Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79408.t1 | XP_003598997.1 | 91 | 623 | 52 | 1 | 12 | 634 | 2 | 620 | 0.00E+00 | 1111.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79408.t1 | Q9FNR3 | 41.3 | 646 | 359 | 7 | 1 | 633 | 1 | 639 | 4.0e-124 | 446.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79408.t1 | G7IZB2 | 91.0 | 623 | 52 | 1 | 12 | 634 | 2 | 620 | 0.0e+00 | 1111.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053356 | MS.gene79408 | 0.800279 | 1.55E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene069415 | MS.gene79408 | PPI |
| MS.gene79408 | MS.gene069412 | PPI |
| MS.gene79408 | MS.gene021898 | PPI |
| MS.gene79408 | MS.gene021896 | PPI |
| MS.gene79408 | MS.gene44621 | PPI |
| MS.gene79408 | MS.gene91620 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79408.t1 | MTR_3g025900 | 91.011 | 623 | 52 | 1 | 12 | 634 | 2 | 620 | 0.0 | 1137 |
| MS.gene79408.t1 | MTR_7g013770 | 40.560 | 678 | 355 | 8 | 1 | 633 | 3 | 677 | 3.57e-173 | 509 |
| MS.gene79408.t1 | MTR_4g103540 | 37.918 | 538 | 307 | 8 | 117 | 633 | 160 | 691 | 5.88e-114 | 357 |
| MS.gene79408.t1 | MTR_8g021330 | 34.835 | 577 | 328 | 11 | 89 | 628 | 46 | 611 | 1.80e-99 | 317 |
| MS.gene79408.t1 | MTR_7g026630 | 34.842 | 442 | 272 | 7 | 206 | 634 | 221 | 659 | 1.89e-85 | 281 |
| MS.gene79408.t1 | MTR_1g090620 | 30.373 | 563 | 336 | 12 | 89 | 620 | 102 | 639 | 9.83e-84 | 276 |
| MS.gene79408.t1 | MTR_5g073450 | 30.962 | 520 | 339 | 9 | 120 | 626 | 125 | 637 | 1.03e-82 | 273 |
| MS.gene79408.t1 | MTR_1g057560 | 30.534 | 524 | 315 | 8 | 119 | 620 | 127 | 623 | 2.24e-80 | 266 |
| MS.gene79408.t1 | MTR_6g033310 | 30.975 | 523 | 329 | 8 | 119 | 624 | 220 | 727 | 1.47e-77 | 261 |
| MS.gene79408.t1 | MTR_3g031130 | 32.880 | 441 | 279 | 6 | 195 | 626 | 191 | 623 | 1.10e-74 | 251 |
| MS.gene79408.t1 | MTR_5g073460 | 31.209 | 455 | 302 | 5 | 181 | 626 | 244 | 696 | 1.04e-67 | 234 |
| MS.gene79408.t1 | MTR_2g096230 | 30.443 | 542 | 341 | 11 | 86 | 621 | 69 | 580 | 9.97e-67 | 229 |
| MS.gene79408.t1 | MTR_1g067460 | 28.626 | 524 | 323 | 12 | 123 | 620 | 101 | 599 | 2.34e-59 | 209 |
| MS.gene79408.t1 | MTR_1g067480 | 27.660 | 517 | 340 | 12 | 123 | 622 | 103 | 602 | 2.64e-58 | 206 |
| MS.gene79408.t1 | MTR_4g062330 | 28.599 | 514 | 341 | 9 | 122 | 621 | 102 | 603 | 3.57e-58 | 207 |
| MS.gene79408.t1 | MTR_1g117090 | 28.986 | 552 | 334 | 9 | 119 | 620 | 123 | 666 | 1.33e-57 | 206 |
| MS.gene79408.t1 | MTR_5g073620 | 26.754 | 456 | 289 | 9 | 189 | 634 | 281 | 701 | 2.76e-43 | 167 |
| MS.gene79408.t1 | MTR_5g073620 | 28.571 | 175 | 118 | 3 | 458 | 626 | 899 | 1072 | 3.18e-11 | 67.0 |
| MS.gene79408.t1 | MTR_5g074130 | 25.799 | 438 | 298 | 9 | 195 | 620 | 251 | 673 | 2.67e-32 | 133 |
| MS.gene79408.t1 | MTR_5g073480 | 24.766 | 428 | 257 | 6 | 189 | 611 | 253 | 620 | 3.84e-32 | 132 |
