AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79585

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79585.t1 MTR_3g118390 57.895 247 90 4 161 404 129 364 1.15e-94 289
MS.gene79585.t1 MTR_8g074350 49.393 247 110 5 161 404 83 317 5.74e-78 244
MS.gene79585.t1 MTR_8g074330 48.133 241 110 5 167 404 89 317 5.54e-75 236
MS.gene79585.t1 MTR_8g074335 44.215 242 107 5 167 405 91 307 1.10e-63 207
MS.gene79585.t1 MTR_7g110780 40.316 253 125 8 161 404 39 274 1.12e-57 190
MS.gene79585.t1 MTR_2g034680 33.761 234 139 5 167 393 65 289 7.55e-37 137
MS.gene79585.t1 MTR_2g099465 32.422 256 128 8 148 400 41 254 2.78e-36 133
MS.gene79585.t1 MTR_2g099470 33.712 264 127 10 140 400 64 282 3.45e-35 131
MS.gene79585.t1 MTR_1g105535 31.837 245 149 7 156 393 62 295 5.67e-34 129
MS.gene79585.t1 MTR_7g021640 31.197 234 144 6 167 393 69 292 1.06e-31 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79585.t1 AT3G12500 52.400 250 101 5 161 405 89 325 2.88e-86 266
MS.gene79585.t1 AT4G01700 42.041 245 121 7 167 404 47 277 3.41e-63 205
MS.gene79585.t1 AT1G02360 40.149 269 140 6 143 404 15 269 8.74e-62 201
MS.gene79585.t1 AT1G02360 40.149 269 140 6 143 404 67 321 4.09e-61 201
MS.gene79585.t1 AT1G02360 40.149 269 140 6 143 404 61 315 4.18e-61 201
MS.gene79585.t1 AT2G43590 32.129 249 119 9 146 392 56 256 1.41e-36 134
MS.gene79585.t1 AT3G54420 33.203 256 127 8 147 400 60 273 2.66e-35 131
MS.gene79585.t1 AT1G05850 31.356 236 145 6 162 390 64 289 1.32e-34 131
MS.gene79585.t1 AT1G05850 31.356 236 145 6 162 390 64 289 1.32e-34 131
MS.gene79585.t1 AT3G16920 31.197 234 145 5 167 393 77 301 7.92e-34 129
MS.gene79585.t1 AT2G43570 34.025 241 103 9 167 400 86 277 9.75e-34 127
MS.gene79585.t1 AT3G16920 31.197 234 145 5 167 393 101 325 3.09e-33 128
MS.gene79585.t1 AT2G43580 34.756 164 90 5 151 312 62 210 1.55e-31 121
MS.gene79585.t1 AT2G43610 39.227 181 92 6 133 311 61 225 5.54e-31 120
MS.gene79585.t1 AT2G43620 37.838 185 96 5 128 311 61 227 5.61e-31 120
MS.gene79585.t1 AT1G56680 36.872 179 95 7 137 314 64 225 4.57e-27 109
MS.gene79585.t1 AT1G56680 36.872 179 95 7 137 314 87 248 7.98e-27 109
MS.gene79585.t1 AT2G43600 39.355 155 74 7 159 311 102 238 4.20e-23 99.0
MS.gene79585.t1 AT2G43600 39.355 155 74 7 159 311 81 217 6.56e-23 97.8
MS.gene79585.t1 AT3G47540 24.473 237 115 11 167 400 39 214 5.46e-14 71.2

Find 143 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGAGTGCTTTATGGTTT+TGG 0.185971 7.3:-87495997 MS.gene79585:CDS
GCACTCTTGAAGGATATAAT+TGG 0.206068 7.3:+87496010 None:intergenic
TATCCTTCAAGAGTGCTTTA+TGG 0.208128 7.3:-87496003 MS.gene79585:CDS
AATCTATGTTTCCAGTTATC+TGG 0.221981 7.3:+87496098 None:intergenic
GGAGAAGGAGGAGGTGGAGG+AGG 0.243122 7.3:+87496559 None:intergenic
GAAGGAGGAGGTGGAGGAGG+GGG 0.251029 7.3:+87496562 None:intergenic
AGAAGGAGGAGGTGGAGGAG+GGG 0.270244 7.3:+87496561 None:intergenic
GGAGGAGAAGGAGGAGGTGG+AGG 0.299105 7.3:+87496556 None:intergenic
GAAGGAGGAGGTGGAGAAGG+GGG 0.299752 7.3:+87496652 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.300000 7.3:+87496514 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.300000 7.3:+87496604 None:intergenic
GAAGGAGGTGGAGGAGAAGG+GGG 0.301420 7.3:+87496517 None:intergenic
GAAGGAGGTGGAGGAGAAGG+GGG 0.301420 7.3:+87496607 None:intergenic
AGAAGGAGGAGGTGGAGAAG+GGG 0.311010 7.3:+87496651 None:intergenic
AGAAGGAGGTGGAGGAGAAG+GGG 0.317057 7.3:+87496516 None:intergenic
