Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79607.t1 | XP_003621176.1 | 95.2 | 433 | 20 | 1 | 1 | 432 | 1 | 433 | 3.30E-230 | 807.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79607.t1 | Q9LH89 | 51.3 | 460 | 162 | 15 | 1 | 431 | 1 | 427 | 1.5e-111 | 404.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79607.t1 | Q2HVR5 | 95.2 | 433 | 20 | 1 | 1 | 432 | 1 | 433 | 2.4e-230 | 807.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene79607 | 0.818353 | 2.05E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene79607 | 0.800078 | 1.71E-48 | -1.69E-46 |
| MS.gene053171 | MS.gene79607 | 0.813576 | 2.39E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene79607 | 0.81013 | 1.34E-50 | -1.69E-46 |
| MS.gene054554 | MS.gene79607 | 0.807339 | 5.31E-50 | -1.69E-46 |
| MS.gene058492 | MS.gene79607 | 0.80082 | 1.20E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene79607 | 0.843126 | 1.70E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79607.t1 | MTR_7g010090 | 96.767 | 433 | 13 | 1 | 1 | 432 | 1 | 433 | 0.0 | 857 |
| MS.gene79607.t1 | MTR_6g011640 | 51.613 | 434 | 146 | 13 | 27 | 432 | 1 | 398 | 3.58e-130 | 381 |
| MS.gene79607.t1 | MTR_3g030520 | 67.273 | 165 | 45 | 3 | 272 | 432 | 141 | 300 | 2.28e-62 | 204 |
| MS.gene79607.t1 | MTR_1g051180 | 38.754 | 289 | 144 | 8 | 162 | 431 | 90 | 364 | 1.86e-52 | 180 |
| MS.gene79607.t1 | MTR_8g038440 | 47.977 | 173 | 68 | 4 | 262 | 431 | 102 | 255 | 5.35e-41 | 146 |
| MS.gene79607.t1 | MTR_5g083110 | 40.887 | 203 | 99 | 3 | 230 | 432 | 59 | 240 | 6.79e-39 | 140 |
| MS.gene79607.t1 | MTR_3g465550 | 49.383 | 162 | 62 | 4 | 265 | 426 | 87 | 228 | 8.83e-39 | 140 |
| MS.gene79607.t1 | MTR_7g090230 | 36.929 | 241 | 119 | 8 | 203 | 431 | 206 | 425 | 1.30e-38 | 144 |
| MS.gene79607.t1 | MTR_3g017490 | 45.455 | 165 | 71 | 3 | 266 | 430 | 115 | 260 | 5.79e-38 | 139 |
| MS.gene79607.t1 | MTR_5g048870 | 61.594 | 138 | 48 | 3 | 220 | 353 | 21 | 157 | 2.29e-36 | 131 |
| MS.gene79607.t1 | MTR_7g079015 | 68.687 | 99 | 26 | 3 | 306 | 400 | 1 | 98 | 7.37e-36 | 128 |
| MS.gene79607.t1 | MTR_7g106500 | 40.828 | 169 | 88 | 3 | 263 | 431 | 123 | 279 | 1.65e-35 | 132 |
| MS.gene79607.t1 | MTR_7g104720 | 39.367 | 221 | 105 | 6 | 219 | 431 | 206 | 405 | 1.72e-35 | 135 |
| MS.gene79607.t1 | MTR_1g090400 | 39.545 | 220 | 104 | 6 | 219 | 430 | 170 | 368 | 8.87e-35 | 133 |
| MS.gene79607.t1 | MTR_5g072400 | 43.452 | 168 | 74 | 3 | 263 | 430 | 107 | 253 | 1.78e-34 | 129 |
| MS.gene79607.t1 | MTR_1g053325 | 69.892 | 93 | 24 | 2 | 306 | 394 | 1 | 93 | 7.36e-33 | 120 |