| MS.gene79408.t1 | MTR_1g009620 | 24.117 | 651 | 403 | 18 | 13 | 633 | 73 | 662 | 9.92e-32 | 131 |
| MS.gene79408.t1 | MTR_3g464010 | 25.901 | 444 | 284 | 12 | 196 | 620 | 249 | 666 | 1.89e-29 | 124 |
| MS.gene79408.t1 | MTR_4g008260 | 28.238 | 386 | 247 | 11 | 257 | 629 | 278 | 646 | 6.15e-27 | 116 |
| MS.gene79408.t1 | MTR_1g017910 | 26.630 | 368 | 244 | 10 | 249 | 594 | 297 | 660 | 1.81e-25 | 112 |
| MS.gene79408.t1 | MTR_5g073770 | 30.460 | 174 | 119 | 1 | 189 | 360 | 194 | 367 | 3.05e-21 | 96.7 |
| MS.gene79408.t1 | MTR_5g073920 | 24.658 | 438 | 293 | 13 | 195 | 620 | 245 | 657 | 8.48e-21 | 97.4 |
| MS.gene79408.t1 | MTR_5g093530 | 25.868 | 317 | 201 | 8 | 281 | 595 | 258 | 542 | 4.86e-20 | 94.7 |
| MS.gene79408.t1 | MTR_0229s0040 | 31.522 | 184 | 109 | 4 | 454 | 624 | 31 | 210 | 4.47e-19 | 87.4 |
| MS.gene79408.t1 | MTR_5g073900 | 24.619 | 394 | 229 | 11 | 213 | 592 | 1 | 340 | 2.23e-16 | 81.6 |
| MS.gene79408.t1 | MTR_5g073780 | 28.402 | 169 | 114 | 3 | 458 | 620 | 54 | 221 | 6.09e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79408.t1 | AT5G61010 | 42.265 | 627 | 342 | 7 | 20 | 633 | 20 | 639 | 1.44e-159 | 473 |
| MS.gene79408.t1 | AT5G61010 | 42.265 | 627 | 342 | 7 | 20 | 633 | 20 | 639 | 1.44e-159 | 473 |
| MS.gene79408.t1 | AT3G29400 | 37.462 | 662 | 360 | 13 | 14 | 633 | 9 | 658 | 3.72e-134 | 408 |
| MS.gene79408.t1 | AT5G50380 | 38.276 | 580 | 306 | 10 | 86 | 633 | 123 | 682 | 1.50e-127 | 392 |
| MS.gene79408.t1 | AT3G14090 | 35.019 | 534 | 304 | 8 | 122 | 620 | 86 | 611 | 7.73e-103 | 325 |
| MS.gene79408.t1 | AT1G54090 | 32.650 | 585 | 333 | 9 | 89 | 628 | 49 | 617 | 8.06e-94 | 302 |
| MS.gene79408.t1 | AT1G72470 | 33.390 | 587 | 329 | 10 | 89 | 628 | 56 | 627 | 3.44e-92 | 298 |
| MS.gene79408.t1 | AT5G03540 | 32.588 | 537 | 310 | 8 | 107 | 620 | 6 | 513 | 1.29e-88 | 285 |
| MS.gene79408.t1 | AT5G03540 | 31.777 | 557 | 326 | 9 | 89 | 620 | 101 | 628 | 3.56e-88 | 288 |
| MS.gene79408.t1 | AT5G03540 | 30.716 | 573 | 337 | 9 | 89 | 620 | 101 | 654 | 3.09e-85 | 280 |
| MS.gene79408.t1 | AT5G52340 | 31.061 | 528 | 323 | 10 | 107 | 620 | 121 | 621 | 9.06e-79 | 262 |
| MS.gene79408.t1 | AT5G58430 | 33.257 | 436 | 272 | 7 | 195 | 623 | 196 | 619 | 3.66e-76 | 255 |
| MS.gene79408.t1 | AT1G07000 | 28.483 | 646 | 372 | 16 | 14 | 623 | 6 | 597 | 7.31e-74 | 248 |
| MS.gene79408.t1 | AT5G13150 | 31.070 | 486 | 303 | 8 | 165 | 627 | 173 | 649 | 4.93e-69 | 237 |
| MS.gene79408.t1 | AT5G13990 | 31.273 | 534 | 338 | 12 | 116 | 634 | 174 | 693 | 5.43e-67 | 232 |
| MS.gene79408.t1 | AT1G07725 | 29.381 | 565 | 347 | 13 | 89 | 634 | 72 | 603 | 8.46e-67 | 230 |
| MS.gene79408.t1 | AT3G09520 | 28.942 | 539 | 348 | 10 | 103 | 622 | 84 | 606 | 5.24e-64 | 223 |
| MS.gene79408.t1 | AT2G28640 | 30.233 | 516 | 324 | 11 | 120 | 626 | 94 | 582 | 1.14e-63 | 221 |
