Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79406.t1 | XP_003598997.1 | 91.3 | 623 | 50 | 1 | 12 | 634 | 2 | 620 | 0.00E+00 | 1112.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79406.t1 | Q9FNR3 | 42.0 | 646 | 355 | 8 | 1 | 633 | 1 | 639 | 1.6e-128 | 461.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79406.t1 | G7IZB2 | 91.3 | 623 | 50 | 1 | 12 | 634 | 2 | 620 | 0.0e+00 | 1112.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054183 | MS.gene79406 | 0.801009 | 1.10E-48 | -1.69E-46 |
| MS.gene059009 | MS.gene79406 | 0.814462 | 1.52E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79406 | MS.gene069412 | PPI |
| MS.gene79406 | MS.gene44621 | PPI |
| MS.gene79406 | MS.gene91620 | PPI |
| MS.gene069415 | MS.gene79406 | PPI |
| MS.gene021896 | MS.gene79406 | PPI |
| MS.gene79406 | MS.gene021898 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79406.t1 | MTR_3g025900 | 91.332 | 623 | 50 | 1 | 12 | 634 | 2 | 620 | 0.0 | 1142 |
| MS.gene79406.t1 | MTR_7g013770 | 41.150 | 678 | 351 | 9 | 1 | 633 | 3 | 677 | 7.86e-176 | 515 |
| MS.gene79406.t1 | MTR_4g103540 | 38.519 | 540 | 301 | 9 | 117 | 633 | 160 | 691 | 6.51e-117 | 364 |
| MS.gene79406.t1 | MTR_8g021330 | 34.423 | 581 | 334 | 11 | 89 | 633 | 46 | 615 | 8.85e-103 | 325 |
| MS.gene79406.t1 | MTR_5g073450 | 31.992 | 522 | 331 | 10 | 120 | 626 | 125 | 637 | 3.92e-88 | 288 |
| MS.gene79406.t1 | MTR_1g090620 | 31.481 | 540 | 316 | 10 | 119 | 626 | 128 | 645 | 4.32e-88 | 288 |
| MS.gene79406.t1 | MTR_7g026630 | 35.116 | 430 | 266 | 6 | 206 | 622 | 221 | 650 | 5.40e-84 | 277 |
| MS.gene79406.t1 | MTR_1g057560 | 31.660 | 518 | 317 | 8 | 119 | 620 | 127 | 623 | 6.96e-84 | 276 |
| MS.gene79406.t1 | MTR_3g031130 | 29.560 | 636 | 407 | 14 | 14 | 626 | 6 | 623 | 1.36e-80 | 267 |
| MS.gene79406.t1 | MTR_6g033310 | 31.094 | 521 | 329 | 7 | 119 | 623 | 220 | 726 | 8.22e-77 | 259 |
| MS.gene79406.t1 | MTR_5g073460 | 31.602 | 462 | 304 | 6 | 175 | 626 | 237 | 696 | 5.48e-70 | 240 |
| MS.gene79406.t1 | MTR_2g096230 | 30.331 | 544 | 343 | 11 | 86 | 623 | 69 | 582 | 1.39e-69 | 237 |
| MS.gene79406.t1 | MTR_4g062330 | 28.794 | 514 | 340 | 9 | 122 | 621 | 102 | 603 | 2.93e-61 | 215 |
| MS.gene79406.t1 | MTR_1g117090 | 29.101 | 567 | 328 | 11 | 119 | 627 | 123 | 673 | 2.23e-59 | 211 |
| MS.gene79406.t1 | MTR_1g067460 | 27.725 | 523 | 329 | 10 | 123 | 620 | 101 | 599 | 1.90e-58 | 207 |
| MS.gene79406.t1 | MTR_1g067480 | 27.168 | 519 | 344 | 13 | 123 | 624 | 103 | 604 | 1.55e-56 | 202 |
| MS.gene79406.t1 | MTR_5g073620 | 28.472 | 432 | 270 | 8 | 195 | 616 | 287 | 689 | 3.68e-46 | 176 |
| MS.gene79406.t1 | MTR_5g073620 | 25.468 | 267 | 169 | 7 | 368 | 626 | 828 | 1072 | 3.28e-13 | 73.6 |