AGAAGGAGGTGGAGGAGAAG+GGG 0.317057 7.3:+87496606 None:intergenic
ACCGAACTTGGGGAAGGTTT+TGG 0.324729 7.3:+87496327 None:intergenic
GGAGAAGGAGAAGGAGGAGG+GGG 0.325667 7.3:+87496493 None:intergenic
GGAGAAGGAGAAGGAGGAGG+GGG 0.325667 7.3:+87496583 None:intergenic
GGAGGAGGAGAAGGAGAAGG+AGG 0.327660 7.3:+87496673 None:intergenic
GGTGGAGGAGAAGGAGGAGG+TGG 0.331582 7.3:+87496553 None:intergenic
GGAGGTGGAGAAGGAGGTGG+AGG 0.333161 7.3:+87496538 None:intergenic
GGAGGTGGAGAAGGAGGTGG+AGG 0.333161 7.3:+87496628 None:intergenic
GAGAAGGAGGTGGAGGAGAA+GGG 0.335710 7.3:+87496515 None:intergenic
GAGAAGGAGGTGGAGGAGAA+GGG 0.335710 7.3:+87496605 None:intergenic
GAAGGAGGTGGAGGAGAAGG+GGG 0.340830 7.3:+87496703 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.343175 7.3:+87496700 None:intergenic
AGAAGGAGGTGGAGGAGAAG+GGG 0.353336 7.3:+87496702 None:intergenic
GGGGAGAAGGAGAAGGAGGA+GGG 0.355021 7.3:+87496491 None:intergenic
GGGGAGAAGGAGAAGGAGGA+GGG 0.355021 7.3:+87496581 None:intergenic
ATGAAGTTATGGCTGGAATA+TGG 0.358475 7.3:-87495928 MS.gene79585:CDS
GGAGAAGGAGGAGGTGGAGA+AGG 0.359221 7.3:+87496649 None:intergenic
GGGAGAAGGAGAAGGAGGAG+GGG 0.360042 7.3:+87496492 None:intergenic
GGGAGAAGGAGAAGGAGGAG+GGG 0.360042 7.3:+87496582 None:intergenic
GGAGAAGGAGGAGGTGGAGA+AGG 0.361976 7.3:+87496685 None:intergenic
GGAGAAGGAGAAGGAGGAGG+TGG 0.367053 7.3:+87496679 None:intergenic
GGTGCTTGGCGGGTCGAGAT+AGG 0.370143 7.3:-87496843 MS.gene79585:CDS
GAGAAGGAGGAGGTGGAGGA+GGG 0.374457 7.3:+87496560 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.375084 7.3:+87496544 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.375084 7.3:+87496634 None:intergenic
GGAGGAGAAGGAGAAGGAGG+AGG 0.378273 7.3:+87496676 None:intergenic
AGTACCTACATTACCGAACT+TGG 0.383717 7.3:+87496315 None:intergenic
ATAGTACTACTAATTATAAT+AGG 0.386077 7.3:-87496877 MS.gene79585:CDS
AGGGGTCCATTCCAGATAAC+TGG 0.388340 7.3:-87496109 MS.gene79585:CDS
GAGAAGGAGGAGGTGGAGAA+GGG 0.392207 7.3:+87496650 None:intergenic
GGTGGAGGAGAAGGAGGAGG+TGG 0.395791 7.3:+87496643 None:intergenic
TACTACAAATTCAAAGAAAT+CGG 0.399460 7.3:-87496296 MS.gene79585:CDS
GAGAAGGAGGTGGAGGAGAA+GGG 0.399675 7.3:+87496701 None:intergenic
GGGTCAGTGGCAACAAGGTC+TGG 0.410481 7.3:+87496031 None:intergenic
GGAGGTGGAGAAGGAGGTGG+AGG 0.414765 7.3:+87496694 None:intergenic
AAACCATAAAGCACTCTTGA+AGG 0.417998 7.3:+87496000 None:intergenic
ATATTCCAGCCATAACTTCA+TGG 0.424648 7.3:+87495930 None:intergenic
GAAGGAGGTGGAGGAGAAGG+AGG 0.426671 7.3:+87496547 None:intergenic
GAAGGAGGTGGAGGAGAAGG+AGG 0.426671 7.3:+87496637 None:intergenic
GGAAGATGTGGACGTGCAAT+AGG 0.428014 7.3:-87496073 MS.gene79585:CDS
GGAGGAGGTGGAGAAGGAGG+TGG 0.429509 7.3:+87496691 None:intergenic
AACTGAAGGACCTTACGATT+GGG 0.431682 7.3:-87496224 MS.gene79585:CDS
GAAGGAGGAGGTGGAGAAGG+AGG 0.433472 7.3:+87496688 None:intergenic
GCCAAAACCTTCCCCAAGTT+CGG 0.444099 7.3:-87496328 MS.gene79585:CDS
CAGAGAAGGTATGGAGGATA+CGG 0.447633 7.3:-87495881 MS.gene79585:CDS
TCTGAATTCCCATGTGCTCC+CGG 0.451292 7.3:-87496148 MS.gene79585:CDS
TCCTCCACAGGAGGAGGAGG+GGG 0.456429 7.3:+87496454 None:intergenic
TACTCCTCCACAGGAGGAGG+AGG 0.457097 7.3:+87496451 None:intergenic
CACTCTTGAAGGATATAATT+GGG 0.461047 7.3:+87496011 None:intergenic
GACATACTACTTGTTGCATA+TGG 0.464190 7.3:-87495746 MS.gene79585:CDS
GGAGGTGGAGGAGAAGGAGG+AGG 0.467733 7.3:+87496550 None:intergenic
GGAGGTGGAGGAGAAGGAGG+AGG 0.467733 7.3:+87496640 None:intergenic