| MS.gene79408.t1 | AT5G59730 | 30.275 | 545 | 341 | 11 | 101 | 623 | 72 | 599 | 1.63e-63 | 221 |
| MS.gene79408.t1 | AT5G59730 | 30.275 | 545 | 341 | 11 | 101 | 623 | 72 | 599 | 1.66e-63 | 221 |
| MS.gene79408.t1 | AT2G39380 | 28.627 | 517 | 343 | 8 | 123 | 624 | 107 | 612 | 9.96e-63 | 219 |
| MS.gene79408.t1 | AT3G55150 | 29.231 | 520 | 336 | 8 | 123 | 624 | 107 | 612 | 4.24e-59 | 209 |
| MS.gene79408.t1 | AT5G52350 | 28.226 | 496 | 321 | 9 | 140 | 621 | 102 | 576 | 1.06e-56 | 202 |
| MS.gene79408.t1 | AT2G28650 | 29.808 | 416 | 278 | 5 | 206 | 620 | 152 | 554 | 9.59e-50 | 182 |
| MS.gene79408.t1 | AT3G09530 | 25.465 | 538 | 369 | 9 | 101 | 620 | 77 | 600 | 2.27e-49 | 182 |
| MS.gene79408.t1 | AT4G31540 | 25.918 | 463 | 309 | 10 | 180 | 624 | 212 | 658 | 1.79e-33 | 136 |
| MS.gene79408.t1 | AT1G51640 | 25.485 | 412 | 268 | 13 | 203 | 592 | 196 | 590 | 1.33e-21 | 99.8 |
Find 86 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATTTCTTTGGAGATTTC+TGG | 0.100464 | 3.1:-16760529 | MS.gene79408:CDS |
| TGATCTACAATGTTATATTT+TGG | 0.148649 | 3.1:-16760189 | MS.gene79408:CDS |
| TACCGAACTCCGAGATATTT+TGG | 0.173433 | 3.1:+16761117 | None:intergenic |
| GGAGAAACAAAGCTGATAAA+TGG | 0.222224 | 3.1:+16761138 | None:intergenic |
| AAAACCCTATGTAATTTCTT+TGG | 0.238723 | 3.1:-16760539 | MS.gene79408:CDS |
| CATCGAAAATGTGCTTAAAT+TGG | 0.243970 | 3.1:-16761278 | MS.gene79408:CDS |
| CATCGACAATTAGAAGATTA+AGG | 0.252964 | 3.1:+16760768 | None:intergenic |
| GCCATATCTTCATCAGTTCT+AGG | 0.258626 | 3.1:-16761351 | MS.gene79408:CDS |
| ATCAAGGCACTTGTTGAATA+TGG | 0.262018 | 3.1:-16760797 | MS.gene79408:CDS |
| ACTTGACATGTATGAGGTTT+TGG | 0.277794 | 3.1:-16761026 | MS.gene79408:CDS |
| TTTGTTGCAAAGTTTGAGTT+AGG | 0.281815 | 3.1:+16761725 | None:intergenic |
| CGGCCTCACCAAAATTTAAA+AGG | 0.284169 | 3.1:+16761089 | None:intergenic |
| TCTTCGCGAAGTTCTTTATC+AGG | 0.287927 | 3.1:+16760314 | None:intergenic |
| ATGAGTTTGGAGACAAATAT+TGG | 0.301189 | 3.1:-16761796 | MS.gene79408:CDS |
| CCAGGAAAACATTTATTTGA+TGG | 0.305526 | 3.1:+16760860 | None:intergenic |
| TGAGAATGGTGCAAAGATTT+TGG | 0.309875 | 3.1:+16760149 | None:intergenic |
| CAATTGTGTAAGCAGATTCT+TGG | 0.317014 | 3.1:-16761172 | MS.gene79408:CDS |
| CACAAACTTCTAAGAAGCTT+TGG | 0.327792 | 3.1:-16760935 | MS.gene79408:CDS |
| TGAAGATAAGGTAATGAGTT+TGG | 0.328772 | 3.1:-16761809 | MS.gene79408:CDS |
| TTTGATTGATTGAACACAAT+TGG | 0.329865 | 3.1:+16761878 | None:intergenic |
| GCAAGATAAAGAAATGGATT+TGG | 0.330593 | 3.1:-16761237 | MS.gene79408:CDS |
| GTTCAATTGCTTGCAACTTA+AGG | 0.341266 | 3.1:-16760685 | MS.gene79408:CDS |
| GAACTTGTTCAAAGAGCTAA+TGG | 0.347236 | 3.1:-16761667 | MS.gene79408:CDS |
| CAAAAGTTTGATTCTGTGAA+TGG | 0.352739 | 3.1:-16761706 | MS.gene79408:CDS |
| ATACACAATATCAACTCTAT+TGG | 0.354741 | 3.1:+16761546 | None:intergenic |