| MS.gene79406.t1 | MTR_5g074130 | 26.941 | 438 | 293 | 9 | 195 | 620 | 251 | 673 | 1.38e-35 | 143 |
| MS.gene79406.t1 | MTR_5g073480 | 24.771 | 436 | 260 | 7 | 184 | 611 | 245 | 620 | 1.91e-33 | 136 |
| MS.gene79406.t1 | MTR_1g009620 | 27.249 | 389 | 251 | 9 | 263 | 630 | 290 | 667 | 1.80e-31 | 130 |
| MS.gene79406.t1 | MTR_3g464010 | 25.901 | 444 | 284 | 12 | 196 | 620 | 249 | 666 | 4.97e-31 | 129 |
| MS.gene79406.t1 | MTR_4g008260 | 26.742 | 445 | 295 | 12 | 196 | 625 | 216 | 644 | 1.36e-27 | 118 |
| MS.gene79406.t1 | MTR_1g017910 | 26.359 | 368 | 245 | 10 | 249 | 594 | 297 | 660 | 4.62e-26 | 114 |
| MS.gene79406.t1 | MTR_5g073770 | 34.320 | 169 | 109 | 1 | 194 | 360 | 199 | 367 | 1.24e-25 | 109 |
| MS.gene79406.t1 | MTR_5g073920 | 24.416 | 471 | 314 | 14 | 171 | 626 | 220 | 663 | 6.95e-24 | 107 |
| MS.gene79406.t1 | MTR_5g093530 | 25.464 | 377 | 234 | 11 | 227 | 595 | 205 | 542 | 4.30e-22 | 100 |
| MS.gene79406.t1 | MTR_0229s0040 | 32.143 | 196 | 110 | 5 | 454 | 630 | 31 | 222 | 1.81e-18 | 85.5 |
| MS.gene79406.t1 | MTR_5g073780 | 28.736 | 174 | 117 | 3 | 458 | 625 | 54 | 226 | 1.89e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79406.t1 | AT5G61010 | 41.641 | 646 | 357 | 7 | 1 | 633 | 1 | 639 | 3.99e-165 | 487 |
| MS.gene79406.t1 | AT5G61010 | 41.641 | 646 | 357 | 7 | 1 | 633 | 1 | 639 | 3.99e-165 | 487 |
| MS.gene79406.t1 | AT3G29400 | 37.160 | 662 | 362 | 11 | 14 | 633 | 9 | 658 | 6.22e-138 | 417 |
| MS.gene79406.t1 | AT5G50380 | 38.475 | 577 | 309 | 9 | 86 | 633 | 123 | 682 | 8.06e-131 | 400 |
| MS.gene79406.t1 | AT3G14090 | 35.514 | 535 | 304 | 8 | 122 | 622 | 86 | 613 | 2.04e-104 | 330 |
| MS.gene79406.t1 | AT1G54090 | 33.559 | 590 | 329 | 11 | 89 | 631 | 49 | 622 | 7.84e-97 | 310 |
| MS.gene79406.t1 | AT1G72470 | 33.446 | 592 | 331 | 10 | 89 | 633 | 56 | 631 | 7.04e-95 | 305 |
| MS.gene79406.t1 | AT5G03540 | 32.314 | 523 | 308 | 7 | 123 | 622 | 16 | 515 | 1.25e-89 | 288 |
| MS.gene79406.t1 | AT5G03540 | 32.314 | 523 | 308 | 7 | 123 | 622 | 131 | 630 | 8.18e-89 | 289 |
| MS.gene79406.t1 | AT5G03540 | 31.725 | 539 | 316 | 8 | 123 | 622 | 131 | 656 | 7.21e-86 | 282 |
| MS.gene79406.t1 | AT5G52340 | 30.814 | 516 | 326 | 8 | 119 | 622 | 127 | 623 | 1.03e-81 | 270 |
| MS.gene79406.t1 | AT5G58430 | 28.189 | 635 | 410 | 13 | 14 | 623 | 6 | 619 | 1.03e-79 | 265 |
| MS.gene79406.t1 | AT1G07000 | 28.814 | 649 | 366 | 17 | 14 | 623 | 6 | 597 | 1.64e-72 | 245 |
| MS.gene79406.t1 | AT5G13990 | 32.397 | 534 | 332 | 12 | 116 | 634 | 174 | 693 | 9.30e-72 | 245 |
| MS.gene79406.t1 | AT1G07725 | 29.856 | 556 | 356 | 12 | 89 | 634 | 72 | 603 | 3.40e-70 | 239 |
| MS.gene79406.t1 | AT5G59730 | 30.071 | 562 | 348 | 12 | 86 | 624 | 61 | 600 | 7.90e-69 | 236 |
