AGG | + | chr1.4:56889705-56889724 | MS.gene79284:intron | 35.0% |
| ! | GTTGTTTCAAAGCTATTACC+CGG | + | chr1.4:56889524-56889543 | MS.gene79284:intron | 35.0% |
| ! | TGCAATTCCATGAGTCATTT+TGG | - | chr1.4:56890184-56890203 | None:intergenic | 35.0% |
| ! | TGCAATTTCAGAGACCATTT+TGG | + | chr1.4:56890363-56890382 | MS.gene79284:intron | 35.0% |
| ! | TGTTACAGAAGACATTGGTT+TGG | + | chr1.4:56889169-56889188 | MS.gene79284:CDS | 35.0% |
| ! | TTGAAAAGTGCACCAATTCA+AGG | + | chr1.4:56889462-56889481 | MS.gene79284:CDS | 35.0% |
| !! | AATTTCATGTTGGTAGCTTC+TGG | - | chr1.4:56890838-56890857 | None:intergenic | 35.0% |
| !! | ACGGTATCGATATTCCAAAA+TGG | - | chr1.4:56890380-56890399 | None:intergenic | 35.0% |
| !! | AGAATTGGTTGATGATGATG+AGG | + | chr1.4:56888879-56888898 | MS.gene79284:CDS | 35.0% |
| !! | CTACAAAACCAAAGTGTTGT+TGG | + | chr1.4:56890613-56890632 | MS.gene79284:CDS | 35.0% |
| !! | TGGTGTTGATGGAATTATTC+AGG | + | chr1.4:56889431-56889450 | MS.gene79284:CDS | 35.0% |
| !!! | AAGAAGTTGAGTTTTAGAGG+TGG | + | chr1.4:56889411-56889430 | MS.gene79284:CDS | 35.0% |
| AACACTCACCTGAGAAGAAT+TGG | - | chr1.4:56889788-56889807 | None:intergenic | 40.0% | |
| ACGAGAATTTGCCAGAAAAC+TGG | - | chr1.4:56888678-56888697 | None:intergenic | 40.0% | |
| AGACTGGAGTGACAATAATG+TGG | + | chr1.4:56890512-56890531 | MS.gene79284:intron | 40.0% | |
| ATGTGGGACATAACTGTTGT+TGG | + | chr1.4:56890529-56890548 | MS.gene79284:CDS | 40.0% | |
| CCGATAACAGATTCAGATAG+AGG | - | chr1.4:56890227-56890246 | None:intergenic | 40.0% | |
| GAACAAAGGAAAGTCCAACA+TGG | - | chr1.4:56890469-56890488 | None:intergenic | 40.0% | |
| GACTGGAGTGACAATAATGT+GGG | + | chr1.4:56890513-56890532 | MS.gene79284:intron | 40.0% | |
| GAGATGGAGGATTCAATTGA+TGG | + | chr1.4:56889377-56889396 | MS.gene79284:CDS | 40.0% | |
| GGACATAACTGTTGTTGGAT+GGG | + | chr1.4:56890534-56890553 | MS.gene79284:CDS | 40.0% | |
| GTCCCTACATATATCAATGG+AGG | + | chr1.4:56890322-56890341 | MS.gene79284:intron | 40.0% | |
| TAGTGATGTGGAACGAGAAT+TGG | + | chr1.4:56888864-56888883 | MS.gene79284:CDS | 40.0% | |
| TGTGAAGTGTAGAGCCAAAA+TGG | - | chr1.4:56889692-56889711 | None:intergenic | 40.0% | |
| ! | AGTCTAGAGTGGCATTAAGT+TGG | - | chr1.4:56890299-56890318 | None:intergenic | 40.0% |
| ! | CATAAGAGCCTTTTTGCTGA+CGG | - | chr1.4:56889505-56889524 | None:intergenic | 40.0% |
| ! | TGTGCCCTACTTGGTAATAA+AGG | - | chr1.4:56889078-56889097 | None:intergenic | 40.0% |
| !! | TGGTTGATGATGATGAGGTA+GGG | + | chr1.4:56888884-56888903 | MS.gene79284:CDS | 40.0% |
| !! | TTGGTTGATGATGATGAGGT+AGG | + | chr1.4:56888883-56888902 | MS.gene79284:CDS | 40.0% |
| !!! | AGTTTTAGAGGTGGTGTTGA+TGG | + | chr1.4:56889420-56889439 | MS.gene79284:CDS | 40.0% |
| !!! | GTGACTTGTTTTTGAGATGG+AGG | + | chr1.4:56889364-56889383 | MS.gene79284:CDS | 40.0% |
| AGAATTGGTGTGACCCTTTG+TGG | - | chr1.4:56889773-56889792 | None:intergenic | 45.0% | |
| CATAACTGTTGTTGGATGGG+AGG | + | chr1.4:56890537-56890556 | MS.gene79284:CDS | 45.0% | |
| CATCCTTGCAAGACCACAAA+GGG | + | chr1.4:56889757-56889776 | MS.gene79284:CDS | 45.0% | |
| GCATTCATCGGTATCACTCA+TGG | - | chr1.4:56888728-56888747 | None:intergenic | 45.0% | |
| GGGACATAACTGTTGTTGGA+TGG | + | chr1.4:56890533-56890552 | MS.gene79284:CDS | 45.0% | |
| TCATCCTTGCAAGACCACAA+AGG | + | chr1.4:56889756-56889775 | MS.gene79284:CDS | 45.0% | |
| TGCTGTCACCAACAACACTT+TGG | - | chr1.4:56890624-56890643 | None:intergenic | 45.0% | |