| TCTTCACAAGCTGAGATCAT+AGG | 0.372051 | 3.1:+16762003 | None:intergenic |
| CAAGATAAAGAAATGGATTT+GGG | 0.378488 | 3.1:-16761236 | MS.gene79408:CDS |
| TCGCGAAGATCTACAAATAT+CGG | 0.379075 | 3.1:-16760300 | MS.gene79408:CDS |
| TCCTAGAACTGATGAAGATA+TGG | 0.393569 | 3.1:+16761350 | None:intergenic |
| AGCGAGCAGTGCTATAGATT+TGG | 0.401050 | 3.1:-16761449 | MS.gene79408:CDS |
| ATTGTGTATGATGGATCATT+TGG | 0.401464 | 3.1:-16761532 | MS.gene79408:CDS |
| CATTCATTACATGGTTCAAA+AGG | 0.407674 | 3.1:-16760573 | MS.gene79408:CDS |
| ATCTATAGCACTGCTCGCTT+CGG | 0.413945 | 3.1:+16761453 | None:intergenic |
| CTTGGATTTGTTGCACAAGT+TGG | 0.424158 | 3.1:+16760640 | None:intergenic |
| TTCACTTTCTATGTTGAGAA+TGG | 0.431758 | 3.1:+16760135 | None:intergenic |
| CTCCAAAATATCTCGGAGTT+CGG | 0.439692 | 3.1:-16761119 | MS.gene79408:CDS |
| TGCAGCTCAACACATTATAA+AGG | 0.458305 | 3.1:-16761962 | MS.gene79408:CDS |
| GAATCAAAAGACATATAATC+AGG | 0.459827 | 3.1:+16761568 | None:intergenic |
| GCTTAAATGTGTTGAAGATA+AGG | 0.460156 | 3.1:-16761821 | MS.gene79408:CDS |
| TGAGAAGTGGATTAAGTATA+CGG | 0.464454 | 3.1:-16760216 | MS.gene79408:CDS |
| CAGTTCTAGGAGAGAAGCCT+TGG | 0.468878 | 3.1:-16761338 | MS.gene79408:CDS |
| TGAATCGCAAGATAAAGAAA+TGG | 0.475005 | 3.1:-16761243 | MS.gene79408:CDS |
| TTTGTTTCTCCAAAATATCT+CGG | 0.480530 | 3.1:-16761126 | MS.gene79408:CDS |
| TTGTTTACTTGACATGTATG+AGG | 0.480736 | 3.1:-16761032 | MS.gene79408:CDS |
| TTTGGTGAGGCCGTAACAAT+GGG | 0.483386 | 3.1:-16761079 | MS.gene79408:CDS |
| GTTTGTTTCAAATTACCATC+AGG | 0.487592 | 3.1:-16761380 | MS.gene79408:CDS |
| CCGGTATAACTTCGGTAAGC+AGG | 0.491544 | 3.1:+16760260 | None:intergenic |
| GTCAAGGCTTGAGGATGAGT+TGG | 0.492679 | 3.1:-16761626 | MS.gene79408:CDS |
| ATCGTTCATACGTATCTAGT+TGG | 0.494827 | 3.1:-16761202 | MS.gene79408:CDS |
| GAAGTATACAAAACACAGAC+AGG | 0.498418 | 3.1:-16760347 | MS.gene79408:CDS |
| AGCAACATCAGTGTATAACT+TGG | 0.499600 | 3.1:+16760622 | None:intergenic |
| GAATGGAAATTTGAAGCATA+AGG | 0.507338 | 3.1:-16761689 | MS.gene79408:CDS |
| CCTGCTTACCGAAGTTATAC+CGG | 0.507813 | 3.1:-16760260 | MS.gene79408:CDS |
| TTGTTGCAAAGTTTGAGTTA+GGG | 0.513478 | 3.1:+16761726 | None:intergenic |
| CGTCTAACATTGATGAGAAG+TGG | 0.516919 | 3.1:-16760229 | MS.gene79408:CDS |
| AGAGTTGATATTGTGTATGA+TGG | 0.520793 | 3.1:-16761541 | MS.gene79408:CDS |
| GATGAATAACATTCATTACA+TGG | 0.527155 | 3.1:-16760582 | MS.gene79408:CDS |
| AATCTCCAAAGAAATTACAT+AGG | 0.528067 | 3.1:+16760534 | None:intergenic |
| TCATGACATATCTTGTAAGA+TGG | 0.530309 | 3.1:+16760825 | None:intergenic |
| ATCTCCAAAGAAATTACATA+GGG | 0.535733 | 3.1:+16760535 | None:intergenic |
| TGGATCATTTGGTTCAATTG+AGG | 0.538106 | 3.1:-16761521 | MS.gene79408:CDS |
| TTCTGGCTTCGCCAACATGT+TGG | 0.541758 | 3.1:-16760512 | MS.gene79408:CDS |