| MS.gene79406.t1 | AT5G59730 | 30.071 | 562 | 348 | 12 | 86 | 624 | 61 | 600 | 8.39e-69 | 236 |
| MS.gene79406.t1 | AT5G13150 | 30.864 | 486 | 304 | 8 | 165 | 627 | 173 | 649 | 1.40e-68 | 236 |
| MS.gene79406.t1 | AT2G28640 | 30.254 | 552 | 342 | 13 | 84 | 626 | 65 | 582 | 3.13e-68 | 233 |
| MS.gene79406.t1 | AT2G39380 | 28.932 | 515 | 342 | 7 | 123 | 623 | 107 | 611 | 3.87e-68 | 234 |
| MS.gene79406.t1 | AT3G09520 | 28.439 | 538 | 350 | 9 | 103 | 621 | 84 | 605 | 9.27e-67 | 230 |
| MS.gene79406.t1 | AT3G55150 | 30.077 | 522 | 327 | 10 | 123 | 623 | 107 | 611 | 4.43e-64 | 223 |
| MS.gene79406.t1 | AT5G52350 | 28.543 | 508 | 326 | 10 | 140 | 633 | 102 | 586 | 5.39e-60 | 211 |
| MS.gene79406.t1 | AT2G28650 | 27.539 | 512 | 326 | 7 | 110 | 620 | 87 | 554 | 2.33e-52 | 189 |
| MS.gene79406.t1 | AT3G09530 | 26.394 | 538 | 364 | 11 | 103 | 622 | 79 | 602 | 3.24e-52 | 190 |
| MS.gene79406.t1 | AT4G31540 | 25.342 | 438 | 295 | 9 | 201 | 620 | 231 | 654 | 1.06e-32 | 134 |
| MS.gene79406.t1 | AT1G51640 | 25.607 | 453 | 291 | 14 | 203 | 626 | 196 | 631 | 1.10e-23 | 106 |
Find 79 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCTACAATGTTATATTT+TGG | 0.148649 | 3.1:-16782620 | MS.gene79406:CDS |
| AAAACCCTATGTAATTTCTT+TGG | 0.238723 | 3.1:-16782970 | MS.gene79406:CDS |
| CATCGAAAATGTGCTTAAAT+TGG | 0.243970 | 3.1:-16783709 | MS.gene79406:CDS |
| ATCAAGGCACTTGTTGAATA+TGG | 0.262018 | 3.1:-16783228 | MS.gene79406:CDS |
| CGGCCTCACCAAAATTTAAA+AGG | 0.270456 | 3.1:+16783520 | None:intergenic |
| TTTGTTGCAAAGTTTGAGTT+AGG | 0.281815 | 3.1:+16784156 | None:intergenic |
| TCTTCGCGAAGTTCTTTATC+AGG | 0.287927 | 3.1:+16782745 | None:intergenic |
| CATCGACAATAAGAAGATTA+AGG | 0.292606 | 3.1:+16783199 | None:intergenic |
| ATGAGTTTGGAGACAAATAT+TGG | 0.301189 | 3.1:-16784227 | MS.gene79406:CDS |
| CCAGGAAAACATTTATTTGA+TGG | 0.305526 | 3.1:+16783291 | None:intergenic |
| TCTTCACAGGTTGTGATCAT+AGG | 0.324664 | 3.1:+16784434 | None:intergenic |
| CACAAACTTCTAAGAAGCTT+TGG | 0.327792 | 3.1:-16783366 | MS.gene79406:CDS |
| TGAAGATAAGGTAATGAGTT+TGG | 0.328772 | 3.1:-16784240 | MS.gene79406:CDS |
| TTTCATCAATTGAACACAAT+TGG | 0.334191 | 3.1:+16784309 | None:intergenic |
| GTAATTTCTTTGGAGATGTC+TGG | 0.338257 | 3.1:-16782960 | MS.gene79406:CDS |
| GTTCAATTGCTTGCAACTTA+AGG | 0.341266 | 3.1:-16783116 | MS.gene79406:CDS |
| ATACACAATATCAACTCTAT+TGG | 0.354741 | 3.1:+16783977 | None:intergenic |
| CTCGAATCCATTTCTTTATC+CGG | 0.355857 | 3.1:+16783667 | None:intergenic |
| TCGCGAAGATCTACAAATAT+CGG | 0.379075 | 3.1:-16782731 | MS.gene79406:CDS |
| GGCGAGCAGTACTATAGATT+TGG | 0.401193 | 3.1:-16783880 | MS.gene79406:CDS |