| MS.gene79607.t1 | MTR_8g099665 | 43.023 | 172 | 76 | 4 | 264 | 430 | 213 | 367 | 1.22e-32 | 127 |
| MS.gene79607.t1 | MTR_1g095960 | 68.085 | 94 | 25 | 3 | 310 | 399 | 32 | 124 | 4.20e-32 | 119 |
| MS.gene79607.t1 | MTR_2g026830 | 64.583 | 96 | 31 | 3 | 306 | 400 | 1 | 94 | 9.35e-32 | 117 |
| MS.gene79607.t1 | MTR_8g106900 | 36.029 | 272 | 120 | 8 | 161 | 430 | 54 | 273 | 4.18e-31 | 120 |
| MS.gene79607.t1 | MTR_2g028040 | 67.000 | 100 | 27 | 3 | 306 | 400 | 1 | 99 | 4.69e-31 | 122 |
| MS.gene79607.t1 | MTR_2g028040 | 62.500 | 64 | 20 | 2 | 340 | 400 | 290 | 352 | 5.69e-15 | 76.3 |
| MS.gene79607.t1 | MTR_2g028040 | 65.000 | 60 | 17 | 2 | 344 | 400 | 228 | 286 | 4.59e-12 | 67.4 |
| MS.gene79607.t1 | MTR_3g071510 | 39.394 | 165 | 79 | 3 | 268 | 432 | 93 | 236 | 1.25e-30 | 118 |
| MS.gene79607.t1 | MTR_1g098230 | 65.934 | 91 | 26 | 3 | 314 | 400 | 9 | 98 | 2.00e-29 | 110 |
| MS.gene79607.t1 | MTR_5g088530 | 57.143 | 112 | 36 | 4 | 292 | 399 | 1 | 104 | 1.33e-28 | 108 |
| MS.gene79607.t1 | MTR_5g065050 | 72.527 | 91 | 21 | 2 | 306 | 392 | 1 | 91 | 5.76e-28 | 107 |
| MS.gene79607.t1 | MTR_5g031560 | 47.328 | 131 | 26 | 3 | 306 | 432 | 1 | 92 | 1.87e-26 | 102 |
| MS.gene79607.t1 | MTR_5g064740 | 62.500 | 96 | 25 | 3 | 306 | 400 | 1 | 86 | 5.85e-26 | 101 |
| MS.gene79607.t1 | MTR_7g078370 | 65.432 | 81 | 24 | 2 | 322 | 399 | 66 | 145 | 1.31e-25 | 102 |
| MS.gene79607.t1 | MTR_4g109990 | 49.600 | 125 | 18 | 3 | 290 | 414 | 1 | 80 | 3.74e-25 | 99.0 |
| MS.gene79607.t1 | MTR_2g436640 | 60.976 | 82 | 25 | 3 | 336 | 414 | 61 | 138 | 3.42e-21 | 90.5 |
| MS.gene79607.t1 | MTR_6g042350 | 56.667 | 90 | 20 | 3 | 306 | 391 | 1 | 75 | 1.39e-20 | 86.7 |
| MS.gene79607.t1 | MTR_7g086680 | 62.025 | 79 | 23 | 3 | 306 | 380 | 1 | 76 | 1.42e-20 | 85.9 |
| MS.gene79607.t1 | MTR_1g073880 | 67.188 | 64 | 20 | 1 | 306 | 368 | 1 | 64 | 1.64e-19 | 82.8 |
| MS.gene79607.t1 | MTR_6g086570 | 71.698 | 53 | 12 | 1 | 340 | 389 | 19 | 71 | 4.28e-17 | 76.3 |
| MS.gene79607.t1 | MTR_0140s0020 | 72.881 | 59 | 15 | 1 | 306 | 363 | 1 | 59 | 5.95e-14 | 66.6 |
| MS.gene79607.t1 | MTR_4g059510 | 56.000 | 75 | 29 | 2 | 329 | 400 | 58 | 131 | 4.51e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79607.t1 | AT3G28850 | 52.620 | 458 | 159 | 16 | 1 | 431 | 1 | 427 | 2.10e-125 | 370 |
| MS.gene79607.t1 | AT5G39865 | 46.171 | 457 | 152 | 11 | 1 | 431 | 1 | 389 | 1.52e-124 | 367 |
| MS.gene79607.t1 | AT3G57070 | 36.499 | 337 | 129 | 12 | 157 | 431 | 103 | 416 | 3.36e-50 | 176 |
| MS.gene79607.t1 | AT2G41330 | 35.673 | 342 | 146 | 12 | 140 | 431 | 84 | 401 | 1.43e-46 | 165 |