ATGTTTCCAGTTATCTGGAA+TGG 0.476826 7.3:+87496103 None:intergenic
GCCGGCCTGCCATGAAGTTA+TGG 0.478726 7.3:-87495939 MS.gene79585:CDS
ATAACTGGAAACATAGATTA+CGG 0.482252 7.3:-87496094 MS.gene79585:CDS
CAGTAGTCCCTGGTCGGATA+CGG 0.482503 7.3:+87496181 None:intergenic
GTGCTTGGCGGGTCGAGATA+GGG 0.484081 7.3:-87496842 MS.gene79585:CDS
CCAATCCGATCCATCTCGCT+TGG 0.487282 7.3:+87495788 None:intergenic
CTAATTATAATAGGATCTAC+AGG 0.488991 7.3:-87496868 MS.gene79585:CDS
ATCTACAGGATGGTGCTTGG+CGG 0.490040 7.3:-87496854 MS.gene79585:CDS
TATTGCTTCCCGGGAGCACA+TGG 0.495422 7.3:+87496139 None:intergenic
GCCTGCCATGAAGTTATGGC+TGG 0.503377 7.3:-87495935 MS.gene79585:CDS
GATCAACTTCAGAGAAGGTA+TGG 0.504828 7.3:-87495890 MS.gene79585:CDS
CAACTGAAGGACCTTACGAT+TGG 0.508041 7.3:-87496225 MS.gene79585:CDS
CCTACCGTAGTATTGCTTCC+CGG 0.511349 7.3:+87496129 None:intergenic
GGAGTACCTCATCTCGGTAA+AGG 0.513508 7.3:-87496434 MS.gene79585:CDS
GGAAACTATGTTGAATGCTA+TGG 0.514331 7.3:-87495725 MS.gene79585:CDS
AGTAGTACTATTACTACTGT+CGG 0.516707 7.3:+87496889 None:intergenic
TCTACAGGATGGTGCTTGGC+GGG 0.521803 7.3:-87496853 MS.gene79585:CDS
CTCCTCCACAGGAGGAGGAG+GGG 0.527159 7.3:+87496453 None:intergenic
TCCAGCCATAACTTCATGGC+AGG 0.528982 7.3:+87495934 None:intergenic
GCCATAACTTCATGGCAGGC+CGG 0.536400 7.3:+87495938 None:intergenic
GTACCTACATTACCGAACTT+GGG 0.537559 7.3:+87496316 None:intergenic
AGGATCTACAGGATGGTGCT+TGG 0.538586 7.3:-87496857 MS.gene79585:CDS
CTGAATTCCCATGTGCTCCC+GGG 0.540245 7.3:-87496147 MS.gene79585:CDS
TGAAGGAACCGTATCCGACC+AGG 0.540571 7.3:-87496189 MS.gene79585:CDS
GTGGATTATGCTGCAGTGCA+TGG 0.544281 7.3:-87496813 MS.gene79585:CDS
GCTTGGTTCGCAGTAGTCCC+TGG 0.544396 7.3:+87496171 None:intergenic
TATACGTCGGATGTCTGAAT+CGG 0.546764 7.3:+87495965 None:intergenic
CTACCGTAGTATTGCTTCCC+GGG 0.547334 7.3:+87496130 None:intergenic
AGGTACTCCTCCACAGGAGG+AGG 0.550430 7.3:+87496448 None:intergenic
CCAAGCGAGATGGATCGGAT+TGG 0.551091 7.3:-87495788 MS.gene79585:CDS
GTAGTACTATTACTACTGTC+GGG 0.560539 7.3:+87496890 None:intergenic
TTGGGGATATTGCTTTGTGA+AGG 0.560715 7.3:-87496206 MS.gene79585:CDS
GCACATGGGAATTCAGAGCT+TGG 0.561314 7.3:+87496154 None:intergenic
CCGGGAAGCAATACTACGGT+AGG 0.561794 7.3:-87496129 MS.gene79585:CDS
TGACTCCAAGCGAGATGGAT+CGG 0.563979 7.3:-87495793 MS.gene79585:CDS
ACTCCTCCACAGGAGGAGGA+GGG 0.568941 7.3:+87496452 None:intergenic
TACATTACCGAACTTGGGGA+AGG 0.581411 7.3:+87496321 None:intergenic
AGAGAAGGTATGGAGGATAC+GGG 0.583219 7.3:-87495880 MS.gene79585:CDS
GACATCCGACGTATATATGC+CGG 0.585214 7.3:-87495957 MS.gene79585:CDS
AAGCAATATCCCCAATCGTA+AGG 0.585697 7.3:+87496214 None:intergenic
CGGGAAGCAATACTACGGTA+GGG 0.588518 7.3:-87496128 MS.gene79585:CDS
GAAGGATATAATTGGGTCAG+TGG 0.591004 7.3:+87496018 None:intergenic
GTTCATGACTCCAAGCGAGA+TGG 0.591557 7.3:-87495798 MS.gene79585:CDS
TGGATTATGCTGCAGTGCAT+GGG 0.592592 7.3:-87496812 MS.gene79585:CDS
CTTGGCGGGTCGAGATAGGG+AGG 0.596615 7.3:-87496839 MS.gene79585:CDS
ACTGAAGGACCTTACGATTG+GGG 0.597185 7.3:-87496223 MS.gene79585:CDS
AACATAGATTACGGAAGATG+TGG 0.601170 7.3:-87496085 MS.gene79585:CDS
TTCCCCAAGTTCGGTAATGT+AGG 0.601264 7.3:-87496319 MS.gene79585:CDS
ATACGGGATGACAACTTATG+TGG 0.605274 7.3:-87495864 MS.gene79585:CDS
AAAACTGGAAATGTGGAGGT+GGG 0.608412 7.3:-87495820 MS.gene79585:CDS
TGAAATCCTTTACCGAGATG+AGG 0.610470 7.3:+87496428 None:intergenic
ATGCTGATCAACTTCAGAGA+AGG 0.611620 7.3:-87495895 MS.gene79585:CDS
GGTTCGCAGTAGTCCCTGGT+CGG 0.614886 7.3:+87496175 None:intergenic