| ATTGTGTATGATGGATCATT+TGG | 0.401464 | 3.1:-16783963 | MS.gene79406:CDS |
| CATTCATTACATGGTTCAAA+AGG | 0.407674 | 3.1:-16783004 | MS.gene79406:CDS |
| CTCTGAAATATCTCGAAGTT+CGG | 0.417818 | 3.1:-16783550 | MS.gene79406:CDS |
| CTTGGATTTGTTGCACAAGT+TGG | 0.424158 | 3.1:+16783071 | None:intergenic |
| TGAATCACCGGATAAAGAAA+TGG | 0.440018 | 3.1:-16783674 | MS.gene79406:CDS |
| TGCTTCTAGGAGAGAAGCCT+TGG | 0.442784 | 3.1:-16783769 | MS.gene79406:CDS |
| AAGCACATTCTCGGAGACTT+TGG | 0.456443 | 3.1:-16783594 | MS.gene79406:CDS |
| GCTTAAATGTGTTGAAGATA+AGG | 0.460156 | 3.1:-16784252 | MS.gene79406:CDS |
| AGAGAAACAAAACTGATAAA+CGG | 0.460482 | 3.1:+16783569 | None:intergenic |
| TGAGAAGTGGATTAAGTATA+CGG | 0.464454 | 3.1:-16782647 | MS.gene79406:CDS |
| GTGTTCAATTGATGAAAGAA+AGG | 0.466489 | 3.1:-16784303 | MS.gene79406:CDS |
| TAGTACTGCTCGCCTCGAAT+TGG | 0.469538 | 3.1:+16783889 | None:intergenic |
| GAATTGAAAGACATGTAATC+AGG | 0.471319 | 3.1:+16783999 | None:intergenic |
| ATTGTTCAGACGTATCTTGT+TGG | 0.471926 | 3.1:-16783633 | MS.gene79406:CDS |
| GTCAAGACTTGAGGATGAGT+TGG | 0.479252 | 3.1:-16784057 | MS.gene79406:CDS |
| TTGTTTACTTGACATGTATG+AGG | 0.480736 | 3.1:-16783463 | MS.gene79406:CDS |
| AAATTGTGTAAGCACATTCT+CGG | 0.482067 | 3.1:-16783603 | MS.gene79406:CDS |
| AGTGGCGTTGTTTGAATCAC+CGG | 0.482832 | 3.1:-16783686 | MS.gene79406:CDS |
| TTTGGTGAGGCCGTAACAAT+GGG | 0.483386 | 3.1:-16783510 | MS.gene79406:CDS |
| GTTTGCTTCAAATTACCATC+AGG | 0.485110 | 3.1:-16783811 | MS.gene79406:CDS |
| GAATGTAAATTTGAAGCATA+AGG | 0.485383 | 3.1:-16784120 | MS.gene79406:CDS |
| CACATGTTGATCTTCTTCAC+AGG | 0.485970 | 3.1:+16784421 | None:intergenic |
| CCGGTATAACTTCGGTAAGC+AGG | 0.491544 | 3.1:+16782691 | None:intergenic |
| GAAGTATACAAAACACAGAC+AGG | 0.498418 | 3.1:-16782778 | MS.gene79406:CDS |
| AGCAACATCAGTGTATAACT+TGG | 0.499600 | 3.1:+16783053 | None:intergenic |
| CCTGCTTACCGAAGTTATAC+CGG | 0.507813 | 3.1:-16782691 | MS.gene79406:CDS |
| TTGTTGCAAAGTTTGAGTTA+GGG | 0.513478 | 3.1:+16784157 | None:intergenic |
| CGTCTAACATTGATGAGAAG+TGG | 0.516919 | 3.1:-16782660 | MS.gene79406:CDS |
| AGAGTTGATATTGTGTATGA+TGG | 0.520793 | 3.1:-16783972 | MS.gene79406:CDS |
| GATGAATAACATTCATTACA+TGG | 0.527155 | 3.1:-16783013 | MS.gene79406:CDS |
| TCATGACATATCTTGTAAGA+TGG | 0.530309 | 3.1:+16783256 | None:intergenic |
| TTGAGATCTTCAAGTACAGA+AGG | 0.532317 | 3.1:+16783852 | None:intergenic |
| CATCTCCAAAGAAATTACAT+AGG | 0.547332 | 3.1:+16782965 | None:intergenic |
| ATCTCCAAAGAAATTACATA+GGG | 0.549584 | 3.1:+16782966 | None:intergenic |
| GTCTGGCTTCGCCGACATGT+TGG | 0.553239 | 3.1:-16782943 | MS.gene79406:CDS |
| GAAGCTATGAGAAGGTGACT+TGG | 0.564885 | 3.1:-16782900 | MS.gene79406:CDS |