| GTGTTCAATCAATCAAAGAA+AGG | 0.555579 | 3.1:-16761872 | MS.gene79408:CDS |
| GAAGCTATGAGAAGGTGACT+TGG | 0.564885 | 3.1:-16760469 | MS.gene79408:CDS |
| AATGTTAGACGAGTTTCTAC+CGG | 0.566162 | 3.1:+16760241 | None:intergenic |
| AAGCAGATTCTTGGAGACTT+CGG | 0.569927 | 3.1:-16761163 | MS.gene79408:CDS |
| AGATATGGCAAAACTCCTGA+TGG | 0.585596 | 3.1:+16761365 | None:intergenic |
| AGTTGTTATGTCAAGGCTTG+AGG | 0.587807 | 3.1:-16761635 | MS.gene79408:CDS |
| CGTGTGTGCTCCCATTGTTA+CGG | 0.593909 | 3.1:+16761069 | None:intergenic |
| GATGCGTCGTGGAGCAGTGA+TGG | 0.601043 | 3.1:-16761484 | MS.gene79408:CDS |
| GCTGAAACATTCCAACATGT+TGG | 0.601281 | 3.1:+16760501 | None:intergenic |
| GAGGAAAGTTTATCGAATTG+CGG | 0.602785 | 3.1:-16760422 | MS.gene79408:CDS |
| AGTACTTTCTGTGTTTAGTG+AGG | 0.603239 | 3.1:-16760441 | MS.gene79408:CDS |
| AATGAGAAAGTACTCATCCA+AGG | 0.603868 | 3.1:+16761321 | None:intergenic |
| AGATGGTGAACACCTCCACC+AGG | 0.608901 | 3.1:+16760842 | None:intergenic |
| AAAATGTGCTTAAATTGGAG+TGG | 0.609715 | 3.1:-16761273 | MS.gene79408:CDS |
| TGAAACTTCGACTGATCTTG+CGG | 0.612837 | 3.1:-16760747 | MS.gene79408:CDS |
| AGTTTCTACCGGTATAACTT+CGG | 0.613307 | 3.1:+16760252 | None:intergenic |
| GCACAAGTTGGATTCTAGAG+TGG | 0.627118 | 3.1:+16760652 | None:intergenic |
| TTATGCTAGAAGCTATGAGA+AGG | 0.634466 | 3.1:-16760477 | MS.gene79408:CDS |
| ATATGTCATGAATTACATCA+AGG | 0.636314 | 3.1:-16760813 | MS.gene79408:CDS |
| TAGCACTGCTCGCTTCGGAT+CGG | 0.659065 | 3.1:+16761458 | None:intergenic |
| GCGTCGTGGAGCAGTGATGG+TGG | 0.670396 | 3.1:-16761481 | MS.gene79408:CDS |
| TATACAAAACACAGACAGGG+TGG | 0.686135 | 3.1:-16760343 | MS.gene79408:CDS |
| TTGTGAAGAAGATCAAGACA+TGG | 0.702934 | 3.1:-16761989 | MS.gene79408:CDS |
| AAGTATACAAAACACAGACA+GGG | 0.732452 | 3.1:-16760346 | MS.gene79408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTGAGTATTTAAAAATTGT+TGG | - | chr3.1:16760394-16760413 | MS.gene79408:CDS | 20.0% |
| !!! | AAGTAAACAAAACAGTTTTT+CGG | + | chr3.1:16761112-16761131 | None:intergenic | 20.0% |
| !!! | TGATCTACAATGTTATATTT+TGG | - | chr3.1:16761965-16761984 | MS.gene79408:CDS | 20.0% |
| ! | AAAACCCTATGTAATTTCTT+TGG | - | chr3.1:16761615-16761634 | MS.gene79408:CDS | 25.0% |
| ! | AATCTCCAAAGAAATTACAT+AGG | + | chr3.1:16761623-16761642 | None:intergenic | 25.0% |
| ! | ATACACAATATCAACTCTAT+TGG | + | chr3.1:16760611-16760630 | None:intergenic | 25.0% |
| ! | ATATGTCATGAATTACATCA+AGG | - | chr3.1:16761341-16761360 | MS.gene79408:CDS | 25.0% |
| ! | ATCTCCAAAGAAATTACATA+GGG | + | chr3.1:16761622-16761641 | None:intergenic | 25.0% |
| ! | GAATCAAAAGACATATAATC+AGG | + | chr3.1:16760589-16760608 | None:intergenic | 25.0% |
| ! | GATGAATAACATTCATTACA+TGG | - | chr3.1:16761572-16761591 | MS.gene79408:CDS | 25.0% |
| ! | TTTGATTGATTGAACACAAT+TGG | + | chr3.1:16760279-16760298 | None:intergenic | 25.0% |