TACCTACATTACCGAACTTG+GGG 0.615827 7.3:+87496317 None:intergenic
CACGATGATGATCTGTGTGA+GGG 0.618288 7.3:-87496388 MS.gene79585:CDS
TGAAGTTGATCAGCATGAGA+AGG 0.618426 7.3:+87495902 None:intergenic
GAGATGAGGTACTCCTCCAC+AGG 0.622328 7.3:+87496442 None:intergenic
ACGTCGGATGTCTGAATCGG+AGG 0.626982 7.3:+87495968 None:intergenic
GGTCGAGATAGGGAGGAATG+TGG 0.628829 7.3:-87496832 MS.gene79585:CDS
TGTGGAGGAGTACCTCATCT+CGG 0.630847 7.3:-87496440 MS.gene79585:CDS
ACAAGTGGTGGATCAACTGA+AGG 0.633335 7.3:-87496238 MS.gene79585:CDS
GATGATCTGTGTGAGGGGAA+AGG 0.633834 7.3:-87496382 MS.gene79585:CDS
CAAAGTTCTCACGAAACAAG+TGG 0.637024 7.3:-87496253 MS.gene79585:CDS
TAATTGGGTCAGTGGCAACA+AGG 0.640917 7.3:+87496026 None:intergenic
GGGAAGCAATACTACGGTAG+GGG 0.642706 7.3:-87496127 MS.gene79585:CDS
ATGAGGTACTCCTCCACAGG+AGG 0.644606 7.3:+87496445 None:intergenic
AGATCAATTGAAAGCCATTG+CGG 0.647787 7.3:-87496781 MS.gene79585:CDS
TTATAATAGGATCTACAGGA+TGG 0.658343 7.3:-87496864 MS.gene79585:CDS
CAACTTCAGAGAAGGTATGG+AGG 0.659279 7.3:-87495887 MS.gene79585:CDS
ATTGCTTCCCGGGAGCACAT+GGG 0.672296 7.3:+87496140 None:intergenic
AGTTCTCACGAAACAAGTGG+TGG 0.683018 7.3:-87496250 MS.gene79585:CDS
GCTCCCGGGAAGCAATACTA+CGG 0.687521 7.3:-87496133 MS.gene79585:CDS
GAAGGAACCGTATCCGACCA+GGG 0.689660 7.3:-87496188 MS.gene79585:CDS
TCACGATGATGATCTGTGTG+AGG 0.695121 7.3:-87496389 MS.gene79585:CDS
ACGATGATGATCTGTGTGAG+GGG 0.740758 7.3:-87496387 MS.gene79585:CDS
GCAGGCCGGCATATATACGT+CGG 0.755872 7.3:+87495952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTACTACTAATTATAAT+AGG - chr7.3:87495721-87495740 MS.gene79585:CDS 15.0%
!! TACTACAAATTCAAAGAAAT+CGG - chr7.3:87496302-87496321 MS.gene79585:CDS 20.0%
!!! ATTTCCAGTTTTTGAATTTT+TGG + chr7.3:87496770-87496789 None:intergenic 20.0%
!!! TTTCCAGTTTTTGAATTTTT+GGG + chr7.3:87496769-87496788 None:intergenic 20.0%
! AAATTCAAAAACTGGAAATG+TGG - chr7.3:87496771-87496790 MS.gene79585:CDS 25.0%
! ATAACTGGAAACATAGATTA+CGG - chr7.3:87496504-87496523 MS.gene79585:CDS 25.0%
! CTAATTATAATAGGATCTAC+AGG - chr7.3:87495730-87495749 MS.gene79585:CDS 25.0%
AATCTATGTTTCCAGTTATC+TGG + chr7.3:87496503-87496522 None:intergenic 30.0%
AGTAGTACTATTACTACTGT+CGG + chr7.3:87495712-87495731 None:intergenic 30.0%
CACTCTTGAAGGATATAATT+GGG + chr7.3:87496590-87496609 None:intergenic 30.0%
TTATAATAGGATCTACAGGA+TGG - chr7.3:87495734-87495753 MS.gene79585:CDS 30.0%
AACATAGATTACGGAAGATG+TGG - chr7.3:87496513-87496532 MS.gene79585:CDS 35.0%
AGATCAATTGAAAGCCATTG+CGG - chr7.3:87495817-87495836 MS.gene79585:CDS 35.0%
ATATTCCAGCCATAACTTCA+TGG + chr7.3:87496671-87496690 None:intergenic 35.0%
ATGAAGTTATGGCTGGAATA+TGG - chr7.3:87496670-87496689 MS.gene79585:CDS 35.0%
ATGTTTCCAGTTATCTGGAA+TGG + chr7.3:87496498-87496517 None:intergenic 35.0%
CCTCCCAAAAATTCAAAAAC+TGG - chr7.3:87496763-87496782 MS.gene79585:CDS 35.0%
GCACTCTTGAAGGATATAAT+TGG + chr7.3:87496591-87496610 None:intergenic 35.0%
GGAAACTATGTTGAATGCTA+TGG - chr7.3:87496873-87496892 MS.gene79585:CDS 35.0%
GTAGTACTATTACTACTGTC+GGG + chr7.3:87495711-87495730 None:intergenic 35.0%
TTCAAAAACTGGAAATGTGG+AGG - chr7.3:87496774-87496793 MS.gene79585:CDS 35.0%
! AAACCATAAAGCACTCTTGA+AGG + chr7.3:87496601-87496620 None:intergenic 35.0%
! GACATACTACTTGTTGCATA+TGG - chr7.3:87496852-87496871 MS.gene79585:CDS 35.0%
!! CCAGTTTTTGAATTTTTGGG+AGG + chr7.3:87496766-87496785 None:intergenic 35.0%