| AATGTTAGACGAGTTTCTAC+CGG | 0.566162 | 3.1:+16782672 | None:intergenic |
| AAACATGACAAAACTCCTGA+TGG | 0.576793 | 3.1:+16783796 | None:intergenic |
| TAGTGACGGTAGCCAATTCG+AGG | 0.576966 | 3.1:-16783901 | MS.gene79406:CDS |
| CGTGTGTGCTCCCATTGTTA+CGG | 0.593909 | 3.1:+16783500 | None:intergenic |
| GAGGAAAGTTTATCGAATTG+CGG | 0.602785 | 3.1:-16782853 | MS.gene79406:CDS |
| AGTACTTTCTGTGTTTAGTG+AGG | 0.603239 | 3.1:-16782872 | MS.gene79406:CDS |
| AATGAGAAAGTACTCATCCA+AGG | 0.603868 | 3.1:+16783752 | None:intergenic |
| AGAAAATCAACGAGGTGTCG+AGG | 0.606797 | 3.1:-16783926 | MS.gene79406:CDS |
| AGATGGTGAACACCTCCACC+AGG | 0.608901 | 3.1:+16783273 | None:intergenic |
| AGTTGTTATGTCAAGACTTG+AGG | 0.611977 | 3.1:-16784066 | MS.gene79406:CDS |
| TGAAACTTCGACTGATCTTG+CGG | 0.612837 | 3.1:-16783178 | MS.gene79406:CDS |
| AGTTTCTACCGGTATAACTT+CGG | 0.613307 | 3.1:+16782683 | None:intergenic |
| TGGATCATTTGGTTCAGTTG+AGG | 0.620620 | 3.1:-16783952 | MS.gene79406:CDS |
| AAAATGTGCTTAAATTGGAG+TGG | 0.627109 | 3.1:-16783704 | MS.gene79406:CDS |
| GCACAAGTTGGATTCTAGAG+TGG | 0.627118 | 3.1:+16783083 | None:intergenic |
| TTATGCTAGAAGCTATGAGA+AGG | 0.634466 | 3.1:-16782908 | MS.gene79406:CDS |
| ATATGTCATGAATTACATCA+AGG | 0.636314 | 3.1:-16783244 | MS.gene79406:CDS |
| GCTGAAACATTCCAACATGT+CGG | 0.640487 | 3.1:+16782932 | None:intergenic |
| TATACAAAACACAGACAGGG+TGG | 0.686135 | 3.1:-16782774 | MS.gene79406:CDS |
| GAGGTGTCGAGGAGTAGTGA+CGG | 0.714989 | 3.1:-16783915 | MS.gene79406:CDS |
| AAGTATACAAAACACAGACA+GGG | 0.732452 | 3.1:-16782777 | MS.gene79406:CDS |
| CTGTGAAGAAGATCAACATG+TGG | 0.761131 | 3.1:-16784420 | MS.gene79406:CDS |
| TGAGGATGAGAAAATCAACG+AGG | 0.847265 | 3.1:-16783934 | MS.gene79406:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTGAGTATTTAAAAATTGT+TGG | - | chr3.1:16782825-16782844 | MS.gene79406:CDS | 20.0% |
| !!! | AAGTAAACAAAACAGTTTTT+CGG | + | chr3.1:16783543-16783562 | None:intergenic | 20.0% |
| !!! | TGATCTACAATGTTATATTT+TGG | - | chr3.1:16784396-16784415 | MS.gene79406:CDS | 20.0% |
| ! | AAAACCCTATGTAATTTCTT+TGG | - | chr3.1:16784046-16784065 | MS.gene79406:CDS | 25.0% |
| ! | AGAGAAACAAAACTGATAAA+CGG | + | chr3.1:16783450-16783469 | None:intergenic | 25.0% |
| ! | ATACACAATATCAACTCTAT+TGG | + | chr3.1:16783042-16783061 | None:intergenic | 25.0% |
| ! | ATATGTCATGAATTACATCA+AGG | - | chr3.1:16783772-16783791 | MS.gene79406:CDS | 25.0% |
| ! | ATCTCCAAAGAAATTACATA+GGG | + | chr3.1:16784053-16784072 | None:intergenic | 25.0% |
| ! | GATGAATAACATTCATTACA+TGG | - | chr3.1:16784003-16784022 | MS.gene79406:CDS | 25.0% |
| ! | TTTCATCAATTGAACACAAT+TGG | + | chr3.1:16782710-16782729 | None:intergenic | 25.0% |