| MS.gene79607.t1 | AT5G13810 | 42.365 | 203 | 85 | 5 | 229 | 430 | 101 | 272 | 2.48e-40 | 145 |
| MS.gene79607.t1 | AT5G58530 | 41.026 | 195 | 86 | 4 | 248 | 432 | 92 | 267 | 4.41e-40 | 144 |
| MS.gene79607.t1 | AT5G03870 | 34.535 | 333 | 136 | 11 | 159 | 430 | 72 | 383 | 4.64e-38 | 142 |
| MS.gene79607.t1 | AT1G64500 | 45.614 | 171 | 76 | 5 | 263 | 430 | 209 | 365 | 7.50e-37 | 138 |
| MS.gene79607.t1 | AT4G10630 | 36.082 | 291 | 143 | 9 | 154 | 430 | 72 | 333 | 5.00e-35 | 132 |
| MS.gene79607.t1 | AT5G06470 | 43.452 | 168 | 80 | 4 | 263 | 430 | 86 | 238 | 1.72e-34 | 129 |
| MS.gene79607.t1 | AT1G32760 | 36.765 | 272 | 121 | 8 | 161 | 430 | 91 | 313 | 3.92e-31 | 122 |
| MS.gene79607.t1 | AT3G11773 | 39.130 | 161 | 76 | 3 | 270 | 430 | 11 | 149 | 7.55e-26 | 102 |
| MS.gene79607.t1 | AT5G01420 | 39.645 | 169 | 80 | 4 | 263 | 430 | 253 | 400 | 1.01e-23 | 102 |
| MS.gene79607.t1 | AT3G11773 | 36.154 | 130 | 61 | 3 | 301 | 430 | 92 | 199 | 4.07e-16 | 77.0 |
Find 72 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCATGTGTTGATTGTTTC+TGG | 0.087504 | 7.3:+87970125 | None:intergenic |
| CATCAATTGATGTTTGTTTA+AGG | 0.118181 | 7.3:+87969880 | None:intergenic |
| AAGATTGTTCCTAGTGTTAA+TGG | 0.198810 | 7.3:-87970413 | MS.gene79607:CDS |
| GGTGTTCTTGTTGGTGTCTT+TGG | 0.219568 | 7.3:+87970158 | None:intergenic |
| ATTTGAAGCCACATTGATTT+AGG | 0.250995 | 7.3:+87970005 | None:intergenic |
| GATGTTTGTTTAAGGTAAAA+AGG | 0.259720 | 7.3:+87969888 | None:intergenic |
| AATCAACACATGGGAGTTAA+TGG | 0.270519 | 7.3:-87970117 | MS.gene79607:CDS |
| AGAGATGTATCAATGCATTT+AGG | 0.299301 | 7.3:-87969699 | MS.gene79607:CDS |
| GGTCGTGAAGAAGGCGAGTT+TGG | 0.317310 | 7.3:-87969390 | MS.gene79607:CDS |
| ACATGCATTGAATAGCTTCT+TGG | 0.319625 | 7.3:+87970539 | None:intergenic |
| TGTCCGGATTGTAATGAAAA+TGG | 0.328066 | 7.3:-87969357 | MS.gene79607:CDS |
| GTGAGAATTGTGGTGATATA+AGG | 0.346142 | 7.3:-87969497 | MS.gene79607:CDS |
| GTTCCTTGTGAAACTTGTTT+TGG | 0.367950 | 7.3:-87969471 | MS.gene79607:CDS |
| TTCTACTTCACAAGCTTAAG+AGG | 0.391723 | 7.3:-87969795 | MS.gene79607:CDS |
| GTTTGGATTCCAACGTTGTC+CGG | 0.407446 | 7.3:-87969373 | MS.gene79607:CDS |
| ATCAATGCATTTAGGATTCA+AGG | 0.410818 | 7.3:-87969691 | MS.gene79607:CDS |
| TCACCAGGTGGTGTTCTTGT+TGG | 0.422909 | 7.3:+87970149 | None:intergenic |
| ATTGAATAGCTTCTTGGAAC+AGG | 0.429704 | 7.3:+87970545 | None:intergenic |
| ATCTTGAGAGAGTTCTTGTA+AGG | 0.439309 | 7.3:+87969914 | None:intergenic |
| TGGAAAGCTTGAGAAATTGT+TGG | 0.442255 | 7.3:-87969556 | MS.gene79607:CDS |
| GCACTCACATCAACCACATT+AGG | 0.444268 | 7.3:-87970473 | MS.gene79607:CDS |