!! TATCCTTCAAGAGTGCTTTA+TGG - chr7.3:87496595-87496614 MS.gene79585:CDS 35.0%
!!! TCAAGAGTGCTTTATGGTTT+TGG - chr7.3:87496601-87496620 MS.gene79585:CDS 35.0%
AAAAACTGGAAATGTGGAGG+TGG - chr7.3:87496777-87496796 MS.gene79585:CDS 40.0%
AAAACTGGAAATGTGGAGGT+GGG - chr7.3:87496778-87496797 MS.gene79585:CDS 40.0%
AACTGAAGGACCTTACGATT+GGG - chr7.3:87496374-87496393 MS.gene79585:CDS 40.0%
AAGCAATATCCCCAATCGTA+AGG + chr7.3:87496387-87496406 None:intergenic 40.0%
AGTACCTACATTACCGAACT+TGG + chr7.3:87496286-87496305 None:intergenic 40.0%
ATACGGGATGACAACTTATG+TGG - chr7.3:87496734-87496753 MS.gene79585:CDS 40.0%
ATGCTGATCAACTTCAGAGA+AGG - chr7.3:87496703-87496722 MS.gene79585:CDS 40.0%
CAAAGTTCTCACGAAACAAG+TGG - chr7.3:87496345-87496364 MS.gene79585:CDS 40.0%
GAAGGATATAATTGGGTCAG+TGG + chr7.3:87496583-87496602 None:intergenic 40.0%
GATCAACTTCAGAGAAGGTA+TGG - chr7.3:87496708-87496727 MS.gene79585:CDS 40.0%
GTACCTACATTACCGAACTT+GGG + chr7.3:87496285-87496304 None:intergenic 40.0%
TACCTACATTACCGAACTTG+GGG + chr7.3:87496284-87496303 None:intergenic 40.0%
TATACGTCGGATGTCTGAAT+CGG + chr7.3:87496636-87496655 None:intergenic 40.0%
TGAAATCCTTTACCGAGATG+AGG + chr7.3:87496173-87496192 None:intergenic 40.0%
TTGGGGATATTGCTTTGTGA+AGG - chr7.3:87496392-87496411 MS.gene79585:CDS 40.0%
! TGAAGTTGATCAGCATGAGA+AGG + chr7.3:87496699-87496718 None:intergenic 40.0%
ACGATGATGATCTGTGTGAG+GGG - chr7.3:87496211-87496230 MS.gene79585:CDS 45.0%
ACTGAAGGACCTTACGATTG+GGG - chr7.3:87496375-87496394 MS.gene79585:CDS 45.0%
AGTTCTCACGAAACAAGTGG+TGG - chr7.3:87496348-87496367 MS.gene79585:CDS 45.0%
CAACTGAAGGACCTTACGAT+TGG - chr7.3:87496373-87496392 MS.gene79585:CDS 45.0%
CACGATGATGATCTGTGTGA+GGG - chr7.3:87496210-87496229 MS.gene79585:CDS 45.0%
GACATCCGACGTATATATGC+CGG - chr7.3:87496641-87496660 MS.gene79585:CDS 45.0%
TAATTGGGTCAGTGGCAACA+AGG + chr7.3:87496575-87496594 None:intergenic 45.0%
TACATTACCGAACTTGGGGA+AGG + chr7.3:87496280-87496299 None:intergenic 45.0%
TCACGATGATGATCTGTGTG+AGG - chr7.3:87496209-87496228 MS.gene79585:CDS 45.0%
TGGATTATGCTGCAGTGCAT+GGG - chr7.3:87495786-87495805 MS.gene79585:CDS 45.0%
TTCCCCAAGTTCGGTAATGT+AGG - chr7.3:87496279-87496298 MS.gene79585:CDS 45.0%
! AGAGAAGGTATGGAGGATAC+GGG - chr7.3:87496718-87496737 MS.gene79585:CDS 45.0%
! CAACTTCAGAGAAGGTATGG+AGG - chr7.3:87496711-87496730 MS.gene79585:CDS 45.0%
! CAGAGAAGGTATGGAGGATA+CGG - chr7.3:87496717-87496736 MS.gene79585:CDS 45.0%
!! ACAAGTGGTGGATCAACTGA+AGG - chr7.3:87496360-87496379 MS.gene79585:CDS 45.0%
AGGATCTACAGGATGGTGCT+TGG - chr7.3:87495741-87495760 MS.gene79585:CDS 50.0%
AGGGGTCCATTCCAGATAAC+TGG - chr7.3:87496489-87496508 MS.gene79585:CDS 50.0%
ATCTACAGGATGGTGCTTGG+CGG - chr7.3:87495744-87495763 MS.gene79585:CDS 50.0%
CCTACCGTAGTATTGCTTCC+CGG + chr7.3:87496472-87496491 None:intergenic 50.0%
CGGGAAGCAATACTACGGTA+GGG - chr7.3:87496470-87496489 MS.gene79585:CDS 50.0%
CTACCGTAGTATTGCTTCCC+GGG + chr7.3:87496471-87496490 None:intergenic 50.0%
GATGATCTGTGTGAGGGGAA+AGG - chr7.3:87496216-87496235 MS.gene79585:CDS 50.0%
GCACATGGGAATTCAGAGCT+TGG + chr7.3:87496447-87496466 None:intergenic 50.0%
GCCAAAACCTTCCCCAAGTT+CGG - chr7.3:87496270-87496289 MS.gene79585:CDS 50.0%
GGAAGATGTGGACGTGCAAT+AGG - chr7.3:87496525-87496544 MS.gene79585:CDS 50.0%
GGGAAGCAATACTACGGTAG+GGG - chr7.3:87496471-87496490 MS.gene79585:CDS 50.0%
GTTCATGACTCCAAGCGAGA+TGG - chr7.3:87496800-87496819 MS.gene79585:CDS 50.0%