| !! | AGTAAACAAAACAGTTTTTC+GGG | + | chr3.1:16783542-16783561 | None:intergenic | 25.0% |
| !! | GAATGTAAATTTGAAGCATA+AGG | - | chr3.1:16782896-16782915 | MS.gene79406:CDS | 25.0% |
| !! | GTTTTGTGCCTTTTAAATTT+TGG | - | chr3.1:16783488-16783507 | MS.gene79406:CDS | 25.0% |
| !!! | AAAGATTTTAGTACTGCTTT+TGG | - | chr3.1:16784214-16784233 | MS.gene79406:CDS | 25.0% |
| !!! | TATATTTTGGATCTTTTCCA+TGG | - | chr3.1:16784409-16784428 | MS.gene79406:CDS | 25.0% |
| AAAATGTGCTTAAATTGGAG+TGG | - | chr3.1:16783312-16783331 | MS.gene79406:CDS | 30.0% | |
| AAATTGTGTAAGCACATTCT+CGG | - | chr3.1:16783413-16783432 | MS.gene79406:CDS | 30.0% | |
| AAGTATACAAAACACAGACA+GGG | - | chr3.1:16784239-16784258 | MS.gene79406:CDS | 30.0% | |
| ATGAGTTTGGAGACAAATAT+TGG | - | chr3.1:16782789-16782808 | MS.gene79406:CDS | 30.0% | |
| CATCGAAAATGTGCTTAAAT+TGG | - | chr3.1:16783307-16783326 | MS.gene79406:CDS | 30.0% | |
| CATCGACAATAAGAAGATTA+AGG | + | chr3.1:16783820-16783839 | None:intergenic | 30.0% | |
| CATCTCCAAAGAAATTACAT+AGG | + | chr3.1:16784054-16784073 | None:intergenic | 30.0% | |
| CATTCATTACATGGTTCAAA+AGG | - | chr3.1:16784012-16784031 | MS.gene79406:CDS | 30.0% | |
| CCAGGAAAACATTTATTTGA+TGG | + | chr3.1:16783728-16783747 | None:intergenic | 30.0% | |
| GAATTGAAAGACATGTAATC+AGG | + | chr3.1:16783020-16783039 | None:intergenic | 30.0% | |
| GCTTAAATGTGTTGAAGATA+AGG | - | chr3.1:16782764-16782783 | MS.gene79406:CDS | 30.0% | |
| GTGTTCAATTGATGAAAGAA+AGG | - | chr3.1:16782713-16782732 | MS.gene79406:CDS | 30.0% | |
| TCATGACATATCTTGTAAGA+TGG | + | chr3.1:16783763-16783782 | None:intergenic | 30.0% | |
| TGAAGATAAGGTAATGAGTT+TGG | - | chr3.1:16782776-16782795 | MS.gene79406:CDS | 30.0% | |
| TTGTTTACTTGACATGTATG+AGG | - | chr3.1:16783553-16783572 | MS.gene79406:CDS | 30.0% | |
| ! | CCATCAAATAAATGTTTTCC+TGG | - | chr3.1:16783725-16783744 | MS.gene79406:CDS | 30.0% |
| ! | TCAAATAAATGTTTTCCTGG+TGG | - | chr3.1:16783728-16783747 | MS.gene79406:CDS | 30.0% |
| ! | TTGTTGCAAAGTTTGAGTTA+GGG | + | chr3.1:16782862-16782881 | None:intergenic | 30.0% |
| ! | TTTGTTGCAAAGTTTGAGTT+AGG | + | chr3.1:16782863-16782882 | None:intergenic | 30.0% |
| !! | AGAGTTGATATTGTGTATGA+TGG | - | chr3.1:16783044-16783063 | MS.gene79406:CDS | 30.0% |
| !! | ATTGTGTATGATGGATCATT+TGG | - | chr3.1:16783053-16783072 | MS.gene79406:CDS | 30.0% |
| !! | TGAGAAGTGGATTAAGTATA+CGG | - | chr3.1:16784369-16784388 | MS.gene79406:CDS | 30.0% |
| AAACATGACAAAACTCCTGA+TGG | + | chr3.1:16783223-16783242 | None:intergenic | 35.0% | |
| AATGTTAGACGAGTTTCTAC+CGG | + | chr3.1:16784347-16784366 | None:intergenic | 35.0% | |
| AGCAACATCAGTGTATAACT+TGG | + | chr3.1:16783966-16783985 | None:intergenic | 35.0% | |