| CTAAATGATGAAATCACATC+AGG | 0.449410 | 7.3:+87969942 | None:intergenic |
| ATTGAGAAACTTCATGAAGA+TGG | 0.453523 | 7.3:-87969576 | MS.gene79607:CDS |
| AGAAAAGGAAAATGAGAGAA+GGG | 0.460771 | 7.3:-87970300 | MS.gene79607:CDS |
| GAGAAGGGAGAAAGAGAAGA+AGG | 0.474934 | 7.3:-87970285 | MS.gene79607:CDS |
| CTCTCAAAATCATCCTCACT+TGG | 0.477958 | 7.3:+87969745 | None:intergenic |
| TTAGGTGATTTGTATGGTGG+AGG | 0.481073 | 7.3:-87969651 | MS.gene79607:CDS |
| AGGTGATTCGGCGATCGAAA+AGG | 0.481626 | 7.3:+87970074 | None:intergenic |
| TGTAAAATCTACTATGAAGA+TGG | 0.484572 | 7.3:-87969444 | MS.gene79607:CDS |
| GATGATCATGGTCGTGAAGA+AGG | 0.495634 | 7.3:-87969399 | MS.gene79607:CDS |
| TGAAGCCACATTGATTTAGG+AGG | 0.496188 | 7.3:+87970008 | None:intergenic |
| TAAGGTTGGTGGAAAGGAAA+AGG | 0.498704 | 7.3:-87969823 | MS.gene79607:CDS |
| TTTGTTGGTAAGAATTACAT+TGG | 0.498874 | 7.3:-87969612 | MS.gene79607:CDS |
| TTGATTGTTTCTGGTTCACC+AGG | 0.504436 | 7.3:+87970134 | None:intergenic |
| AAGAAAAGGAAAATGAGAGA+AGG | 0.506292 | 7.3:-87970301 | MS.gene79607:CDS |
| ACAAACATCAATTGATGAAG+AGG | 0.514395 | 7.3:-87969874 | MS.gene79607:CDS |
| TTTGTGGATGTTAAGGTTGG+TGG | 0.516446 | 7.3:-87969834 | MS.gene79607:CDS |
| TTTGATGTCAATGGTGGTGA+AGG | 0.524178 | 7.3:-87970038 | MS.gene79607:CDS |
| CATCAGGATCAAAATCAACT+TGG | 0.528722 | 7.3:+87969958 | None:intergenic |
| GAATTACATTGGTGGAGTTG+AGG | 0.540698 | 7.3:-87969601 | MS.gene79607:CDS |
| GTTGGTAAGAATTACATTGG+TGG | 0.551303 | 7.3:-87969609 | MS.gene79607:CDS |
| GAGGAAGAATATGATGATCA+TGG | 0.555068 | 7.3:-87969411 | MS.gene79607:CDS |
| GGTTGATTGAGGCAAAGACT+TGG | 0.560977 | 7.3:-87970217 | MS.gene79607:CDS |
| TCTACTTCACAAGCTTAAGA+GGG | 0.584829 | 7.3:-87969794 | MS.gene79607:CDS |
| TAACTGTCATCTTCAGATTG+AGG | 0.585248 | 7.3:+87970506 | None:intergenic |
| GGATGTTAAGGTTGGTGGAA+AGG | 0.588762 | 7.3:-87969829 | MS.gene79607:CDS |
| CTGTCATCTTCAGATTGAGG+TGG | 0.590952 | 7.3:+87970509 | None:intergenic |
| AAAATTGAGGATAGTAGTGG+TGG | 0.600502 | 7.3:-87969522 | MS.gene79607:CDS |
| ATTGTTTCTGGTTCACCAGG+TGG | 0.602186 | 7.3:+87970137 | None:intergenic |
| AACCAGAAACAATCAACACA+TGG | 0.603332 | 7.3:-87970127 | MS.gene79607:CDS |
| CATTACAATCCGGACAACGT+TGG | 0.612211 | 7.3:+87969364 | None:intergenic |
| CTTCCAAAACAAGTTTCACA+AGG | 0.615798 | 7.3:+87969468 | None:intergenic |
| TCATGAACACCATTAACACT+AGG | 0.618194 | 7.3:+87970404 | None:intergenic |
| AACACATGGGAGTTAATGGA+AGG | 0.623703 | 7.3:-87970113 | MS.gene79607:CDS |
| GGAATGTTGTGAGAAAATTG+AGG | 0.625190 | 7.3:-87969535 | MS.gene79607:CDS |
| TGTCATCTTCAGATTGAGGT+GGG | 0.627466 | 7.3:+87970510 | None:intergenic |