TCCAGCCATAACTTCATGGC+AGG + chr7.3:87496667-87496686 None:intergenic 50.0%
TCTGAATTCCCATGTGCTCC+CGG - chr7.3:87496450-87496469 MS.gene79585:CDS 50.0%
TGACTCCAAGCGAGATGGAT+CGG - chr7.3:87496805-87496824 MS.gene79585:CDS 50.0%
! ACCGAACTTGGGGAAGGTTT+TGG + chr7.3:87496274-87496293 None:intergenic 50.0%
! GGAGTACCTCATCTCGGTAA+AGG - chr7.3:87496164-87496183 MS.gene79585:CDS 50.0%
! GTGGATTATGCTGCAGTGCA+TGG - chr7.3:87495785-87495804 MS.gene79585:CDS 50.0%
!! TGTGGAGGAGTACCTCATCT+CGG - chr7.3:87496158-87496177 MS.gene79585:CDS 50.0%
ACGTCGGATGTCTGAATCGG+AGG + chr7.3:87496633-87496652 None:intergenic 55.0%
AGAAGGAGGAGGTGGAGAAG+GGG + chr7.3:87495914-87495933 None:intergenic 55.0%
AGAAGGAGGTGGAGGAGAAG+GGG + chr7.3:87495899-87495918 None:intergenic 55.0%
CAGTAGTCCCTGGTCGGATA+CGG + chr7.3:87496420-87496439 None:intergenic 55.0%
CCAAGCGAGATGGATCGGAT+TGG - chr7.3:87496810-87496829 MS.gene79585:CDS 55.0%
CCAATCCGATCCATCTCGCT+TGG + chr7.3:87496813-87496832 None:intergenic 55.0%
CCGGGAAGCAATACTACGGT+AGG - chr7.3:87496469-87496488 MS.gene79585:CDS 55.0%
CTGAATTCCCATGTGCTCCC+GGG - chr7.3:87496451-87496470 MS.gene79585:CDS 55.0%
GAAGGAACCGTATCCGACCA+GGG - chr7.3:87496410-87496429 MS.gene79585:CDS 55.0%
GAGAAGGAGGAGGTGGAGAA+GGG + chr7.3:87495915-87495934 None:intergenic 55.0%
GAGAAGGAGGTGGAGGAGAA+GGG + chr7.3:87495900-87495919 None:intergenic 55.0%
GCAGGCCGGCATATATACGT+CGG + chr7.3:87496649-87496668 None:intergenic 55.0%
GCCATAACTTCATGGCAGGC+CGG + chr7.3:87496663-87496682 None:intergenic 55.0%
GCCTGCCATGAAGTTATGGC+TGG - chr7.3:87496663-87496682 MS.gene79585:CDS 55.0%
GCTCCCGGGAAGCAATACTA+CGG - chr7.3:87496465-87496484 MS.gene79585:CDS 55.0%
GGTCGAGATAGGGAGGAATG+TGG - chr7.3:87495766-87495785 MS.gene79585:CDS 55.0%
TCTACAGGATGGTGCTTGGC+GGG - chr7.3:87495745-87495764 MS.gene79585:CDS 55.0%
TGAAGGAACCGTATCCGACC+AGG - chr7.3:87496409-87496428 MS.gene79585:CDS 55.0%
! ATGAGGTACTCCTCCACAGG+AGG + chr7.3:87496156-87496175 None:intergenic 55.0%
! ATTGCTTCCCGGGAGCACAT+GGG + chr7.3:87496461-87496480 None:intergenic 55.0%
! GAGATGAGGTACTCCTCCAC+AGG + chr7.3:87496159-87496178 None:intergenic 55.0%
! TATTGCTTCCCGGGAGCACA+TGG + chr7.3:87496462-87496481 None:intergenic 55.0%
ACTCCTCCACAGGAGGAGGA+GGG + chr7.3:87496149-87496168 None:intergenic 60.0%
AGAAGGAGGAGGTGGAGGAG+GGG + chr7.3:87496040-87496059 None:intergenic 60.0%
AGGTACTCCTCCACAGGAGG+AGG + chr7.3:87496153-87496172 None:intergenic 60.0%
GAAGGAGGAGGTGGAGAAGG+AGG + chr7.3:87495913-87495932 None:intergenic 60.0%
GAAGGAGGAGGTGGAGAAGG+GGG + chr7.3:87495913-87495932 None:intergenic 60.0%
GAAGGAGGTGGAGGAGAAGG+AGG + chr7.3:87495898-87495917 None:intergenic 60.0%
GAAGGAGGTGGAGGAGAAGG+GGG + chr7.3:87495898-87495917 None:intergenic 60.0%
GAGAAGGAGGAGGTGGAGGA+GGG + chr7.3:87496041-87496060 None:intergenic 60.0%
GCCGGCCTGCCATGAAGTTA+TGG - chr7.3:87496659-87496678 MS.gene79585:CDS 60.0%
GGAGAAGGAGAAGGAGGAGG+GGG + chr7.3:87495922-87495941 None:intergenic 60.0%
GGAGAAGGAGAAGGAGGAGG+TGG + chr7.3:87495922-87495941 None:intergenic 60.0%
GGAGAAGGAGGAGGTGGAGA+AGG + chr7.3:87495916-87495935 None:intergenic 60.0%
GGAGAAGGAGGTGGAGGAGA+AGG + chr7.3:87495901-87495920 None:intergenic 60.0%
GGAGGAGAAGGAGAAGGAGG+AGG + chr7.3:87495925-87495944 None:intergenic 60.0%
GGAGGAGGAGAAGGAGAAGG+AGG + chr7.3:87495928-87495947 None:intergenic 60.0%
GGGAGAAGGAGAAGGAGGAG+GGG + chr7.3:87496019-87496038 None:intergenic 60.0%