| AGTACTTTCTGTGTTTAGTG+AGG | - | chr3.1:16784144-16784163 | MS.gene79406:CDS | 35.0% | |
| AGTTGTTATGTCAAGACTTG+AGG | - | chr3.1:16782950-16782969 | MS.gene79406:CDS | 35.0% | |
| AGTTTCTACCGGTATAACTT+CGG | + | chr3.1:16784336-16784355 | None:intergenic | 35.0% | |
| ATTGTTCAGACGTATCTTGT+TGG | - | chr3.1:16783383-16783402 | MS.gene79406:CDS | 35.0% | |
| CTCGAATCCATTTCTTTATC+CGG | + | chr3.1:16783352-16783371 | None:intergenic | 35.0% | |
| GAAGTATACAAAACACAGAC+AGG | - | chr3.1:16784238-16784257 | MS.gene79406:CDS | 35.0% | |
| GAGGAAAGTTTATCGAATTG+CGG | - | chr3.1:16784163-16784182 | MS.gene79406:CDS | 35.0% | |
| GTTCAATTGCTTGCAACTTA+AGG | - | chr3.1:16783900-16783919 | MS.gene79406:CDS | 35.0% | |
| GTTTGCTTCAAATTACCATC+AGG | - | chr3.1:16783205-16783224 | MS.gene79406:CDS | 35.0% | |
| TCGCGAAGATCTACAAATAT+CGG | - | chr3.1:16784285-16784304 | MS.gene79406:CDS | 35.0% | |
| TGAATCACCGGATAAAGAAA+TGG | - | chr3.1:16783342-16783361 | MS.gene79406:CDS | 35.0% | |
| TTATGCTAGAAGCTATGAGA+AGG | - | chr3.1:16784108-16784127 | MS.gene79406:CDS | 35.0% | |
| TTGAGATCTTCAAGTACAGA+AGG | + | chr3.1:16783167-16783186 | None:intergenic | 35.0% | |
| ! | AATAAATGTTTTCCTGGTGG+AGG | - | chr3.1:16783731-16783750 | MS.gene79406:CDS | 35.0% |
| ! | ATCAAGGCACTTGTTGAATA+TGG | - | chr3.1:16783788-16783807 | MS.gene79406:CDS | 35.0% |
| ! | CACAAACTTCTAAGAAGCTT+TGG | - | chr3.1:16783650-16783669 | MS.gene79406:CDS | 35.0% |
| ! | GCAAAGATTTTTGTGAACCA+TGG | + | chr3.1:16784429-16784448 | None:intergenic | 35.0% |
| ! | GGTTTTTGAACATTTAGCAG+TGG | - | chr3.1:16783574-16783593 | MS.gene79406:CDS | 35.0% |
| ! | GTAATTTCTTTGGAGATGTC+TGG | - | chr3.1:16784056-16784075 | MS.gene79406:CDS | 35.0% |
| ! | GTCATGTTTTCATTGCTTCT+AGG | - | chr3.1:16783234-16783253 | MS.gene79406:CDS | 35.0% |
| ! | TGAGTTGAGAAAAACTCTCT+TGG | - | chr3.1:16782674-16782693 | MS.gene79406:CDS | 35.0% |
| !! | AATGAGAAAGTACTCATCCA+AGG | + | chr3.1:16783267-16783286 | None:intergenic | 35.0% |
| !! | CTCTGAAATATCTCGAAGTT+CGG | - | chr3.1:16783466-16783485 | MS.gene79406:CDS | 35.0% |
| !! | GAAGTTGATTCTTTTGTCAG+AGG | - | chr3.1:16783620-16783639 | MS.gene79406:CDS | 35.0% |
| !! | GTGCCTTTTAAATTTTGGTG+AGG | - | chr3.1:16783493-16783512 | MS.gene79406:CDS | 35.0% |
| CACATGTTGATCTTCTTCAC+AGG | + | chr3.1:16782598-16782617 | None:intergenic | 40.0% | |
| CGGCCTCACCAAAATTTAAA+AGG | + | chr3.1:16783499-16783518 | None:intergenic | 40.0% | |
| CGTCTAACATTGATGAGAAG+TGG | - | chr3.1:16784356-16784375 | MS.gene79406:CDS | 40.0% | |
| CTGTGAAGAAGATCAACATG+TGG | - | chr3.1:16782596-16782615 | MS.gene79406:CDS | 40.0% | |
| GCTGAAACATTCCAACATGT+CGG | + | chr3.1:16784087-16784106 | None:intergenic | 40.0% | |