| TGGATGGGAGGTGATTTACA+AGG | + | chr1.4:56890549-56890568 | MS.gene79284:CDS | 45.0% | |
| TTACCAAGTAGGGCACATGA+AGG | + | chr1.4:56889081-56889100 | MS.gene79284:CDS | 45.0% | |
| TTCTGGCAAATTCTCGTTGC+CGG | + | chr1.4:56888681-56888700 | MS.gene79284:CDS | 45.0% | |
| TTGTTGAGCACCTCATTGAC+TGG | - | chr1.4:56890019-56890038 | None:intergenic | 45.0% | |
| ! | TCTTCCCTGATCGGATTTTC+CGG | - | chr1.4:56888703-56888722 | None:intergenic | 45.0% |
| AGCCTAATCTCTGCAGGACT+TGG | - | chr1.4:56888913-56888932 | None:intergenic | 50.0% | |
| ATCCAGCTGGAAGATGCTCT+GGG | - | chr1.4:56889898-56889917 | None:intergenic | 50.0% | |
| CACCAAGTCCTGCAGAGATT+AGG | + | chr1.4:56888908-56888927 | MS.gene79284:CDS | 50.0% | |
| CAGCTGGATATGGTGGTCTA+AGG | + | chr1.4:56889909-56889928 | MS.gene79284:CDS | 50.0% | |
| CATCTTCCAGCTGGATATGG+TGG | + | chr1.4:56889902-56889921 | MS.gene79284:CDS | 50.0% | |
| CTCTTGAGCCTAATCTCTGC+AGG | - | chr1.4:56888919-56888938 | None:intergenic | 50.0% | |
| CTGGATATGGTGGTCTAAGG+AGG | + | chr1.4:56889912-56889931 | MS.gene79284:CDS | 50.0% | |
| CTTAGACCACCATATCCAGC+TGG | - | chr1.4:56889911-56889930 | None:intergenic | 50.0% | |
| GAGCATCTTCCAGCTGGATA+TGG | + | chr1.4:56889899-56889918 | MS.gene79284:CDS | 50.0% | |
| GCTCAACTCCGTCAGCAAAA+AGG | + | chr1.4:56889494-56889513 | MS.gene79284:CDS | 50.0% | |
| GGAAAATCCGATCAGGGAAG+AGG | + | chr1.4:56888702-56888721 | MS.gene79284:CDS | 50.0% | |
| GGGTCACACCAATTCTTCTC+AGG | + | chr1.4:56889777-56889796 | MS.gene79284:CDS | 50.0% | |
| GTACCTTCATGTGCCCTACT+TGG | - | chr1.4:56889087-56889106 | None:intergenic | 50.0% | |
| GTAGGGACTAGAGTCTAGAG+TGG | - | chr1.4:56890310-56890329 | None:intergenic | 50.0% | |
| GTTGCCGGAAAATCCGATCA+GGG | + | chr1.4:56888696-56888715 | MS.gene79284:CDS | 50.0% | |
| TATCCAGCTGGAAGATGCTC+TGG | - | chr1.4:56889899-56889918 | None:intergenic | 50.0% | |
| ! | TGACCCTTTGTGGTCTTGCA+AGG | - | chr1.4:56889763-56889782 | None:intergenic | 50.0% |
| CGTTGCCGGAAAATCCGATC+AGG | + | chr1.4:56888695-56888714 | MS.gene79284:CDS | 55.0% | |
| CTCATGGCCTCTTCCCTGAT+CGG | - | chr1.4:56888712-56888731 | None:intergenic | 55.0% | |
| ! | GGCCCAGAGCATCTTCCAGC+TGG | + | chr1.4:56889893-56889912 | MS.gene79284:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 56888670 | 56890870 | 56888670 | ID=MS.gene79284 |
| chr1.4 | mRNA | 56888670 | 56890870 | 56888670 | ID=MS.gene79284.t1;Parent=MS.gene79284 |
| chr1.4 | exon | 56888670 | 56889523 | 56888670 | ID=MS.gene79284.t1.exon1;Parent=MS.gene79284.t1 |
| chr1.4 | CDS | 56888670 | 56889523 | 56888670 | ID=cds.MS.gene79284.t1;Parent=MS.gene79284.t1 |
| chr1.4 | exon | 56889727 | 56889798 | 56889727 | ID=MS.gene79284.t1.exon2;Parent=MS.gene79284.t1 |
| chr1.4 | CDS | 56889727 | 56889798 | 56889727 | ID=cds.MS.gene79284.t1;Parent=MS.gene79284.t1 |
| chr1.4 | exon | 56889886 | 56890027 | 56889886 | ID=MS.gene79284.t1.exon3;Parent=MS.gene79284.t1 |
| chr1.4 | CDS | 56889886 | 56890027 | 56889886 | ID=cds.MS.gene79284.t1;Parent=MS.gene79284.t1 |
| chr1.4 | exon | 56890514 | 56890722 | 56890514 | ID=MS.gene79284.t1.exon4;Parent=MS.gene79284.t1 |
| chr1.4 | CDS | 56890514 | 56890722 | 56890514 | ID=cds.MS.gene79284.t1;Parent=MS.gene79284.t1 |
| chr1.4 | exon | 56890831 | 56890870 | 56890831 | ID=MS.gene79284.t1.exon5;Parent=MS.gene79284.t1 |
| chr1.4 | CDS | 56890831 | 56890870 | 56890831 | ID=cds.MS.gene79284.t1;Parent=MS.gene79284.t1 |
| Gene Sequence |
| Protein sequence |