GGGGAGAAGGAGAAGGAGGA+GGG + chr7.3:87496020-87496039 None:intergenic 60.0%
GGGTCAGTGGCAACAAGGTC+TGG + chr7.3:87496570-87496589 None:intergenic 60.0%
GGTTCGCAGTAGTCCCTGGT+CGG + chr7.3:87496426-87496445 None:intergenic 60.0%
TACTCCTCCACAGGAGGAGG+AGG + chr7.3:87496150-87496169 None:intergenic 60.0%
! GCTTGGTTCGCAGTAGTCCC+TGG + chr7.3:87496430-87496449 None:intergenic 60.0%
! GTGCTTGGCGGGTCGAGATA+GGG - chr7.3:87495756-87495775 MS.gene79585:CDS 60.0%
AGGAGGAGGAGGAGGAGGAG+GGG + chr7.3:87495848-87495867 None:intergenic 65.0%
AGGAGGAGGGGGAGGAGAAG+GGG + chr7.3:87496136-87496155 None:intergenic 65.0%
AGGTGGAGGAGAAGGGGGAG+GGG + chr7.3:87495893-87495912 None:intergenic 65.0%
CTCCTCCACAGGAGGAGGAG+GGG + chr7.3:87496148-87496167 None:intergenic 65.0%
GAAGGAGGAGGAGGAGGAGG+AGG + chr7.3:87495868-87495887 None:intergenic 65.0%
GAAGGAGGAGGGGGAGAAGG+AGG + chr7.3:87496009-87496028 None:intergenic 65.0%
GAAGGAGGAGGTGGAGGAGG+GGG + chr7.3:87496039-87496058 None:intergenic 65.0%
GAAGGGGGAGGTGGAGAAGG+AGG + chr7.3:87495979-87495998 None:intergenic 65.0%
GAGGAGGAGGAGGAGGAGGA+GGG + chr7.3:87495849-87495868 None:intergenic 65.0%
GAGGAGGAGGGGGAGGAGAA+GGG + chr7.3:87496137-87496156 None:intergenic 65.0%
GAGGTGGAGGAGAAGGGGGA+GGG + chr7.3:87495894-87495913 None:intergenic 65.0%
GGAGAAGGAGGAGGAGGAGG+AGG + chr7.3:87495871-87495890 None:intergenic 65.0%
GGAGAAGGAGGAGGGGGAGA+AGG + chr7.3:87496012-87496031 None:intergenic 65.0%
GGAGAAGGAGGAGGTGGAGG+AGG + chr7.3:87496042-87496061 None:intergenic 65.0%
GGAGAAGGGGGAGGAGGAGA+AGG + chr7.3:87495937-87495956 None:intergenic 65.0%
GGAGAAGGGGGAGGTGGAGA+AGG + chr7.3:87495982-87496001 None:intergenic 65.0%
GGAGGAGAAGGAGGAGGTGG+AGG + chr7.3:87495955-87495974 None:intergenic 65.0%
GGAGGAGGGGGAGAAGGAGA+AGG + chr7.3:87496027-87496046 None:intergenic 65.0%
GGAGGAGGTGGAGAAGGAGG+TGG + chr7.3:87495910-87495929 None:intergenic 65.0%
GGAGGGGGAGAAGGAGAAGG+AGG + chr7.3:87496024-87496043 None:intergenic 65.0%
GGAGGTGGAGAAGGAGGTGG+AGG + chr7.3:87495907-87495926 None:intergenic 65.0%
GGAGGTGGAGGAGAAGGAGG+AGG + chr7.3:87495961-87495980 None:intergenic 65.0%
GGGGGAGAAGGAGAAGGAGG+AGG + chr7.3:87496021-87496040 None:intergenic 65.0%
GGGGGAGGAGGAGAAGGAGA+AGG + chr7.3:87495931-87495950 None:intergenic 65.0%
GGTGGAGGAGAAGGAGGAGG+TGG + chr7.3:87495958-87495977 None:intergenic 65.0%
TCCTCCACAGGAGGAGGAGG+GGG + chr7.3:87496147-87496166 None:intergenic 65.0%
! CTTGGCGGGTCGAGATAGGG+AGG - chr7.3:87495759-87495778 MS.gene79585:CDS 65.0%
! GGTGCTTGGCGGGTCGAGAT+AGG - chr7.3:87495755-87495774 MS.gene79585:CDS 65.0%
AGGGGGAGGAGAAGGGGGAG+GGG + chr7.3:87496130-87496149 None:intergenic 70.0%
GAAGGGGGAGGGGGAGAAGG+AGG + chr7.3:87495883-87495902 None:intergenic 70.0%
GAGGAGGAGGAGGAGGGGGA+GGG + chr7.3:87495843-87495862 None:intergenic 70.0%
GAGGGGGAGGAGAAGGGGGA+GGG + chr7.3:87496131-87496150 None:intergenic 70.0%
GGAGAAGGGGGAGGGGGAGA+AGG + chr7.3:87495886-87495905 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr7.3:87495847-87495866 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+GGG + chr7.3:87495847-87495866 None:intergenic 70.0%
GGAGGAGGAGGGGGAGGAGA+AGG + chr7.3:87496138-87496157 None:intergenic 70.0%
GGAGGAGGGGGAGAAGGAGG+TGG + chr7.3:87496006-87496025 None:intergenic 70.0%
GGAGGAGGGGGAGGAGAAGG+GGG + chr7.3:87496135-87496154 None:intergenic 70.0%
GGAGGAGGTGGAGAAGGGGG+AGG + chr7.3:87495946-87495965 None:intergenic 70.0%