| !! | AGTAAACAAAACAGTTTTTC+GGG | + | chr3.1:16761111-16761130 | None:intergenic | 25.0% |
| !! | CAAGATAAAGAAATGGATTT+GGG | - | chr3.1:16760918-16760937 | MS.gene79408:CDS | 25.0% |
| !! | TTTGTTTCTCCAAAATATCT+CGG | - | chr3.1:16761028-16761047 | MS.gene79408:CDS | 25.0% |
| !!! | AAAGATTTTAGTACTGCTTT+TGG | - | chr3.1:16761783-16761802 | MS.gene79408:CDS | 25.0% |
| AAAATGTGCTTAAATTGGAG+TGG | - | chr3.1:16760881-16760900 | MS.gene79408:CDS | 30.0% | |
| AAGTATACAAAACACAGACA+GGG | - | chr3.1:16761808-16761827 | MS.gene79408:CDS | 30.0% | |
| ATGAGTTTGGAGACAAATAT+TGG | - | chr3.1:16760358-16760377 | MS.gene79408:CDS | 30.0% | |
| CAAAAGTTTGATTCTGTGAA+TGG | - | chr3.1:16760448-16760467 | MS.gene79408:CDS | 30.0% | |
| CATCGAAAATGTGCTTAAAT+TGG | - | chr3.1:16760876-16760895 | MS.gene79408:CDS | 30.0% | |
| CATCGACAATTAGAAGATTA+AGG | + | chr3.1:16761389-16761408 | None:intergenic | 30.0% | |
| CATTCATTACATGGTTCAAA+AGG | - | chr3.1:16761581-16761600 | MS.gene79408:CDS | 30.0% | |
| CCAGGAAAACATTTATTTGA+TGG | + | chr3.1:16761297-16761316 | None:intergenic | 30.0% | |
| GCTTAAATGTGTTGAAGATA+AGG | - | chr3.1:16760333-16760352 | MS.gene79408:CDS | 30.0% | |
| GTGTTCAATCAATCAAAGAA+AGG | - | chr3.1:16760282-16760301 | MS.gene79408:CDS | 30.0% | |
| GTTTGTTTCAAATTACCATC+AGG | - | chr3.1:16760774-16760793 | MS.gene79408:CDS | 30.0% | |
| TCATGACATATCTTGTAAGA+TGG | + | chr3.1:16761332-16761351 | None:intergenic | 30.0% | |
| TGAAGATAAGGTAATGAGTT+TGG | - | chr3.1:16760345-16760364 | MS.gene79408:CDS | 30.0% | |
| TGAATCGCAAGATAAAGAAA+TGG | - | chr3.1:16760911-16760930 | MS.gene79408:CDS | 30.0% | |
| TTGTTTACTTGACATGTATG+AGG | - | chr3.1:16761122-16761141 | MS.gene79408:CDS | 30.0% | |
| ! | CCATCAAATAAATGTTTTCC+TGG | - | chr3.1:16761294-16761313 | MS.gene79408:CDS | 30.0% |
| ! | GAATGGAAATTTGAAGCATA+AGG | - | chr3.1:16760465-16760484 | MS.gene79408:CDS | 30.0% |
| ! | GCAAGATAAAGAAATGGATT+TGG | - | chr3.1:16760917-16760936 | MS.gene79408:CDS | 30.0% |
| ! | GTAATTTCTTTGGAGATTTC+TGG | - | chr3.1:16761625-16761644 | MS.gene79408:CDS | 30.0% |
| ! | GTATTGCGCCTTTTAAATTT+TGG | - | chr3.1:16761057-16761076 | MS.gene79408:CDS | 30.0% |
| ! | TCAAATAAATGTTTTCCTGG+TGG | - | chr3.1:16761297-16761316 | MS.gene79408:CDS | 30.0% |
| ! | TTGTTGCAAAGTTTGAGTTA+GGG | + | chr3.1:16760431-16760450 | None:intergenic | 30.0% |
| ! | TTTGTTGCAAAGTTTGAGTT+AGG | + | chr3.1:16760432-16760451 | None:intergenic | 30.0% |
| ! | TTTTGCAAGTTGTTATGTCA+AGG | - | chr3.1:16760512-16760531 | MS.gene79408:CDS | 30.0% |
| !! | AGAGTTGATATTGTGTATGA+TGG | - | chr3.1:16760613-16760632 | MS.gene79408:CDS | 30.0% |
| !! | ATTGTGTATGATGGATCATT+TGG | - | chr3.1:16760622-16760641 | MS.gene79408:CDS | 30.0% |
| !! | GAAGTTGATTCTTTTGTTAG+AGG | - | chr3.1:16761189-16761208 | MS.gene79408:CDS | 30.0% |