| ATGAAGATTGTTGCCAAGTG+AGG | 0.627753 | 7.3:-87969758 | MS.gene79607:CDS |
| TTGTAACTAGTAGCAGCACA+CGG | 0.628118 | 7.3:+87969320 | None:intergenic |
| TGTAACTAGTAGCAGCACAC+GGG | 0.628183 | 7.3:+87969321 | None:intergenic |
| AGTGGTGGATGTGAGAATTG+TGG | 0.628466 | 7.3:-87969507 | MS.gene79607:CDS |
| GAGAAAATTGAGGATAGTAG+TGG | 0.638020 | 7.3:-87969525 | MS.gene79607:CDS |
| TGGTGGAGGAAGATTGCCAA+AGG | 0.640203 | 7.3:-87969637 | MS.gene79607:CDS |
| TTTGAAGAAGAAGAATTGAG+CGG | 0.644772 | 7.3:+87970440 | None:intergenic |
| ACACCAACAAGAACACCACC+TGG | 0.657599 | 7.3:-87970152 | MS.gene79607:CDS |
| CTACTTCACAAGCTTAAGAG+GGG | 0.665104 | 7.3:-87969793 | MS.gene79607:CDS |
| CGGTTTGAGAGTACCTAATG+TGG | 0.677202 | 7.3:+87970460 | None:intergenic |
| ACCAGAAACAATCAACACAT+GGG | 0.696633 | 7.3:-87970126 | MS.gene79607:CDS |
| TTGATCCTCCTAAATCAATG+TGG | 0.706563 | 7.3:-87970013 | MS.gene79607:CDS |
| GTAACTAGTAGCAGCACACG+GGG | 0.716227 | 7.3:+87969322 | None:intergenic |
| AATGTGGCTTCAAATTACCG+AGG | 0.717932 | 7.3:-87969997 | MS.gene79607:CDS |
| TGAAGATGGTGATGACGACG+AGG | 0.723023 | 7.3:-87969430 | MS.gene79607:CDS |
| AATGCATTTAGGATTCAAGG+AGG | 0.743777 | 7.3:-87969688 | MS.gene79607:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTGAAAGAATTTTCAAT+GGG | - | chr7.3:87969689-87969708 | MS.gene79607:CDS | 20.0% |
| !!! | ATGATTTCAAGTTTTGTAAT+GGG | - | chr7.3:87969543-87969562 | MS.gene79607:CDS | 20.0% |
| !!! | ATGTTTGTTTAAGGTAAAAA+GGG | + | chr7.3:87970042-87970061 | None:intergenic | 20.0% |
| ! | CATCAATTGATGTTTGTTTA+AGG | + | chr7.3:87970051-87970070 | None:intergenic | 25.0% |
| ! | TGTAAAATCTACTATGAAGA+TGG | - | chr7.3:87970484-87970503 | MS.gene79607:CDS | 25.0% |
| !! | AAGTGAAAGAATTTTCAATG+GGG | - | chr7.3:87969690-87969709 | MS.gene79607:CDS | 25.0% |
| !! | GAAAGTGAAAGAATTTTCAA+TGG | - | chr7.3:87969688-87969707 | MS.gene79607:CDS | 25.0% |
| !! | GATGTTTGTTTAAGGTAAAA+AGG | + | chr7.3:87970043-87970062 | None:intergenic | 25.0% |
| !! | TTAAAGAGAGTGAAAGTTTT+AGG | - | chr7.3:87969570-87969589 | MS.gene79607:CDS | 25.0% |
| !! | TTTGTTGGTAAGAATTACAT+TGG | - | chr7.3:87970316-87970335 | MS.gene79607:CDS | 25.0% |
| !!! | AATGAAAGATGATGTTTTTG+TGG | - | chr7.3:87970078-87970097 | MS.gene79607:CDS | 25.0% |
| !!! | CATGATTTCAAGTTTTGTAA+TGG | - | chr7.3:87969542-87969561 | MS.gene79607:CDS | 25.0% |
| AAGAAAAGGAAAATGAGAGA+AGG | - | chr7.3:87969627-87969646 | MS.gene79607:CDS | 30.0% | |
| AAGATTGTTCCTAGTGTTAA+TGG | - | chr7.3:87969515-87969534 | MS.gene79607:CDS | 30.0% | |
| ACAAACATCAATTGATGAAG+AGG | - | chr7.3:87970054-87970073 | MS.gene79607:CDS | 30.0% | |