GGAGGGGGAGAAGGAGGAGG+AGG + chr7.3:87495877-87495896 None:intergenic 70.0%
GGAGGGGGAGAAGGAGGTGG+AGG + chr7.3:87496003-87496022 None:intergenic 70.0%
GGAGGTGGAGAAGGGGGAGG+AGG + chr7.3:87495943-87495962 None:intergenic 70.0%
GGAGGTGGAGGAGAAGGGGG+AGG + chr7.3:87495895-87495914 None:intergenic 70.0%
GGAGGTGGAGGAGGGGGAGA+AGG + chr7.3:87496033-87496052 None:intergenic 70.0%
GGGGGAGAAGGAGGAGGAGG+AGG + chr7.3:87495874-87495893 None:intergenic 70.0%
GGGGGAGGGGGAGAAGGAGA+AGG + chr7.3:87496117-87496136 None:intergenic 70.0%
GGGGGAGGTGGAGAAGGAGG+TGG + chr7.3:87495976-87495995 None:intergenic 70.0%
GGTGGAGGAGAAGGGGGAGG+GGG + chr7.3:87495892-87495911 None:intergenic 70.0%
GGTGGAGGAGAAGGGGGAGG+TGG + chr7.3:87495892-87495911 None:intergenic 70.0%
TCCACAGGAGGAGGAGGGGG+AGG + chr7.3:87496144-87496163 None:intergenic 70.0%
TCCCCCTCCTCCTCCTGTGG+AGG - chr7.3:87496143-87496162 MS.gene79585:CDS 70.0%
TCCTCCCCCTCCTCCTCCTG+TGG - chr7.3:87496140-87496159 MS.gene79585:CDS 70.0%
GAGGAGGGGGAGGGCCGCAA+TGG + chr7.3:87495834-87495853 None:intergenic 75.0%
GGAGGAGGAGGAGGAGGGGG+AGG + chr7.3:87495844-87495863 None:intergenic 75.0%
GGAGGGGGAGGAGAAGGGGG+AGG + chr7.3:87496132-87496151 None:intergenic 75.0%
GGGGGAGGAGAAGGGGGAGG+GGG + chr7.3:87496129-87496148 None:intergenic 75.0%
GGGGGAGGGGGAGAAGGAGG+AGG + chr7.3:87495880-87495899 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 87495691 87496929 87495691 ID=MS.gene79585
chr7.3 mRNA 87495691 87496929 87495691 ID=MS.gene79585.t1;Parent=MS.gene79585
chr7.3 exon 87495691 87496929 87495691 ID=MS.gene79585.t1.exon1;Parent=MS.gene79585.t1
chr7.3 CDS 87495691 87496929 87495691 ID=cds.MS.gene79585.t1;Parent=MS.gene79585.t1
Gene Sequence

>MS.gene79585

ATGACAATCAATCAATTCCCGACAGTAGTAATAGTACTACTAATTATAATAGGATCTACAGGATGGTGCTTGGCGGGTCGAGATAGGGAGGAATGTGGATTATGCTGCAGTGCATGGGATTTTTGTAGATCAATTGAAAGCCATTGCGGCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCCCCTCCCCCTTCTCCTCCACCTCCTTCTCCACCTCCTCCTTCTCCTTCTCCTCCTCCCCCTTCTCCACCTCCTCCTTCTCCTCCACCTCCTTCTCCACCTCCCCCTTCTCCTCCACCTCCTTCTCCCCCTCCTCCTTCTCCTTCTCCCCCTCCTCCACCTCCTCCTTCTCCTCCACCTCCTTCTCCACCTCCCCCTTCTCCTCCACCTCCTTCTCCCCCTCCTCCTTCTCCTTCTCCCCCTCCCCCTTCTCCTCCCCCTCCTCCTCCTGTGGAGGAGTACCTCATCTCGGTAAAGGATTTCAATGAGATGCTTAAGCATCACGATGATGATCTGTGTGAGGGGAAAGGATTTTACACGTATGAAGCTTTTGTGAAAGCTGCCAAAACCTTCCCCAAGTTCGGTAATGTAGGTACTACAAATTCAAAGAAATCGGACATTGCTGCTTTCTTTAGTCAAAGTTCTCACGAAACAAGTGGTGGATCAACTGAAGGACCTTACGATTGGGGATATTGCTTTGTGAAGGAACCGTATCCGACCAGGGACTACTGCGAACCAAGCTCTGAATTCCCATGTGCTCCCGGGAAGCAATACTACGGTAGGGGTCCATTCCAGATAACTGGAAACATAGATTACGGAAGATGTGGACGTGCAATAGGTGTTGACTTGCTAAAAAATCCAGACCTTGTTGCCACTGACCCAATTATATCCTTCAAGAGTGCTTTATGGTTTTGGATGACGCCTCCGATTCAGACATCCGACGTATATATGCCGGCCTGCCATGAAGTTATGGCTGGAATATGGACTCCTTCTCATGCTGATCAACTTCAGAGAAGGTATGGAGGATACGGGATGACAACTTATGTGGTGACTTCCTCCCAAAAATTCAAAAACTGGAAATGTGGAGGTGGGTTCATGACTCCAAGCGAGATGGATCGGATTGGATTTTACAAGAGATACTGTGACATACTACTTGTTGCATATGGAAACTATGTTGAATGCTATGGCTATCGTTCTAATTCGCTTACTTTCTCTGCCTAG
Protein sequence

>MS.gene79585.t1

MTINQFPTVVIVLLIIIGSTGWCLAGRDREECGLCCSAWDFCRSIESHCGPPPPPPPPPPPPPPPSPPPPSPPPPSPPPPSPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPSPPPPPPPSPPPPSPPPPSPPPPSPPPPSPSPPPPSPPPPPPVEEYLISVKDFNEMLKHHDDDLCEGKGFYTYEAFVKAAKTFPKFGNVGTTNSKKSDIAAFFSQSSHETSGGSTEGPYDWGYCFVKEPYPTRDYCEPSSEFPCAPGKQYYGRGPFQITGNIDYGRCGRAIGVDLLKNPDLVATDPIISFKSALWFWMTPPIQTSDVYMPACHEVMAGIWTPSHADQLQRRYGGYGMTTYVVTSSQKFKNWKCGGGFMTPSEMDRIGFYKRYCDILLVAYGNYVECYGYRSNSLTFSA