| !! | TGAGAAGTGGATTAAGTATA+CGG | - | chr3.1:16761938-16761957 | MS.gene79408:CDS | 30.0% |
| AATGTTAGACGAGTTTCTAC+CGG | + | chr3.1:16761916-16761935 | None:intergenic | 35.0% | |
| AGCAACATCAGTGTATAACT+TGG | + | chr3.1:16761535-16761554 | None:intergenic | 35.0% | |
| AGTACTTTCTGTGTTTAGTG+AGG | - | chr3.1:16761713-16761732 | MS.gene79408:CDS | 35.0% | |
| AGTTTCTACCGGTATAACTT+CGG | + | chr3.1:16761905-16761924 | None:intergenic | 35.0% | |
| ATCGTTCATACGTATCTAGT+TGG | - | chr3.1:16760952-16760971 | MS.gene79408:CDS | 35.0% | |
| CAATTGTGTAAGCAGATTCT+TGG | - | chr3.1:16760982-16761001 | MS.gene79408:CDS | 35.0% | |
| GAAGTATACAAAACACAGAC+AGG | - | chr3.1:16761807-16761826 | MS.gene79408:CDS | 35.0% | |
| GAGGAAAGTTTATCGAATTG+CGG | - | chr3.1:16761732-16761751 | MS.gene79408:CDS | 35.0% | |
| GGAGAAACAAAGCTGATAAA+TGG | + | chr3.1:16761019-16761038 | None:intergenic | 35.0% | |
| GTTCAATTGCTTGCAACTTA+AGG | - | chr3.1:16761469-16761488 | MS.gene79408:CDS | 35.0% | |
| TCCTAGAACTGATGAAGATA+TGG | + | chr3.1:16760807-16760826 | None:intergenic | 35.0% | |
| TCGCGAAGATCTACAAATAT+CGG | - | chr3.1:16761854-16761873 | MS.gene79408:CDS | 35.0% | |
| TGCAGCTCAACACATTATAA+AGG | - | chr3.1:16760192-16760211 | MS.gene79408:CDS | 35.0% | |
| TTATGCTAGAAGCTATGAGA+AGG | - | chr3.1:16761677-16761696 | MS.gene79408:CDS | 35.0% | |
| TTGTGAAGAAGATCAAGACA+TGG | - | chr3.1:16760165-16760184 | MS.gene79408:CDS | 35.0% | |
| ! | AATAAATGTTTTCCTGGTGG+AGG | - | chr3.1:16761300-16761319 | MS.gene79408:CDS | 35.0% |
| ! | ACTTGACATGTATGAGGTTT+TGG | - | chr3.1:16761128-16761147 | MS.gene79408:CDS | 35.0% |
| ! | ATCAAGGCACTTGTTGAATA+TGG | - | chr3.1:16761357-16761376 | MS.gene79408:CDS | 35.0% |
| ! | CACAAACTTCTAAGAAGCTT+TGG | - | chr3.1:16761219-16761238 | MS.gene79408:CDS | 35.0% |
| ! | GAACTTGTTCAAAGAGCTAA+TGG | - | chr3.1:16760487-16760506 | MS.gene79408:CDS | 35.0% |
| ! | TGAGAATGGTGCAAAGATTT+TGG | + | chr3.1:16762008-16762027 | None:intergenic | 35.0% |
| ! | TGAGTTGAGAAAAACTCTCT+TGG | - | chr3.1:16760243-16760262 | MS.gene79408:CDS | 35.0% |
| ! | TGGATCATTTGGTTCAATTG+AGG | - | chr3.1:16760633-16760652 | MS.gene79408:CDS | 35.0% |
| !! | AATGAGAAAGTACTCATCCA+AGG | + | chr3.1:16760836-16760855 | None:intergenic | 35.0% |
| AAAAAATCAACGATGCGTCG+TGG | - | chr3.1:16760659-16760678 | MS.gene79408:CDS | 40.0% | |
| AAGCAGATTCTTGGAGACTT+CGG | - | chr3.1:16760991-16761010 | MS.gene79408:CDS | 40.0% | |
| AGATATGGCAAAACTCCTGA+TGG | + | chr3.1:16760792-16760811 | None:intergenic | 40.0% | |
| AGTTGTTATGTCAAGGCTTG+AGG | - | chr3.1:16760519-16760538 | MS.gene79408:CDS | 40.0% | |
| CGGCCTCACCAAAATTTAAA+AGG | + | chr3.1:16761068-16761087 | None:intergenic | 40.0% | |
| CGTCTAACATTGATGAGAAG+TGG | - | chr3.1:16761925-16761944 | MS.gene79408:CDS | 40.0% | |