| AGAAAAGGAAAATGAGAGAA+GGG | - | chr7.3:87969628-87969647 | MS.gene79607:CDS | 30.0% | |
| AGAGATGTATCAATGCATTT+AGG | - | chr7.3:87970229-87970248 | MS.gene79607:CDS | 30.0% | |
| ATTGAGAAACTTCATGAAGA+TGG | - | chr7.3:87970352-87970371 | MS.gene79607:CDS | 30.0% | |
| CTAAATGATGAAATCACATC+AGG | + | chr7.3:87969989-87970008 | None:intergenic | 30.0% | |
| GCAAAAACTCAAGAAAGAAA+AGG | - | chr7.3:87969613-87969632 | MS.gene79607:CDS | 30.0% | |
| TTCTTACCAACAAAAACCTT+TGG | + | chr7.3:87970310-87970329 | None:intergenic | 30.0% | |
| TTTGAAGAAGAAGAATTGAG+CGG | + | chr7.3:87969491-87969510 | None:intergenic | 30.0% | |
| ! | AGTCCATTTTCATTACAATC+CGG | + | chr7.3:87970577-87970596 | None:intergenic | 30.0% |
| ! | ATCAATGCATTTAGGATTCA+AGG | - | chr7.3:87970237-87970256 | MS.gene79607:CDS | 30.0% |
| !! | ATTTGAAGCCACATTGATTT+AGG | + | chr7.3:87969926-87969945 | None:intergenic | 30.0% |
| !! | TGATGTTTTTGTGGATGTTA+AGG | - | chr7.3:87970087-87970106 | MS.gene79607:CDS | 30.0% |
| AAAATTGAGGATAGTAGTGG+TGG | - | chr7.3:87970406-87970425 | MS.gene79607:CDS | 35.0% | |
| AACCAGAAACAATCAACACA+TGG | - | chr7.3:87969801-87969820 | MS.gene79607:CDS | 35.0% | |
| AATCAACACATGGGAGTTAA+TGG | - | chr7.3:87969811-87969830 | MS.gene79607:CDS | 35.0% | |
| ACATGCATTGAATAGCTTCT+TGG | + | chr7.3:87969392-87969411 | None:intergenic | 35.0% | |
| ACCAGAAACAATCAACACAT+GGG | - | chr7.3:87969802-87969821 | MS.gene79607:CDS | 35.0% | |
| ATCTTGAGAGAGTTCTTGTA+AGG | + | chr7.3:87970017-87970036 | None:intergenic | 35.0% | |
| ATTGAATAGCTTCTTGGAAC+AGG | + | chr7.3:87969386-87969405 | None:intergenic | 35.0% | |
| CATCAGGATCAAAATCAACT+TGG | + | chr7.3:87969973-87969992 | None:intergenic | 35.0% | |
| CTTCCAAAACAAGTTTCACA+AGG | + | chr7.3:87970463-87970482 | None:intergenic | 35.0% | |
| GAGAAAATTGAGGATAGTAG+TGG | - | chr7.3:87970403-87970422 | MS.gene79607:CDS | 35.0% | |
| GAGGAAGAATATGATGATCA+TGG | - | chr7.3:87970517-87970536 | MS.gene79607:CDS | 35.0% | |
| GGAATGTTGTGAGAAAATTG+AGG | - | chr7.3:87970393-87970412 | MS.gene79607:CDS | 35.0% | |
| GTGAGAATTGTGGTGATATA+AGG | - | chr7.3:87970431-87970450 | MS.gene79607:CDS | 35.0% | |
| TAACTGTCATCTTCAGATTG+AGG | + | chr7.3:87969425-87969444 | None:intergenic | 35.0% | |
| TCATGAACACCATTAACACT+AGG | + | chr7.3:87969527-87969546 | None:intergenic | 35.0% | |
| TCTACTTCACAAGCTTAAGA+GGG | - | chr7.3:87970134-87970153 | MS.gene79607:CDS | 35.0% | |
| TGGAAAGCTTGAGAAATTGT+TGG | - | chr7.3:87970372-87970391 | MS.gene79607:CDS | 35.0% | |
| TGTCCGGATTGTAATGAAAA+TGG | - | chr7.3:87970571-87970590 | MS.gene79607:CDS | 35.0% | |