| TATACAAAACACAGACAGGG+TGG | - | chr3.1:16784242-16784261 | MS.gene79406:CDS | 40.0% | |
| TCTTCACAGGTTGTGATCAT+AGG | + | chr3.1:16782585-16782604 | None:intergenic | 40.0% | |
| TCTTCGCGAAGTTCTTTATC+AGG | + | chr3.1:16784274-16784293 | None:intergenic | 40.0% | |
| TGAAACTTCGACTGATCTTG+CGG | - | chr3.1:16783838-16783857 | MS.gene79406:CDS | 40.0% | |
| TGAGGATGAGAAAATCAACG+AGG | - | chr3.1:16783082-16783101 | MS.gene79406:CDS | 40.0% | |
| ! | TGGATCATTTGGTTCAGTTG+AGG | - | chr3.1:16783064-16783083 | MS.gene79406:CDS | 40.0% |
| !! | CTTGGATTTGTTGCACAAGT+TGG | + | chr3.1:16783948-16783967 | None:intergenic | 40.0% |
| AAGCACATTCTCGGAGACTT+TGG | - | chr3.1:16783422-16783441 | MS.gene79406:CDS | 45.0% | |
| AGTGGCGTTGTTTGAATCAC+CGG | - | chr3.1:16783330-16783349 | MS.gene79406:CDS | 45.0% | |
| CCTGCTTACCGAAGTTATAC+CGG | - | chr3.1:16784325-16784344 | MS.gene79406:CDS | 45.0% | |
| GAAGCTATGAGAAGGTGACT+TGG | - | chr3.1:16784116-16784135 | MS.gene79406:CDS | 45.0% | |
| GGCGAGCAGTACTATAGATT+TGG | - | chr3.1:16783136-16783155 | MS.gene79406:CDS | 45.0% | |
| GTCAAGACTTGAGGATGAGT+TGG | - | chr3.1:16782959-16782978 | MS.gene79406:CDS | 45.0% | |
| TTTGGTGAGGCCGTAACAAT+GGG | - | chr3.1:16783506-16783525 | MS.gene79406:CDS | 45.0% | |
| ! | GCACAAGTTGGATTCTAGAG+TGG | + | chr3.1:16783936-16783955 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGCCGTAACAA+TGG | - | chr3.1:16783505-16783524 | MS.gene79406:CDS | 45.0% |
| !! | AGAAAATCAACGAGGTGTCG+AGG | - | chr3.1:16783090-16783109 | MS.gene79406:CDS | 45.0% |
| CCGGTATAACTTCGGTAAGC+AGG | + | chr3.1:16784328-16784347 | None:intergenic | 50.0% | |
| CGTGTGTGCTCCCATTGTTA+CGG | + | chr3.1:16783519-16783538 | None:intergenic | 50.0% | |
| TAGTACTGCTCGCCTCGAAT+TGG | + | chr3.1:16783130-16783149 | None:intergenic | 50.0% | |
| TAGTGACGGTAGCCAATTCG+AGG | - | chr3.1:16783115-16783134 | MS.gene79406:CDS | 50.0% | |
| ! | TGCTTCTAGGAGAGAAGCCT+TGG | - | chr3.1:16783247-16783266 | MS.gene79406:CDS | 50.0% |
| AGATGGTGAACACCTCCACC+AGG | + | chr3.1:16783746-16783765 | None:intergenic | 55.0% | |
| !! | GAGGTGTCGAGGAGTAGTGA+CGG | - | chr3.1:16783101-16783120 | MS.gene79406:CDS | 55.0% |
| ! | GTCTGGCTTCGCCGACATGT+TGG | - | chr3.1:16784073-16784092 | MS.gene79406:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 16782567 | 16784471 | 16782567 | ID=MS.gene79406 |
| chr3.1 | mRNA | 16782567 | 16784471 | 16782567 | ID=MS.gene79406.t1;Parent=MS.gene79406 |
| chr3.1 | exon | 16782567 | 16784471 | 16782567 | ID=MS.gene79406.t1.exon1;Parent=MS.gene79406.t1 |
| chr3.1 | CDS | 16782567 | 16784471 | 16782567 | ID=cds.MS.gene79406.t1;Parent=MS.gene79406.t1 |
| Gene Sequence |
| Protein sequence |