| CTCCAAAATATCTCGGAGTT+CGG | - | chr3.1:16761035-16761054 | MS.gene79408:CDS | 40.0% | |
| GCCATATCTTCATCAGTTCT+AGG | - | chr3.1:16760803-16760822 | MS.gene79408:CDS | 40.0% | |
| GCTGAAACATTCCAACATGT+TGG | + | chr3.1:16761656-16761675 | None:intergenic | 40.0% | |
| TATACAAAACACAGACAGGG+TGG | - | chr3.1:16761811-16761830 | MS.gene79408:CDS | 40.0% | |
| TCTTCACAAGCTGAGATCAT+AGG | + | chr3.1:16760154-16760173 | None:intergenic | 40.0% | |
| TCTTCGCGAAGTTCTTTATC+AGG | + | chr3.1:16761843-16761862 | None:intergenic | 40.0% | |
| TGAAACTTCGACTGATCTTG+CGG | - | chr3.1:16761407-16761426 | MS.gene79408:CDS | 40.0% | |
| ! | TACCGAACTCCGAGATATTT+TGG | + | chr3.1:16761040-16761059 | None:intergenic | 40.0% |
| !! | CTTGGATTTGTTGCACAAGT+TGG | + | chr3.1:16761517-16761536 | None:intergenic | 40.0% |
| !! | GCGCCTTTTAAATTTTGGTG+AGG | - | chr3.1:16761062-16761081 | MS.gene79408:CDS | 40.0% |
| AGCGAGCAGTGCTATAGATT+TGG | - | chr3.1:16760705-16760724 | MS.gene79408:CDS | 45.0% | |
| ATCTATAGCACTGCTCGCTT+CGG | + | chr3.1:16760704-16760723 | None:intergenic | 45.0% | |
| CCTGCTTACCGAAGTTATAC+CGG | - | chr3.1:16761894-16761913 | MS.gene79408:CDS | 45.0% | |
| GAAGCTATGAGAAGGTGACT+TGG | - | chr3.1:16761685-16761704 | MS.gene79408:CDS | 45.0% | |
| TTTGGTGAGGCCGTAACAAT+GGG | - | chr3.1:16761075-16761094 | MS.gene79408:CDS | 45.0% | |
| ! | GCACAAGTTGGATTCTAGAG+TGG | + | chr3.1:16761505-16761524 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGCCGTAACAA+TGG | - | chr3.1:16761074-16761093 | MS.gene79408:CDS | 45.0% |
| !!! | GGTTTTGGAACTTCTAGCAG+TGG | - | chr3.1:16761143-16761162 | MS.gene79408:CDS | 45.0% |
| CCGGTATAACTTCGGTAAGC+AGG | + | chr3.1:16761897-16761916 | None:intergenic | 50.0% | |
| CGTGTGTGCTCCCATTGTTA+CGG | + | chr3.1:16761088-16761107 | None:intergenic | 50.0% | |
| GTCAAGGCTTGAGGATGAGT+TGG | - | chr3.1:16760528-16760547 | MS.gene79408:CDS | 50.0% | |
| !! | CAGTTCTAGGAGAGAAGCCT+TGG | - | chr3.1:16760816-16760835 | MS.gene79408:CDS | 50.0% |
| !! | TTCTGGCTTCGCCAACATGT+TGG | - | chr3.1:16761642-16761661 | MS.gene79408:CDS | 50.0% |
| AGATGGTGAACACCTCCACC+AGG | + | chr3.1:16761315-16761334 | None:intergenic | 55.0% | |
| TAGCACTGCTCGCTTCGGAT+CGG | + | chr3.1:16760699-16760718 | None:intergenic | 55.0% | |
| GATGCGTCGTGGAGCAGTGA+TGG | - | chr3.1:16760670-16760689 | MS.gene79408:CDS | 60.0% | |
| GCGTCGTGGAGCAGTGATGG+TGG | - | chr3.1:16760673-16760692 | MS.gene79408:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 16760136 | 16762040 | 16760136 | ID=MS.gene79408 |
| chr3.1 | mRNA | 16760136 | 16762040 | 16760136 | ID=MS.gene79408.t1;Parent=MS.gene79408 |
| chr3.1 | exon | 16760136 | 16762040 | 16760136 | ID=MS.gene79408.t1.exon1;Parent=MS.gene79408.t1 |
| chr3.1 | CDS | 16760136 | 16762040 | 16760136 | ID=cds.MS.gene79408.t1;Parent=MS.gene79408.t1 |
| Gene Sequence |
| Protein sequence |