| TTCTACTTCACAAGCTTAAG+AGG | - | chr7.3:87970133-87970152 | MS.gene79607:CDS | 35.0% | |
| TTGATCCTCCTAAATCAATG+TGG | - | chr7.3:87969915-87969934 | MS.gene79607:CDS | 35.0% | |
| ! | AATGCATTTAGGATTCAAGG+AGG | - | chr7.3:87970240-87970259 | MS.gene79607:CDS | 35.0% |
| ! | AGATTGCCAAAGGTTTTTGT+TGG | - | chr7.3:87970301-87970320 | MS.gene79607:CDS | 35.0% |
| ! | AGCTTCTCTTTTGATGTCAA+TGG | - | chr7.3:87969881-87969900 | MS.gene79607:CDS | 35.0% |
| ! | CATCAAAAGAGAAGCTTTTG+AGG | + | chr7.3:87969877-87969896 | None:intergenic | 35.0% |
| ! | GTTGGTAAGAATTACATTGG+TGG | - | chr7.3:87970319-87970338 | MS.gene79607:CDS | 35.0% |
| ! | GTTTTTGTGGATGTTAAGGT+TGG | - | chr7.3:87970091-87970110 | MS.gene79607:CDS | 35.0% |
| ! | TTCTCTTTTGATGTCAATGG+TGG | - | chr7.3:87969884-87969903 | MS.gene79607:CDS | 35.0% |
| !! | AAGTGAGGATGATTTTGAGA+GGG | - | chr7.3:87970185-87970204 | MS.gene79607:CDS | 35.0% |
| !! | ATTTTCAATGGGGTTGATTG+AGG | - | chr7.3:87969700-87969719 | MS.gene79607:CDS | 35.0% |
| !! | CTTTTAGGTGATTTGTATGG+TGG | - | chr7.3:87970274-87970293 | MS.gene79607:CDS | 35.0% |
| !! | GAGCTTTTAGGTGATTTGTA+TGG | - | chr7.3:87970271-87970290 | MS.gene79607:CDS | 35.0% |
| !! | GTTCCTTGTGAAACTTGTTT+TGG | - | chr7.3:87970457-87970476 | MS.gene79607:CDS | 35.0% |
| !!! | GTTGAGTTTTGATTCTTCCT+CGG | + | chr7.3:87969951-87969970 | None:intergenic | 35.0% |
| AACACATGGGAGTTAATGGA+AGG | - | chr7.3:87969815-87969834 | MS.gene79607:CDS | 40.0% | |
| AATGTGGCTTCAAATTACCG+AGG | - | chr7.3:87969931-87969950 | MS.gene79607:CDS | 40.0% | |
| ATGAAGATTGTTGCCAAGTG+AGG | - | chr7.3:87970170-87970189 | MS.gene79607:CDS | 40.0% | |
| CTACTTCACAAGCTTAAGAG+GGG | - | chr7.3:87970135-87970154 | MS.gene79607:CDS | 40.0% | |
| CTCTCAAAATCATCCTCACT+TGG | + | chr7.3:87970186-87970205 | None:intergenic | 40.0% | |
| GAATTACATTGGTGGAGTTG+AGG | - | chr7.3:87970327-87970346 | MS.gene79607:CDS | 40.0% | |
| TGTCATCTTCAGATTGAGGT+GGG | + | chr7.3:87969421-87969440 | None:intergenic | 40.0% | |
| TTTGTGGATGTTAAGGTTGG+TGG | - | chr7.3:87970094-87970113 | MS.gene79607:CDS | 40.0% | |
| ! | CAAGTGAGGATGATTTTGAG+AGG | - | chr7.3:87970184-87970203 | MS.gene79607:CDS | 40.0% |
| ! | TTAGGTGATTTGTATGGTGG+AGG | - | chr7.3:87970277-87970296 | MS.gene79607:CDS | 40.0% |
| ! | TTTGATGTCAATGGTGGTGA+AGG | - | chr7.3:87969890-87969909 | MS.gene79607:CDS | 40.0% |
| !! | AGGATGATTTTGAGAGGGTT+AGG | - | chr7.3:87970190-87970209 | MS.gene79607:CDS | 40.0% |
| !! | ATGTCTACATCGCTTTTGCT+TGG | + | chr7.3:87969345-87969364 | None:intergenic | 40.0% |
| !! | TAAGGTTGGTGGAAAGGAAA+AGG | - | chr7.3:87970105-87970124 | MS.gene79607:CDS | 40.0% |
| !! | TCCCATGTGTTGATTGTTTC+TGG | + | chr7.3:87969806-87969825 | None:intergenic | 40.0% |
| !! | TGAAGCCACATTGATTTAGG+AGG | + | chr7.3:87969923-87969942 | None:intergenic | 40.0% |
| !! | TTGATTGTTTCTGGTTCACC+AGG | + | chr7.3:87969797-87969816 | None:intergenic | 40.0% |
| !!! | GAGAAGCTTTTGAGGTGATT+CGG | + | chr7.3:87969869-87969888 | None:intergenic | 40.0% |
| CATTACAATCCGGACAACGT+TGG | + | chr7.3:87970567-87970586 | None:intergenic | 45.0% | |
| CTGTCATCTTCAGATTGAGG+TGG | + | chr7.3:87969422-87969441 | None:intergenic | 45.0% | |
| GAGAAGGGAGAAAGAGAAGA+AGG | - | chr7.3:87969643-87969662 | MS.gene79607:CDS | 45.0% | |
| GATGATCATGGTCGTGAAGA+AGG | - | chr7.3:87970529-87970548 | MS.gene79607:CDS | 45.0% | |
| GCACTCACATCAACCACATT+AGG | - | chr7.3:87969455-87969474 | MS.gene79607:CDS | 45.0% | |
| GGTTGATTGAGGCAAAGACT+TGG | - | chr7.3:87969711-87969730 | MS.gene79607:CDS | 45.0% | |
| GTTTGGATTCCAACGTTGTC+CGG | - | chr7.3:87970555-87970574 | MS.gene79607:CDS | 45.0% | |
| ! | GAGGAGCTAAGAGAGCTTTT+AGG | - | chr7.3:87970259-87970278 | MS.gene79607:CDS | 45.0% |
| ! | GGTGTTCTTGTTGGTGTCTT+TGG | + | chr7.3:87969773-87969792 | None:intergenic | 45.0% |
| !! | AGTGGTGGATGTGAGAATTG+TGG | - | chr7.3:87970421-87970440 | MS.gene79607:CDS | 45.0% |
| !! | ATTGTTTCTGGTTCACCAGG+TGG | + | chr7.3:87969794-87969813 | None:intergenic | 45.0% |
| !! | CGGTTTGAGAGTACCTAATG+TGG | + | chr7.3:87969471-87969490 | None:intergenic | 45.0% |
| !! | GGATGTTAAGGTTGGTGGAA+AGG | - | chr7.3:87970099-87970118 | MS.gene79607:CDS | 45.0% |
| ACACCAACAAGAACACCACC+TGG | - | chr7.3:87969776-87969795 | MS.gene79607:CDS | 50.0% | |
| TCACCAGGTGGTGTTCTTGT+TGG | + | chr7.3:87969782-87969801 | None:intergenic | 50.0% | |
| TGGTGGAGGAAGATTGCCAA+AGG | - | chr7.3:87970291-87970310 | MS.gene79607:CDS | 50.0% | |
| ! | AGGTGATTCGGCGATCGAAA+AGG | + | chr7.3:87969857-87969876 | None:intergenic | 50.0% |
| ! | TGAAGATGGTGATGACGACG+AGG | - | chr7.3:87970498-87970517 | MS.gene79607:CDS | 50.0% |
| GGTCGTGAAGAAGGCGAGTT+TGG | - | chr7.3:87970538-87970557 | MS.gene79607:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 87969326 | 87970624 | 87969326 | ID=MS.gene79607 |
| chr7.3 | mRNA | 87969326 | 87970624 | 87969326 | ID=MS.gene79607.t1;Parent=MS.gene79607 |
| chr7.3 | exon | 87969326 | 87970624 | 87969326 | ID=MS.gene79607.t1.exon1;Parent=MS.gene79607.t1 |
| chr7.3 | CDS | 87969326 | 87970624 | 87969326 | ID=cds.MS.gene79607.t1;Parent=MS.gene79607.t1 |
| Gene Sequence |
| Protein sequence |
